Query 042154
Match_columns 377
No_of_seqs 581 out of 1780
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 05:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.6E-33 2.9E-37 255.2 35.7 343 17-365 146-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.1E-32 3.1E-36 248.4 37.6 340 19-365 82-546 (597)
3 4g26_A Pentatricopeptide repea 100.0 8.6E-34 2.9E-38 252.5 22.3 205 76-281 9-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.7E-33 1.6E-37 247.8 24.1 182 166-347 29-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.9E-28 9.8E-33 213.0 35.7 339 18-366 30-370 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1E-26 3.5E-31 203.2 36.7 324 17-350 63-388 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 1.2E-25 4E-30 200.3 32.2 338 17-365 22-411 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.9E-24 6.4E-29 192.5 32.2 318 39-367 10-361 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.4E-24 1.5E-28 193.3 29.3 339 19-366 37-480 (514)
10 2gw1_A Mitochondrial precursor 99.9 3.3E-23 1.1E-27 187.5 28.8 338 21-366 6-446 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.2E-22 4E-27 185.0 32.3 340 18-367 56-494 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 6.1E-22 2.1E-26 170.6 35.1 318 20-347 2-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 2.5E-21 8.6E-26 166.8 33.2 303 56-367 2-338 (359)
14 3fp2_A TPR repeat-containing p 99.9 7.2E-21 2.4E-25 173.2 30.3 337 20-366 24-459 (537)
15 3hym_B Cell division cycle pro 99.9 1.8E-20 6.2E-25 159.5 30.6 287 57-350 22-320 (330)
16 3hym_B Cell division cycle pro 99.9 1.4E-20 4.8E-25 160.2 29.8 294 16-317 17-322 (330)
17 1fch_A Peroxisomal targeting s 99.9 1.6E-20 5.4E-25 162.6 23.3 291 68-363 36-358 (368)
18 4eqf_A PEX5-related protein; a 99.9 2.1E-20 7.1E-25 161.7 22.5 233 21-260 65-308 (365)
19 1fch_A Peroxisomal targeting s 99.9 1.9E-20 6.4E-25 162.1 22.2 290 30-326 34-356 (368)
20 4eqf_A PEX5-related protein; a 99.9 3.1E-20 1.1E-24 160.7 20.2 264 95-362 68-354 (365)
21 3cv0_A Peroxisome targeting si 99.8 3.4E-19 1.2E-23 151.4 23.8 262 98-365 27-316 (327)
22 3cv0_A Peroxisome targeting si 99.8 1.9E-19 6.5E-24 153.0 21.8 277 19-325 19-311 (327)
23 2xm6_A Protein corresponding t 99.8 9.5E-17 3.2E-21 144.3 39.3 250 20-292 38-320 (490)
24 2xm6_A Protein corresponding t 99.8 9.2E-17 3.2E-21 144.4 38.0 320 19-365 73-433 (490)
25 3mkr_A Coatomer subunit epsilo 99.8 5.8E-18 2E-22 141.1 26.3 276 64-358 6-288 (291)
26 3mkr_A Coatomer subunit epsilo 99.8 1.6E-17 5.3E-22 138.5 27.6 274 28-321 6-286 (291)
27 1b89_A Protein (clathrin heavy 99.8 5.8E-19 2E-23 150.7 18.1 283 33-359 15-306 (449)
28 4g1t_A Interferon-induced prot 99.8 2E-17 6.9E-22 148.0 29.1 345 16-367 46-462 (472)
29 1b89_A Protein (clathrin heavy 99.8 6E-19 2E-23 150.6 16.0 266 19-322 30-304 (449)
30 3spa_A Mtrpol, DNA-directed RN 99.8 6.7E-20 2.3E-24 168.7 10.1 119 163-281 127-249 (1134)
31 2ooe_A Cleavage stimulation fa 99.8 2.4E-15 8.3E-20 136.5 37.5 201 163-366 272-494 (530)
32 3spa_A Mtrpol, DNA-directed RN 99.8 2.7E-19 9.2E-24 164.8 9.4 153 125-282 125-286 (1134)
33 3uq3_A Heat shock protein STI1 99.8 4.1E-16 1.4E-20 127.6 22.9 223 128-364 6-236 (258)
34 2pl2_A Hypothetical conserved 99.8 9.9E-17 3.4E-21 127.8 18.5 199 18-224 2-211 (217)
35 2ooe_A Cleavage stimulation fa 99.7 6.8E-15 2.3E-19 133.5 32.1 338 18-365 10-455 (530)
36 2pl2_A Hypothetical conserved 99.7 5E-16 1.7E-20 123.7 21.8 198 161-364 3-214 (217)
37 3uq3_A Heat shock protein STI1 99.7 5.8E-16 2E-20 126.7 21.0 224 22-261 6-235 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.9E-16 1.7E-20 128.5 19.6 245 103-358 16-269 (275)
39 1ouv_A Conserved hypothetical 99.7 1.3E-14 4.6E-19 119.9 27.9 216 97-329 11-251 (273)
40 1xi4_A Clathrin heavy chain; a 99.7 8.4E-14 2.9E-18 132.9 36.2 299 19-365 983-1310(1630)
41 3u4t_A TPR repeat-containing p 99.7 2E-15 6.9E-20 124.6 22.3 236 21-262 3-250 (272)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.5E-16 5E-21 131.7 13.6 250 30-290 14-268 (275)
43 2ho1_A Type 4 fimbrial biogene 99.7 1E-14 3.5E-19 119.0 23.8 199 127-329 37-238 (252)
44 3u4t_A TPR repeat-containing p 99.7 8.7E-15 3E-19 120.8 23.0 239 97-341 8-261 (272)
45 2ho1_A Type 4 fimbrial biogene 99.7 4E-15 1.4E-19 121.4 20.7 201 57-262 37-238 (252)
46 1ouv_A Conserved hypothetical 99.7 8.9E-14 3E-18 114.9 28.5 225 126-367 5-254 (273)
47 2vq2_A PILW, putative fimbrial 99.7 3E-14 1E-18 113.9 24.6 199 126-328 7-210 (225)
48 1xi4_A Clathrin heavy chain; a 99.7 3.9E-13 1.3E-17 128.4 35.5 301 19-359 1103-1440(1630)
49 2vq2_A PILW, putative fimbrial 99.7 1E-14 3.5E-19 116.6 21.1 202 20-226 7-210 (225)
50 2q7f_A YRRB protein; TPR, prot 99.7 5.9E-15 2E-19 119.6 19.4 199 127-330 23-223 (243)
51 4g1t_A Interferon-induced prot 99.7 1.5E-13 5.3E-18 122.8 30.3 308 53-366 47-403 (472)
52 2q7f_A YRRB protein; TPR, prot 99.7 1.7E-15 5.8E-20 122.8 16.0 201 20-227 22-222 (243)
53 2h6f_A Protein farnesyltransfe 99.7 6.6E-15 2.3E-19 126.7 19.5 229 22-259 98-344 (382)
54 3sf4_A G-protein-signaling mod 99.7 2.5E-15 8.7E-20 131.4 17.2 299 20-351 8-363 (406)
55 3sf4_A G-protein-signaling mod 99.7 1.3E-15 4.3E-20 133.4 15.1 265 21-317 47-364 (406)
56 3e4b_A ALGK; tetratricopeptide 99.7 6.7E-14 2.3E-18 124.1 25.1 319 27-367 9-390 (452)
57 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-14 4.2E-19 128.8 19.2 284 62-367 8-354 (452)
58 2h6f_A Protein farnesyltransfe 99.6 4.8E-14 1.6E-18 121.4 22.3 232 127-366 97-350 (382)
59 4a1s_A PINS, partner of inscut 99.6 4.8E-15 1.6E-19 130.1 16.2 273 57-329 48-372 (411)
60 4a1s_A PINS, partner of inscut 99.6 6E-15 2.1E-19 129.5 15.7 267 97-364 53-372 (411)
61 3ro2_A PINS homolog, G-protein 99.6 1.7E-14 5.7E-19 122.7 17.2 62 302-363 265-331 (338)
62 3ulq_A Response regulator aspa 99.6 5E-14 1.7E-18 122.5 20.2 297 32-328 23-367 (383)
63 3ulq_A Response regulator aspa 99.6 4.4E-14 1.5E-18 122.8 19.8 293 66-363 21-367 (383)
64 2ond_A Cleavage stimulation fa 99.6 8.2E-13 2.8E-17 111.1 25.5 218 38-262 33-270 (308)
65 3ro2_A PINS homolog, G-protein 99.6 1.2E-14 4.2E-19 123.5 14.4 273 57-329 5-332 (338)
66 3vtx_A MAMA; tetratricopeptide 99.6 3.4E-13 1.2E-17 104.3 20.5 163 163-328 5-169 (184)
67 3nf1_A KLC 1, kinesin light ch 99.6 8.7E-15 3E-19 123.2 11.9 242 18-261 24-306 (311)
68 4abn_A Tetratricopeptide repea 99.6 8.4E-14 2.9E-18 124.2 18.5 210 107-323 83-315 (474)
69 3q15_A PSP28, response regulat 99.6 4.8E-13 1.6E-17 116.0 22.5 229 98-327 107-363 (378)
70 2ond_A Cleavage stimulation fa 99.6 3.1E-12 1.1E-16 107.5 26.6 182 180-364 81-270 (308)
71 3q15_A PSP28, response regulat 99.6 1.2E-12 4.2E-17 113.4 24.2 228 132-363 106-364 (378)
72 4abn_A Tetratricopeptide repea 99.6 8.3E-14 2.8E-18 124.3 17.0 215 71-292 82-316 (474)
73 3vtx_A MAMA; tetratricopeptide 99.5 2.4E-12 8.3E-17 99.4 21.3 167 197-366 4-172 (184)
74 3nf1_A KLC 1, kinesin light ch 99.5 6.1E-13 2.1E-17 111.8 17.8 240 124-364 24-307 (311)
75 1hz4_A MALT regulatory protein 99.5 1.6E-11 5.4E-16 106.2 26.0 299 60-366 17-351 (373)
76 1hz4_A MALT regulatory protein 99.5 2.1E-11 7.1E-16 105.4 24.4 299 24-330 17-350 (373)
77 3as5_A MAMA; tetratricopeptide 99.5 2E-11 6.9E-16 94.0 20.4 163 95-262 11-173 (186)
78 3as5_A MAMA; tetratricopeptide 99.4 1.1E-11 3.7E-16 95.5 17.9 162 164-328 9-172 (186)
79 4i17_A Hypothetical protein; T 99.4 6E-11 2E-15 95.0 22.3 195 125-331 5-211 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.4 1.6E-12 5.6E-17 120.7 14.4 169 16-191 4-173 (723)
81 3edt_B KLC 2, kinesin light ch 99.4 3.7E-12 1.3E-16 105.4 13.6 136 126-261 42-197 (283)
82 4i17_A Hypothetical protein; T 99.4 2.3E-11 7.9E-16 97.4 17.0 197 17-228 3-210 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.4 9.1E-12 3.1E-16 115.7 16.5 168 53-226 5-173 (723)
84 3edt_B KLC 2, kinesin light ch 99.4 8E-12 2.7E-16 103.3 14.1 227 34-262 14-281 (283)
85 1qqe_A Vesicular transport pro 99.4 9.1E-11 3.1E-15 97.7 20.2 207 107-328 32-268 (292)
86 4e6h_A MRNA 3'-END-processing 99.4 2.5E-09 8.7E-14 98.3 30.7 343 18-366 63-535 (679)
87 4e6h_A MRNA 3'-END-processing 99.4 1.9E-09 6.6E-14 99.1 29.5 358 6-367 124-573 (679)
88 1qqe_A Vesicular transport pro 99.3 2.4E-10 8.3E-15 95.1 18.7 212 72-300 32-273 (292)
89 3mv2_B Coatomer subunit epsilo 99.3 5.4E-09 1.9E-13 85.7 25.4 177 146-330 85-283 (310)
90 3mv2_B Coatomer subunit epsilo 99.3 3.5E-09 1.2E-13 86.9 22.4 246 99-367 20-285 (310)
91 3qky_A Outer membrane assembly 99.2 2.4E-10 8.1E-15 93.5 15.0 103 18-122 12-127 (261)
92 3qky_A Outer membrane assembly 99.2 5.3E-10 1.8E-14 91.5 16.2 210 125-354 13-251 (261)
93 3rjv_A Putative SEL1 repeat pr 99.2 4.2E-09 1.4E-13 83.1 20.4 174 145-329 4-197 (212)
94 2r5s_A Uncharacterized protein 99.2 1.8E-10 6.2E-15 88.1 11.9 159 23-189 8-170 (176)
95 2fo7_A Synthetic consensus TPR 99.2 9.9E-10 3.4E-14 79.5 15.4 127 236-364 4-132 (136)
96 3urz_A Uncharacterized protein 99.2 2E-09 6.9E-14 84.7 18.0 134 202-340 58-195 (208)
97 3urz_A Uncharacterized protein 99.2 5.6E-10 1.9E-14 87.9 14.0 180 21-227 4-186 (208)
98 2pzi_A Probable serine/threoni 99.2 2.8E-10 9.4E-15 106.1 14.1 171 68-247 402-582 (681)
99 2fo7_A Synthetic consensus TPR 99.2 2.3E-09 8E-14 77.5 16.2 129 129-261 3-131 (136)
100 2r5s_A Uncharacterized protein 99.2 1.9E-09 6.6E-14 82.3 15.6 159 97-260 11-171 (176)
101 3qou_A Protein YBBN; thioredox 99.1 4.8E-10 1.6E-14 93.0 12.6 180 37-226 102-283 (287)
102 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.2E-09 1.8E-13 83.4 17.1 188 20-228 3-214 (225)
103 2ifu_A Gamma-SNAP; membrane fu 99.1 2.9E-09 1E-13 89.3 16.0 127 165-292 78-219 (307)
104 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.8E-09 2E-13 83.1 17.0 189 162-369 3-218 (225)
105 3rjv_A Putative SEL1 repeat pr 99.1 1.5E-08 5E-13 79.9 18.7 175 181-367 4-200 (212)
106 2pzi_A Probable serine/threoni 99.1 3.6E-09 1.2E-13 98.6 17.0 174 138-315 402-583 (681)
107 4ga2_A E3 SUMO-protein ligase 99.1 7E-10 2.4E-14 82.3 9.7 143 28-177 4-148 (150)
108 3qou_A Protein YBBN; thioredox 99.1 7.2E-09 2.5E-13 85.9 16.8 158 97-259 122-281 (287)
109 4f3v_A ESX-1 secretion system 99.1 9E-09 3.1E-13 83.3 16.3 197 33-237 18-245 (282)
110 4ga2_A E3 SUMO-protein ligase 99.1 6.6E-10 2.3E-14 82.4 9.0 111 102-216 7-117 (150)
111 2vsy_A XCC0866; transferase, g 99.1 6E-09 2.1E-13 95.3 16.8 162 176-341 2-168 (568)
112 2ifu_A Gamma-SNAP; membrane fu 99.0 1.2E-08 4.1E-13 85.5 16.5 224 104-357 3-254 (307)
113 2vsy_A XCC0866; transferase, g 99.0 1.1E-08 3.7E-13 93.6 17.2 154 70-228 2-158 (568)
114 3dra_A Protein farnesyltransfe 99.0 3E-07 1E-11 76.1 24.1 215 107-328 48-286 (306)
115 3dra_A Protein farnesyltransfe 99.0 1.9E-07 6.5E-12 77.3 21.3 223 32-261 43-286 (306)
116 3u3w_A Transcriptional activat 98.9 3.7E-07 1.3E-11 75.8 22.1 161 168-328 80-265 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.3E-07 7.8E-12 73.0 19.4 125 132-262 11-150 (213)
118 2uy1_A Cleavage stimulation fa 98.9 4E-07 1.4E-11 81.2 22.7 202 144-363 196-412 (493)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.2E-08 2.5E-12 75.9 16.2 126 199-329 7-150 (213)
120 3u3w_A Transcriptional activat 98.9 6.1E-08 2.1E-12 80.6 15.9 205 15-226 40-265 (293)
121 2qfc_A PLCR protein; TPR, HTH, 98.9 1.7E-07 5.9E-12 77.8 18.6 162 98-259 81-263 (293)
122 2c2l_A CHIP, carboxy terminus 98.9 2E-08 6.9E-13 82.9 12.5 191 163-364 4-199 (281)
123 2qfc_A PLCR protein; TPR, HTH, 98.9 2.1E-07 7.2E-12 77.3 18.6 162 165-326 77-263 (293)
124 2uy1_A Cleavage stimulation fa 98.8 6.5E-06 2.2E-10 73.4 27.4 327 23-362 17-381 (493)
125 1a17_A Serine/threonine protei 98.8 2.1E-07 7.2E-12 69.8 15.2 126 235-362 15-144 (166)
126 2lni_A Stress-induced-phosphop 98.8 3.6E-08 1.2E-12 71.0 10.1 119 17-139 12-130 (133)
127 4gco_A Protein STI-1; structur 98.8 2.5E-07 8.5E-12 66.1 14.1 96 165-262 15-110 (126)
128 4gco_A Protein STI-1; structur 98.8 2E-08 6.9E-13 71.8 8.1 97 22-121 14-110 (126)
129 4f3v_A ESX-1 secretion system 98.8 1.5E-07 5.3E-12 76.1 14.0 123 204-329 108-237 (282)
130 1a17_A Serine/threonine protei 98.8 3.3E-07 1.1E-11 68.8 15.2 127 129-259 15-143 (166)
131 3gw4_A Uncharacterized protein 98.8 9E-08 3.1E-12 74.6 12.4 26 303-328 150-175 (203)
132 3gw4_A Uncharacterized protein 98.8 6.3E-08 2.2E-12 75.5 11.4 85 32-118 3-92 (203)
133 3gyz_A Chaperone protein IPGC; 98.8 1.6E-07 5.6E-12 69.2 12.8 94 235-329 38-133 (151)
134 1na0_A Designed protein CTPR3; 98.8 5.5E-07 1.9E-11 63.7 14.9 95 165-261 11-105 (125)
135 3gyz_A Chaperone protein IPGC; 98.8 2.3E-08 7.8E-13 73.9 7.6 109 44-156 25-133 (151)
136 2c2l_A CHIP, carboxy terminus 98.7 7.6E-08 2.6E-12 79.4 11.2 192 126-329 3-199 (281)
137 1na0_A Designed protein CTPR3; 98.7 6.7E-07 2.3E-11 63.2 15.0 112 234-347 10-123 (125)
138 2lni_A Stress-induced-phosphop 98.7 4.7E-07 1.6E-11 65.0 14.1 116 232-349 15-132 (133)
139 3q7a_A Farnesyltransferase alp 98.7 3.5E-06 1.2E-10 70.6 20.8 176 31-213 64-257 (349)
140 2vyi_A SGTA protein; chaperone 98.7 3.4E-07 1.2E-11 65.4 13.0 95 129-226 14-108 (131)
141 2vgx_A Chaperone SYCD; alterna 98.7 5.7E-08 2E-12 71.7 8.9 98 56-155 20-117 (148)
142 2vyi_A SGTA protein; chaperone 98.7 4.6E-07 1.6E-11 64.7 13.4 116 233-350 12-129 (131)
143 3q7a_A Farnesyltransferase alp 98.7 1.6E-05 5.4E-10 66.6 23.9 32 298-329 300-331 (349)
144 1p5q_A FKBP52, FK506-binding p 98.7 4.8E-07 1.7E-11 76.7 14.7 130 197-327 146-292 (336)
145 2e2e_A Formate-dependent nitri 98.7 6.6E-08 2.3E-12 73.7 8.4 122 31-156 20-144 (177)
146 2e2e_A Formate-dependent nitri 98.7 1.7E-07 5.8E-12 71.4 10.5 121 138-262 21-144 (177)
147 2vgx_A Chaperone SYCD; alterna 98.7 1.7E-07 5.8E-12 69.1 9.7 98 126-226 20-117 (148)
148 1p5q_A FKBP52, FK506-binding p 98.6 7.6E-07 2.6E-11 75.5 14.7 128 127-259 147-291 (336)
149 4b4t_Q 26S proteasome regulato 98.6 4.8E-06 1.7E-10 73.1 20.2 200 27-226 10-244 (434)
150 2fbn_A 70 kDa peptidylprolyl i 98.6 2.7E-08 9.4E-13 77.5 4.8 171 29-224 12-183 (198)
151 4b4t_Q 26S proteasome regulato 98.6 3.5E-06 1.2E-10 74.0 18.2 22 99-120 11-32 (434)
152 2xcb_A PCRH, regulatory protei 98.6 4.4E-07 1.5E-11 66.3 10.2 98 56-155 17-114 (142)
153 4gcn_A Protein STI-1; structur 98.6 4E-07 1.4E-11 65.1 9.6 97 22-120 9-111 (127)
154 4gcn_A Protein STI-1; structur 98.6 1.9E-06 6.5E-11 61.5 12.9 104 165-271 10-119 (127)
155 3upv_A Heat shock protein STI1 98.6 3E-06 1E-10 60.3 14.0 94 166-261 7-100 (126)
156 2xcb_A PCRH, regulatory protei 98.5 1.3E-06 4.3E-11 63.8 11.8 97 127-226 18-114 (142)
157 1elw_A TPR1-domain of HOP; HOP 98.5 5.5E-06 1.9E-10 57.7 14.7 95 129-226 6-100 (118)
158 1elw_A TPR1-domain of HOP; HOP 98.5 6.7E-06 2.3E-10 57.3 15.1 98 163-262 4-101 (118)
159 2fbn_A 70 kDa peptidylprolyl i 98.5 2.7E-06 9.1E-11 66.0 14.1 95 269-364 89-186 (198)
160 2kck_A TPR repeat; tetratricop 98.5 4.8E-07 1.6E-11 62.7 8.9 100 20-121 5-106 (112)
161 3dss_A Geranylgeranyl transfer 98.5 8.5E-05 2.9E-09 61.9 23.2 137 104-245 41-191 (331)
162 3sz7_A HSC70 cochaperone (SGT) 98.5 3.9E-06 1.3E-10 62.9 14.0 96 127-225 11-106 (164)
163 3upv_A Heat shock protein STI1 98.5 3.9E-06 1.3E-10 59.6 12.9 94 235-329 6-101 (126)
164 1hxi_A PEX5, peroxisome target 98.5 1.6E-06 5.3E-11 61.4 10.6 95 271-366 20-116 (121)
165 3q49_B STIP1 homology and U bo 98.5 3.4E-06 1.2E-10 60.9 12.6 99 231-330 7-107 (137)
166 2kck_A TPR repeat; tetratricop 98.5 2.9E-06 9.9E-11 58.6 11.7 96 165-262 8-106 (112)
167 3sz7_A HSC70 cochaperone (SGT) 98.5 1.4E-06 4.7E-11 65.4 10.7 97 57-155 11-107 (164)
168 3q49_B STIP1 homology and U bo 98.5 6.2E-06 2.1E-10 59.5 13.7 96 163-260 9-104 (137)
169 1hxi_A PEX5, peroxisome target 98.5 6E-07 2.1E-11 63.5 7.8 98 22-122 18-115 (121)
170 2dba_A Smooth muscle cell asso 98.5 2.7E-06 9.1E-11 62.3 11.6 101 19-122 26-129 (148)
171 2dba_A Smooth muscle cell asso 98.4 1E-05 3.5E-10 59.0 14.7 96 232-329 27-128 (148)
172 1elr_A TPR2A-domain of HOP; HO 98.4 5E-06 1.7E-10 59.2 12.4 107 235-344 6-121 (131)
173 1elr_A TPR2A-domain of HOP; HO 98.4 2E-06 6.7E-11 61.4 10.2 97 128-226 5-107 (131)
174 3ro3_A PINS homolog, G-protein 98.4 1.2E-06 4E-11 65.2 8.6 62 302-363 91-157 (164)
175 3ro3_A PINS homolog, G-protein 98.4 3.3E-06 1.1E-10 62.7 10.3 132 59-190 11-156 (164)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1E-05 3.5E-10 71.6 14.4 86 269-355 318-405 (457)
177 3dss_A Geranylgeranyl transfer 98.3 0.0004 1.4E-08 57.9 22.6 99 108-210 90-191 (331)
178 1wao_1 Serine/threonine protei 98.3 2.5E-06 8.7E-11 75.8 9.9 84 207-292 15-98 (477)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.6E-05 5.4E-10 70.4 14.6 88 199-288 318-405 (457)
180 2xev_A YBGF; tetratricopeptide 98.3 7.3E-06 2.5E-10 58.4 10.2 93 26-120 7-104 (129)
181 1wao_1 Serine/threonine protei 98.3 1.6E-07 5.5E-12 83.6 1.6 125 23-151 8-134 (477)
182 2xev_A YBGF; tetratricopeptide 98.2 3.7E-05 1.3E-09 54.6 13.2 60 166-226 42-104 (129)
183 3k9i_A BH0479 protein; putativ 98.2 8.9E-07 3E-11 62.2 4.3 84 35-119 4-88 (117)
184 1ihg_A Cyclophilin 40; ppiase 98.2 2.4E-05 8.1E-10 67.1 13.4 89 267-356 272-362 (370)
185 1ihg_A Cyclophilin 40; ppiase 98.2 2.8E-05 9.7E-10 66.6 13.2 120 165-286 225-359 (370)
186 3k9i_A BH0479 protein; putativ 98.2 4.4E-06 1.5E-10 58.6 6.8 84 141-226 4-89 (117)
187 2hr2_A Hypothetical protein; a 98.2 1.5E-05 5.2E-10 58.3 9.6 63 302-364 59-131 (159)
188 3rkv_A Putative peptidylprolyl 98.2 8.3E-06 2.8E-10 60.9 8.6 100 21-121 11-126 (162)
189 2if4_A ATFKBP42; FKBP-like, al 98.1 6.6E-06 2.3E-10 69.7 8.4 146 23-192 181-328 (338)
190 3rkv_A Putative peptidylprolyl 98.1 3.7E-05 1.3E-09 57.3 11.7 28 127-154 11-38 (162)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 7.8E-06 2.7E-10 69.2 8.3 150 197-366 178-330 (338)
192 3n71_A Histone lysine methyltr 98.1 1.2E-05 4.1E-10 71.2 9.1 121 243-363 319-463 (490)
193 1dce_A Protein (RAB geranylger 98.1 0.00055 1.9E-08 62.1 20.1 137 214-353 89-244 (567)
194 1klx_A Cysteine rich protein B 98.1 8.4E-05 2.9E-09 53.7 12.0 109 213-329 10-126 (138)
195 2hr2_A Hypothetical protein; a 98.0 0.00013 4.3E-09 53.4 12.0 96 166-261 14-130 (159)
196 3n71_A Histone lysine methyltr 98.0 7.5E-05 2.6E-09 66.2 12.2 125 137-261 319-463 (490)
197 1dce_A Protein (RAB geranylger 98.0 0.00032 1.1E-08 63.6 16.6 171 36-213 44-241 (567)
198 2l6j_A TPR repeat-containing p 98.0 3.5E-06 1.2E-10 58.2 2.8 63 22-86 5-67 (111)
199 2l6j_A TPR repeat-containing p 97.9 1.2E-05 4E-10 55.5 5.1 92 268-360 4-103 (111)
200 1klx_A Cysteine rich protein B 97.9 0.00066 2.2E-08 48.9 14.2 89 169-263 31-127 (138)
201 3ma5_A Tetratricopeptide repea 97.8 0.0001 3.5E-09 49.8 8.5 63 267-329 6-70 (100)
202 3ma5_A Tetratricopeptide repea 97.8 7.8E-05 2.7E-09 50.4 6.8 67 18-86 4-70 (100)
203 1zu2_A Mitochondrial import re 97.8 3E-05 1E-09 56.6 4.7 95 31-130 12-127 (158)
204 1na3_A Designed protein CTPR2; 97.7 0.00053 1.8E-08 44.9 10.7 61 165-226 11-71 (91)
205 1na3_A Designed protein CTPR2; 97.7 0.00041 1.4E-08 45.4 10.0 79 269-348 10-90 (91)
206 2kat_A Uncharacterized protein 97.7 0.00037 1.3E-08 48.3 9.9 78 251-329 3-82 (115)
207 2kat_A Uncharacterized protein 97.7 0.0007 2.4E-08 46.8 10.7 60 165-225 21-80 (115)
208 3ly7_A Transcriptional activat 97.5 0.0011 3.7E-08 55.6 11.7 74 124-202 274-347 (372)
209 1zu2_A Mitochondrial import re 97.5 0.0003 1E-08 51.3 6.8 36 141-178 16-51 (158)
210 3bee_A Putative YFRE protein; 97.3 0.002 6.7E-08 42.6 8.8 63 267-329 5-72 (93)
211 2kc7_A BFR218_protein; tetratr 97.3 0.00073 2.5E-08 45.2 6.7 60 27-88 6-66 (99)
212 3mkq_A Coatomer beta'-subunit; 97.3 0.0098 3.3E-07 56.6 16.4 102 96-225 633-734 (814)
213 3qww_A SET and MYND domain-con 97.2 0.00074 2.5E-08 58.8 7.4 61 302-362 342-409 (433)
214 3mkq_A Coatomer beta'-subunit; 97.2 0.014 4.9E-07 55.5 17.0 191 100-354 607-802 (814)
215 1wy6_A Hypothetical protein ST 97.2 0.019 6.4E-07 40.0 12.4 141 208-367 17-157 (172)
216 3qwp_A SET and MYND domain-con 97.1 0.0019 6.6E-08 56.2 9.2 89 241-329 295-400 (429)
217 3ly7_A Transcriptional activat 97.1 0.0071 2.4E-07 50.8 12.0 73 196-272 275-347 (372)
218 3bee_A Putative YFRE protein; 97.0 0.004 1.4E-07 41.1 7.9 69 18-88 3-74 (93)
219 2kc7_A BFR218_protein; tetratr 97.0 0.0022 7.5E-08 42.7 6.5 83 274-365 6-91 (99)
220 3qwp_A SET and MYND domain-con 96.9 0.003 1E-07 55.1 8.4 88 205-292 294-395 (429)
221 1wy6_A Hypothetical protein ST 96.8 0.064 2.2E-06 37.4 14.7 149 23-195 7-157 (172)
222 3lvg_A Clathrin heavy chain 1; 96.8 1E-05 3.5E-10 69.3 -7.6 245 19-292 52-315 (624)
223 3qww_A SET and MYND domain-con 96.8 0.0055 1.9E-07 53.3 9.0 63 128-190 341-409 (433)
224 3u64_A Protein TP_0956; tetrat 96.7 0.19 6.4E-06 40.6 18.5 127 106-237 135-281 (301)
225 3mkq_B Coatomer subunit alpha; 96.6 0.12 4E-06 38.3 13.6 98 102-221 15-112 (177)
226 2v5f_A Prolyl 4-hydroxylase su 96.6 0.012 4.2E-07 39.7 7.7 65 266-330 3-76 (104)
227 1pc2_A Mitochondria fission pr 96.5 0.018 6.2E-07 41.5 8.4 79 181-261 16-99 (152)
228 2v5f_A Prolyl 4-hydroxylase su 96.5 0.035 1.2E-06 37.4 9.7 64 128-191 6-74 (104)
229 4h7y_A Dual specificity protei 96.2 0.059 2E-06 38.4 9.6 103 126-231 12-127 (161)
230 3lvg_A Clathrin heavy chain 1; 96.2 0.00017 5.8E-09 62.0 -4.0 216 19-259 81-317 (624)
231 3mkq_B Coatomer subunit alpha; 96.1 0.27 9.1E-06 36.4 16.6 100 137-258 15-114 (177)
232 1pc2_A Mitochondria fission pr 96.1 0.021 7.1E-07 41.2 7.0 84 248-335 13-104 (152)
233 4b4t_P 26S proteasome regulato 95.9 0.79 2.7E-05 40.1 18.3 189 70-260 29-245 (445)
234 3u64_A Protein TP_0956; tetrat 95.9 0.34 1.2E-05 39.1 13.6 94 179-272 179-281 (301)
235 4h7y_A Dual specificity protei 95.4 0.21 7.3E-06 35.6 9.5 102 162-265 12-126 (161)
236 4gns_B Protein CSD3, chitin bi 95.3 0.27 9.2E-06 45.8 12.8 55 307-362 344-398 (754)
237 1nzn_A CGI-135 protein, fissio 95.1 0.17 5.7E-06 35.1 8.3 81 179-261 17-102 (126)
238 4fhn_B Nucleoporin NUP120; pro 95.0 2.6 8.9E-05 41.9 19.6 128 199-328 900-1049(1139)
239 1nzn_A CGI-135 protein, fissio 94.8 0.49 1.7E-05 32.8 10.0 85 71-156 15-103 (126)
240 4ady_A RPN2, 26S proteasome re 94.8 3 0.0001 39.9 22.4 19 208-226 570-588 (963)
241 4gns_B Protein CSD3, chitin bi 94.7 0.34 1.2E-05 45.1 11.8 128 24-154 251-398 (754)
242 1v54_E Cytochrome C oxidase po 94.6 0.51 1.7E-05 30.9 8.9 73 97-171 14-87 (109)
243 3lpz_A GET4 (YOR164C homolog); 94.2 2.1 7E-05 35.5 18.0 191 34-260 9-214 (336)
244 4ady_A RPN2, 26S proteasome re 94.1 3.4 0.00012 39.6 17.0 161 97-262 495-658 (963)
245 4b4t_P 26S proteasome regulato 93.8 3.1 0.00011 36.3 18.0 258 34-292 29-319 (445)
246 2y69_E Cytochrome C oxidase su 93.6 0.86 3E-05 31.7 8.9 76 94-171 54-130 (152)
247 2ff4_A Probable regulatory pro 93.4 0.42 1.4E-05 40.9 9.3 66 204-270 177-247 (388)
248 4fhn_B Nucleoporin NUP120; pro 93.4 7 0.00024 38.9 19.3 146 60-213 815-986 (1139)
249 3txn_A 26S proteasome regulato 93.0 3.8 0.00013 34.9 22.7 243 22-269 20-290 (394)
250 1v54_E Cytochrome C oxidase po 92.4 1.4 4.9E-05 28.9 8.2 42 251-292 28-69 (109)
251 1y8m_A FIS1; mitochondria, unk 92.3 1.8 6.2E-05 30.6 9.4 69 265-335 36-110 (144)
252 2wpv_A GET4, UPF0363 protein Y 92.2 4.2 0.00014 33.4 17.8 136 37-187 13-158 (312)
253 3o48_A Mitochondria fission 1 92.0 1.2 4E-05 31.1 8.0 64 264-329 36-107 (134)
254 3o48_A Mitochondria fission 1 91.9 2.1 7.3E-05 29.8 9.2 67 195-261 37-106 (134)
255 3ffl_A Anaphase-promoting comp 91.6 0.94 3.2E-05 33.0 7.6 122 22-156 21-151 (167)
256 2ff4_A Probable regulatory pro 91.3 2.1 7.3E-05 36.5 10.9 68 236-304 174-249 (388)
257 3esl_A Checkpoint serine/threo 90.1 3.4 0.00012 31.2 9.6 53 281-333 92-148 (202)
258 2y69_E Cytochrome C oxidase su 90.0 2.8 9.7E-05 29.2 8.2 42 251-292 71-112 (152)
259 3ffl_A Anaphase-promoting comp 88.7 5.5 0.00019 29.0 11.6 122 57-192 20-151 (167)
260 1qsa_A Protein (soluble lytic 88.6 14 0.00049 33.7 27.4 310 31-363 16-347 (618)
261 1y8m_A FIS1; mitochondria, unk 88.2 5.3 0.00018 28.3 11.0 21 241-261 85-105 (144)
262 3lpz_A GET4 (YOR164C homolog); 87.9 10 0.00036 31.3 17.1 167 165-363 37-215 (336)
263 4b4t_R RPN7, 26S proteasome re 87.7 7.1 0.00024 33.8 11.6 98 94-191 133-236 (429)
264 4a1g_A Mitotic checkpoint seri 87.3 6.5 0.00022 28.2 9.2 32 302-333 103-134 (152)
265 1zbp_A Hypothetical protein VP 86.7 2.5 8.6E-05 33.6 7.3 57 29-87 5-61 (273)
266 4b4t_R RPN7, 26S proteasome re 85.4 8.8 0.0003 33.2 10.9 94 199-292 132-232 (429)
267 1zbp_A Hypothetical protein VP 85.2 4.4 0.00015 32.3 7.9 120 65-192 5-129 (273)
268 2wvi_A Mitotic checkpoint seri 84.6 9.7 0.00033 27.7 9.0 56 281-336 76-132 (164)
269 3txn_A 26S proteasome regulato 83.1 21 0.00071 30.4 22.7 234 96-336 23-290 (394)
270 2uwj_G Type III export protein 82.4 8 0.00027 25.3 6.8 50 207-262 48-97 (115)
271 2p58_C Putative type III secre 82.0 8.6 0.00029 25.2 7.8 78 178-263 22-99 (116)
272 2zu6_B Programmed cell death p 81.1 13 0.00045 30.4 9.6 65 165-230 168-234 (307)
273 2wpv_A GET4, UPF0363 protein Y 79.2 25 0.00085 28.8 17.9 20 344-363 197-216 (312)
274 3esl_A Checkpoint serine/threo 78.3 20 0.00067 27.1 10.6 56 176-231 92-148 (202)
275 1wdy_A 2-5A-dependent ribonucl 78.0 9.8 0.00033 30.2 8.2 14 279-292 227-240 (285)
276 4b4t_S RPN3, 26S proteasome re 77.5 16 0.00056 32.3 9.5 25 59-83 233-257 (523)
277 3e3v_A Regulatory protein RECX 76.3 14 0.00046 27.4 7.7 52 73-125 49-100 (177)
278 4aez_C MAD3, mitotic spindle c 74.0 14 0.00047 28.5 7.2 53 281-333 130-183 (223)
279 1qsa_A Protein (soluble lytic 73.3 55 0.0019 29.9 32.4 55 307-364 388-442 (618)
280 2d2s_A Exocyst complex compone 68.3 28 0.00097 27.1 8.1 90 239-328 24-119 (235)
281 1wdy_A 2-5A-dependent ribonucl 67.1 44 0.0015 26.2 10.6 214 26-257 7-240 (285)
282 2fe3_A Peroxide operon regulat 66.6 31 0.001 24.4 7.5 67 284-351 6-72 (145)
283 1oai_A Nuclear RNA export fact 66.6 4.2 0.00014 23.7 2.3 25 34-58 33-57 (59)
284 2ijq_A Hypothetical protein; s 66.6 34 0.0012 24.8 7.6 11 282-292 46-56 (161)
285 3kae_A CDC27, possible protein 66.1 37 0.0013 25.0 9.3 83 278-363 43-142 (242)
286 3l6a_A Eukaryotic translation 64.1 64 0.0022 27.1 10.3 78 23-102 14-93 (364)
287 2nsz_A Programmed cell death p 64.1 21 0.00073 24.7 6.1 71 23-95 9-81 (129)
288 3d5l_A Regulatory protein RECX 64.1 42 0.0015 25.8 8.3 49 74-123 93-141 (221)
289 2d2s_A Exocyst complex compone 63.9 45 0.0016 25.9 8.5 89 133-224 24-117 (235)
290 4ets_A Ferric uptake regulatio 61.6 26 0.00087 25.4 6.4 65 286-351 19-85 (162)
291 4a1g_A Mitotic checkpoint seri 60.3 44 0.0015 23.9 9.5 84 38-127 52-136 (152)
292 3eiq_C Programmed cell death p 59.8 77 0.0026 26.6 11.9 56 97-154 59-116 (358)
293 2ion_A PDCD4, programmed cell 59.4 27 0.00094 25.0 6.1 71 23-95 11-83 (152)
294 4gq2_M Nucleoporin NUP120; bet 58.3 1.2E+02 0.0041 29.5 12.1 20 273-292 845-864 (950)
295 1ug3_A EIF4GI, eukaryotic prot 56.1 58 0.002 27.0 8.4 23 97-119 16-38 (339)
296 2wvi_A Mitotic checkpoint seri 55.9 56 0.0019 23.7 10.2 51 182-232 79-130 (164)
297 3hra_A Ankyrin repeat family p 55.2 43 0.0015 24.6 7.1 12 218-229 158-169 (201)
298 2zu6_B Programmed cell death p 52.9 93 0.0032 25.4 11.0 76 271-346 169-248 (307)
299 1zl8_A LIN-7; heterodimer, alp 52.5 28 0.00095 19.2 3.9 19 35-53 7-25 (53)
300 1mzb_A Ferric uptake regulatio 52.0 53 0.0018 22.8 6.6 58 224-282 9-67 (136)
301 3eyy_A Putative iron uptake re 51.2 47 0.0016 23.4 6.2 59 223-283 9-67 (145)
302 2uwj_G Type III export protein 50.6 50 0.0017 21.7 8.0 74 72-153 21-94 (115)
303 2fe3_A Peroxide operon regulat 50.2 64 0.0022 22.7 7.7 59 223-282 12-70 (145)
304 2nsz_A Programmed cell death p 50.1 60 0.002 22.4 7.6 21 272-292 11-31 (129)
305 2b7e_A PRE-mRNA processing pro 49.8 17 0.00059 21.0 2.9 34 316-349 2-36 (59)
306 2p58_C Putative type III secre 49.3 53 0.0018 21.6 8.9 74 72-153 22-95 (116)
307 3eyy_A Putative iron uptake re 49.2 51 0.0018 23.2 6.1 62 288-351 7-68 (145)
308 3jxi_A Vanilloid receptor-rela 48.4 11 0.00037 29.7 2.7 188 172-365 11-252 (260)
309 2w57_A Ferric uptake regulatio 48.0 60 0.0021 23.0 6.4 60 223-283 7-67 (150)
310 4ets_A Ferric uptake regulatio 47.8 35 0.0012 24.7 5.2 43 170-212 39-83 (162)
311 3eiq_C Programmed cell death p 47.3 1.3E+02 0.0043 25.3 17.3 204 23-232 56-287 (358)
312 2ion_A PDCD4, programmed cell 47.2 75 0.0026 22.7 8.0 63 166-229 12-76 (152)
313 2w57_A Ferric uptake regulatio 46.3 60 0.0021 23.0 6.1 62 289-351 6-68 (150)
314 3ygs_P Procaspase 9; apoptosis 46.2 41 0.0014 21.8 4.8 38 106-147 51-88 (97)
315 2o03_A Probable zinc uptake re 46.0 36 0.0012 23.5 4.8 47 305-351 15-61 (131)
316 4fke_A Aminopeptidase N; zinc 45.9 2.2E+02 0.0074 27.6 17.6 157 167-329 690-860 (909)
317 3mwm_A ZUR, putative metal upt 45.4 32 0.0011 24.1 4.5 48 304-351 17-64 (139)
318 2xig_A Ferric uptake regulatio 45.3 79 0.0027 22.4 7.4 64 287-351 14-77 (150)
319 3mv2_A Coatomer subunit alpha; 44.4 1.3E+02 0.0045 24.7 12.1 57 302-373 209-265 (325)
320 2qx5_A Nucleoporin NIC96; mRNA 44.0 2E+02 0.0067 26.6 12.2 164 24-189 356-564 (661)
321 4b4t_S RPN3, 26S proteasome re 43.7 1.8E+02 0.006 25.9 11.9 68 125-192 229-299 (523)
322 2f6m_A Suppressor protein STP2 42.7 41 0.0014 19.9 3.8 45 23-69 4-48 (65)
323 1bpo_A Protein (clathrin); cla 42.1 1.8E+02 0.006 25.5 12.0 140 177-326 343-482 (494)
324 1k1a_A B-cell lymphoma 3-encod 41.9 1.1E+02 0.0038 23.1 8.9 22 172-193 15-36 (241)
325 2xig_A Ferric uptake regulatio 41.8 91 0.0031 22.1 7.1 44 239-282 32-75 (150)
326 3bqo_A Telomeric repeat-bindin 41.4 94 0.0032 23.3 6.4 23 98-120 123-145 (211)
327 1ug3_A EIF4GI, eukaryotic prot 41.2 86 0.003 26.0 7.2 71 23-95 13-84 (339)
328 1mzb_A Ferric uptake regulatio 40.8 47 0.0016 23.1 4.8 60 290-350 8-68 (136)
329 4aez_C MAD3, mitotic spindle c 40.5 1.2E+02 0.0042 23.3 9.0 50 250-299 131-184 (223)
330 3l6a_A Eukaryotic translation 40.1 1.7E+02 0.0057 24.6 12.2 25 96-120 16-40 (364)
331 2cos_A Serine/threonine protei 39.7 36 0.0012 19.2 3.1 38 320-362 10-49 (54)
332 3b7b_A Euchromatic histone-lys 39.0 73 0.0025 24.2 6.3 15 312-326 219-233 (237)
333 1n11_A Ankyrin; clathrin, BAND 38.9 1.8E+02 0.0062 24.7 9.5 84 27-117 17-102 (437)
334 3bu8_A Telomeric repeat-bindin 38.6 83 0.0028 24.0 5.8 21 308-328 122-142 (235)
335 2fu4_A Ferric uptake regulatio 37.4 70 0.0024 19.5 6.8 62 289-351 6-68 (83)
336 2r9g_A AAA ATPase, central reg 37.0 1.3E+02 0.0046 22.6 10.0 37 175-212 26-62 (204)
337 4gq2_M Nucleoporin NUP120; bet 36.5 3.1E+02 0.011 26.7 13.2 108 133-247 816-950 (950)
338 2ijq_A Hypothetical protein; s 34.3 1.3E+02 0.0045 21.7 8.1 52 139-191 44-103 (161)
339 3e3v_A Regulatory protein RECX 33.6 1.4E+02 0.0048 21.9 10.3 48 216-264 51-98 (177)
340 2o03_A Probable zinc uptake re 33.5 69 0.0024 22.0 4.7 45 239-283 16-60 (131)
341 3bu8_A Telomeric repeat-bindin 33.1 1.6E+02 0.0056 22.5 11.2 17 34-50 32-48 (235)
342 3pvs_A Replication-associated 32.2 2.5E+02 0.0085 24.3 11.8 28 161-190 192-219 (447)
343 2rg8_A Programmed cell death p 31.9 87 0.003 22.7 5.1 26 23-48 12-37 (165)
344 3c1d_A Protein ORAA, regulator 31.9 1.4E+02 0.0048 21.3 11.3 50 179-230 46-95 (159)
345 2dod_A Transcription elongatio 31.6 52 0.0018 20.6 3.3 37 36-73 15-51 (82)
346 1n11_A Ankyrin; clathrin, BAND 31.5 2.4E+02 0.0081 23.9 9.1 115 63-187 17-134 (437)
347 3kea_A K1L; tropism, ANK repea 31.3 1.2E+02 0.0039 24.1 6.4 179 170-359 35-216 (285)
348 3mwm_A ZUR, putative metal upt 30.7 63 0.0021 22.6 4.1 46 238-283 18-63 (139)
349 3qil_A Clathrin heavy chain 1; 30.4 62 0.0021 22.1 3.6 56 92-150 32-87 (125)
350 1uzc_A Hypothetical protein FL 30.1 57 0.0019 19.7 3.2 37 36-73 13-49 (71)
351 3kae_A CDC27, possible protein 29.8 1.7E+02 0.0058 21.6 11.2 36 331-366 202-239 (242)
352 3qil_A Clathrin heavy chain 1; 29.7 65 0.0022 22.0 3.6 24 62-85 37-60 (125)
353 2pnn_A Transient receptor pote 29.7 96 0.0033 24.2 5.6 21 342-362 237-257 (273)
354 3t5v_B Nuclear mRNA export pro 29.7 94 0.0032 27.1 5.7 62 303-364 179-249 (455)
355 3hra_A Ankyrin repeat family p 29.5 1.6E+02 0.0055 21.3 8.3 160 29-197 10-172 (201)
356 2dzn_A Probable 26S proteasome 28.4 1.2E+02 0.0041 22.7 5.8 19 29-47 7-25 (228)
357 3bge_A Predicted ATPase; struc 28.1 1.9E+02 0.0066 21.7 9.6 38 175-212 19-56 (201)
358 2crb_A Nuclear receptor bindin 27.5 94 0.0032 19.9 3.9 18 340-357 20-37 (97)
359 3ctd_A Putative ATPase, AAA fa 27.5 2E+02 0.007 21.8 9.3 55 175-229 47-106 (213)
360 3rjo_A Endoplasmic reticulum a 27.4 2.9E+02 0.0099 23.5 24.8 211 107-329 125-369 (419)
361 1wty_A Hypothetical protein TT 27.0 1.4E+02 0.005 20.0 5.6 75 248-329 3-81 (119)
362 1k1a_A B-cell lymphoma 3-encod 26.4 2.1E+02 0.007 21.5 8.6 19 29-47 14-32 (241)
363 2dzn_A Probable 26S proteasome 26.3 1.9E+02 0.0064 21.5 6.7 53 65-118 7-59 (228)
364 3pvs_A Replication-associated 26.3 3.2E+02 0.011 23.7 11.7 55 210-264 267-326 (447)
365 2bn5_A PSI; nuclear protein, s 25.4 70 0.0024 15.8 3.2 23 341-363 8-30 (33)
366 3b7b_A Euchromatic histone-lys 25.2 2.2E+02 0.0074 21.3 8.0 20 98-117 80-99 (237)
367 2cwy_A Hypothetical protein TT 25.1 66 0.0022 20.7 3.0 47 280-328 13-67 (94)
368 3ldz_A STAM-1, signal transduc 25.1 1.8E+02 0.0061 20.3 8.4 66 3-70 5-72 (140)
369 3ltm_A Alpha-REP4; protein eng 25.0 2.1E+02 0.0071 21.1 19.3 92 231-328 93-184 (211)
370 1bpo_A Protein (clathrin); cla 24.7 3.6E+02 0.012 23.7 10.8 139 212-363 343-484 (494)
371 3ygs_P Procaspase 9; apoptosis 24.7 1.4E+02 0.0049 19.1 4.9 36 315-354 52-87 (97)
372 3ljn_A Hypothetical protein; a 24.3 2E+02 0.0067 23.6 6.8 79 277-360 179-266 (364)
373 2yru_A Steroid receptor RNA ac 23.8 1.7E+02 0.0058 19.8 5.0 20 207-226 70-89 (118)
374 2rfa_A Transient receptor pote 23.5 2.3E+02 0.0079 21.1 9.0 24 206-229 159-182 (232)
375 3mv2_A Coatomer subunit alpha; 23.3 3.1E+02 0.011 22.5 10.0 28 129-156 209-236 (325)
376 2keb_A DNA polymerase subunit 22.8 1.6E+02 0.0056 19.1 5.6 23 256-278 32-54 (101)
377 3mkr_B Coatomer subunit alpha; 22.7 3.2E+02 0.011 22.4 12.5 57 302-373 200-256 (320)
378 2ko4_A Mediator of RNA polymer 22.6 95 0.0033 19.2 3.1 30 158-187 31-60 (81)
379 1s6c_A KV4 potassium channel-i 22.4 2.1E+02 0.0073 20.3 10.0 148 36-189 19-182 (183)
380 3bqo_A Telomeric repeat-bindin 22.4 1.5E+02 0.0052 22.3 4.8 48 37-86 94-146 (211)
381 2chq_A Replication factor C sm 22.2 3E+02 0.01 21.9 13.7 19 247-265 241-260 (319)
382 3ltm_A Alpha-REP4; protein eng 22.1 2.4E+02 0.0082 20.7 18.5 48 197-248 125-172 (211)
383 2p22_A Suppressor protein STP2 21.5 1.2E+02 0.004 22.3 4.0 48 20-69 110-157 (174)
384 2p1h_A APAF-1, apoptotic prote 21.1 1.7E+02 0.0057 18.5 6.3 60 77-144 25-84 (94)
385 1bd8_A P19INK4D CDK4/6 inhibit 21.0 2.1E+02 0.0071 19.6 7.4 18 29-46 7-24 (156)
386 2jp7_A MRNA export factor MEX6 20.7 43 0.0015 19.2 1.3 23 34-58 32-54 (57)
387 1wgl_A TOLL-interacting protei 20.5 1.2E+02 0.0043 17.4 3.3 22 105-126 36-57 (59)
388 4g8k_A 2-5A-dependent ribonucl 20.1 3.4E+02 0.012 21.8 13.6 77 276-360 244-323 (337)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-33 Score=255.24 Aligned_cols=343 Identities=9% Similarity=-0.032 Sum_probs=226.4
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCC--------------CCccchhhHHHHHHHHHhcCChHHHHHHHHH
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLG--------------RFRTNTGIYTGTVQRLANAKRFRWIEEILEH 82 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 82 (377)
.++++.+++.++.+|.+.|++++|+++|+++.... +.+++..+|..++.++.+.|++++|+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36788899999999999999999999998543221 2345688999999999999999999999999
Q ss_pred hhhhcCCCccch-------------------------------------hHHHHHHHHccCCHHHHHHHHHhcCCCCCCc
Q 042154 83 QKQYKDISKEGF-------------------------------------TARLIALYGKAAMFENARKVFDEMPGRNCEQ 125 (377)
Q Consensus 83 ~~~~~~~~~~~~-------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 125 (377)
+.+.++.....+ ++.++..|.+.|++++|.++|+++.+. ++
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 987653322211 111244556777888888888888765 47
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcC--------------------------------CCcCHHHHHHHHHHH
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG--------------------------------IEPDLVSYNTIIKAF 173 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~p~~~~~~~l~~~~ 173 (377)
+..+++.++.+|.+.|++++|+.+|+++.+... .+.+..+++.++..|
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 788888888888888888888888888764310 122344555556666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042154 174 VDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKAL 253 (377)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (377)
.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665542 2245566666666666666666666666666543 235556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---h----cCCCCC--HHHHHHHHHHHHhcCChHHHHHHHH
Q 042154 254 ELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---K----SGCGMN--KAIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 254 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
++|+++.+.. +.+..+|+.++..|.+.|++++|.++++ . .+..|+ ..+|..++.+|.+.|++++|.++|+
T Consensus 462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666665542 2345666666666666666666666666 1 144555 5566666666666666666666666
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 325 RTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
++.+.+. .+..+|..++.+|.+.|++++|.++++++.+..
T Consensus 541 ~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 541 QGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 6666542 255666666666666666666666666665544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-32 Score=248.38 Aligned_cols=340 Identities=11% Similarity=0.022 Sum_probs=262.0
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
++...|+.++..+.+.|++++|+.+|+++.. ..|+..++..++..|.+.|++++|.++++++... +++...++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 5677899999999999999999999999985 3567789999999999999999999999988654 4556677889
Q ss_pred HHHHHccCCHHHHHHHHHhcCCC---------------CCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcC-----
Q 042154 99 IALYGKAAMFENARKVFDEMPGR---------------NCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG----- 158 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 158 (377)
+.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++.+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999964332 3345788999999999999999999999988754310
Q ss_pred ----------------------------------------------------------------CCcCHHHHHHHHHHHH
Q 042154 159 ----------------------------------------------------------------IEPDLVSYNTIIKAFV 174 (377)
Q Consensus 159 ----------------------------------------------------------------~~p~~~~~~~l~~~~~ 174 (377)
.+++..+++.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 1266778889999999
Q ss_pred HcCCHHHHHHHHHHHHHCCC---------------------------------CCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEKKGI---------------------------------RLDLITFNTLLLGFYSNGRFADAEKIW 221 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (377)
+.|++++|.++|+++.+.+. +.+..++..++..|.+.|++++|.++|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999876432 124556666777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCC
Q 042154 222 ETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMN 299 (377)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~ 299 (377)
+++.+.. +.+..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+ ....+.+
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7776643 2356677777777777777777777777777653 3356677777777777777777777777 1112346
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 300 KAIFKLLVPFVCEKGDLDFAFNLCKRTFSE----RCLVD--QAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 677777777888888888888888777765 44565 5677778888888888888888887776654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.6e-34 Score=252.53 Aligned_cols=205 Identities=19% Similarity=0.233 Sum_probs=174.7
Q ss_pred HHHHHHHhhhhcCCC-ccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC---------hhH
Q 042154 76 IEEILEHQKQYKDIS-KEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK---------FDE 145 (377)
Q Consensus 76 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 145 (377)
+..+.+++.+.+... +...++.+|.+|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344445555554332 3445677899999999999999999999999999999999999999987664 578
Q ss_pred HHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042154 146 VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 146 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (377)
|.++|++|... |+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 89 A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999776 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042154 226 NMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNE 281 (377)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 281 (377)
+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999988753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.7e-33 Score=247.75 Aligned_cols=182 Identities=16% Similarity=0.235 Sum_probs=110.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR---------FADAEKIWETMVNMNVRPNVRSY 236 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 236 (377)
++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. ++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444455555555555555555555555555555555555555544332 45566666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhc
Q 042154 237 NARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFVCEK 313 (377)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~ 313 (377)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+ ..|+.||..+|++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666 556666666666666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 042154 314 GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (377)
|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.9e-28 Score=212.99 Aligned_cols=339 Identities=12% Similarity=-0.001 Sum_probs=291.8
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|.++..+..+...+.+.|++++|...++...+.. |.+..+|..+...+.+.|++++|++.|+++....+. ....+..
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 106 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYIN 106 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHH
Confidence 4566778888888999999999999999988765 678889999999999999999999999999887533 3344557
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
+..++.+.|++++|.+.|+++.+.. |.+...+..+...+...|++++|...|+++.+. .+.+..+|..+...+...|
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998765 335667778888899999999999999999764 2334678999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
++++|...|+++.+.+. .+...+..+...+...|++++|...|++..... +.+..++..+...+...|++++|+..|+
T Consensus 184 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998753 367889999999999999999999999998764 3457889999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 042154 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ 335 (377)
Q Consensus 258 ~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 335 (377)
++.+.+ +.+..++..+..++.+.|++++|.+.++ ....+.+..++..+...+.+.|++++|.+.++++.+.. +.+.
T Consensus 262 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 339 (388)
T 1w3b_A 262 RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFA 339 (388)
T ss_dssp HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCH
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcH
Confidence 999863 3357789999999999999999999999 22235678899999999999999999999999998864 3367
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 336 APLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
.++..++.+|.+.|++++|.+.++++.+..+
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7899999999999999999999999987654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-26 Score=203.17 Aligned_cols=324 Identities=12% Similarity=0.038 Sum_probs=279.1
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA 96 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (377)
.|.++..|..+...+.+.|++++|+..|+++.+.. |.+..+|..+...+...|++++|.+.++++.+..+. ....+.
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 139 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRS 139 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 45678899999999999999999999999998765 556778999999999999999999999999887533 344555
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHc
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDK 176 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 176 (377)
.+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|+..|+++.+. .+.+...|..+...+...
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHc
Confidence 78899999999999999999998764 446789999999999999999999999999764 133456888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELV 256 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (377)
|++++|...++++.+... .+..++..+..+|.+.|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|...|
T Consensus 217 ~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987643 367889999999999999999999999999875 345788999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 042154 257 GEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD 334 (377)
Q Consensus 257 ~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 334 (377)
+++.+. .+.+..++..+...+...|++++|.+.++ .....| +..++..+..++.+.|++++|.+.|+++.+..+. +
T Consensus 295 ~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~ 372 (388)
T 1w3b_A 295 NTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-F 372 (388)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-C
T ss_pred HHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 999986 35578899999999999999999999999 444444 5778999999999999999999999999986433 5
Q ss_pred hhhHHHHHHHHHhcCC
Q 042154 335 QAPLQLVVDRLAKELR 350 (377)
Q Consensus 335 ~~~~~~l~~~~~~~g~ 350 (377)
...|..+...+...|+
T Consensus 373 ~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 373 ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHhHHHHHHHccC
Confidence 6677777777776653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.2e-25 Score=200.32 Aligned_cols=338 Identities=12% Similarity=-0.002 Sum_probs=275.0
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA 96 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (377)
.|.++..+..+...+.+.|++++|+..|+.+.+.. +.+..++..+..++...|++++|++.++++.+..+. ....+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 98 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARL 98 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 34567789999999999999999999999998765 667889999999999999999999999999987543 345556
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccH---HHHHHH------------HHHHHhCCChhHHHHHHHhchhhcCCCc
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTV---LSFNAL------------LGACVNSKKFDEVDGLFKDLPHKLGIEP 161 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p 161 (377)
.++.+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|+..|+++... .+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 79999999999999999999998875 2334 555555 44488999999999999999764 244
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--
Q 042154 162 DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNAR-- 239 (377)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 239 (377)
+..++..+..++.+.|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...|+++.... +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 67789999999999999999999999998763 3478899999999999999999999999998764 2344455444
Q ss_pred ----------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHH
Q 042154 240 ----------LDGLAIEKQTKKALELVGEMRSKEINPD-----VFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAI 302 (377)
Q Consensus 240 ----------~~~~~~~~~~~~a~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~ 302 (377)
...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++ .... +.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence 78899999999999999999885 344 4478889999999999999999999 2223 346789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH------------HHhcC-----CHHHHHHHHHh-hccC
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR------------LAKEL-----RVEEAKELVEL-GKTN 364 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~ 364 (377)
|..+..+|...|++++|.+.++++++..+. +...+..+..+ |...| +.+++.+.+++ +.+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999985433 45566666633 33344 55677777775 4443
Q ss_pred C
Q 042154 365 S 365 (377)
Q Consensus 365 ~ 365 (377)
.
T Consensus 411 ~ 411 (450)
T 2y4t_A 411 H 411 (450)
T ss_dssp C
T ss_pred C
Confidence 3
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.9e-24 Score=192.50 Aligned_cols=318 Identities=10% Similarity=-0.019 Sum_probs=257.3
Q ss_pred HHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhc
Q 042154 39 RLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEM 118 (377)
Q Consensus 39 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 118 (377)
.+...+..+.... |.+...+..++..+.+.|++++|+++|+++....+ .+...+..++.++...|++++|...|+++
T Consensus 10 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444443 66788899999999999999999999999987643 34555667999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH----HHHHHH------------HHHHHHcCCHHHH
Q 042154 119 PGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL----VSYNTI------------IKAFVDKGSLDSA 182 (377)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l------------~~~~~~~~~~~~a 182 (377)
.+.+ +.+..++..+..+|.+.|++++|...|+++... .|+. ..+..+ ...+...|++++|
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8865 456889999999999999999999999999753 4543 455544 4458899999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 183 NTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999864 3478889999999999999999999999998764 457889999999999999999999999999875
Q ss_pred CCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHH-hcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHH
Q 042154 263 EINPDVFTFYAL------------IKGFVNEGNLEEAKRWYN-KSGCGMN-----KAIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 263 g~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~-~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
. +.+...+..+ ...+...|++++|..+++ .....|+ ...+..+..++.+.|++++|+..++
T Consensus 241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 2234445444 788999999999999999 3333454 4478888999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 325 RTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
++.+... .+..++..+..+|...|++++|.+.++++.+..+.
T Consensus 320 ~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 320 EVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9988643 36789999999999999999999999999886543
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-24 Score=193.31 Aligned_cols=339 Identities=12% Similarity=-0.003 Sum_probs=275.6
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc------
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE------ 92 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 92 (377)
|++..|..+..++.+.|++++|+..|+.+.+.+ |.+..+|..+..++...|++++|...|+++....+....
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 578899999999999999999999999998765 667788999999999999999999999988765432111
Q ss_pred ------------------------------------------------------------------------chhHHHHH
Q 042154 93 ------------------------------------------------------------------------GFTARLIA 100 (377)
Q Consensus 93 ------------------------------------------------------------------------~~~~~l~~ 100 (377)
..+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 11112223
Q ss_pred HHH---ccCCHHHHHHHHHhcCC-----C--CC------CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHH
Q 042154 101 LYG---KAAMFENARKVFDEMPG-----R--NC------EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLV 164 (377)
Q Consensus 101 ~~~---~~~~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 164 (377)
.+. +.|++++|...|+++.+ . .. +.+..++..+...+...|++++|...|+++... .|+..
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~ 271 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVN 271 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHH
Confidence 333 37899999999998876 3 10 234567888889999999999999999998765 34477
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLA 244 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (377)
++..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHH
Confidence 888899999999999999999999988743 367788899999999999999999999999875 345678888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----hcCCCCC----HHHHHHHHHHHHh---c
Q 042154 245 IEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN----KSGCGMN----KAIFKLLVPFVCE---K 313 (377)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~----~~~~~~l~~~~~~---~ 313 (377)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++ .....++ ...+..+..++.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999998752 3356788889999999999999999998 1111222 3478888999999 9
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 314 GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
|++++|.+.++++.+.... +..++..+..+|.+.|++++|.+.++++.+..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp THHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999999999999987543 677888999999999999999999999887654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.3e-23 Score=187.50 Aligned_cols=338 Identities=11% Similarity=0.041 Sum_probs=276.3
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
...+......+.+.|++++|+..|+++.+.. |+..+|..+..++...|++++|++.++++.+..+. +...+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHH
Confidence 3567778889999999999999999998765 68899999999999999999999999999987643 3445557999
Q ss_pred HHHccCCHHHHHHHHHhcCCCCC---------------------------------------------------------
Q 042154 101 LYGKAAMFENARKVFDEMPGRNC--------------------------------------------------------- 123 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~~~--------------------------------------------------------- 123 (377)
++...|++++|...|+++...+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999998765431
Q ss_pred ---------------------CccHHHHHHHHHHHHh---CCChhHHHHHHHhchh-----hcCC-------CcCHHHHH
Q 042154 124 ---------------------EQTVLSFNALLGACVN---SKKFDEVDGLFKDLPH-----KLGI-------EPDLVSYN 167 (377)
Q Consensus 124 ---------------------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~p~~~~~~ 167 (377)
+.+...+......+.. .|++++|+..|+++.. .... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 0113333334444443 8999999999999876 1001 22355788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 168 TIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK 247 (377)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (377)
.+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999987543 8889999999999999999999999999875 346678899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-h-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 042154 248 QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-K-SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKR 325 (377)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 325 (377)
++++|...++++.+.. +.+...+..+...+...|++++|..+++ . ...+.+...+..+...+...|++++|.+.+++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999863 3356788899999999999999999999 2 22233567888999999999999999999999
Q ss_pred HHhcCCC-CC----hhhHHHHHHHHHh---cCCHHHHHHHHHhhccCCc
Q 042154 326 TFSERCL-VD----QAPLQLVVDRLAK---ELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 326 ~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 366 (377)
+.+.... ++ ...+..+..++.. .|++++|.+.++++.+..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 9876432 11 3388899999999 9999999999999877543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.2e-22 Score=185.04 Aligned_cols=340 Identities=11% Similarity=0.067 Sum_probs=254.1
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccc----
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEG---- 93 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 93 (377)
|.++..+..+..++.+.|++++|++.|+++.+.+ |.+..++..+..++...|++++|++.++.+...+...+..
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 133 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 4466777888888888888888888888877665 5566777778888888888888887775332111100000
Q ss_pred --------------------------------------------------------------hhHHHHHHHHc-------
Q 042154 94 --------------------------------------------------------------FTARLIALYGK------- 104 (377)
Q Consensus 94 --------------------------------------------------------------~~~~l~~~~~~------- 104 (377)
+...+...+..
T Consensus 134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (537)
T 3fp2_A 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213 (537)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHH
Confidence 11112222111
Q ss_pred -cCCHHHHHHHHHhcCCCCCCcc-------HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHc
Q 042154 105 -AAMFENARKVFDEMPGRNCEQT-------VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDK 176 (377)
Q Consensus 105 -~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 176 (377)
.|++++|..+|+++.+.. +.+ ..++..+...+...|++++|...|++.... .|+..++..+...+...
T Consensus 214 a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHh
Confidence 136777888888877754 222 235666777888999999999999998765 56677888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELV 256 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (377)
|++++|...++++.+... .+..++..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+
T Consensus 290 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987643 367889999999999999999999999998765 335678888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----h--c-CCCCCHHHHHHHHHHHHhc----------CChHH
Q 042154 257 GEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-----K--S-GCGMNKAIFKLLVPFVCEK----------GDLDF 318 (377)
Q Consensus 257 ~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-----~--~-~~~~~~~~~~~l~~~~~~~----------g~~~~ 318 (377)
+++.+.. +.+...+..+...+...|++++|.+.++ . . ........+.....++... |++++
T Consensus 368 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 368 NETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA 446 (537)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence 9998863 3456788889999999999999999998 1 1 1111223345556677777 99999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 319 AFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
|...|+++.+.... +...+..+..+|.+.|++++|.+.++++.+..+.
T Consensus 447 A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 447 AIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999987543 6778999999999999999999999998876543
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=6.1e-22 Score=170.61 Aligned_cols=318 Identities=11% Similarity=-0.010 Sum_probs=245.8
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLI 99 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (377)
++..+..+...+...|++++|+..|+.+.+.. |.+..++..+...+...|++++|++.++++.+..+.. ...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-TAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-chHHHHHH
Confidence 45678888999999999999999999998765 6678899999999999999999999999998875433 35555799
Q ss_pred HHHHccCCHHHHHHHHHhcCCCCCC---ccHHHHHHH------------HHHHHhCCChhHHHHHHHhchhhcCCCcCHH
Q 042154 100 ALYGKAAMFENARKVFDEMPGRNCE---QTVLSFNAL------------LGACVNSKKFDEVDGLFKDLPHKLGIEPDLV 164 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 164 (377)
..+...|++++|...|++..+.. + .+...+..+ ...+...|++++|+..++++.+. .+.+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 155 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAE 155 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchH
Confidence 99999999999999999998875 2 244455444 57788899999999999988764 234566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH-------
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYN------- 237 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 237 (377)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.. +.+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 88888889999999999999999988774 3477888889999999999999999999888754 22333332
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH-hcC-CCCCHHHHHHH
Q 042154 238 -----ARLDGLAIEKQTKKALELVGEMRSKEINPDV----FTFYALIKGFVNEGNLEEAKRWYN-KSG-CGMNKAIFKLL 306 (377)
Q Consensus 238 -----~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~-~~~-~~~~~~~~~~l 306 (377)
.+...+.+.|++++|...++++.+... .+. ..+..+..++...|++++|.+.++ ... .+.+..++..+
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 225667888999999999988887532 122 234457778888899999999888 222 23367788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 042154 307 VPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347 (377)
Q Consensus 307 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (377)
..++...|++++|.+.|+++.+..+. +...+..+..+...
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 88888999999999999988875432 45555555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.5e-21 Score=166.77 Aligned_cols=303 Identities=11% Similarity=0.003 Sum_probs=250.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 042154 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLG 135 (377)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 135 (377)
++..+..+...+...|++++|++.++++.+..+. +...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4567888899999999999999999999887544 34455579999999999999999999988764 346788999999
Q ss_pred HHHhCCChhHHHHHHHhchhhcCCCc----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 042154 136 ACVNSKKFDEVDGLFKDLPHKLGIEP----DLVSYNTI------------IKAFVDKGSLDSANTLLYEMEKKGIRLDLI 199 (377)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 199 (377)
.+...|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++++.+... .+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 155 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAE 155 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchH
Confidence 999999999999999998743 45 33445444 5788999999999999999998743 4788
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------
Q 042154 200 TFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY------- 272 (377)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~------- 272 (377)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 89999999999999999999999999875 4577899999999999999999999999998753 22333332
Q ss_pred -----HHHHHHHhcCCHHHHHHHHH-hcCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 042154 273 -----ALIKGFVNEGNLEEAKRWYN-KSGCGMN-K----AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLV 341 (377)
Q Consensus 273 -----~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (377)
.+...+...|++++|...++ .....|+ . ..+..+..++...|++++|.+.++++.+.... ++.++..+
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 312 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 23667889999999999999 2222333 3 23556778999999999999999999987433 77899999
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 342 VDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 342 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
..++...|++++|.+.++++.+..+.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999987653
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=7.2e-21 Score=173.23 Aligned_cols=337 Identities=13% Similarity=0.089 Sum_probs=261.0
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLI 99 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (377)
....+..+...+.+.|++++|+..|+.+.+.. |.+..+|..+..++...|++++|++.++++....+. +...+..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 35678888999999999999999999998876 678889999999999999999999999999887644 344455799
Q ss_pred HHHHccCCHHHHHHHHHhcCCCCCC------------------------------------ccHH---------------
Q 042154 100 ALYGKAAMFENARKVFDEMPGRNCE------------------------------------QTVL--------------- 128 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------------~~~~--------------- 128 (377)
.++...|++++|...|+.+....-. |+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999999644221100 0000
Q ss_pred ---------------HHHHHHHHHHh--------CCChhHHHHHHHhchhhcCCCcC--------HHHHHHHHHHHHHcC
Q 042154 129 ---------------SFNALLGACVN--------SKKFDEVDGLFKDLPHKLGIEPD--------LVSYNTIIKAFVDKG 177 (377)
Q Consensus 129 ---------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~~ 177 (377)
....+...+.. .+++++|..+|+++.+. .|+ ..++..+...+...|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 11111111111 14788899999888754 343 235777778889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
++++|...++.+.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999863 457888899999999999999999999998765 3467889999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-h-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---
Q 042154 258 EMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-K-SGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL--- 332 (377)
Q Consensus 258 ~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 332 (377)
++.+.. +.+...+..+...+...|++++|..+++ . ...+.+...+..+...+...|++++|.+.|+++.+....
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 998863 2346788889999999999999999999 2 222345678888999999999999999999998876421
Q ss_pred --CChhhHHHHHHHHHhc----------CCHHHHHHHHHhhccCCc
Q 042154 333 --VDQAPLQLVVDRLAKE----------LRVEEAKELVELGKTNSY 366 (377)
Q Consensus 333 --~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 366 (377)
.....+..+..++... |++++|.+.++++.+..+
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 1112244556777777 999999999999887554
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.8e-20 Score=159.52 Aligned_cols=287 Identities=8% Similarity=-0.058 Sum_probs=129.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH
Q 042154 57 TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA 136 (377)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (377)
...+..++..+...|++++|+++++++.+..+... ..+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA-SCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 33344444444444444444444444443322211 112123444444444444444444444322 2233444444444
Q ss_pred HHhCC-ChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHH
Q 042154 137 CVNSK-KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215 (377)
Q Consensus 137 ~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (377)
+...| ++++|...|++.... .+.+...|..+...+...|++++|.+.++++.+.... +...+..+...|...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 44444 444444444444321 1112334444444455555555555555544443211 2333444444555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 042154 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKE--------INPDVFTFYALIKGFVNEGNLEEA 287 (377)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~~~~~~a 287 (377)
+|...+++..+.. +.+...+..+...+...|++++|...+++..+.. .+.....+..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555554433 2234445555555555555555555555544320 012234555555555555555555
Q ss_pred HHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC
Q 042154 288 KRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRL-AKELR 350 (377)
Q Consensus 288 ~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 350 (377)
...++ .... +.+...+..+..++...|++++|.+.++++.+.... +...+..+..++ ...|+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCc
Confidence 55555 1111 223445555555666666666666666655553221 444555555555 33444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.4e-20 Score=160.25 Aligned_cols=294 Identities=11% Similarity=0.004 Sum_probs=242.8
Q ss_pred CCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 16 ATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 16 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
..+.++..+..+...+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|..+++++....+. +...+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHH
Confidence 345677888999999999999999999999998765 566778888889999999999999999999887543 34445
Q ss_pred HHHHHHHHccC-CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHH
Q 042154 96 ARLIALYGKAA-MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV 174 (377)
Q Consensus 96 ~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (377)
..+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 57889999999 9999999999998875 4467889999999999999999999999987641 234567777899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhc
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN--------VRPNVRSYNARLDGLAIE 246 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 246 (377)
..|++++|.+.++++.+... .+...+..+...+...|++++|...+++..+.. .+.....+..+...+...
T Consensus 171 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 99999999999999998743 477889999999999999999999999888631 133457888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHH-HhcCChH
Q 042154 247 KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFV-CEKGDLD 317 (377)
Q Consensus 247 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~-~~~g~~~ 317 (377)
|++++|...+++..+.. +.+...+..+..++...|++++|.+.++ .....| +...+..+..++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999998863 3356788899999999999999999999 444555 667788888777 4556543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.6e-20 Score=162.55 Aligned_cols=291 Identities=9% Similarity=-0.028 Sum_probs=215.4
Q ss_pred HhcCChHHHHH-HHHHhhhhcCCC---ccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCCh
Q 042154 68 ANAKRFRWIEE-ILEHQKQYKDIS---KEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKF 143 (377)
Q Consensus 68 ~~~~~~~~a~~-~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (377)
...|++++|++ .+++........ +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 777665543221 22334468888888888888888888887764 45677888888888888999
Q ss_pred hHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHH---------------HHHHH
Q 042154 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNT---------------LLLGF 208 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 208 (377)
++|+..|+++.+. .+.+..++..+...+...|++++|...++++.+.... +...+.. .+..+
T Consensus 115 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 115 LLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9998888888764 1335668888888888889999999998888876432 2222211 23333
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042154 209 YSNGRFADAEKIWETMVNMNVRP-NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287 (377)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 287 (377)
...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48889999999999998765211 47888999999999999999999999988752 34578899999999999999999
Q ss_pred HHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcCCHHHHH
Q 042154 288 KRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV----------DQAPLQLVVDRLAKELRVEEAK 355 (377)
Q Consensus 288 ~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~ 355 (377)
...++ .... +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999 2222 3467789999999999999999999999998754321 1578999999999999999999
Q ss_pred HHHHhhcc
Q 042154 356 ELVELGKT 363 (377)
Q Consensus 356 ~~~~~~~~ 363 (377)
.++++..+
T Consensus 351 ~~~~~~l~ 358 (368)
T 1fch_A 351 AADARDLS 358 (368)
T ss_dssp HHHTTCHH
T ss_pred HhHHHHHH
Confidence 98876543
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=2.1e-20 Score=161.72 Aligned_cols=233 Identities=12% Similarity=-0.047 Sum_probs=103.6
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
...+..+...+.+.|++++|+..|+.+.+.. +.+..+|..+...+...|++++|++.++++....+. +...+..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 3445555555555555555555555554433 334445555555555555555555555555444321 2223334555
Q ss_pred HHHccCCHHHHHHHHHhcCCCCCCcc-H----------HHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHH
Q 042154 101 LYGKAAMFENARKVFDEMPGRNCEQT-V----------LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI 169 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 169 (377)
+|...|++++|...|+++.+.. |+ . ..+..+...+...|++++|+..|+++.+.....++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 5555555555555555544322 11 1 111222444444455555555555444331111133444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042154 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT 249 (377)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (377)
...+...|++++|.+.++++.+... .+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4455555555555555554444321 234444444445555555555555554444432 12244444444444445555
Q ss_pred HHHHHHHHHHH
Q 042154 250 KKALELVGEMR 260 (377)
Q Consensus 250 ~~a~~~~~~~~ 260 (377)
++|...|+++.
T Consensus 298 ~~A~~~~~~al 308 (365)
T 4eqf_A 298 REAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554444444
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1.9e-20 Score=162.10 Aligned_cols=290 Identities=12% Similarity=0.021 Sum_probs=225.6
Q ss_pred HhhhcccHHHHHH-HHHhcccCCCCcc--chhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccC
Q 042154 30 GIYKENNLKRLVD-KFKKSSDLGRFRT--NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAA 106 (377)
Q Consensus 30 ~~~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (377)
++...|++++|++ .|++......-.| +...+..+...+...|++++|+..++++.+..+. +...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 3445688999999 8887765432222 3567889999999999999999999999887543 4455557999999999
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHH---------------HH
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNT---------------II 170 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~---------------l~ 170 (377)
++++|...|+++.+.. +.+..++..+...+...|++++|...++++... .|+ ...+.. .+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY---TPAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---STTTGGGCC---------------CTT
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 9999999999988765 457889999999999999999999999998764 232 222221 23
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042154 171 KAFVDKGSLDSANTLLYEMEKKGIRL-DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT 249 (377)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (377)
..+...|++++|...++++.+..... +..++..+...|...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 33448999999999999999764322 57889999999999999999999999998764 34678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----hcCC--------CCCHHHHHHHHHHHHhcCCh
Q 042154 250 KKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-----KSGC--------GMNKAIFKLLVPFVCEKGDL 316 (377)
Q Consensus 250 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~--------~~~~~~~~~l~~~~~~~g~~ 316 (377)
++|...|+++.+.. +.+...+..+..+|...|++++|...++ .... .....+|..+..+|...|++
T Consensus 268 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 268 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999998863 3467889999999999999999999999 1111 11267899999999999999
Q ss_pred HHHHHHHHHH
Q 042154 317 DFAFNLCKRT 326 (377)
Q Consensus 317 ~~a~~~~~~~ 326 (377)
++|..++++.
T Consensus 347 ~~A~~~~~~~ 356 (368)
T 1fch_A 347 DAYGAADARD 356 (368)
T ss_dssp GGHHHHHTTC
T ss_pred HhHHHhHHHH
Confidence 9999987643
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=3.1e-20 Score=160.66 Aligned_cols=264 Identities=8% Similarity=-0.107 Sum_probs=207.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHH
Q 042154 95 TARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV 174 (377)
Q Consensus 95 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (377)
+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...+...|++++|+..|+++.+. .+.+..++..+..++.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYT 144 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4468888889999999999999887754 456888889999999999999999999988764 1334678888999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCC---------CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEKKGIR---------LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR-PNVRSYNARLDGLA 244 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 244 (377)
..|++++|...++++.+.... .....+..+...+...|++++|...|+++.+.... ++..++..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 999999999999998875311 01223344578899999999999999999986521 16789999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 042154 245 IEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNL 322 (377)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 322 (377)
..|++++|+..|+++.+.. +.+..++..+..+|...|++++|...++ .....| +..++..+..+|...|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998863 4467899999999999999999999999 222334 578899999999999999999999
Q ss_pred HHHHHhcCCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 323 CKRTFSERCL-----------VDQAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 323 ~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
|+++++.... .+..+|..+..++...|+.+.+.++.++..
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 9999875321 136788999999999999999988877643
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=3.4e-19 Score=151.40 Aligned_cols=262 Identities=10% Similarity=-0.068 Sum_probs=175.8
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+. .+.+..++..+...+...|
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcC
Confidence 4445555555555555555544432 224445555555555555555555555555442 1223445555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHH--------------HH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTL--------------LL-GFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+...
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 666666666665554221 22222222 22 3667788889999888888764 3467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAF 320 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~ 320 (377)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++ .... +.+...+..+..++...|++++|.
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 889999999999998888753 3457788888889999999999999988 2222 346778888999999999999999
Q ss_pred HHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 321 NLCKRTFSERCLV-----------DQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 321 ~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
+.++++.+..... +..++..+..++.+.|++++|.++++++.+..
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 9999998764332 36688889999999999999999998776543
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=1.9e-19 Score=153.00 Aligned_cols=277 Identities=12% Similarity=0.018 Sum_probs=146.8
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
.+...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 95 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAAL 95 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHH
Confidence 355667777788888888888888888887654 556777778888888888888888888887776432 33444467
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHH-HH-HHHHc
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI-IK-AFVDK 176 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~-~~~~~ 176 (377)
...+...|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC-------------------------------------------CCTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHc
Confidence 777788888888888887776543 1122222222000 0000000011 11 13344
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELV 256 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (377)
|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 152 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444555555554444321 134444445555555555555555555544432 223444455555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-------------CHHHHHHHHHHHHhcCChHHHHHH
Q 042154 257 GEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-------------NKAIFKLLVPFVCEKGDLDFAFNL 322 (377)
Q Consensus 257 ~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~ 322 (377)
+++.+.. +.+...+..+..++...|++++|.+.++ .....| +...|..+..++...|++++|..+
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5544431 2234445555555555555555555555 111111 234455555555555555555555
Q ss_pred HHH
Q 042154 323 CKR 325 (377)
Q Consensus 323 ~~~ 325 (377)
+++
T Consensus 309 ~~~ 311 (327)
T 3cv0_A 309 YAQ 311 (327)
T ss_dssp TTC
T ss_pred HHH
Confidence 543
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=9.5e-17 Score=144.30 Aligned_cols=250 Identities=14% Similarity=0.101 Sum_probs=157.3
Q ss_pred CchHHHHHHHHhhh----cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHh----cCChHHHHHHHHHhhhhcCCCc
Q 042154 20 GPKFIGSVIRGIYK----ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN----AKRFRWIEEILEHQKQYKDISK 91 (377)
Q Consensus 20 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 91 (377)
++..+..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .++.++|.++|++....+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 56667777777776 788888888888887654 45567777777777 788888888888877654 2
Q ss_pred cchhHHHHHHHHc----cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHhchhhcCCCcCH
Q 042154 92 EGFTARLIALYGK----AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN----SKKFDEVDGLFKDLPHKLGIEPDL 163 (377)
Q Consensus 92 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~ 163 (377)
......+...|.. .+++++|...|++..+.| +..++..+...|.. .+++++|+..|++..+. + +.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~ 183 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NV 183 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 2233346677766 678888888888777665 45666667777766 66777888877776543 2 45
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHH
Q 042154 164 VSYNTIIKAFVD----KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS----NGRFADAEKIWETMVNMNVRPNVRS 235 (377)
Q Consensus 164 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (377)
..+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 566666666666 667777777777766653 34455555555554 556666666666665543 2334
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 042154 236 YNARLDGLAI----EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNE-----GNLEEAKRWYN 292 (377)
Q Consensus 236 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 292 (377)
+..+...|.. .++.++|+.+|++..+.| +...+..+...|... +++++|..+++
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 4444444444 555555555555555432 233444444444444 45555555554
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=9.2e-17 Score=144.38 Aligned_cols=320 Identities=11% Similarity=-0.008 Sum_probs=266.5
Q ss_pred CCchHHHHHHHHhhh----cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHh----cCChHHHHHHHHHhhhhcCCC
Q 042154 19 TGPKFIGSVIRGIYK----ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN----AKRFRWIEEILEHQKQYKDIS 90 (377)
Q Consensus 19 ~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 90 (377)
-++..+..|...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|++.+++....+
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 145 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--- 145 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 356788888888888 999999999999998765 55667788888888 789999999999988764
Q ss_pred ccchhHHHHHHHHc----cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHhchhhcCCCcC
Q 042154 91 KEGFTARLIALYGK----AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN----SKKFDEVDGLFKDLPHKLGIEPD 162 (377)
Q Consensus 91 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~ 162 (377)
+......+...|.. .++.++|.+.|++..+.| +..++..+...|.. .++.++|..+|++..+. .+
T Consensus 146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~ 218 (490)
T 2xm6_A 146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GD 218 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CC
Confidence 22333457788876 789999999999988875 67888888888888 89999999999998654 35
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHH
Q 042154 163 LVSYNTIIKAFVD----KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS----NGRFADAEKIWETMVNMNVRPNVR 234 (377)
Q Consensus 163 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 234 (377)
...+..+...+.. .+++++|..+|++..+.| +...+..+...|.. .+++++|...|++..+.| +..
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~ 292 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSD 292 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHH
Confidence 6678888888886 889999999999998874 45667777778877 899999999999999875 556
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH-hcCCCCCHHHHHH
Q 042154 235 SYNARLDGLAIE-----KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG---NLEEAKRWYN-KSGCGMNKAIFKL 305 (377)
Q Consensus 235 ~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~-~~~~~~~~~~~~~ 305 (377)
.+..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|.++++ ... ..+...+..
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~~~~~a~~~ 368 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-KGEKAAQFN 368 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-CCCHHHHHH
Confidence 777788888877 89999999999999875 4567777888887766 7899999999 221 246788888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhccCC
Q 042154 306 LVPFVCE----KGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK----ELRVEEAKELVELGKTNS 365 (377)
Q Consensus 306 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 365 (377)
+...|.. .+++++|.+.|++..+.+ ++..+..|...|.+ .++.++|.+.++++.+.+
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9988988 899999999999999865 57788889999998 899999999999998877
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=5.8e-18 Score=141.07 Aligned_cols=276 Identities=11% Similarity=0.009 Sum_probs=210.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCCh
Q 042154 64 VQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKF 143 (377)
Q Consensus 64 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (377)
++-....|++..|+...+......+.........+.++|...|+++.|...++.. -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 4455678999999999888766543332223335789999999999999876552 357788889999999999999
Q ss_pred hHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHH
Q 042154 144 DEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWE 222 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 222 (377)
++|++.++++... +..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+
T Consensus 82 ~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998764 4445 455677777899999999999999987 4578889999999999999999999999
Q ss_pred HHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC
Q 042154 223 TMVNMNVRPNVRSY---NARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM 298 (377)
Q Consensus 223 ~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~ 298 (377)
++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++ .....|
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 998764 553211 12234444568999999999999887 45678889999999999999999999999 233334
Q ss_pred -CHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042154 299 -NKAIFKLLVPFVCEKGDLDF-AFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELV 358 (377)
Q Consensus 299 -~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 358 (377)
+..++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..-|
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHHc
Confidence 67788889999999999876 578999988854 33332 334566677777766544
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.6e-17 Score=138.46 Aligned_cols=274 Identities=9% Similarity=0.070 Sum_probs=191.8
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCccc-hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccC
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFRTN-TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAA 106 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (377)
|+.....|+++.|+..++...... +.+ ......+.+++...|+++.|+..++. . .++....+..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 355667888889988887765433 222 34556677888888888888876543 1 2344455566778888888
Q ss_pred CHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 042154 107 MFENARKVFDEMPGRNC-EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTL 185 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 185 (377)
+.++|.+.++++...+. |-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88999988888776543 33566667777888888999999888876 34667788888888888999999999
Q ss_pred HHHHHHCCCCCCHHhH---HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 186 LYEMEKKGIRLDLITF---NTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 186 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
++++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888763 333211 223344556688899999998888763 567788888888888899999999999888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042154 263 EINPDVFTFYALIKGFVNEGNLEE-AKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFN 321 (377)
Q Consensus 263 g~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 321 (377)
. +-+..++..++..+...|+.++ +.++++ .....|+... +.+...+.+.++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHHHH
Confidence 2 3367778888888888888765 567776 3334454332 2223344444444443
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=5.8e-19 Score=150.69 Aligned_cols=283 Identities=11% Similarity=0.058 Sum_probs=105.6
Q ss_pred hcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHH
Q 042154 33 KENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENAR 112 (377)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 112 (377)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. ++...|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4566777777777662 1236777777777777777777777542 23334445677777777777777
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 113 KVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 766655553 2446667777777777777777665553 245557777777777777777777777765
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042154 193 GIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272 (377)
Q Consensus 193 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 272 (377)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence 35777777777777777777777766 256777777777777777777754444322 2333344
Q ss_pred HHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCC------ChhhHHHHHH
Q 042154 273 ALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE-RCLV------DQAPLQLVVD 343 (377)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~ 343 (377)
.++..|.+.|.+++|..+++ ..+..+ ....|+.+.-.|++- ++++..+.++...+. +++| +...|..+.-
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777 444433 445666666555554 233333333332222 2222 3456777777
Q ss_pred HHHhcCCHHHHHHHHH
Q 042154 344 RLAKELRVEEAKELVE 359 (377)
Q Consensus 344 ~~~~~g~~~~A~~~~~ 359 (377)
.|...|+++.|...+-
T Consensus 291 ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 291 LYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHH
Confidence 7777777777765443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=2e-17 Score=148.04 Aligned_cols=345 Identities=9% Similarity=-0.048 Sum_probs=232.6
Q ss_pred CCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccC----C---CCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcC
Q 042154 16 ATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDL----G---RFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKD 88 (377)
Q Consensus 16 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 88 (377)
+.+.....||.|...+...|++++|++.|++..+. . ..+....+|..+..+|...|++++|...++++.....
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 34455778999999999999999999999887542 0 0123456899999999999999999999988765321
Q ss_pred -------CCccchhHHHHHHHHc--cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH---HHhCCChhHHHHHHHhchhh
Q 042154 89 -------ISKEGFTARLIALYGK--AAMFENARKVFDEMPGRNCEQTVLSFNALLGA---CVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 89 -------~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~ 156 (377)
......+.....++.. .+++++|...|++..+.. |-++..+..+..+ +...++.++|++.+++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1112334344444444 457999999999988764 3345555555444 44567888999999887654
Q ss_pred cCCCc-CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 042154 157 LGIEP-DLVSYNTIIKAFVD----KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRP 231 (377)
Q Consensus 157 ~~~~p-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (377)
.| +..++..+...+.. .+++++|.+.+++...... .+..++..+...|...|++++|...+++..+.. +.
T Consensus 205 ---~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 205 ---NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp ---CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred ---CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 34 44556555555544 4678899999999887643 477889999999999999999999999998765 33
Q ss_pred CHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 232 NVRSYNARLDGLAIE-------------------KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 232 ~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
+..++..+...|... +..+.|...+++..... +.+...+..+...+...|++++|...|+
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 556666666555322 23567888888877652 2345678889999999999999999999
Q ss_pred -hcCCCCCHH----HHHHHHH-HHHhcCChHHHHHHHHHHHhcCC-----------------------CCChhhHHHHHH
Q 042154 293 -KSGCGMNKA----IFKLLVP-FVCEKGDLDFAFNLCKRTFSERC-----------------------LVDQAPLQLVVD 343 (377)
Q Consensus 293 -~~~~~~~~~----~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~ 343 (377)
.....|+.. .+..+.. .+...|++++|+..|++.++... +.+..+|..+..
T Consensus 359 kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 333344432 2233332 34578999999999988876431 235678999999
Q ss_pred HHHhcCCHHHHHHHHHhhccCCce
Q 042154 344 RLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
+|...|++++|.+.|+++.+.+..
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHCC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987643
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=6e-19 Score=150.61 Aligned_cols=266 Identities=12% Similarity=0.151 Sum_probs=136.0
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
+++..|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+++++...+. .++..+.+.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~L 100 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHH
Confidence 55679999999999999999999999653 46678999999999999999999988877764 3445667789
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
+.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|..+ ..|..++.++.+.|+
T Consensus 101 i~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 101 IFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGE 163 (449)
T ss_dssp --------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTC
T ss_pred HHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhcc
Confidence 9999999999999887752 67789999999999999999999999977 259999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
+++|.+.+.++ .++.+|..++.+|...|+++.|......+. +.|+ ....++..|.+.|++++|..+++.
T Consensus 164 yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 164 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988 278999999999999999999966555422 2343 355688999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH-hcCCCC------CHHHHHHHHHHHHhcCChHHHHHH
Q 042154 259 MRSKEINPDVFTFYALIKGFVNE--GNLEEAKRWYN-KSGCGM------NKAIFKLLVPFVCEKGDLDFAFNL 322 (377)
Q Consensus 259 ~~~~g~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~-~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~ 322 (377)
..... +-....|+.|.-.|++- +++.+.++.|. ...++| +...|.-+.-.|.+.++++.|...
T Consensus 233 aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 233 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 98654 44567788887777764 34555555555 555444 355788899999999999988764
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=168.73 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEK---KGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNAR 239 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (377)
..||+++|++|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34677777777777777777777766543 356667777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042154 240 LDGLAIEKQT-KKALELVGEMRSKEINPDVFTFYALIKGFVNE 281 (377)
Q Consensus 240 ~~~~~~~~~~-~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 281 (377)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 7777776663 56667777777777777777777666554443
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.4e-15 Score=136.51 Aligned_cols=201 Identities=6% Similarity=-0.004 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 163 LVSYNTIIKAFVD-------KGSLD-------SANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 163 ~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
...|...+..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+..
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 4455555555554 57766 788888888763223357777888888888888888888888888753
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHH-hcCCCC-CHHHH
Q 042154 229 VRPN--VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKG-FVNEGNLEEAKRWYN-KSGCGM-NKAIF 303 (377)
Q Consensus 229 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~-~~~~~~-~~~~~ 303 (377)
|+ ...|..++..+.+.|++++|..+|++..+.. +.+...|...... +...|+.++|..+|+ .....| +...|
T Consensus 352 --p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 352 --DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 428 (530)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence 43 2467777777777888888888888887752 1122333222222 335788888888888 222223 56777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC--hhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 304 KLLVPFVCEKGDLDFAFNLCKRTFSERCL-VD--QAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 304 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
..++..+.+.|+.++|..+|++++..... |+ ...|...+......|+.+.+..+.+++.+.-+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 88888888888888888888888776422 21 23666677777778888888888877765443
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=164.81 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=124.8
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHhchh--hcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 042154 125 QTVLSFNALLGACVNSKKFDEVDGLFKDLPH--KLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFN 202 (377)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (377)
.-..+|+++|++|++.|++++|..+|++|.+ ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 4466899999999999999999999987642 23899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHH
Q 042154 203 TLLLGFYSNGR-FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD------VFTFYALI 275 (377)
Q Consensus 203 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~------~~~~~~l~ 275 (377)
++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ .-+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999997 478999999999999999999999998766553 444444444 2234443 33444555
Q ss_pred HHHHhcC
Q 042154 276 KGFVNEG 282 (377)
Q Consensus 276 ~~~~~~~ 282 (377)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5565544
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.1e-16 Score=127.62 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CC----HHhH
Q 042154 128 LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR--LD----LITF 201 (377)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 201 (377)
..+..+...+...|++++|+..|++..+. . .+..++..+..++...|++++|.+.++++.+.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 34455555555555555555555555443 2 44445555555555555555555555555442111 01 3455
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042154 202 NTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNE 281 (377)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 281 (377)
..+...+...|++++|...|++..+.. |+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 555555555556666665555555432 331 22334455556666665555531 11234455555555566
Q ss_pred CCHHHHHHHHH-hc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042154 282 GNLEEAKRWYN-KS-GCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359 (377)
Q Consensus 282 ~~~~~a~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 359 (377)
|++++|...++ .. ..+.+...+..+..++...|++++|.+.++++++.... +...+..+..++.+.|++++|.+.++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66666666655 11 11224455555555666666666666666666554322 34555555666666666666666665
Q ss_pred hhccC
Q 042154 360 LGKTN 364 (377)
Q Consensus 360 ~~~~~ 364 (377)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=9.9e-17 Score=127.78 Aligned_cols=199 Identities=11% Similarity=-0.044 Sum_probs=118.1
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|+++..+..+...+.+.|++++|+..|+...+.. |.+...+..+...+.+.|++++|+..+++..+..+... ..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL-GGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHH
Confidence 6777888888888888888888888888887765 66777888888888888888888888888877654333 33345
Q ss_pred HHHHHHcc-----------CCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHH
Q 042154 98 LIALYGKA-----------AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSY 166 (377)
Q Consensus 98 l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 166 (377)
+...+... |++++|+..|++..+.. |-+...+..+...+...|++++|+..|++..+. . .+...+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~ 154 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHH
Confidence 77777766 66666666666555443 223455555555555566666666666555443 2 444555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042154 167 NTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETM 224 (377)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (377)
..+..++...|++++|...|+++.+... .+...+..+..++...|++++|...|++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555566665555555555422 24445555555555555555555555443
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=6.8e-15 Score=133.55 Aligned_cols=338 Identities=8% Similarity=0.007 Sum_probs=242.9
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHH
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTAR 97 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 97 (377)
|-+...|..++.. .+.|++++|..+|+.+.+.. |.+...|...+..+.+.|++++|.++|+++....+ +..++..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p--~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL--HIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC--CHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ChHHHHH
Confidence 5578899999984 78999999999999998864 77888999999999999999999999999998753 4445544
Q ss_pred HHHH-HHccCCHHHHHH----HHHhcCC-CCCC-ccHHHHHHHHHHHHh---------CCChhHHHHHHHhchhhcCCCc
Q 042154 98 LIAL-YGKAAMFENARK----VFDEMPG-RNCE-QTVLSFNALLGACVN---------SKKFDEVDGLFKDLPHKLGIEP 161 (377)
Q Consensus 98 l~~~-~~~~~~~~~A~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~p 161 (377)
.+.. ....|+.++|.+ +|+.... .|.. ++...|...+....+ .|+++.|..+|++..+. ...+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhh
Confidence 5542 334577766654 7776543 2433 456788888776655 68899999999998762 1111
Q ss_pred CHHHHHHHHHHHH-------------HcCCHH------------------------------------------------
Q 042154 162 DLVSYNTIIKAFV-------------DKGSLD------------------------------------------------ 180 (377)
Q Consensus 162 ~~~~~~~l~~~~~-------------~~~~~~------------------------------------------------ 180 (377)
....|........ +.++++
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 1223322111000 011122
Q ss_pred ------------HHHHHHHHHHHCCCCCCHHhHHHHHHHHHc-------CCCHH-------HHHHHHHHHHhCCCCCCHH
Q 042154 181 ------------SANTLLYEMEKKGIRLDLITFNTLLLGFYS-------NGRFA-------DAEKIWETMVNMNVRPNVR 234 (377)
Q Consensus 181 ------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~ 234 (377)
.+..+|+++.... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 3334444444431 2245566666666664 68876 8999999988632344678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC-HHHHHHHHHH-
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPD-V-FTFYALIKGFVNEGNLEEAKRWYN-KSGCGMN-KAIFKLLVPF- 309 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-~~~~~~l~~~- 309 (377)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|+ .....|+ ...|...+..
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 8999999999999999999999999985 454 3 578888888889999999999999 4443443 3333332222
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
+...|++++|..+|++.++..+. ++..|..++..+.+.|+.++|..+|+++.+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 34689999999999999986433 67889999999999999999999999998864
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=5e-16 Score=123.69 Aligned_cols=198 Identities=15% Similarity=0.017 Sum_probs=128.3
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042154 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARL 240 (377)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (377)
++...+..+...+.+.|++++|...|++..+... .+...+..+..++.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4455566666666667777777777766665532 255666666666667777777777777666554 23455666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCCHHHHHHH
Q 042154 241 DGLAIE-----------KQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMNKAIFKLL 306 (377)
Q Consensus 241 ~~~~~~-----------~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l 306 (377)
..+... |++++|+..+++..+.. +-+...+..+..++...|++++|+..++ ... .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 88888888888887752 2246677788888888888888888888 333 677778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 307 VPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 307 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
..+|...|++++|+..|+++++..+. +...+..+..++.+.|++++|.+.+++...+
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 214 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHHH 214 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 88888888888888888888886543 6677788888888888888888888876543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.8e-16 Score=126.69 Aligned_cols=224 Identities=12% Similarity=0.064 Sum_probs=108.1
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc------cchh
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISK------EGFT 95 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 95 (377)
..+..+...+...|++++|+..|+.+.+.. .+...+..+...+...|++++|++.++++....+... ...+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 345555556666666666666666655443 3445555666666666666666666665554322111 2333
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (377)
..+...+...|++++|...|++..+.. |+. ..+.+.|++++|...++++... .+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 345555555555555555555554432 221 2233344455555555544321 11122344444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (377)
.|++++|...++++.+... .+..++..+..++...|++++|...|++..+.. +.+...|..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555555555555544322 134444445555555555555555555544432 22344444444555555555555555
Q ss_pred HHHHHh
Q 042154 256 VGEMRS 261 (377)
Q Consensus 256 ~~~~~~ 261 (377)
+++..+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=4.9e-16 Score=128.52 Aligned_cols=245 Identities=11% Similarity=0.000 Sum_probs=182.7
Q ss_pred HccCCHHHHHHHHHhcCCCCC---CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCH
Q 042154 103 GKAAMFENARKVFDEMPGRNC---EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSL 179 (377)
Q Consensus 103 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (377)
...|++++|+..|+++.+... +.+..++..+...+...|++++|...|++.... .+.+..+|..+...+...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCH
Confidence 345788888888888877531 124667888888899999999999999888764 233567888888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042154 180 DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEM 259 (377)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (377)
++|.+.++++.+... .+...+..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999887643 367788889999999999999999999988754 44444444555566779999999999887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 042154 260 RSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMN-----KAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333 (377)
Q Consensus 260 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 333 (377)
.... +++...+ .++..+...++.++|...++ .....|+ ...+..+..+|...|++++|...|+++.+.. |
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7652 3343344 46777778888899998888 3333332 4678889999999999999999999998853 3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHH
Q 042154 334 DQAPLQLVVDRLAKELRVEEAKELV 358 (377)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~A~~~~ 358 (377)
+. +.....++...|++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 333466788889999988776
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=1.3e-14 Score=119.87 Aligned_cols=216 Identities=13% Similarity=0.006 Sum_probs=111.2
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh----CCChhHHHHHHHhchhhcCCCcCHHHHHHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN----SKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (377)
.+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+. + +...+..+...
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 35555555555555555555555532 34445555555555 55555555555555433 2 44455555555
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042154 173 FVD----KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS----NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLA 244 (377)
Q Consensus 173 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (377)
+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 555 555555555555555542 44455555555555 555555555555555543 3344444555555
Q ss_pred h----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHh---
Q 042154 245 I----EKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN----EGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCE--- 312 (377)
Q Consensus 245 ~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~--- 312 (377)
. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.++ ..... +...+..+..+|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCC
Confidence 4 555555555555555432 33444445555555 555555555555 11111 13444444555555
Q ss_pred -cCChHHHHHHHHHHHhc
Q 042154 313 -KGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 313 -~g~~~~a~~~~~~~~~~ 329 (377)
.+++++|.+.|++..+.
T Consensus 234 ~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSCCSTTHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHc
Confidence 55555555555555544
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=8.4e-14 Score=132.85 Aligned_cols=299 Identities=14% Similarity=0.128 Sum_probs=171.9
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCC-CccchhhHHHHHHH---------------------------HHhc
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGR-FRTNTGIYTGTVQR---------------------------LANA 70 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~---------------------------~~~~ 70 (377)
-+|.-....+++|...|.+.+|+++++++.-.+. +..+...-+.++.. +...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISN 1062 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhC
Confidence 4566677788999999999999999999984331 11222333334433 3344
Q ss_pred CChHHHHHHHHHhhhhcCCCccchhHHHHHH-HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHH
Q 042154 71 KRFRWIEEILEHQKQYKDISKEGFTARLIAL-YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGL 149 (377)
Q Consensus 71 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (377)
|.+++|..+|++... +...+.. +-..+++++|.++.++.. +..+|..+..++.+.|++++|++.
T Consensus 1063 glyEEAf~IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCHHHHHHHHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 445555555544311 0011111 114445555555555431 245556666666666666666666
Q ss_pred HHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 042154 150 FKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV 229 (377)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 229 (377)
|.+. -|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|.+.++++..... .+
T Consensus 1128 YiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1128 YIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 6443 244555666666666666666666666555543 2222233466666666665542222 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042154 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPF 309 (377)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~ 309 (377)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFA 1259 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHH
Confidence 234455555666666666666666666663 25666666666666666666666633 234555555556
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 042154 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNS 365 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 365 (377)
|...|++..|...... +..++..+..++..|.+.|.+++|..+++......
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 6666666665554332 23356667788888888888888888888876543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=2e-15 Score=124.63 Aligned_cols=236 Identities=10% Similarity=0.005 Sum_probs=166.8
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc--chhHHH
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE--GFTARL 98 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 98 (377)
+..+......+...|++++|+..|+.+.+.. |.+...+..+...+...|++++|++.++++...+..+.. ..+..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 4456667778888889999999988887765 456667888888888888888888888888774311111 124568
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
...+...|++++|...|++..+.. +.+..++..+...|...|++++|+..|++..+. .+.+...+..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHH
Confidence 888888888888888888877654 345677888888888888888888888887643 22344566666634555568
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCC
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR---FADAEKIWETMVNMN-VRPN------VRSYNARLDGLAIEKQ 248 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~ 248 (377)
+++|.+.|+++.+... .+...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 8888888888877632 246666667777777776 777777777766431 1122 2456667777777888
Q ss_pred HHHHHHHHHHHHhC
Q 042154 249 TKKALELVGEMRSK 262 (377)
Q Consensus 249 ~~~a~~~~~~~~~~ 262 (377)
+++|...|++..+.
T Consensus 237 ~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 237 KVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888887764
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=1.5e-16 Score=131.68 Aligned_cols=250 Identities=8% Similarity=-0.086 Sum_probs=162.5
Q ss_pred HhhhcccHHHHHHHHHhcccCCCC--ccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCC
Q 042154 30 GIYKENNLKRLVDKFKKSSDLGRF--RTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAM 107 (377)
Q Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (377)
.+...|++++|+..|+.+.+.... +.+..++..+...+...|++++|.+.++++....+. +...+..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccC
Confidence 344568889999999888765311 225667888888888888888888888888776433 34445567888888888
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042154 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLY 187 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (377)
+++|...|++..+.. +.+..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+.
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888888877654 335677777888888888888888888877654 3444444444455566678888888887
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042154 188 EMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR---PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264 (377)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 264 (377)
+..... +++...+ .++..+...++.++|...+++....... .+...+..+...|...|++++|...|++..+.
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 244 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-- 244 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 666542 2233333 3666666677777777777776654211 01355666677777777777777777777664
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 265 NPDVFTFYALIKGFVNEGNLEEAKRW 290 (377)
Q Consensus 265 ~p~~~~~~~l~~~~~~~~~~~~a~~~ 290 (377)
.|+. +.....++...|++++|.+.
T Consensus 245 ~p~~--~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 245 NVHN--FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp CCTT--CHHHHHHHHHHHHHHHC---
T ss_pred Cchh--HHHHHHHHHHHHHHHhhHHH
Confidence 2321 11223344555666665544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=1e-14 Score=118.98 Aligned_cols=199 Identities=11% Similarity=-0.016 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 042154 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLL 206 (377)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (377)
...+..+...+...|++++|...|+++... .+.+..++..+...+...|++++|.+.++++.+... .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHH
Confidence 556677777777777777777777777653 133455677777777777777777777777776532 25666777777
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042154 207 GFYSNGRFADAEKIWETMVNMNVRP-NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLE 285 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 285 (377)
.|...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777776622223 34556666677777777777777777776642 224566666777777777777
Q ss_pred HHHHHHH-hcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 286 EAKRWYN-KSG-CGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 286 ~a~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
+|..+++ ... .+.+...+..+...+...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777 222 2334556666666777777777777777777664
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=8.7e-15 Score=120.80 Aligned_cols=239 Identities=13% Similarity=0.068 Sum_probs=144.0
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC--HHHHHHHHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD--LVSYNTIIKAFV 174 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 174 (377)
.....+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++.... ...|+ ..+|..+...+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHH
Confidence 46666777777777777777776654 234446666777777777777777777776653 21222 223666677777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
..|++++|.+.++++.+.... +..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777665322 45666777777777777777777777766653 3345555555523334457777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHH----hcCCCCC------HHHHHHHHHHHHhcCChHHHHH
Q 042154 255 LVGEMRSKEINPDVFTFYALIKGFVNEGN---LEEAKRWYN----KSGCGMN------KAIFKLLVPFVCEKGDLDFAFN 321 (377)
Q Consensus 255 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~----~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~ 321 (377)
.|+++.+.. +.+...+..+..++...|+ +++|...++ .....|+ ...|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777776642 2235555566666666665 555665555 1111122 1355566666677777777777
Q ss_pred HHHHHHhcCCCCChhhHHHH
Q 042154 322 LCKRTFSERCLVDQAPLQLV 341 (377)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l 341 (377)
.|+++.+..+. ++.....+
T Consensus 243 ~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 243 AWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHhcCcc-HHHHHHHh
Confidence 77777665322 44444433
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=4e-15 Score=121.42 Aligned_cols=201 Identities=8% Similarity=0.031 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH
Q 042154 57 TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA 136 (377)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (377)
...+..+...+...|++++|.+.++++....+. +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 445566666666667777777777666655322 23344456666667777777777776665543 2355666666777
Q ss_pred HHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHH
Q 042154 137 CVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA 215 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (377)
+...|++++|...++++... +..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHH
Confidence 77777777777777766541 2334 344666666777777777777777777766532 24666677777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777776654 345566666777777777777777777777664
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=8.9e-14 Score=114.90 Aligned_cols=225 Identities=10% Similarity=-0.029 Sum_probs=146.2
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHhH
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD----KGSLDSANTLLYEMEKKGIRLDLITF 201 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 201 (377)
++.++..+...+...|++++|+..|++..+ ..+..++..+...+.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 455666666667777777777777776654 2234556666666666 777777777777776654 55666
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042154 202 NTLLLGFYS----NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI----EKQTKKALELVGEMRSKEINPDVFTFYA 273 (377)
Q Consensus 202 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~ 273 (377)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666766 777777777777776654 55666666666666 677777777777776654 4455566
Q ss_pred HHHHHHh----cCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042154 274 LIKGFVN----EGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCE----KGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR 344 (377)
Q Consensus 274 l~~~~~~----~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (377)
+...|.. .+++++|...++ ... ..+...+..+...|.. .+++++|++.|++..+.+ +...+..+..+
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACD-LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 6666666 677777777777 111 1244556666666666 777777777777776653 24556666666
Q ss_pred HHh----cCCHHHHHHHHHhhccCCce
Q 042154 345 LAK----ELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 345 ~~~----~g~~~~A~~~~~~~~~~~~~ 367 (377)
|.+ .|++++|.+.++++.+.++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 766 67777777777776665543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=3e-14 Score=113.87 Aligned_cols=199 Identities=10% Similarity=-0.017 Sum_probs=116.7
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL 205 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (377)
+...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.++++.+... .+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 4555666666667777777777777666543 122345666666666666777777777666665432 2455666666
Q ss_pred HHHHcC-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 206 LGFYSN-GRFADAEKIWETMVNMNVRP-NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 206 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
..+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 666666 66666666666666522122 24455566666666666666666666665542 2235555666666666666
Q ss_pred HHHHHHHHH-h-cCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 284 LEEAKRWYN-K-SGCG-MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 284 ~~~a~~~~~-~-~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
+++|..+++ . ...+ .+...+..+...+...|+.+.|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666 1 1112 3444555555555666666666666666554
No 48
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=3.9e-13 Score=128.37 Aligned_cols=301 Identities=11% Similarity=0.119 Sum_probs=206.6
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
-++.+|..+..++.+.|++++|++.|.+. .+...|..++..+.+.|++++|++.+....+.. ++....+.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 34677888888888888888888888654 255567778888888888888888887766654 222223347
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
+.+|++.+++++..... + .++...|..+...|...|++++|..+|... ..|..+..++.+.|+
T Consensus 1174 afaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCC
Confidence 77888888777544332 1 245566667778888888888888888764 257788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
+++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++.
T Consensus 1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888766 255777777788888888877777655422 3455667888889999999999999987
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHH-hcCCCC------CHHHHHHHHHHHHhcCChHHHHHH-------
Q 042154 259 MRSKEINPDVFTFYALIKGFVN--EGNLEEAKRWYN-KSGCGM------NKAIFKLLVPFVCEKGDLDFAFNL------- 322 (377)
Q Consensus 259 ~~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~-~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~------- 322 (377)
.+... +-....|..+...+++ -+++.++.++|. ...++| +...|.-++-.|.+.|+++.|...
T Consensus 1306 aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1306 ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred HhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 77543 2234456556666655 345666666666 444433 456788888889999999988732
Q ss_pred ------HHHHHhcCCCCChhhHHHHHHHHHhcC---------------CHHHHHHHHH
Q 042154 323 ------CKRTFSERCLVDQAPLQLVVDRLAKEL---------------RVEEAKELVE 359 (377)
Q Consensus 323 ------~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 359 (377)
|++.+. ...++..|...+.-|...+ +.+++.+++.
T Consensus 1385 a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1385 AWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 222221 2336667776776666655 6666666665
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=1e-14 Score=116.62 Aligned_cols=202 Identities=7% Similarity=-0.055 Sum_probs=106.3
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLI 99 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (377)
++..+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|.+.++++....+. +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 35556666666666666666666666665543 344555666666666666666666666666554322 222333455
Q ss_pred HHHHcc-CCHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcC
Q 042154 100 ALYGKA-AMFENARKVFDEMPGRNC-EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG 177 (377)
Q Consensus 100 ~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (377)
..+... |++++|...++++.+.+. +.+...+..+...+...|++++|+..++++.+. .+.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcC
Confidence 555555 666666666655554111 112344555555555555555555555555432 1122344555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555554432212344444444445555555555555555443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=5.9e-15 Score=119.58 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 042154 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLL 206 (377)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (377)
...|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.++++.+... .+...+..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp -------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 444555556666666666666666666532 223445666666666666677777666666665432 25566666666
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042154 207 GFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEE 286 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 286 (377)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 6777777777777777666543 2355566666667777777777777777766542 2345666667777777777777
Q ss_pred HHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 287 AKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 287 a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
|...++ ....+.+..++..+..++...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777 11123345667777777777788888888887777754
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.5e-13 Score=122.77 Aligned_cols=308 Identities=9% Similarity=-0.051 Sum_probs=215.4
Q ss_pred CccchhhHHHHHHHHHhcCChHHHHHHHHHhhhh-----c---CCCccchhHHHHHHHHccCCHHHHHHHHHhcCCC---
Q 042154 53 FRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY-----K---DISKEGFTARLIALYGKAAMFENARKVFDEMPGR--- 121 (377)
Q Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 121 (377)
.+.....|+.+...+...|++++|++.+++..+. + .+.....+..+..+|...|++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445678999999999999999999999987543 1 1122345667999999999999999998876431
Q ss_pred ----CCCccHHHHHHHHHHHHh--CCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHH---HHHcCCHHHHHHHHHHHHH
Q 042154 122 ----NCEQTVLSFNALLGACVN--SKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKA---FVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 122 ----~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~ 191 (377)
.......++..+..++.. .+++++|+..|++..+. .|+ +..+..+..+ +...++.++|++.+++..+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 111235566666555554 45799999999998764 444 3444444444 4456788899999999887
Q ss_pred CCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042154 192 KGIRLDLITFNTLLLGFYS----NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD 267 (377)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 267 (377)
... .+...+..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +-+
T Consensus 204 l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 204 LNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp HCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred cCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 643 356666666555544 467889999999988765 4567888999999999999999999999998852 334
Q ss_pred HHHHHHHHHHHHhc-------------------CCHHHHHHHHH-hcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042154 268 VFTFYALIKGFVNE-------------------GNLEEAKRWYN-KSGCG-MNKAIFKLLVPFVCEKGDLDFAFNLCKRT 326 (377)
Q Consensus 268 ~~~~~~l~~~~~~~-------------------~~~~~a~~~~~-~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 326 (377)
..++..+..+|... +..++|...++ ..... .+...+..+...+...|++++|++.|+++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 56677666665432 23566777776 22223 34557888899999999999999999999
Q ss_pred HhcCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHhhccCCc
Q 042154 327 FSERCLVDQA--PLQLVVD-RLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 327 ~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
++....+... .+..+.. .+...|++++|.+.++++.+..+
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 9865443221 2333333 34578999999999999876554
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=1.7e-15 Score=122.80 Aligned_cols=201 Identities=10% Similarity=0.058 Sum_probs=115.0
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLI 99 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (377)
.+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++++....+. +...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 45567777777888888888888888887654 556677777777788888888888888777665432 333444566
Q ss_pred HHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCH
Q 042154 100 ALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSL 179 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (377)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 66777777777777777665543 334556666666666667777777666666543 122444566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 180 DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
++|...++++.+... .+..++..+..+|...|++++|...++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666655422 24555666666666666666666666666554
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=6.6e-15 Score=126.74 Aligned_cols=229 Identities=10% Similarity=-0.004 Sum_probs=119.4
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCC-hHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKR-FRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
..|..+...+.+.|++++|+..|+++.+.. |.+..+|..+..++...|+ +++|+..++++....+.. ...+..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
Confidence 345555555555666666666666665543 4445555566666666664 666666666655554332 223334555
Q ss_pred HHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH-cCCH
Q 042154 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD-KGSL 179 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~ 179 (377)
++...|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++++. -+-+...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 5555666666666666655543 234555555555566666666666666655543 11234455555555555 3333
Q ss_pred HHH-----HHHHHHHHHCCCCCCHHhHHHHHHHHHcCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----
Q 042154 180 DSA-----NTLLYEMEKKGIRLDLITFNTLLLGFYSNG--RFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK----- 247 (377)
Q Consensus 180 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 247 (377)
++| +..++++...... +...|..+..++...| ++++|++.+.++ +.. +.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 444 3555555544222 4445555555555555 355555555554 221 234445555555555442
Q ss_pred ----CHHHHHHHHHHH
Q 042154 248 ----QTKKALELVGEM 259 (377)
Q Consensus 248 ----~~~~a~~~~~~~ 259 (377)
..++|+.+|+++
T Consensus 329 ~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 329 NKEDILNKALELCEIL 344 (382)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 135555555555
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=2.5e-15 Score=131.44 Aligned_cols=299 Identities=13% Similarity=0.012 Sum_probs=155.3
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccc----hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTN----TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
....+......+...|++++|+..|+.+.+.. +.+ ..++..+...+...|++++|...++++......
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------ 79 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------ 79 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh------
Confidence 33445555556666666666666666665543 222 234555555556666666666665554332100
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC----HHHHHHHH
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGRNC-EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD----LVSYNTII 170 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 170 (377)
.+- +....++..+...+...|++++|...+++......-.++ ..++..+.
T Consensus 80 -------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 80 -------------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -------------------------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 000 011223444444444455555554444443321000001 22444555
Q ss_pred HHHHHcCC--------------------HHHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042154 171 KAFVDKGS--------------------LDSANTLLYEMEKK----GI-RLDLITFNTLLLGFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 171 ~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (377)
..+...|+ +++|.+.+.+..+. +. .....++..+...|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555 55555555554321 11 1112345566666666677777766666655
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH---
Q 042154 226 NMNV-RPN----VRSYNARLDGLAIEKQTKKALELVGEMRSK----EINPD-VFTFYALIKGFVNEGNLEEAKRWYN--- 292 (377)
Q Consensus 226 ~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~--- 292 (377)
+... .++ ..++..+...|...|++++|...+++..+. +..+. ..++..+...|...|++++|...++
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 011 235666666677777777777777666542 11111 3456667777777777777777777
Q ss_pred ----hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--C---CCChhhHHHHHHHHHhcCCH
Q 042154 293 ----KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER--C---LVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 293 ----~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~g~~ 351 (377)
..+..+ ...++..+..+|...|++++|.+.+++..+.. . .....++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 111111 13456677777888888888888887766541 1 11133556666677766654
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=133.37 Aligned_cols=265 Identities=11% Similarity=0.041 Sum_probs=158.9
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccC----CCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc-----
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDL----GRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISK----- 91 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 91 (377)
...+..+...+...|++++|+..|+++.+. +..+....++..+...+...|++++|...+++.........
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 357888999999999999999999987542 21122355777888888888999999988888766532111
Q ss_pred cchhHHHHHHHHccCC--------------------HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHH
Q 042154 92 EGFTARLIALYGKAAM--------------------FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFK 151 (377)
Q Consensus 92 ~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (377)
...+..+...|...|+ +++|...+++..+ ++.
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~----------------------------~~~ 178 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS----------------------------LVT 178 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH----------------------------HHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHH
Confidence 1133345555555555 4444443333211 111
Q ss_pred hchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042154 152 DLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI-RLD----LITFNTLLLGFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 152 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (377)
.. +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..
T Consensus 179 ~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 179 AL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HT----TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11 1111 123566666667777777777777766653210 011 2356667777777777777777777665
Q ss_pred hC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH---
Q 042154 226 NM----NVRP-NVRSYNARLDGLAIEKQTKKALELVGEMRSK----EINP-DVFTFYALIKGFVNEGNLEEAKRWYN--- 292 (377)
Q Consensus 226 ~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~--- 292 (377)
+. +..+ ...++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1000 1345666777777788888888777776543 1111 14466677777888888888888777
Q ss_pred ----hcCCCC-CHHHHHHHHHHHHhcCChH
Q 042154 293 ----KSGCGM-NKAIFKLLVPFVCEKGDLD 317 (377)
Q Consensus 293 ----~~~~~~-~~~~~~~l~~~~~~~g~~~ 317 (377)
..+..+ ...++..+...+...|+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 335 EISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 222112 2335556666666666553
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=6.7e-14 Score=124.07 Aligned_cols=319 Identities=10% Similarity=0.036 Sum_probs=191.5
Q ss_pred HHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCCh---HHHHHHHHHhhhhcCCCccchhHHHHHHHH
Q 042154 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF---RWIEEILEHQKQYKDISKEGFTARLIALYG 103 (377)
Q Consensus 27 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (377)
+...+.+.|++++|++.|++..+.+ +...+..+...+...|+. ++|.++|++.... .....+ .+...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~-~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQA-RLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC-------------------------------CHH-HHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHH-HHHHHHH
Confidence 3445555666666666666665443 222333444444445555 5666666655543 112222 2444333
Q ss_pred ccC-----CHHHHHHHHHhcCCCCCCc--------------------------------cHHHHHHHHHHHHhCCChhHH
Q 042154 104 KAA-----MFENARKVFDEMPGRNCEQ--------------------------------TVLSFNALLGACVNSKKFDEV 146 (377)
Q Consensus 104 ~~~-----~~~~A~~~~~~~~~~~~~~--------------------------------~~~~~~~l~~~~~~~~~~~~a 146 (377)
..+ +.++|...|++..+.|.+. ++..+..+...|...+.++++
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 333 5556666666555444111 122333333444444433333
Q ss_pred HHHHHhchhhcCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC----CCHHHHHH
Q 042154 147 DGLFKDLPHKLGIEPDLVSYNTIIKAFVDKG---SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN----GRFADAEK 219 (377)
Q Consensus 147 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~ 219 (377)
......+.+. ....++..+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++|..
T Consensus 161 ~~~a~~~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 161 LDDVERICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 3322222111 11223347788888888889 899999999999988753 666556677777654 68999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHH
Q 042154 220 IWETMVNMNVRPNVRSYNARLDG-L--AIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG-----NLEEAKRWY 291 (377)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~ 291 (377)
.|++.. .| +...+..+... + ...+++++|+.+|++..+.| +...+..|...|. .| ++++|.++|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 999987 43 44566666666 3 46889999999999998876 6667777777776 55 999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhcc
Q 042154 292 NKSGCGMNKAIFKLLVPFVCE----KGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK----ELRVEEAKELVELGKT 363 (377)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 363 (377)
+..- .-+...+..|...|.. ..++++|...|++..+.| ++.....|...|.. ..+.++|..+++.+.+
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 9443 6677788888877776 448999999999998865 34566677777764 4589999999999988
Q ss_pred CCce
Q 042154 364 NSYC 367 (377)
Q Consensus 364 ~~~~ 367 (377)
.|.+
T Consensus 387 ~g~~ 390 (452)
T 3e4b_A 387 QDTP 390 (452)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 8754
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1.2e-14 Score=128.81 Aligned_cols=284 Identities=11% Similarity=0.040 Sum_probs=171.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCH---HHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042154 62 GTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMF---ENARKVFDEMPGRNCEQTVLSFNALLGACV 138 (377)
Q Consensus 62 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (377)
.+...+.+.|++++|.++|++..+.+. ....+ .+...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~--~~A~~-~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY--SEAQV-GLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--CTGGG-TCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC--HHHHH-HHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 466777889999999999999887653 22333 467777778888 8999999998864 4556666666555
Q ss_pred hCC-----ChhHHHHHHHhchhhcCCCc--------------------------------CHHHHHHHHHHHHHcCCH--
Q 042154 139 NSK-----KFDEVDGLFKDLPHKLGIEP--------------------------------DLVSYNTIIKAFVDKGSL-- 179 (377)
Q Consensus 139 ~~~-----~~~~a~~~~~~~~~~~~~~p--------------------------------~~~~~~~l~~~~~~~~~~-- 179 (377)
..+ ++++|+.+|++..+. |... +...+..+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 554 678999999887653 3211 111222222333333322
Q ss_pred --HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHH
Q 042154 180 --DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG---RFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE----KQTK 250 (377)
Q Consensus 180 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 250 (377)
+.+..++..... .+...+..+...|...| +.++|++.|++..+.| .++...+..+...|... ++++
T Consensus 160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 223333333322 23336777888888888 8889999999988887 35555556677777554 6889
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----ChHHHHHH
Q 042154 251 KALELVGEMRSKEINPDVFTFYALIKG-F--VNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKG-----DLDFAFNL 322 (377)
Q Consensus 251 ~a~~~~~~~~~~g~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~ 322 (377)
+|+.+|++.. .| +...+..|... + ...+++++|.+++++.--.-+...+..|...|. .| ++++|.+.
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9999999887 33 44555556655 3 458899999999991111226667777777776 55 89999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhhccCCce
Q 042154 323 CKRTFSERCLVDQAPLQLVVDRLAK----ELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 367 (377)
|++.. . -++..+..|...|.. ..++++|.++++++.+.|.+
T Consensus 310 ~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 310 FEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp HHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred HHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 98877 2 366677777777776 33889999999998887653
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=4.8e-14 Score=121.41 Aligned_cols=232 Identities=10% Similarity=0.046 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHhHHHH
Q 042154 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGS-LDSANTLLYEMEKKGIRLDLITFNTL 204 (377)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (377)
..+|..+...+.+.|++++|+..|++.+.. .| +..+|+.+..++...|+ +++|+..|+++.+.... +...|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 456777777788888888888888887754 34 45577777888888885 88888888888876443 67778888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCC
Q 042154 205 LLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN-EGN 283 (377)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~~~ 283 (377)
..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 888888888888888888888765 3466778888888888888888888888888753 2356777778777777 555
Q ss_pred HHHH-----HHHHH-hcCCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----
Q 042154 284 LEEA-----KRWYN-KSGCGM-NKAIFKLLVPFVCEKG--DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKEL----- 349 (377)
Q Consensus 284 ~~~a-----~~~~~-~~~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 349 (377)
.++| +..++ .....| +...|..+..++...| ++++|++.+.++ +.. ..+...+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 4666 35566 333334 5667887887788777 578888888877 332 335667778888888764
Q ss_pred ---C-HHHHHHHHHhh-ccCCc
Q 042154 350 ---R-VEEAKELVELG-KTNSY 366 (377)
Q Consensus 350 ---~-~~~A~~~~~~~-~~~~~ 366 (377)
+ .++|.++++++ .+.++
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCG
T ss_pred chHHHHHHHHHHHHHHHHHhCc
Confidence 2 57888888888 55544
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=4.8e-15 Score=130.08 Aligned_cols=273 Identities=15% Similarity=0.027 Sum_probs=180.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc---chhHHHHHHHHccCCHHHHHHHHHhcCCC----C-CCccHH
Q 042154 57 TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE---GFTARLIALYGKAAMFENARKVFDEMPGR----N-CEQTVL 128 (377)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~ 128 (377)
...+..+...+...|++++|++.++++.+..+.... ..+..+...|...|++++|...|++..+. + .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344555666777778888888888777766433221 24456777777778888887777765432 1 122355
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhc---CCCc-CHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKL---GIEP-DLVSYNTIIKAFVDKGS-----------------LDSANTLLY 187 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 187 (377)
++..+...|...|++++|...+++..... +-.| ...++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67777778888888888888887765421 1112 23467777788888888 888888877
Q ss_pred HHHHC----CC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 188 EMEKK----GI-RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR-PN----VRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 188 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
+..+. +. .....++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11 112346777788888888888888888877643100 11 2367777788888888888888888
Q ss_pred HHHhCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHH-------hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 042154 258 EMRSKEI----N-PDVFTFYALIKGFVNEGNLEEAKRWYN-------KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCK 324 (377)
Q Consensus 258 ~~~~~g~----~-p~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 324 (377)
+..+... . ....++..+...+...|++++|..+++ ..+..+ ...++..+..+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7765310 0 114566777788888888888888887 111111 13466677778888888888888888
Q ss_pred HHHhc
Q 042154 325 RTFSE 329 (377)
Q Consensus 325 ~~~~~ 329 (377)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=6e-15 Score=129.46 Aligned_cols=267 Identities=11% Similarity=-0.018 Sum_probs=204.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccH----HHHHHHHHHHHhCCChhHHHHHHHhchhhc---CCCc-CHHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTV----LSFNALLGACVNSKKFDEVDGLFKDLPHKL---GIEP-DLVSYNT 168 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~ 168 (377)
.+...+...|++++|...|++..+.+ +.+. ..+..+...|...|++++|+..+++..+.. +..| ...++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 57778899999999999999988764 2232 478888999999999999999998875431 1122 3457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHhHHHHHHHHHcCCC-----------------HHHHHHHHHHHHh
Q 042154 169 IIKAFVDKGSLDSANTLLYEMEKK----G-IRLDLITFNTLLLGFYSNGR-----------------FADAEKIWETMVN 226 (377)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~ 226 (377)
+...+...|++++|...++++.+. + ......++..+...|...|+ +++|...+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 899999999999999999987753 1 12235578888899999999 9999999987754
Q ss_pred C----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH----
Q 042154 227 M----NV-RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI-NPD----VFTFYALIKGFVNEGNLEEAKRWYN---- 292 (377)
Q Consensus 227 ~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~---- 292 (377)
. +. ......+..+...|...|++++|...+++..+... .++ ...+..+...|...|++++|.+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11 11234778888999999999999999999876411 012 2377888999999999999999998
Q ss_pred ---hcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 293 ---KSGCG-MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCL-----VDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 293 ---~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
..+.. ....++..+...+...|++++|.+.+++.++.... ....++..+..+|.+.|++++|.+.++++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111 12457788899999999999999999998765211 1134778899999999999999999998765
Q ss_pred C
Q 042154 364 N 364 (377)
Q Consensus 364 ~ 364 (377)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=1.7e-14 Score=122.66 Aligned_cols=62 Identities=8% Similarity=-0.098 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERC-----LVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
++..+...+...|++++|...++++.+... .....++..+...|.+.|++++|.+.++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444455555555555555555443210 00122444555555555555555555555543
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=5e-14 Score=122.46 Aligned_cols=297 Identities=9% Similarity=-0.047 Sum_probs=158.9
Q ss_pred hhcccHHHHHHHHHhcccCC-CC--ccchhhHHHHHHHH--HhcCChHHHH-----------HHHHHhhhhcCCCcc---
Q 042154 32 YKENNLKRLVDKFKKSSDLG-RF--RTNTGIYTGTVQRL--ANAKRFRWIE-----------EILEHQKQYKDISKE--- 92 (377)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~--- 92 (377)
.+.+++++|..+++.+.+.- .. .++...|-.++..- .-.++++.+. +.++.+.......+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 45888999999988875421 12 12223333333221 1123333333 455544332111110
Q ss_pred -chhHHHHHHHHccCCHHHHHHHHHhcCCC----CCCc-cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC----
Q 042154 93 -GFTARLIALYGKAAMFENARKVFDEMPGR----NCEQ-TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD---- 162 (377)
Q Consensus 93 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---- 162 (377)
.++-.....+...|++++|...|++..+. +-++ ...++..+...|...|++++|+..+++..+...-.++
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 01112555667778888888887776553 1111 2456677777777777777777777766542111111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCC
Q 042154 163 -LVSYNTIIKAFVDKGSLDSANTLLYEMEKK----GI-RLDLITFNTLLLGFYSNGRFADAEKIWETMVN-----MNVRP 231 (377)
Q Consensus 163 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 231 (377)
..+++.+...|...|++++|...+++..+. +. .....++..+..+|...|++++|...+++..+ ...+.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 235666667777777777777777766532 10 01123566666677777777777777766654 22122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCCH-HHH
Q 042154 232 NVRSYNARLDGLAIEKQTKKALELVGEMRSK----EINPDVFTFYALIKGFVNEGN---LEEAKRWYNKSGCGMNK-AIF 303 (377)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~ 303 (377)
...++..+...|...|++++|...+++..+. +-+.....+..+...+...|+ .++|..+++..+..|+. ..+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 342 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3455666666666777777777666665542 111111223445555555555 55555555533322222 244
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 304 KLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 304 ~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
..+...|...|++++|.+.+++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555566666666666666655544
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=4.4e-14 Score=122.76 Aligned_cols=293 Identities=11% Similarity=0.009 Sum_probs=203.6
Q ss_pred HHHhcCChHHHHHHHHHhhhhcCC--Cccc--hhHHHHH--HHHccCCHHHHH-----------HHHHhcCCCCCCccHH
Q 042154 66 RLANAKRFRWIEEILEHQKQYKDI--SKEG--FTARLIA--LYGKAAMFENAR-----------KVFDEMPGRNCEQTVL 128 (377)
Q Consensus 66 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~--~~~~l~~--~~~~~~~~~~A~-----------~~~~~~~~~~~~~~~~ 128 (377)
.+.+.+++++|..+++++.+.-.. .+.. .|-.++. ...-.++++.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 345689999999999998765322 2222 1112221 112223333343 5555553321 1222
Q ss_pred H------HHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C--
Q 042154 129 S------FNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD----LVSYNTIIKAFVDKGSLDSANTLLYEMEKKG--I-- 194 (377)
Q Consensus 129 ~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-- 194 (377)
. +......+...|++++|+..|++........++ ..++..+...+...|+++.|...+.+..+.- .
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 2 222556688899999999999988653211222 3578889999999999999999999887531 1
Q ss_pred --CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 042154 195 --RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV-RPN----VRSYNARLDGLAIEKQTKKALELVGEMRSK----E 263 (377)
Q Consensus 195 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g 263 (377)
.....++..+...|...|++++|...|++..+... .++ ..++..+...|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 11245788889999999999999999998874310 011 247888999999999999999999998772 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-------hcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCC
Q 042154 264 I-NPDVFTFYALIKGFVNEGNLEEAKRWYN-------KSGCGMNKAIFKLLVPFVCEKGD---LDFAFNLCKRTFSERCL 332 (377)
Q Consensus 264 ~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~ 332 (377)
. +....++..+...+...|++++|...++ ..+.+.....+..+...+...|+ +++|+.++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 3 3345678899999999999999999998 22222222345678888999999 77777777765 222
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 333 V-DQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 333 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
| ....+..+...|...|++++|.+.++++.+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 234677899999999999999999998765
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=8.2e-13 Score=111.11 Aligned_cols=218 Identities=9% Similarity=-0.036 Sum_probs=125.8
Q ss_pred HHHHHHHHhcccCCCCccchhhHHHHHHHHHh-------cCCh-------HHHHHHHHHhhhhcCCCccchhHHHHHHHH
Q 042154 38 KRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN-------AKRF-------RWIEEILEHQKQYKDISKEGFTARLIALYG 103 (377)
Q Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (377)
++|+..|+++.... |.++..|..++..+.. .|++ ++|..+|++....-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56777777776653 5566667666666543 3554 667777766665212223334445666666
Q ss_pred ccCCHHHHHHHHHhcCCCCCCcc-HH-HHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHH-HcCCHH
Q 042154 104 KAAMFENARKVFDEMPGRNCEQT-VL-SFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV-DKGSLD 180 (377)
Q Consensus 104 ~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~ 180 (377)
+.|++++|..+|++..+.. |+ .. +|..++..+.+.|++++|..+|++..+. .+++...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 6677777777777666543 32 22 5666666666666666776666666542 1122333333222211 246666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 181 SANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN-VRP--NVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
+|.++|+.+.+... .+...|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665422 245566666666666666666666666666642 233 34456666666666666666666666
Q ss_pred HHHhC
Q 042154 258 EMRSK 262 (377)
Q Consensus 258 ~~~~~ 262 (377)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=1.2e-14 Score=123.49 Aligned_cols=273 Identities=15% Similarity=0.013 Sum_probs=207.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc---cchhHHHHHHHHccCCHHHHHHHHHhcCCC----CC-CccHH
Q 042154 57 TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISK---EGFTARLIALYGKAAMFENARKVFDEMPGR----NC-EQTVL 128 (377)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~ 128 (377)
...+......+...|++++|+..++++.+..+... ...+..+...+...|++++|...+++..+. +- +....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34566677888899999999999999988753322 245667889999999999999999987543 11 12356
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC----HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD----LVSYNTIIKAFVDKGS--------------------LDSANT 184 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 184 (377)
++..+...+...|++++|...+++......-.++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7888899999999999999999987543211122 3478888899999999 999999
Q ss_pred HHHHHHHC----CC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 185 LLYEMEKK----GI-RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN----V-RPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 185 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
.+++.... +. .....++..+...+...|++++|...+++..+.. . .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887642 11 1124578888889999999999999999887431 0 1112377888899999999999999
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH-------hcCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 042154 255 LVGEMRSK----EINP-DVFTFYALIKGFVNEGNLEEAKRWYN-------KSGCGM-NKAIFKLLVPFVCEKGDLDFAFN 321 (377)
Q Consensus 255 ~~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 321 (377)
.+++.... +..+ ...++..+...+...|++++|...++ ..+..+ ...++..+...|...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99988753 1111 14577888899999999999999998 222111 13467788899999999999999
Q ss_pred HHHHHHhc
Q 042154 322 LCKRTFSE 329 (377)
Q Consensus 322 ~~~~~~~~ 329 (377)
.++++.+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99999875
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=3.4e-13 Score=104.27 Aligned_cols=163 Identities=15% Similarity=0.087 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
+.+|..+...+.+.|++++|++.|++..+..+. +...+..+..+|.+.|++++|...+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344555555555555555555555555544322 44455555555555555555555555554432 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAF 320 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~ 320 (377)
+...++++.|...+.+..... +.+...+..+..++...|++++|++.++ .... +.+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 555555555555555544431 2233444444444444555555544444 1111 123334444444444444455554
Q ss_pred HHHHHHHh
Q 042154 321 NLCKRTFS 328 (377)
Q Consensus 321 ~~~~~~~~ 328 (377)
+.|+++++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444444
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=8.7e-15 Score=123.18 Aligned_cols=242 Identities=11% Similarity=0.092 Sum_probs=157.1
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccC-------CCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhc---
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDL-------GRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK--- 87 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 87 (377)
|.+..++..+...+...|++++|+..|+++.+. . .+....++..+...+...|++++|.+.++++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 334677888999999999999999999998762 2 24456778889999999999999999998877642
Q ss_pred ----CCCccchhHHHHHHHHccCCHHHHHHHHHhcCCC------C-CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 88 ----DISKEGFTARLIALYGKAAMFENARKVFDEMPGR------N-CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 88 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
.+.....+..+...|...|++++|...|++..+. + .+....++..+...+...|++++|+..+++....
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1223345567888889999999999988887653 1 1234556777888888899999998888887543
Q ss_pred c-----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHH-------hHHHHHHHHHcCCCHHH
Q 042154 157 L-----GIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKK-------GIRLDLI-------TFNTLLLGFYSNGRFAD 216 (377)
Q Consensus 157 ~-----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~l~~~~~~~~~~~~ 216 (377)
. +..| ...++..+...+...|++++|...++++.+. ...+... .+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1 1122 2346777888888889999988888887753 1111111 11222222333344455
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
+...+....... +.+..++..+...|.+.|++++|...|++..+
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555554432 23445666777777777777777777777654
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=8.4e-14 Score=124.21 Aligned_cols=210 Identities=13% Similarity=0.057 Sum_probs=129.5
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCCh-hHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHH
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKF-DEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANT 184 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 184 (377)
.++++...+++..... +.+...+..+...+...|++ ++|+..|++..+. .| +..+|..+..+|...|++++|.+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3566666666655543 34566777777777777777 7777777776653 23 35567777777777777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHcC---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------C
Q 042154 185 LLYEMEKKGIRLDLITFNTLLLGFYSN---------GRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE--------K 247 (377)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~ 247 (377)
.|+++.+.. |+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 777777653 4456666677777776 77777777777766654 23456666666666666 6
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 042154 248 QTKKALELVGEMRSKEIN--PDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLC 323 (377)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 323 (377)
++++|+..|++..+.... -+...|..+..+|...|++++|.+.++ .....| +...+..+..++...|++++|++.+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666653110 245556666666666666666666666 222222 3445555555566666665555543
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.58 E-value=4.8e-13 Score=116.00 Aligned_cols=229 Identities=11% Similarity=-0.025 Sum_probs=111.4
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCC--C---CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-----CHHHHH
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRN--C---EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-----DLVSYN 167 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~ 167 (377)
....+...|++++|...|++..+.. . +....++..+...|...|+++.|+..+++......-.+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3444556666777766666654421 0 01233555566666666666666666665543211111 123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 042154 168 TIIKAFVDKGSLDSANTLLYEMEKK----GIR-LDLITFNTLLLGFYSNGRFADAEKIWETMVN-----MNVRPNVRSYN 237 (377)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 237 (377)
.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 5566666666666666666655431 110 1123455555556666666666666655554 22 11234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCCH-HHHHHHHHH
Q 042154 238 ARLDGLAIEKQTKKALELVGEMRSKE----INPDVFTFYALIKGFVNEGN---LEEAKRWYNKSGCGMNK-AIFKLLVPF 309 (377)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~g----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~~~~l~~~ 309 (377)
.+...+.+.|++++|...+++..+.. .+.....+..+...+...++ ..+|..+++..+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 55555555666666666555554421 11112233334444444444 44555555432222221 233444555
Q ss_pred HHhcCChHHHHHHHHHHH
Q 042154 310 VCEKGDLDFAFNLCKRTF 327 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~ 327 (377)
|...|++++|.+.|+++.
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555544
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=3.1e-12 Score=107.54 Aligned_cols=182 Identities=7% Similarity=-0.019 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHH
Q 042154 180 DSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN-VR-SYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
++|..+|++..+.-.+.+...|..++..+.+.|++++|..+|++..+.. |+ .. .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4555555555442011133344445555555555555555555554432 22 11 44444444445555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCC
Q 042154 258 EMRSKEINPDVFTFYALIKGFV-NEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER-CLV 333 (377)
Q Consensus 258 ~~~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 333 (377)
+..+.. +++...|........ ..|+.++|.++|+ .... +.+...|..++..+.+.|++++|..+|++++... ..|
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 554432 112222222222111 1355555555555 1111 1233444445555555555555555555555431 122
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 334 --DQAPLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 334 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
....|..++..+.+.|+.++|..+++++.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2334444455555555555555555554443
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=1.2e-12 Score=113.39 Aligned_cols=228 Identities=10% Similarity=0.036 Sum_probs=171.6
Q ss_pred HHHHHHHhCCChhHHHHHHHhchhhcCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C-CCHHhH
Q 042154 132 ALLGACVNSKKFDEVDGLFKDLPHKLGIEPD----LVSYNTIIKAFVDKGSLDSANTLLYEMEKK----GI-R-LDLITF 201 (377)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~ 201 (377)
.....+...|++++|+..|++........++ ..++..+...+...|+++.|...+.+..+. +. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3445578899999999999987643222232 347888899999999999999999988752 11 1 125578
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 042154 202 NTLLLGFYSNGRFADAEKIWETMVNM----NVR-PNVRSYNARLDGLAIEKQTKKALELVGEMRS-----KEINPDVFTF 271 (377)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~p~~~~~ 271 (377)
+.+...|...|++++|...|++..+. +-. ....++..+...|...|++++|...+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 88999999999999999999987752 211 1235677888999999999999999999887 42 2236788
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-------hcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCC-ChhhHHH
Q 042154 272 YALIKGFVNEGNLEEAKRWYN-------KSGCGMNKAIFKLLVPFVCEKGD---LDFAFNLCKRTFSERCLV-DQAPLQL 340 (377)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~ 340 (377)
..+...+.+.|++++|..+++ ..+.+.....+..+...+...|+ +.+|+..+++. +..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 899999999999999999999 12222233456666777888888 77787777762 2222 2346677
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc
Q 042154 341 VVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 341 l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
+...|.+.|++++|.+.++++.+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=8.3e-14 Score=124.25 Aligned_cols=215 Identities=9% Similarity=-0.064 Sum_probs=157.9
Q ss_pred CChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCH-HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHH
Q 042154 71 KRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMF-ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGL 149 (377)
Q Consensus 71 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (377)
++++++++.++....... .+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..
T Consensus 82 ~~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 346667777776555432 3444555677888888888 88888888877654 33577788888888888888888888
Q ss_pred HHhchhhcCCCcCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC--------C
Q 042154 150 FKDLPHKLGIEPDLVSYNTIIKAFVDK---------GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN--------G 212 (377)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~ 212 (377)
|++..+ ..|+...+..+...+... |++++|++.++++.+... .+...|..+..+|... |
T Consensus 160 ~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccc
Confidence 888764 356667777778888887 888888888888877643 3677778888888777 7
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 213 RFADAEKIWETMVNMNVR--PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRW 290 (377)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 290 (377)
++++|...|++..+.... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888875410 367778888888888888888888888887752 23456677778888888888888876
Q ss_pred HH
Q 042154 291 YN 292 (377)
Q Consensus 291 ~~ 292 (377)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 55
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2.4e-12 Score=99.44 Aligned_cols=167 Identities=11% Similarity=-0.000 Sum_probs=113.2
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042154 197 DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276 (377)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 276 (377)
++.+|..+...|...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45667777777777777777777777777654 2355667777777777777777777777776642 234556666666
Q ss_pred HHHhcCCHHHHHHHHH-hcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042154 277 GFVNEGNLEEAKRWYN-KSG-CGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEA 354 (377)
Q Consensus 277 ~~~~~~~~~~a~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 354 (377)
.+...++++.|...+. ... .+.+...+..+..++.+.|++++|++.|++.++..+. +..++..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 7777777777777777 222 2334566667777777777777777777777765433 566677777777777777777
Q ss_pred HHHHHhhccCCc
Q 042154 355 KELVELGKTNSY 366 (377)
Q Consensus 355 ~~~~~~~~~~~~ 366 (377)
.+.++++.+..+
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 777777766554
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=6.1e-13 Score=111.78 Aligned_cols=240 Identities=12% Similarity=0.062 Sum_probs=169.0
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhc------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----
Q 042154 124 EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL------GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK----- 192 (377)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 192 (377)
+....++..+...+...|++++|..+++++.+.. .......++..+...+...|++++|...++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4456788889999999999999999999986521 11223457888899999999999999999998754
Q ss_pred -C-CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 042154 193 -G-IRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM------NV-RPNVRSYNARLDGLAIEKQTKKALELVGEMRSK- 262 (377)
Q Consensus 193 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 262 (377)
+ .+....++..+...|...|++++|...+++..+. +- +.....+..+...+...|++++|..+++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2234667888999999999999999999988764 21 223456788889999999999999999998764
Q ss_pred -----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH-hc---------CCCCCH-------HHHHHHHHHHHhcCChHHH
Q 042154 263 -----EINPD-VFTFYALIKGFVNEGNLEEAKRWYN-KS---------GCGMNK-------AIFKLLVPFVCEKGDLDFA 319 (377)
Q Consensus 263 -----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~-~~---------~~~~~~-------~~~~~l~~~~~~~g~~~~a 319 (377)
+..|. ..++..+...+...|++++|.++++ .. ...+.. ..+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 21232 4577888999999999999999998 11 111211 1222333345556667777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 320 FNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
...++...... .....++..+..+|.+.|++++|.++++++.+.
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777766542 225567888999999999999999999988653
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=1.6e-11 Score=106.20 Aligned_cols=299 Identities=9% Similarity=-0.065 Sum_probs=183.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccc----hhHHHHHHHHccCCHHHHHHHHHhcCCCCC-Ccc----HHHH
Q 042154 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEG----FTARLIALYGKAAMFENARKVFDEMPGRNC-EQT----VLSF 130 (377)
Q Consensus 60 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~ 130 (377)
+......+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556667888888888888876654322221 234566777788888888888887654210 011 2235
Q ss_pred HHHHHHHHhCCChhHHHHHHHhchhhc---CCC--cC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHh
Q 042154 131 NALLGACVNSKKFDEVDGLFKDLPHKL---GIE--PD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR----LDLIT 200 (377)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 200 (377)
..+...+...|++++|...+++..... +.. |. ...+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777888888888888888775431 211 22 335566777788888888888888887654221 12345
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH
Q 042154 201 FNTLLLGFYSNGRFADAEKIWETMVNMNVRPN--VRSYN----ARLDGLAIEKQTKKALELVGEMRSKEINP---DVFTF 271 (377)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~g~~p---~~~~~ 271 (377)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66677778888888888888887764311111 11111 22334667888888888888876543211 12245
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-------hcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 042154 272 YALIKGFVNEGNLEEAKRWYN-------KSGCGMNK-AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVD 343 (377)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 343 (377)
..+...+...|++++|...++ ..+..++. ..+..+..++...|+.++|...+++....... ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHH
Confidence 566777778888888888777 22222222 24555666777888888888888887764211 11223
Q ss_pred HHHhcCCHHHHHHHHHhhccCCc
Q 042154 344 RLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
.+...| +....+++...+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 444555 566666666655543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=2.1e-11 Score=105.43 Aligned_cols=299 Identities=10% Similarity=0.007 Sum_probs=204.8
Q ss_pred HHHHHHHhhhcccHHHHHHHHHhcccCCCCccc-h----hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc-----c
Q 042154 24 IGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTN-T----GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE-----G 93 (377)
Q Consensus 24 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~ 93 (377)
.......+...|++++|...++...... +++ . .++..+...+...|++++|.+.+++.......... .
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4444556778999999999999987654 222 2 24667778888899999999999988765322221 1
Q ss_pred hhHHHHHHHHccCCHHHHHHHHHhcCCC----CCC--c-cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcC-CCc--CH
Q 042154 94 FTARLIALYGKAAMFENARKVFDEMPGR----NCE--Q-TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG-IEP--DL 163 (377)
Q Consensus 94 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p--~~ 163 (377)
....+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++...... ..+ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 2345788899999999999999987652 221 2 344667788889999999999999998765421 111 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHH----HHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHH
Q 042154 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD--LITFN----TLLLGFYSNGRFADAEKIWETMVNMNVRP---NVR 234 (377)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 234 (377)
.++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4677788899999999999999999875321111 11111 23345778999999999999887643211 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHH
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSK----EINPDV-FTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVP 308 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~ 308 (377)
.+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++ .....+. ...+.
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~----~g~~~ 330 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc----ccHHH
Confidence 5667788899999999999999987653 222222 356677788889999999999988 1110000 11223
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 042154 309 FVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 309 ~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
.+...| +....+++.+....
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHcc--HHHHHHHHHHHhCC
Confidence 344444 56667777776643
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=2e-11 Score=93.99 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=113.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHH
Q 042154 95 TARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFV 174 (377)
Q Consensus 95 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (377)
+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3456667777777777777777777654 345667777777777778888887777777653 1234556777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777877777777777653 2356667777777777777777777777777654 3455667777777777777777777
Q ss_pred HHHHHHhC
Q 042154 255 LVGEMRSK 262 (377)
Q Consensus 255 ~~~~~~~~ 262 (377)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77776653
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.1e-11 Score=95.54 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042154 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGL 243 (377)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (377)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3555566666677777777777766665422 255566666666666777777777776666543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 042154 244 AIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFN 321 (377)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 321 (377)
...|++++|...++++.+.. +.+...+..+...+...|++++|.++++ ....+.+...+..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666665542 2244455555555555555555555555 11112234445555555555555555555
Q ss_pred HHHHHHh
Q 042154 322 LCKRTFS 328 (377)
Q Consensus 322 ~~~~~~~ 328 (377)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=6e-11 Score=94.99 Aligned_cols=195 Identities=11% Similarity=-0.024 Sum_probs=140.7
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 042154 125 QTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204 (377)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (377)
.++..+......+...|++++|+..|++..+. ...++...+..+..++...|++++|++.+++..+.... +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 45678888888899999999999999988764 32256677777888889999999999999998877433 66788888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 042154 205 LLGFYSNGRFADAEKIWETMVNMNVRPNV-------RSYNARLDGLAIEKQTKKALELVGEMRSKEINPD---VFTFYAL 274 (377)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~---~~~~~~l 274 (377)
..+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 889999999999999999888754 2234 45777778888889999999999988875 454 4566677
Q ss_pred HHHHHhcCCH--HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 042154 275 IKGFVNEGNL--EEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERC 331 (377)
Q Consensus 275 ~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 331 (377)
..+|...|+. +++..+ ...+...|.... ....+.+++|+..+++..+..+
T Consensus 160 ~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL-----ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG-----TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhc-----ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 7777655432 222111 122344444433 3345668889999988888643
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=1.6e-12 Score=120.66 Aligned_cols=169 Identities=7% Similarity=0.010 Sum_probs=145.1
Q ss_pred CCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 16 ATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 16 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
+.|-++.+|+.|...+.+.|++++|+..|++..+.. +.+..+|..+..++.+.|++++|++.|+++.+..+.. ...+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~a~ 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAY 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHH
Confidence 445568899999999999999999999999998875 6678899999999999999999999999999876443 3445
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHH
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFV 174 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 174 (377)
..+..+|...|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+. .| +...+..+..++.
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHH
Confidence 569999999999999999999988765 446889999999999999999999999998764 45 4568999999999
Q ss_pred HcCCHHHHHHHHHHHHH
Q 042154 175 DKGSLDSANTLLYEMEK 191 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~ 191 (377)
..|++++|.+.++++.+
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999998887764
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.40 E-value=3.7e-12 Score=105.35 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhc-----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKL-----GIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKK------G 193 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 193 (377)
...++..+...|...|++++|+..+++..... +..| ...++..+...+...|++++|...++++.+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 45556666666666677766666666654321 1112 2346666667777777777777777666543 1
Q ss_pred -CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 194 -IRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM------NVRP-NVRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 194 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
.+....++..+...|...|++++|...+++..+. +-.| ...++..+...|...|++++|...+++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223456667777777777777777777776653 1112 235566677777777777777777777664
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=2.3e-11 Score=97.39 Aligned_cols=197 Identities=9% Similarity=0.045 Sum_probs=151.4
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCc-cchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFR-TNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
.+.++..+......+...|++++|+..|+...+.. + ++...+..+..++...|++++|++.+++.....+. ....+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 79 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAY 79 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHH
Confidence 45677899999999999999999999999998765 4 67778888999999999999999999999887544 44455
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCCCCCccH-------HHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC---HHH
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTV-------LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD---LVS 165 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~ 165 (377)
..+..+|...|++++|...|++..+.. +.+. ..|..+...+...|++++|+..|++..+ ..|+ ...
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~ 155 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHH
Confidence 579999999999999999999988754 2334 4577888889999999999999999874 3565 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
+..+..++...| ...++++...+.. +...|..... ...+.+++|...|++..+..
T Consensus 156 ~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 156 LYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 777777776544 3445555554322 3444444332 33456899999999998864
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=9.1e-12 Score=115.67 Aligned_cols=168 Identities=7% Similarity=-0.014 Sum_probs=141.6
Q ss_pred CccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHH
Q 042154 53 FRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNA 132 (377)
Q Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 132 (377)
.|.++.+|+.+...+.+.|++++|++.|++..+..+.. ...+..+..+|.+.|++++|+..|++..+.. +-+..+|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 35567889999999999999999999999998876443 3445569999999999999999999988765 346788999
Q ss_pred HHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC
Q 042154 133 LLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN 211 (377)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (377)
+..+|.+.|++++|++.|++..+. .| +..+|..+..++.+.|++++|++.|+++.+.... +...+..+..++...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhc
Confidence 999999999999999999988764 44 4668999999999999999999999999887433 678889999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 042154 212 GRFADAEKIWETMVN 226 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~ 226 (377)
|++++|.+.+++..+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999888887764
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=8e-12 Score=103.30 Aligned_cols=227 Identities=11% Similarity=0.072 Sum_probs=154.8
Q ss_pred cccHHHHHHHHHhccc-------CCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhc-------CCCccchhHHHH
Q 042154 34 ENNLKRLVDKFKKSSD-------LGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK-------DISKEGFTARLI 99 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~ 99 (377)
.|++++|+..|++..+ .. .+....++..+...+...|++++|++.++++.... .+.....+..+.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4555555555544433 22 24467788999999999999999999999887652 122344566799
Q ss_pred HHHHccCCHHHHHHHHHhcCCC------C-CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhc-----CCCc-CHHHH
Q 042154 100 ALYGKAAMFENARKVFDEMPGR------N-CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL-----GIEP-DLVSY 166 (377)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~ 166 (377)
..|...|++++|...|++..+. . .+....++..+...+...|++++|...+++..+.. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999987653 1 13346788889999999999999999999886530 1123 34578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCC-CHHhHHHHHHHHHcCCCHH------HHHHHHHHHHhCCCCCC
Q 042154 167 NTIIKAFVDKGSLDSANTLLYEMEKK-------GIRL-DLITFNTLLLGFYSNGRFA------DAEKIWETMVNMNVRPN 232 (377)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~ 232 (377)
..+...+...|++++|...++++.+. ...+ ....+..+...+...+... .+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88999999999999999999988753 1122 2233443443443333322 222222221111 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 233 VRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888999999999999999999998763
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.37 E-value=9.1e-11 Score=97.73 Aligned_cols=207 Identities=15% Similarity=0.044 Sum_probs=129.2
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh---cCCCcC-HHHHHHHHHHHHHcCCHHHH
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK---LGIEPD-LVSYNTIIKAFVDKGSLDSA 182 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~~~~~~a 182 (377)
++++|...|++. ...|...|++++|...|.+...- .+..++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466776666665 33466677777777777665432 121122 34677777777788888888
Q ss_pred HHHHHHHHHC----CCCC-CHHhHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 042154 183 NTLLYEMEKK----GIRL-DLITFNTLLLGFYSN-GRFADAEKIWETMVNMNVR-PN----VRSYNARLDGLAIEKQTKK 251 (377)
Q Consensus 183 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 251 (377)
+..+++..+. |-.. -..++..+..+|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8777776643 1100 134677777888885 8888888888877653210 01 3457777888888888888
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCCHH------HHHHHHHHHH--hcCCh
Q 042154 252 ALELVGEMRSKEINPDV------FTFYALIKGFVNEGNLEEAKRWYN-KSGCGMNKA------IFKLLVPFVC--EKGDL 316 (377)
Q Consensus 252 a~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~------~~~~l~~~~~--~~g~~ 316 (377)
|+..|++..+....... ..+..+..++...|++++|...++ ...+.|+.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888775322211 145667777888888888888888 444444322 2334455553 45667
Q ss_pred HHHHHHHHHHHh
Q 042154 317 DFAFNLCKRTFS 328 (377)
Q Consensus 317 ~~a~~~~~~~~~ 328 (377)
++|++.|+++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 777777766544
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=2.5e-09 Score=98.32 Aligned_cols=343 Identities=10% Similarity=0.021 Sum_probs=191.6
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCC---hHHHHHHHHHhhhhcC-CCccc
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKR---FRWIEEILEHQKQYKD-ISKEG 93 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~ 93 (377)
|-|...|..++..+.+.+.++.+..+|+.+... +|.....|..-+..-.+.++ ++.+.++|++.....+ .++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 347778888888888888888888888888765 36667777777777777777 8888888888777531 24455
Q ss_pred hhHHHHHHHHccCCH--------HHHHHHHHhcCC-CCC-Cc-cHHHHHHHHHHHHh---------CCChhHHHHHHHhc
Q 042154 94 FTARLIALYGKAAMF--------ENARKVFDEMPG-RNC-EQ-TVLSFNALLGACVN---------SKKFDEVDGLFKDL 153 (377)
Q Consensus 94 ~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 153 (377)
++...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 555555544444332 233456665432 233 22 34456555544321 22344555555554
Q ss_pred hhhcCCCcCHHHH-------------------------------------------------------------------
Q 042154 154 PHKLGIEPDLVSY------------------------------------------------------------------- 166 (377)
Q Consensus 154 ~~~~~~~p~~~~~------------------------------------------------------------------- 166 (377)
+.- ....-..+|
T Consensus 221 L~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 221 LCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 421 000000111
Q ss_pred ------HHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHH-HHHHHHHhCCCCCC
Q 042154 167 ------NTIIKAFVDKG-------SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAE-KIWETMVNMNVRPN 232 (377)
Q Consensus 167 ------~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~ 232 (377)
...+..--..+ ..+.+..+|+++... .+-....|...+..+...|+.++|. .+|++.... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 11111100000 011122334444333 1223444555555555566767775 777777653 3445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 233 VRSYNARLDGLAIEKQTKKALELVGEMRSKE---------INPD------------VFTFYALIKGFVNEGNLEEAKRWY 291 (377)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---------~~p~------------~~~~~~l~~~~~~~~~~~~a~~~~ 291 (377)
...|-..+....+.|++++|..+|+.+.... ..|+ ...|...+....+.|+.+.|+.+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5556667777777788888888887776531 0131 235666666666777788888888
Q ss_pred H-hcCC--CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 292 N-KSGC--GMNKAIFKLLVPFVCEK-GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 292 ~-~~~~--~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
. .... ......|...+..-.+. ++.+.|.++|+..++. ..-++..+...++.....|+.+.|..+|+++.+...
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 7 2111 11223333333223333 3477888888877775 333555666677777777888888888888777654
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=1.9e-09 Score=99.11 Aligned_cols=358 Identities=11% Similarity=0.040 Sum_probs=235.2
Q ss_pred hhhhccccCCCCCCCchHHHHHHHHhhhcccH--------HHHHHHHHhcccCCCC-cc-chhhHHHHHHHHH-------
Q 042154 6 RLLSCSFSTTATATGPKFIGSVIRGIYKENNL--------KRLVDKFKKSSDLGRF-RT-NTGIYTGTVQRLA------- 68 (377)
Q Consensus 6 r~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------~~A~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~------- 68 (377)
.++.+.+...+.+|++..|...+....+.++. +...++|+.+...-|. .+ +...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 34555555554468899999988877665443 3455788877654334 33 4567777776544
Q ss_pred --hcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHH-------------ccCCHHHHHHHHHhc------CCCCC----
Q 042154 69 --NAKRFRWIEEILEHQKQYKDISKEGFTARLIALYG-------------KAAMFENARKVFDEM------PGRNC---- 123 (377)
Q Consensus 69 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~A~~~~~~~------~~~~~---- 123 (377)
..++.+.+..+|+++...+......+|......-. ...+++.|...+.++ ....+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 23457788899998886432222333321111110 012334455555442 11111
Q ss_pred --------Cc-------cHHHHHHHHHHHHhCC-------ChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHH
Q 042154 124 --------EQ-------TVLSFNALLGACVNSK-------KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDS 181 (377)
Q Consensus 124 --------~~-------~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (377)
|+ ....|...+..--..+ ..+.+..+|+++... ++-....|-..+..+...|+.++
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHH
Confidence 11 0234555555433322 123456778888764 33456678888888889999999
Q ss_pred HH-HHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHH
Q 042154 182 AN-TLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN---------VRPN------------VRSYNAR 239 (377)
Q Consensus 182 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~l 239 (377)
|. ++|++.... .+.+...|...+...-+.|+++.|.++|+.+.... -.|+ ...|...
T Consensus 362 a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 362 VITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 96 999999875 44566677888888999999999999999988631 0131 2367778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCC
Q 042154 240 LDGLAIEKQTKKALELVGEMRSK-EINPDVFTFYALIKGFVNE-GNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGD 315 (377)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~ 315 (377)
+....+.|..+.|..+|.+..+. +. +....|...+..-.+. ++.+.|.++|+ -...+.+...+...+......|+
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC
Confidence 88888889999999999999886 21 2234444333333343 55899999999 22234466677888888889999
Q ss_pred hHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 316 LDFAFNLCKRTFSERCLV--DQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
.+.|..+|++.+.....+ ....|..++..-.+.|+.+.+.++.+++.+..+.
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999998864422 3347888888888999999999999999876654
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=2.4e-10 Score=95.13 Aligned_cols=212 Identities=9% Similarity=0.012 Sum_probs=146.4
Q ss_pred ChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCC----CCCcc-HHHHHHHHHHHHhCCChhHH
Q 042154 72 RFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGR----NCEQT-VLSFNALLGACVNSKKFDEV 146 (377)
Q Consensus 72 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 146 (377)
++++|.+.+++. ...|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777664 34566778888888887766432 21122 56788888888899999998
Q ss_pred HHHHHhchhhc---CCCc-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCC-C----HHhHHHHHHHHHcCCCHHH
Q 042154 147 DGLFKDLPHKL---GIEP-DLVSYNTIIKAFVDK-GSLDSANTLLYEMEKKGIRL-D----LITFNTLLLGFYSNGRFAD 216 (377)
Q Consensus 147 ~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 216 (377)
+..|++...-. |-.. ...+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 88888775431 1111 134788888899986 99999999999887542110 1 3568888999999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcC
Q 042154 217 AEKIWETMVNMNVRPNV------RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDV------FTFYALIKGFV--NEG 282 (377)
Q Consensus 217 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~------~~~~~l~~~~~--~~~ 282 (377)
|+..|++..+....... ..|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999876432221 15677788888999999999999998874 3332 13444556664 456
Q ss_pred CHHHHHHHHH-hcCCCCCH
Q 042154 283 NLEEAKRWYN-KSGCGMNK 300 (377)
Q Consensus 283 ~~~~a~~~~~-~~~~~~~~ 300 (377)
++++|++.++ .....|+.
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 7888888887 44444433
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=5.4e-09 Score=85.71 Aligned_cols=177 Identities=11% Similarity=0.001 Sum_probs=107.4
Q ss_pred HHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042154 146 VDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI-RLDLITFNTLLLGFYSNGRFADAEKIWETM 224 (377)
Q Consensus 146 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (377)
|+..|++.... + .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55666665543 2 34444555666777777777777777777765543 225556667777777777777777777777
Q ss_pred HhCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hc
Q 042154 225 VNMNVRP-----NVRSYNARLDGL--AIEK--QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KS 294 (377)
Q Consensus 225 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~ 294 (377)
.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++ ..
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 664 24 244445555442 2223 777777777777654 3443333444446777788888877776 11
Q ss_pred C-----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 295 G-----------CGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 295 ~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
. -+.|+.+...+|......|+ +|.++++++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 1 02345555455555555565 7777777777743
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=3.5e-09 Score=86.85 Aligned_cols=246 Identities=7% Similarity=-0.037 Sum_probs=173.7
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
++-..-.|++..++.-...+.... + ......+.++|+..|+++.. . .-.|....+..+...+ .. +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~--~-~~~~~~~~Rs~iAlg~~~~~------~----~~~~~~~a~~~la~~~-~~-~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVT--D-NTLLFYKAKTLLALGQYQSQ------D----PTSKLGKVLDLYVQFL-DT-K 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCC--C-HHHHHHHHHHHHHTTCCCCC------C----SSSTTHHHHHHHHHHH-TT-T
T ss_pred HHHHHHhhHHHHHHHHHHhcCccc--h-HHHHHHHHHHHHHcCCCccC------C----CCCHHHHHHHHHHHHh-cc-c
Confidence 455556889998888666655432 2 33444567888888887642 1 2234444444444433 32 2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV-RPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
++..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888887665 44566667888999999999999999999987663 1356778888999999999999999999
Q ss_pred HHHhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 042154 258 EMRSKEINP-----DVFTFYALIKGFV--NEG--NLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTF 327 (377)
Q Consensus 258 ~~~~~g~~p-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 327 (377)
+|.+. .| +..+...|..++. ..| +..+|..+|+ .....|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99874 56 3556666666633 334 8999999999 33445653344445558999999999999999776
Q ss_pred hcC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 328 SER---------CLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 328 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
+.. -+-++.++..+|......|+ +|.++++++.+..+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 541 02366677667777777787 889999998876643
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=2.4e-10 Score=93.53 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=77.3
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccc---hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCC--cc
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTN---TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDIS--KE 92 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 92 (377)
+.++..+-.+...+.+.|++++|+..|+.+.+.. |.+ ...+..+..++...|++++|+..++++.+..+.. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 4456777888888888999999999999888764 333 5677888888889999999999999888764322 12
Q ss_pred chhHHHHHHHHc--------cCCHHHHHHHHHhcCCCC
Q 042154 93 GFTARLIALYGK--------AAMFENARKVFDEMPGRN 122 (377)
Q Consensus 93 ~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~ 122 (377)
..+..+..++.. .|++++|...|+++.+..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 233357777777 888888888888877653
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.22 E-value=5.3e-10 Score=91.45 Aligned_cols=210 Identities=11% Similarity=-0.030 Sum_probs=122.6
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C-CCHHhH
Q 042154 125 QTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI-R-LDLITF 201 (377)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~ 201 (377)
.+...+..+...+.+.|++++|+..|+++.....-.|. ...+..+..++.+.|++++|...|+++.+... . .....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34566666677777777788888777777654211111 45666777777777777777777777776522 1 123455
Q ss_pred HHHHHHHHc--------CCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042154 202 NTLLLGFYS--------NGRFADAEKIWETMVNMNVRPNV-RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272 (377)
Q Consensus 202 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 272 (377)
..+..++.. .|++++|...|+++.+.. |+. .....+. .+..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 566666666 777777777777777643 321 1111110 01110000 011235
Q ss_pred HHHHHHHhcCCHHHHHHHHH-hcCCCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCC--h
Q 042154 273 ALIKGFVNEGNLEEAKRWYN-KSGCGM----NKAIFKLLVPFVCEK----------GDLDFAFNLCKRTFSERCLVD--Q 335 (377)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~-~~~~~~----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~--~ 335 (377)
.+...|...|++++|...++ .....| ....+..+..+|... |++++|...|+++++..+... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 56777888888888888888 222223 234666777777765 888999999999888643211 1
Q ss_pred hhHHHHHHHHHhcCCHHHH
Q 042154 336 APLQLVVDRLAKELRVEEA 354 (377)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~A 354 (377)
.....+...+...|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 2334444455555554443
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.21 E-value=4.2e-09 Score=83.12 Aligned_cols=174 Identities=11% Similarity=0.042 Sum_probs=84.1
Q ss_pred HHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCC----CHHHHHHH
Q 042154 145 EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG----RFADAEKI 220 (377)
Q Consensus 145 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 220 (377)
+|++.|++..+. -++..+..+...+...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 344555554332 244455555555555666666666666655543 34445555555554 4 55566666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 042154 221 WETMVNMNVRPNVRSYNARLDGLAI----EKQTKKALELVGEMRSKEIN-PDVFTFYALIKGFVN----EGNLEEAKRWY 291 (377)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~ 291 (377)
|++..+.| +...+..+...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|..++
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 65555543 33444455555544 45555555555555554311 013444445555544 44555555555
Q ss_pred H-hcCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhc
Q 042154 292 N-KSGCGMNKAIFKLLVPFVCEK-G-----DLDFAFNLCKRTFSE 329 (377)
Q Consensus 292 ~-~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 329 (377)
+ ......+...+..|..+|... | ++++|...|++..+.
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5 111112333344444444322 1 455555555555444
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.20 E-value=1.8e-10 Score=88.12 Aligned_cols=159 Identities=10% Similarity=0.054 Sum_probs=72.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHH-
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIAL- 101 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 101 (377)
.+..+...+.+.|++++|+..|+...+.. |.+...+..+...+...|++++|+..++++....+ +..+...+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 34445555556666666666666655443 44455555666666666666666666655554432 22222111111
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC---HHHHHHHHHHHHHcCC
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD---LVSYNTIIKAFVDKGS 178 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~ 178 (377)
+...++..+|...+++..+.. |.+...+..+...+...|++++|...|+++.+. .|+ ...+..+...+...|+
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCC
Confidence 111111122344444443332 123444444444455555555555555444322 221 2244444444444444
Q ss_pred HHHHHHHHHHH
Q 042154 179 LDSANTLLYEM 189 (377)
Q Consensus 179 ~~~a~~~~~~~ 189 (377)
.++|...|++.
T Consensus 160 ~~~A~~~y~~a 170 (176)
T 2r5s_A 160 GNAIASKYRRQ 170 (176)
T ss_dssp SCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 44444444433
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=9.9e-10 Score=79.47 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhc
Q 042154 236 YNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEK 313 (377)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~ 313 (377)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++ ....+.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3344444445555555555555544431 1233444444555555555555555555 111122344455555555666
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 314 GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
|++++|.+.++++.+.... +...+..++..+.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666665554322 3445555566666666666666666655443
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=2e-09 Score=84.68 Aligned_cols=134 Identities=13% Similarity=0.036 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042154 202 NTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNE 281 (377)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 281 (377)
..+..+|.+.|++++|...|++..+.. +-+...+..+...+...|++++|+..|++..+.. +.+...+..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 337788888888888888888888765 3467788888888888899999998888888752 33567777777777665
Q ss_pred CCH--HHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 042154 282 GNL--EEAKRWYNKSGCGMNK--AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQL 340 (377)
Q Consensus 282 ~~~--~~a~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (377)
|+. ..+...++.. ..|+. ..+.....++...|++++|+..|+++++ ..|+......
T Consensus 136 ~~~~~~~~~~~~~~~-~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 136 AEQEKKKLETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 543 3344444422 23333 2344455567778889999999998887 4556554433
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=5.6e-10 Score=87.89 Aligned_cols=180 Identities=12% Similarity=0.072 Sum_probs=83.7
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
...+......+...|++++|+..|+...+.. |.+...|... ...+. ......+...+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN--------------SEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch--------------hhhhHHHHHHHHH
Confidence 3444555667778899999999998887654 3344444440 00000 0000111122455
Q ss_pred HHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCC-
Q 042154 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGS- 178 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~- 178 (377)
+|.+.|++++|...|++..+.. |-+...+..+..++...|++++|+..|++..+. .| +..++..+..++...|+
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHH
Confidence 5555555555555555554433 224445555555555555555555555555432 22 23344444444443332
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 042154 179 -LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNM 227 (377)
Q Consensus 179 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (377)
.+.+...+..... ..|....+.....++...|++++|...|++..+.
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2223333333321 1112222222333444445555555555555543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=2.8e-10 Score=106.09 Aligned_cols=171 Identities=9% Similarity=-0.035 Sum_probs=112.3
Q ss_pred HhcCChHHHHHHHHHhh--------hhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 042154 68 ANAKRFRWIEEILEHQK--------QYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN 139 (377)
Q Consensus 68 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (377)
...|++++|++.++++. +.. +.+...+..+...+...|++++|...|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66777777777777766 332 2333344456777777777777777777776654 3356677777777777
Q ss_pred CCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHH
Q 042154 140 SKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAE 218 (377)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 218 (377)
.|++++|+..|++..+. .| +...|..+..++.+.|++++ ++.|+++.+.+.. +...+..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777653 33 34567777777777777777 7777777765432 5667777777777777777777
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 042154 219 KIWETMVNMNVRPN-VRSYNARLDGLAIEK 247 (377)
Q Consensus 219 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 247 (377)
+.|++..+.+ |+ ...+..+..++...+
T Consensus 555 ~~~~~al~l~--P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 555 RTLDEVPPTS--RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTSCTTS--TTHHHHHHHHHHHTC---
T ss_pred HHHHhhcccC--cccHHHHHHHHHHHHccC
Confidence 7777776654 33 445555666654433
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.3e-09 Score=77.46 Aligned_cols=129 Identities=11% Similarity=0.157 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGF 208 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (377)
.|..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++.+.+. .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 3455555666666666666666665443 122344555566666666666666666666665432 2455566666666
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 209 YSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666666543 23455566666666666666666666666654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=1.9e-09 Score=82.35 Aligned_cols=159 Identities=12% Similarity=0.047 Sum_probs=98.4
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHH-HHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKA-FVD 175 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 175 (377)
.+...+...|++++|...|++..+.. |.+...+..+...+...|++++|+..|++.... .|+...+...... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 45666677777777777777766543 334566677777777777777777777776543 2233222222111 112
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRP-NVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
.++...+...+++..+... .+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2233345667777666532 256677777777777777777777777777654222 24466677777777777777777
Q ss_pred HHHHHH
Q 042154 255 LVGEMR 260 (377)
Q Consensus 255 ~~~~~~ 260 (377)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=4.8e-10 Score=93.02 Aligned_cols=180 Identities=11% Similarity=0.003 Sum_probs=138.5
Q ss_pred HHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHH
Q 042154 37 LKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFD 116 (377)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 116 (377)
.+.....+... .+.+...+..+...+...|++++|+..++++....+..... +..+...+.+.|++++|...++
T Consensus 102 ~~~l~~~l~~~-----lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a-~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 102 EEAIRALLDXV-----LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI-GLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp HHHHHHHHHHH-----SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHH-----cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444 24566778888889999999999999999998876544444 4469999999999999999999
Q ss_pred hcCCCCCCccHHHHHHH-HHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 042154 117 EMPGRNCEQTVLSFNAL-LGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR 195 (377)
Q Consensus 117 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 195 (377)
++.... |+....... ...+.+.++.+.|+..|++.... -+.+...+..+...+...|++++|...|.++.+....
T Consensus 176 ~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 176 TIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp TSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 998765 554433333 33467778888899999888764 2345678889999999999999999999999987433
Q ss_pred C-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 196 L-DLITFNTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 196 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
. +...+..++..+...|+.++|...|++...
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 2 267889999999999999999998887653
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.12 E-value=5.2e-09 Score=83.43 Aligned_cols=188 Identities=8% Similarity=-0.003 Sum_probs=121.9
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCcc-chhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc---chh
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRT-NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE---GFT 95 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 95 (377)
++..+..+...+.+.|++++|+..|+.+.+.....| ....+..+..++.+.|++++|+..++++.+..+.... ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345666777888999999999999999986541122 2357888899999999999999999998876544332 223
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhc
Q 042154 96 ARLIALYGK------------------AAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL 157 (377)
Q Consensus 96 ~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (377)
.+..++.. .|++++|...|+++.+.. |-+..++...... ..+...+
T Consensus 83 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 -MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp -HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred -HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH----
Confidence 34444443 456667777777666543 2222222211110 0000000
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 042154 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD--LITFNTLLLGFYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (377)
......+...+.+.|++++|...|+++.+...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123456778888999999999988887632211 2467778888889999999999998888765
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=2.9e-09 Score=89.26 Aligned_cols=127 Identities=9% Similarity=0.027 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---CC--CHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKK----GIR-LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV---RP--NVR 234 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 234 (377)
+|+.+...|...|++++|+..|++..+. |-. ....++..+...|.. |++++|+..|++..+... .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4444455555555555555555544321 100 012344455555555 666666665555443210 00 023
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSK----EINPD-VFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
++..+...|...|++++|+..|++.... +..+. ...+..+..++...|++++|...++
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555566666666666666655442 11111 1134444445555566666666666
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=5.8e-09 Score=83.14 Aligned_cols=189 Identities=13% Similarity=0.084 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HH
Q 042154 162 DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIR-L-DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNV----RS 235 (377)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 235 (377)
+...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3445666777889999999999999999875332 1 13567778899999999999999999998764 332 23
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 042154 236 YNARLDGLAI------------------EKQTKKALELVGEMRSKEINPDV-FTFYALIKGFVNEGNLEEAKRWYNKSGC 296 (377)
Q Consensus 236 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (377)
+..+..++.. .|++++|...|+++.+. .|+. .........- . +....
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----~------~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----F------LKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----H------HHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----H------HHHHH--
Confidence 4444555543 45677777777777764 2332 2221111100 0 00000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceee
Q 042154 297 GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD--QAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRY 369 (377)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 369 (377)
......+...|.+.|++++|+..|+++++..+... ...+..+..+|.+.|++++|.+.++.+...++.+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01123456788999999999999999998643311 24678899999999999999999999988776544
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=1.5e-08 Score=79.94 Aligned_cols=175 Identities=11% Similarity=-0.032 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 042154 181 SANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK----QTKKALELV 256 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 256 (377)
+|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666653 56667777777777788888888888877765 45666666666666 5 788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH-hcCCCCC---HHHHHHHHHHHHh----cCChHHHHHHHH
Q 042154 257 GEMRSKEINPDVFTFYALIKGFVN----EGNLEEAKRWYN-KSGCGMN---KAIFKLLVPFVCE----KGDLDFAFNLCK 324 (377)
Q Consensus 257 ~~~~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~-~~~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~ 324 (377)
++..+.| +...+..|...|.. .+++++|.++++ .....+. +..+..|...|.. .+++++|++.|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877654 55666667777766 678888888888 3333332 5667777777777 677888888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHhhccCCce
Q 042154 325 RTFSERCLVDQAPLQLVVDRLAKE-L-----RVEEAKELVELGKTNSYC 367 (377)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 367 (377)
+..+. ..++..+..|...|... | +.++|.++++++.+.|.+
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 87775 22445666677766543 3 778888888877776643
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=3.6e-09 Score=98.61 Aligned_cols=174 Identities=10% Similarity=0.028 Sum_probs=140.7
Q ss_pred HhCCChhHHHHHHHhchh-----h-cCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC
Q 042154 138 VNSKKFDEVDGLFKDLPH-----K-LGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN 211 (377)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~-----~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (377)
...|++++|++.+++..+ . ...+.+...+..+..++...|++++|++.|+++.+.... +...+..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 788999999999998861 0 022345568888899999999999999999999986433 778899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 212 GRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY 291 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (377)
|++++|...|++..+.. +.+...|..+..++.+.|++++ +..|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999865 3356788899999999999999 99999998863 335778899999999999999999999
Q ss_pred H-hcCCCCC-HHHHHHHHHHHHhcCC
Q 042154 292 N-KSGCGMN-KAIFKLLVPFVCEKGD 315 (377)
Q Consensus 292 ~-~~~~~~~-~~~~~~l~~~~~~~g~ 315 (377)
+ .....|+ ...+..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 9 5556675 4567777777766554
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=7e-10 Score=82.31 Aligned_cols=143 Identities=10% Similarity=-0.021 Sum_probs=76.0
Q ss_pred HHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCC
Q 042154 28 IRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAM 107 (377)
Q Consensus 28 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (377)
...+...|++++|+..++...... +.+...+-.+...|...|++++|++.+++..+..+. +...+..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344555666666666666665432 334445556666666666666666666666655432 23333346666666666
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHH-HHhchhhcCCCc-CHHHHHHHHHHHHHcC
Q 042154 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGL-FKDLPHKLGIEP-DLVSYNTIIKAFVDKG 177 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 177 (377)
+++|...|++..+.. |-+..+|..+...|.+.|++++|... +++..+. .| ++.+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 666666666665543 22455566666666666666554443 3444332 23 2334444444444433
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=7.2e-09 Score=85.89 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=86.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHH-HHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI-IKAFVD 175 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~ 175 (377)
.+...+...|++++|...|++..+.. |-+...+..+...+.+.|++++|...++++... .|+....... ...+..
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHHHHHHh
Confidence 45555666666666666666665543 234555666666666666666666666665433 3333322221 222445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR-PNVRSYNARLDGLAIEKQTKKALE 254 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 254 (377)
.++.+.|...+++...... .+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|+.++|..
T Consensus 198 ~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 5555556666666555432 24555666666666666666666666666654311 113455566666666666666665
Q ss_pred HHHHH
Q 042154 255 LVGEM 259 (377)
Q Consensus 255 ~~~~~ 259 (377)
.|++.
T Consensus 277 ~~r~a 281 (287)
T 3qou_A 277 XYRRQ 281 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.06 E-value=9e-09 Score=83.30 Aligned_cols=197 Identities=13% Similarity=-0.003 Sum_probs=144.4
Q ss_pred hcccHHHHHHHHHhcccCCCCccchhhHHHH-------HHHHHhcCChHHHHHHHHHhhhhcCC-----Cc---------
Q 042154 33 KENNLKRLVDKFKKSSDLGRFRTNTGIYTGT-------VQRLANAKRFRWIEEILEHQKQYKDI-----SK--------- 91 (377)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~--------- 91 (377)
..++...|.+.|.++.+.. |.....|..+ ...+.+.++..+++..+.......+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5799999999999999876 6667788888 56777777777777666665542111 11
Q ss_pred ------cchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC--H
Q 042154 92 ------EGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD--L 163 (377)
Q Consensus 92 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~ 163 (377)
..+.-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHH
Confidence 1222346778889999999999999998866 54446666777899999999999999866432 1 121 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042154 164 VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD--LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYN 237 (377)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (377)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~ 245 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHH
Confidence 3677888899999999999999999885433243 3356667778888999999999999998864 5533333
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=6.6e-10 Score=82.45 Aligned_cols=111 Identities=9% Similarity=-0.104 Sum_probs=48.5
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHH
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDS 181 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (377)
+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+. -+-+..+|..+..++.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 334444444444444444332 112223334444444555555555555444432 01123344444445555555555
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH
Q 042154 182 ANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216 (377)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (377)
|+..|++..+.... +...+..+...|.+.|++++
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence 55555544443221 34444444445554444443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=6e-09 Score=95.29 Aligned_cols=162 Identities=10% Similarity=-0.003 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALEL 255 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (377)
.|++++|.+.++++.+... .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887643 367889999999999999999999999999875 34678899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCC-CCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcC
Q 042154 256 VGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCG-MNKAIFKLLVPFVCEK---GDLDFAFNLCKRTFSER 330 (377)
Q Consensus 256 ~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~-~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 330 (377)
+++..+.. +.+...+..+..++...|++++|.+.++ ..... .+...+..+..++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998863 3357788999999999999999999999 22223 3577888899999999 99999999999999875
Q ss_pred CCCChhhHHHH
Q 042154 331 CLVDQAPLQLV 341 (377)
Q Consensus 331 ~~~~~~~~~~l 341 (377)
.. +...+..+
T Consensus 159 p~-~~~~~~~l 168 (568)
T 2vsy_A 159 VG-AVEPFAFL 168 (568)
T ss_dssp CC-CSCHHHHT
T ss_pred Cc-ccChHHHh
Confidence 44 33444433
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=1.2e-08 Score=85.50 Aligned_cols=224 Identities=12% Similarity=0.038 Sum_probs=153.0
Q ss_pred ccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 042154 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSAN 183 (377)
Q Consensus 104 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 183 (377)
..|++++|.+++++..+.. +.+ .+...++++.|...|.+. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 3567788888887665421 111 011146677777766654 45677889999999
Q ss_pred HHHHHHHHC----CCC-CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHH
Q 042154 184 TLLYEMEKK----GIR-LDLITFNTLLLGFYSNGRFADAEKIWETMVNM----NVRPN--VRSYNARLDGLAIEKQTKKA 252 (377)
Q Consensus 184 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a 252 (377)
..|.+.... +-. .-..+|+.+...|...|++++|+..|++..+. | .+. ..++..+...|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 999887643 111 11457888899999999999999999987643 2 121 3567788888988 999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH-------hcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 042154 253 LELVGEMRSK----EINP-DVFTFYALIKGFVNEGNLEEAKRWYN-------KSGCGMN-KAIFKLLVPFVCEKGDLDFA 319 (377)
Q Consensus 253 ~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~-~~~~~~l~~~~~~~g~~~~a 319 (377)
+..|++..+. |..+ ...++..+...|...|++++|+..++ ..+..+. ...+..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988753 1111 14578889999999999999999999 1221111 22566677788888999999
Q ss_pred HHHHHHHHhcCCCC-Ch---hhHHHHHHHHHhcCCHHHHHHH
Q 042154 320 FNLCKRTFSERCLV-DQ---APLQLVVDRLAKELRVEEAKEL 357 (377)
Q Consensus 320 ~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~A~~~ 357 (377)
...|++.+ ..... +. .....++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999998 43211 11 1344455555 57787766653
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=1.1e-08 Score=93.57 Aligned_cols=154 Identities=8% Similarity=-0.169 Sum_probs=91.8
Q ss_pred cCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHH
Q 042154 70 AKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGL 149 (377)
Q Consensus 70 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (377)
.|++++|++.++++.+..+. +...+..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35677777777776665332 23344457777777777777777777777654 34566777777777777777777777
Q ss_pred HHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC---CCHHHHHHHHHHHHh
Q 042154 150 FKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN---GRFADAEKIWETMVN 226 (377)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 226 (377)
|++..+. .+.+...+..+..++.+.|++++|.+.+++..+... .+...+..+..++... |++++|.+.+++..+
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 7777653 122455677777777777777777777777776532 2556677777777777 777777777777776
Q ss_pred CC
Q 042154 227 MN 228 (377)
Q Consensus 227 ~~ 228 (377)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=3e-07 Score=76.09 Aligned_cols=215 Identities=8% Similarity=-0.061 Sum_probs=123.4
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCC--ChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHH----HHc---
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSK--KFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAF----VDK--- 176 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~----~~~--- 176 (377)
..++|+.+++.++..+ |-...+|+.--..+...+ ++++++..++.+... .| +..+|+.-...+ ...
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---NEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---CcccHHHHHHHHHHHHHHHHhcccc
Confidence 3456777777776654 334556666666666666 677777777766653 22 223444433333 334
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFA--DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQ------ 248 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 248 (377)
+++++++++++.+.+.... +..+|+.-..++.+.|+++ ++++.++++.+.+ +-|...|+.....+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 5666777777777665333 6666666666666666666 6677777776654 2455666665555555554
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH---hcC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 042154 249 TKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEE-AKRWYN---KSG--CGMNKAIFKLLVPFVCEKGDLDFAFNL 322 (377)
Q Consensus 249 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 322 (377)
++++++.++++.... +-|...|+.+...+.+.|+... +..+.. ..+ -..+...+..+..+|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 666666666666542 2355566666556655555333 223333 111 123455566666666666666666666
Q ss_pred HHHHHh
Q 042154 323 CKRTFS 328 (377)
Q Consensus 323 ~~~~~~ 328 (377)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=1.9e-07 Score=77.27 Aligned_cols=223 Identities=9% Similarity=-0.041 Sum_probs=135.2
Q ss_pred hhccc-HHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcC--ChHHHHHHHHHhhhhcCCCccchhHHHHHHH----Hc
Q 042154 32 YKENN-LKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAK--RFRWIEEILEHQKQYKDISKEGFTARLIALY----GK 104 (377)
Q Consensus 32 ~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 104 (377)
.+.|. .++|+..++.+...+ |.+..+|+.--..+...+ +++++++.++.+....+.....++ .-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~-~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN-YRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH-HHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH-HHHHHHHHHHHh
Confidence 34443 468888888887765 556667777777777777 888888888888776544433333 222222 33
Q ss_pred c---CCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChh--HHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC-
Q 042154 105 A---AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD--EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS- 178 (377)
Q Consensus 105 ~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 178 (377)
. +++++++.+++.+.+.. +-+..+|+.-.-.+.+.+.++ ++++.++++.+. -.-|..+|+.-...+.+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGG
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 3 66777777777777654 446667776666666667766 777777777654 12344556555555555554
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 042154 179 -----LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD-AEKIWETMVNMN--VRPNVRSYNARLDGLAIEKQTK 250 (377)
Q Consensus 179 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 250 (377)
++++++.++.+....+. |...|+-+-..+.+.|+... +..+..++.+.+ -+.+...+..+...|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 66666666666655433 66666666666666655332 334444443321 1235556666666666666666
Q ss_pred HHHHHHHHHHh
Q 042154 251 KALELVGEMRS 261 (377)
Q Consensus 251 ~a~~~~~~~~~ 261 (377)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=3.7e-07 Score=75.81 Aligned_cols=161 Identities=10% Similarity=-0.026 Sum_probs=103.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 042154 168 TIIKAFVDKGSLDSANTLLYEMEKKGI-RLDL----ITFNTLLLGFYSNGRFADAEKIWETMVNMNVR-PN----VRSYN 237 (377)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 237 (377)
..+..+...|++++|.+.+++..+... .++. ..+..+...+...|++++|...|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667778888888888888776422 2221 12334566666777888888888887763221 22 23577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH-------hcCCCCC-HHHH
Q 042154 238 ARLDGLAIEKQTKKALELVGEMRSK-----EINPD-VFTFYALIKGFVNEGNLEEAKRWYN-------KSGCGMN-KAIF 303 (377)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~-----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~-~~~~ 303 (377)
.+...|...|++++|+..|+++.+. +..+. ..++..+...|.+.|++++|..+++ ..+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7778888888888888888877631 11112 2356677777778888888877777 2222222 4567
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 042154 304 KLLVPFVCEKGD-LDFAFNLCKRTFS 328 (377)
Q Consensus 304 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 328 (377)
..+..++.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777777777774 5777777777654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=2.3e-07 Score=73.00 Aligned_cols=125 Identities=11% Similarity=-0.010 Sum_probs=62.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC
Q 042154 132 ALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN 211 (377)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (377)
.+...+...|++++|+..|++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 34444445555555555554442 2344455555555555555555555555554432 12344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 212 GRFADAEKIWETMVNMNVR--------------P-NVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
|++++|...|++..+.... | ....+..+..+|...|++++|...|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555543210 0 1244555556666666666666666666553
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.92 E-value=4e-07 Score=81.20 Aligned_cols=202 Identities=10% Similarity=-0.047 Sum_probs=128.7
Q ss_pred hHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHH
Q 042154 144 DEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWET 223 (377)
Q Consensus 144 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (377)
+.+..+|+++... .+.+...|...+..+.+.|+++.|..++++.... +.+...+.. |....+.++. ++.
T Consensus 196 ~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 196 SRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHH
Confidence 3456778877653 3445667877788888899999999999999887 333333322 2211111111 222
Q ss_pred HHhCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 042154 224 MVNMN---------V---RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN-EGNLEEAKRW 290 (377)
Q Consensus 224 ~~~~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~ 290 (377)
+.+.- . ......|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 22110 0 011245666666666778899999999998 321 2344455432222222 3469999999
Q ss_pred HH--hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 291 YN--KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 291 ~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
|+ ....+-++..+...++...+.|+.+.|..+|+++.+ ....|...+..-...|+.+.+.++++++.+
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99 222222455566677878889999999999998732 466788888777788999999998888764
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=7.2e-08 Score=75.88 Aligned_cols=126 Identities=10% Similarity=-0.061 Sum_probs=91.3
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042154 199 ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGF 278 (377)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 278 (377)
..+..+...+...|++++|...|++.. .|+...+..+...|...|++++|+..|++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345556677778888888888887663 4577788888888888888888888888877653 33566777788888
Q ss_pred HhcCCHHHHHHHHH-hcCCCC-C----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 279 VNEGNLEEAKRWYN-KSGCGM-N----------------KAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 279 ~~~~~~~~a~~~~~-~~~~~~-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
...|++++|.+.++ .....| + ...+..+..++...|++++|.+.|+++.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888887 221111 1 256777777888888888888888887763
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=6.1e-08 Score=80.57 Aligned_cols=205 Identities=9% Similarity=-0.028 Sum_probs=145.7
Q ss_pred CCCCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCC-Cc--
Q 042154 15 TATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDI-SK-- 91 (377)
Q Consensus 15 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 91 (377)
....|+..+...+...+.-.-+ .++..-... .......+...+..+...|++++|.+++++....... ++
T Consensus 40 g~~~~~~~~l~~i~~~l~~~~~-----~~~~~~~~~--~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 40 GAVYPSMDILQGIAAKLQIPII-----HFYEVLIYS--DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp TSCCCCHHHHHHHHHHHTCCTH-----HHHHTTTSS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCCHHHHHHHHHHhCcCHH-----HHhCCCCCC--cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 3445788888888777654322 223322211 1345667777788889999999999999998775322 22
Q ss_pred --cchhHHHHHHHHccCCHHHHHHHHHhcCCCCCC-cc----HHHHHHHHHHHHhCCChhHHHHHHHhchhh---c-CCC
Q 042154 92 --EGFTARLIALYGKAAMFENARKVFDEMPGRNCE-QT----VLSFNALLGACVNSKKFDEVDGLFKDLPHK---L-GIE 160 (377)
Q Consensus 92 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~ 160 (377)
..++..+...+...+++++|...|++..+.... ++ ..+++.+...|...|++++|+..|++..+. . +..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 123445777888888999999999987653211 22 336889999999999999999999988631 1 222
Q ss_pred cC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHcCCC-HHHHHHHHHHHHh
Q 042154 161 PD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKK----GIRLD-LITFNTLLLGFYSNGR-FADAEKIWETMVN 226 (377)
Q Consensus 161 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 226 (377)
+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|..+..+|.+.|+ +++|.+.|++...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 33 337888999999999999999999887742 22222 6788889999999994 6999999987764
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=1.7e-07 Score=77.83 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=74.2
Q ss_pred HHHHHHccCCHHHHHHHHHhcCCCCCC-cc----HHHHHHHHHHHHhCCChhHHHHHHHhchhhcC--CCcC--HHHHHH
Q 042154 98 LIALYGKAAMFENARKVFDEMPGRNCE-QT----VLSFNALLGACVNSKKFDEVDGLFKDLPHKLG--IEPD--LVSYNT 168 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~~~~~ 168 (377)
.+..+...|++++|.+.+.+..+.... ++ ...+..+...+...|++++|+..+++...... ..+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 444445555555555555443322100 00 11222334444555555555555555432100 0111 235555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH---C-CCCC--CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCC-CHHHHH
Q 042154 169 IIKAFVDKGSLDSANTLLYEMEK---K-GIRL--DLITFNTLLLGFYSNGRFADAEKIWETMVNMN----VRP-NVRSYN 237 (377)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~ 237 (377)
+...|...|++++|...++++.+ . +..+ ...++..+...|...|++++|...+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555566666666665555541 1 1011 11355555556666666666666665544321 101 134555
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHH
Q 042154 238 ARLDGLAIEKQTKKA-LELVGEM 259 (377)
Q Consensus 238 ~l~~~~~~~~~~~~a-~~~~~~~ 259 (377)
.+...|...|++++| ...+++.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 555666666666666 4445443
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.89 E-value=2e-08 Score=82.91 Aligned_cols=191 Identities=10% Similarity=0.037 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
...+..+...+.+.|++++|...|+++.+... .+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455555666666666666666666665422 255556666666666666666666666666543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHHhcCChHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDV-FTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVCEKGDLDFA 319 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a 319 (377)
+...|++++|...|++..+.. |+. ..+...+....+. .++..... ......+......+... ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 666666666666666655431 110 0011111111111 11111111 22223333333333222 25677777
Q ss_pred HHHHHHHHhcCCCCChh-hHHHHHHHHHhc-CCHHHHHHHHHhhccC
Q 042154 320 FNLCKRTFSERCLVDQA-PLQLVVDRLAKE-LRVEEAKELVELGKTN 364 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 364 (377)
++.++++.+. .|+.. ....+...+.+. +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7777766653 33332 223333334443 5677777777777654
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=2.1e-07 Score=77.30 Aligned_cols=162 Identities=11% Similarity=0.001 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---CCC--HH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDL-----ITFNTLLLGFYSNGRFADAEKIWETMVNMNV---RPN--VR 234 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 234 (377)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444455566666666666666665554221110 1122334445555566666666665553211 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCCC-------H
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSK-EINPD-----VFTFYALIKGFVNEGNLEEAKRWYN-KSGCGMN-------K 300 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~-------~ 300 (377)
+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|..+++ .....++ .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4555555566666666666666555421 00111 1344555555555555555555555 1100011 3
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHH
Q 042154 301 AIFKLLVPFVCEKGDLDFA-FNLCKRT 326 (377)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~a-~~~~~~~ 326 (377)
.+|..+..+|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444555555555555555 4444443
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=6.5e-06 Score=73.43 Aligned_cols=327 Identities=9% Similarity=0.007 Sum_probs=194.6
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCC-hHHHHHHHHHhhhh-c-CCCccchhHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKR-FRWIEEILEHQKQY-K-DISKEGFTARLI 99 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~-~~~~~~~~~~l~ 99 (377)
.|...+..+-. |+++.+..+|+..... .|+...|...+....+.+. .+....+|+.+... | ...+..++...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45555555544 8899999999999874 4688899988887777663 45667778877664 3 233556666666
Q ss_pred HHHH----ccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh-------------CCChhHHHHHHHhchhhcCCCcC
Q 042154 100 ALYG----KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN-------------SKKFDEVDGLFKDLPHKLGIEPD 162 (377)
Q Consensus 100 ~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~p~ 162 (377)
..+. ..++.+.+.++|++.+......-...|......-.. .+.+..|..+++.+..... ..+
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~-~~s 171 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR-GWS 171 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCS
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh-hcc
Confidence 6544 246788899999999874211112222222211100 1122334444444322100 012
Q ss_pred HHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 042154 163 LVSYNTIIKAFVDKG--S-----LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRS 235 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (377)
...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 335555544322211 0 345778899988763 446788888899999999999999999999987 334333
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHhC-----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CCHHHHHH
Q 042154 236 YNARLDGLAIEKQTKKAL-ELVGEMRSK-----EINP---DVFTFYALIKGFVNEGNLEEAKRWYNKSGCG-MNKAIFKL 305 (377)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~-----g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 305 (377)
|. .|....+.++.. .+.+..... +..+ ....|...+....+.++.+.|+.+|+....+ .+...|..
T Consensus 249 ~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~ 324 (493)
T 2uy1_A 249 SL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIY 324 (493)
T ss_dssp HH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHH
Confidence 32 222222222221 122111000 0001 1245667777777788999999999933322 23444443
Q ss_pred HHHHHHh-cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 306 LVPFVCE-KGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 306 l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
....-.. .++.+.|..+|+...+... -++..+...++...+.|+.+.|..+++++.
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3332222 3369999999999998642 245566677888889999999999999984
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=2.1e-07 Score=69.83 Aligned_cols=126 Identities=8% Similarity=-0.035 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcC-CCCCHHHHHHHHHHHHh
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSG-CGMNKAIFKLLVPFVCE 312 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~-~~~~~~~~~~l~~~~~~ 312 (377)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++ ... .+.+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455555666666666666666665542 2245566666666667777777777666 111 12345566677777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHhhc
Q 042154 313 KGDLDFAFNLCKRTFSERCLVDQAPLQL--VVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 313 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
.|++++|.+.++++.+.... +...+.. ++..+.+.|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777765432 3444432 3333666777777777766553
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=3.6e-08 Score=71.02 Aligned_cols=119 Identities=7% Similarity=0.042 Sum_probs=75.7
Q ss_pred CCCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhH
Q 042154 17 TATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTA 96 (377)
Q Consensus 17 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 96 (377)
.+.+...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|++.++++.+..+. +...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 88 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYT 88 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHH
Confidence 33456677777777888888888888888777654 445667777777777777777777777777665432 233333
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVN 139 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (377)
.+..++...|++++|.+.|++..+.. +.+...+..+..++..
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 56666667777777777776665543 2233444444444443
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.5e-07 Score=66.06 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLA 244 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (377)
.+......+.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|+..|++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 455555566666666666666666555432 245555666666666666666666666665543 234455556666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 042154 245 IEKQTKKALELVGEMRSK 262 (377)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~ 262 (377)
..|++++|+..|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666666553
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=2e-08 Score=71.82 Aligned_cols=97 Identities=9% Similarity=0.122 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHH
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIAL 101 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (377)
..+......+.+.|++++|++.|++..+.. |.+...|..+..++...|++++|++.+++..+..+.....++ .+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~-~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI-RKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH-HHHHH
Confidence 345555555666666666666666555543 444555555555555666666666665555554333222222 35555
Q ss_pred HHccCCHHHHHHHHHhcCCC
Q 042154 102 YGKAAMFENARKVFDEMPGR 121 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~ 121 (377)
+...|++++|.+.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.5e-07 Score=76.12 Aligned_cols=123 Identities=14% Similarity=-0.025 Sum_probs=61.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc
Q 042154 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD--VFTFYALIKGFVNE 281 (377)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~ 281 (377)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4445555566666666665555433 333233344445555666666666665443321 010 12444555555666
Q ss_pred CCHHHHHHHHH--hcCCC-CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 282 GNLEEAKRWYN--KSGCG-MN--KAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 282 ~~~~~a~~~~~--~~~~~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
|++++|+..|+ ..+.. |. .........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666 12211 32 223344444555666666666666666553
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=3.3e-07 Score=68.75 Aligned_cols=127 Identities=9% Similarity=0.068 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGF 208 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (377)
.+..+...+...|++++|...|++.... .+.+..++..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 4445555556666666666666655443 122344555555666666666666666666655422 2455555566666
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 042154 209 YSNGRFADAEKIWETMVNMNVRPNVRSYNA--RLDGLAIEKQTKKALELVGEM 259 (377)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 259 (377)
...|++++|...|++..+.. +.+...+.. .+..+...|++++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666655543 122333322 222244556666666555544
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=9e-08 Score=74.60 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
+..+...+...|++++|.+.+++..+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44555566666666666666655544
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=6.3e-08 Score=75.49 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=41.0
Q ss_pred hhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcC-----CCccchhHHHHHHHHccC
Q 042154 32 YKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKD-----ISKEGFTARLIALYGKAA 106 (377)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~ 106 (377)
...|++++|.+.++.+.... .....++..+...+...|++++|...+++...... ......+..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34677777777444333211 23455666666666677777777776666544211 011122233444455555
Q ss_pred CHHHHHHHHHhc
Q 042154 107 MFENARKVFDEM 118 (377)
Q Consensus 107 ~~~~A~~~~~~~ 118 (377)
++++|...+++.
T Consensus 81 ~~~~A~~~~~~a 92 (203)
T 3gw4_A 81 NWDAARRCFLEE 92 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555544443
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.78 E-value=1.6e-07 Score=69.20 Aligned_cols=94 Identities=7% Similarity=-0.111 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHh
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCE 312 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~ 312 (377)
.+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|+ .....| ++..|..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 44455555556666666666666655542 2244555555566666666666666665 222222 34455555556666
Q ss_pred cCChHHHHHHHHHHHhc
Q 042154 313 KGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 313 ~g~~~~a~~~~~~~~~~ 329 (377)
.|++++|.+.|+++++.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665553
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.76 E-value=5.5e-07 Score=63.69 Aligned_cols=95 Identities=12% Similarity=0.206 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLA 244 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (377)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 44444455555555555555555554432 1234445555555555555555555555555432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 042154 245 IEKQTKKALELVGEMRS 261 (377)
Q Consensus 245 ~~~~~~~a~~~~~~~~~ 261 (377)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555544
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=2.3e-08 Score=73.86 Aligned_cols=109 Identities=11% Similarity=0.030 Sum_probs=75.2
Q ss_pred HHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCC
Q 042154 44 FKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNC 123 (377)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 123 (377)
++.+.+.. |.+...+..+...+.+.|++++|++.|+++....+. +...+..+..+|...|++++|+..|++..+..
T Consensus 25 l~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~- 100 (151)
T 3gyz_A 25 LKDINAIP--DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG- 100 (151)
T ss_dssp TGGGCCSC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHhCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-
Confidence 34444433 445666777777777788888888888877776543 33344457777778888888888887777654
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 124 EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
|.++..|..+..+|.+.|++++|+..|++..+.
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345667777777788888888888888777654
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=7.6e-08 Score=79.44 Aligned_cols=192 Identities=7% Similarity=-0.028 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTL 204 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (377)
+...+..+...+.+.|++++|+..|++.... .| +...|..+..++.+.|++++|...++++.+... .+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4567777788888888888888888887754 33 566788888888888888888888888887643 367778888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 205 LLGFYSNGRFADAEKIWETMVNMNVRPNV-RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
..+|...|++++|...|++..+.+ |+. ..+...+....+ ..++.. +........+.+......+.. + ..|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~ 150 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAE 150 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHH
Confidence 888888888888888888877542 211 011111111111 111111 112222223344444333322 2 2688
Q ss_pred HHHHHHHHH-hcCCCCCHHH-HHHHHHHHHhc-CChHHHHHHHHHHHhc
Q 042154 284 LEEAKRWYN-KSGCGMNKAI-FKLLVPFVCEK-GDLDFAFNLCKRTFSE 329 (377)
Q Consensus 284 ~~~a~~~~~-~~~~~~~~~~-~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 329 (377)
.++|.+.++ .....|+... ...+...+.+. +.+++|.++|.++.+.
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888887 5555665443 33344444444 6678888888877653
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=6.7e-07 Score=63.25 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCCHHHHHHHHHHHH
Q 042154 234 RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--KSGCGMNKAIFKLLVPFVC 311 (377)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~l~~~~~ 311 (377)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++ ....+.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 445555555666666666666666655532 2244555566666666666666666666 1111334556666677777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 042154 312 EKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAK 347 (377)
Q Consensus 312 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (377)
..|++++|...++++.+.... +...+..+..++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 777777777777777665432 44455555554443
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=4.7e-07 Score=64.99 Aligned_cols=116 Identities=5% Similarity=-0.091 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHH
Q 042154 232 NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPF 309 (377)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~ 309 (377)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++ .... +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44556666667777777777777777766642 2355666677777777777777777777 1112 3355677777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 042154 310 VCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKEL 349 (377)
Q Consensus 310 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (377)
+...|++++|.+.|++..+.... +...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 88888888888888877765432 4455666666666554
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=3.5e-06 Score=70.59 Aligned_cols=176 Identities=6% Similarity=-0.069 Sum_probs=105.3
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcC-ChHHHHHHHHHhhhhcCCCccchhHHHHHHHHcc-C-C
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAK-RFRWIEEILEHQKQYKDISKEGFTARLIALYGKA-A-M 107 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 107 (377)
..+.+..++|+++++.+...+ |.+..+|+.--..+...| .++++++.++.+....+.....+. .-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~-hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH-HRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH-HHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHhcCCC
Confidence 334455567888888887765 556666777767776777 478888888887776544333333 344444444 5 6
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChh--------HHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC-
Q 042154 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD--------EVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS- 178 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 178 (377)
+++++++++++.+.. +-+..+|+.-.-.+.+.+.++ ++++.++++.+. ..-|..+|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 778888888877765 446666666555555444444 666666666553 12344556665555555554
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC
Q 042154 179 ------LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213 (377)
Q Consensus 179 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (377)
++++++.++++....+. |...|+-+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 45666666666655332 55555555544444443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=3.4e-07 Score=65.41 Aligned_cols=95 Identities=8% Similarity=0.038 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGF 208 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (377)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...++...+... .+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 3444444444444444444444444332 111233344444444444444444444444443311 1233444444444
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 042154 209 YSNGRFADAEKIWETMVN 226 (377)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~ 226 (377)
...|++++|...|++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 444444444444444443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=5.7e-08 Score=71.67 Aligned_cols=98 Identities=5% Similarity=-0.106 Sum_probs=48.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 042154 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLG 135 (377)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 135 (377)
+...+..+...+...|++++|+..|+++....+. +...+..+..+|...|++++|...|++..... |.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3444444555555555555555555555444322 22222235555555555555555555554432 223444555555
Q ss_pred HHHhCCChhHHHHHHHhchh
Q 042154 136 ACVNSKKFDEVDGLFKDLPH 155 (377)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~ 155 (377)
+|...|++++|...|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=4.6e-07 Score=64.73 Aligned_cols=116 Identities=8% Similarity=-0.059 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcC-CCCCHHHHHHHHHHH
Q 042154 233 VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSG-CGMNKAIFKLLVPFV 310 (377)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~-~~~~~~~~~~l~~~~ 310 (377)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++ ... .+.+...+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3445555566666666666666666665542 2245566666666666777777776666 111 123455666677777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 042154 311 CEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELR 350 (377)
Q Consensus 311 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (377)
...|++++|.+.+++..+.... +...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 7777777777777777765432 45566666666666655
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=1.6e-05 Score=66.62 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 298 MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
+....+..+++.|...|+.++|.++++.+.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 45667777777888888888888888877543
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.69 E-value=4.8e-07 Score=76.65 Aligned_cols=130 Identities=11% Similarity=-0.035 Sum_probs=71.5
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 197 DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN--------------VRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
+...+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777777777788888877777776531111 345555555566666666666666655554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 042154 263 EINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFA-FNLCKRTF 327 (377)
Q Consensus 263 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 327 (377)
. +.+...+..+..+|...|++++|...|+ .....| +...+..+..++.+.|+.++| ...|+.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234455555555555555555555555 212222 344455555555555555555 23444443
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.68 E-value=6.6e-08 Score=73.73 Aligned_cols=122 Identities=9% Similarity=0.094 Sum_probs=85.4
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHH-HHccCCH-
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIAL-YGKAAMF- 108 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 108 (377)
+...|++++|+..|+...+.. +.+...|..+...+...|++++|+..++++....+.. ...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcc
Confidence 456778888888888877654 5567778888888888888888888888887765433 3344456666 6677887
Q ss_pred -HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 109 -ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 109 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
++|...|++..+.. +.+...+..+...+...|++++|...|++....
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888877654 335667777777888888888888888877654
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=1.7e-07 Score=71.43 Aligned_cols=121 Identities=6% Similarity=0.048 Sum_probs=70.6
Q ss_pred HhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHcCCCH--
Q 042154 138 VNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLG-FYSNGRF-- 214 (377)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 214 (377)
...|++++|+..+++.... .+.+...|..+...+...|++++|...|+++.+... .+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 3455666666666665543 123445666666666667777777777766665432 245555566666 5566666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 215 ADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
++|...+++..+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 67777776666543 234555666666666677777777777666664
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=1.7e-07 Score=69.08 Aligned_cols=98 Identities=14% Similarity=-0.030 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 042154 126 TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLL 205 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (377)
+...+..+...+.+.|++++|+..|++.... -+.+...|..+..++...|++++|+..|+++..... .+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 3444555555556666666666666555432 122344555555556666666666666666555432 2444555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 042154 206 LGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~ 226 (377)
.+|...|++++|...|++..+
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666655554
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=7.6e-07 Score=75.46 Aligned_cols=128 Identities=8% Similarity=-0.059 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD----------------LVSYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
...+..+...+.+.|++++|+..|++.... .|+ ..+|..+..++.+.|++++|+..++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555556666666666666666665543 222 2455555556666666666666666655
Q ss_pred HCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 042154 191 KKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKA-LELVGEM 259 (377)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 259 (377)
+... .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.++| ...|+.|
T Consensus 224 ~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 224 ELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 245555555666666666666666666555543 22344555555555555555555 2344443
No 149
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=4.8e-06 Score=73.14 Aligned_cols=200 Identities=10% Similarity=-0.021 Sum_probs=141.5
Q ss_pred HHHHhhhcccHHHHHHHHHhcccCCCCccch---------------hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCC-
Q 042154 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNT---------------GIYTGTVQRLANAKRFRWIEEILEHQKQYKDIS- 90 (377)
Q Consensus 27 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 90 (377)
-.+.+.+.|++++|++.|..+.+...-..+. ..+..++..|...|++++|.+.+..+.......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3466788999999999999987654222221 237788999999999999999999877642222
Q ss_pred cc----chhHHHHHHHHccCCHHHHHHHHHhcCC----CC-CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCC--
Q 042154 91 KE----GFTARLIALYGKAAMFENARKVFDEMPG----RN-CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGI-- 159 (377)
Q Consensus 91 ~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 159 (377)
.. .+.+.+...+...|+.+.|..+++.... .+ ...-..++..+...|...|++++|..++++......-
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 2233344455567889999988877532 11 1223567788899999999999999999887543211
Q ss_pred -Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 160 -EP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKK----GIRLD--LITFNTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 160 -~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
.+ ...++..++..|...|++++|...+++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2457888899999999999999999887642 11211 34566677778888999999988876653
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=2.7e-08 Score=77.46 Aligned_cols=171 Identities=9% Similarity=-0.046 Sum_probs=77.0
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCH
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMF 108 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (377)
......|+++++.+.++.-.... ......+..+...+...|++++|++.+++.....+....... .. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~---------~ 79 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD-QI---------L 79 (198)
T ss_dssp ----------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC-HH---------H
T ss_pred hhhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch-hh---------H
Confidence 34444566666666665433221 223445666677777777777777777777654322110000 00 0
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 042154 109 ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYE 188 (377)
Q Consensus 109 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (377)
..-.. ......|..+..+|...|++++|+..+++.... .+.+...+..+..++...|++++|...|++
T Consensus 80 ~~~~~----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 80 LDKKK----------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 001244555555566666666666666655443 122344555556666666666666666666
Q ss_pred HHHCCCCCCHHhHHHHHHHHHcCCCHHHHH-HHHHHH
Q 042154 189 MEKKGIRLDLITFNTLLLGFYSNGRFADAE-KIWETM 224 (377)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~ 224 (377)
..+... .+...+..+..++...++..++. ..|..+
T Consensus 148 al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 148 AASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHST-TCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655422 24445555555555555444444 333333
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=3.5e-06 Score=74.05 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=12.6
Q ss_pred HHHHHccCCHHHHHHHHHhcCC
Q 042154 99 IALYGKAAMFENARKVFDEMPG 120 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~ 120 (377)
...+.+.|++++|++.|..+.+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~ 32 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLD 32 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 3445556666666666665544
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=4.4e-07 Score=66.34 Aligned_cols=98 Identities=8% Similarity=-0.054 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 042154 56 NTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLG 135 (377)
Q Consensus 56 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 135 (377)
+...+..+...+...|++++|++.|+++....+. +...+..+..++...|++++|...|++..... |.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3444445555555566666666666655554332 22233345555556666666666666555443 234445555555
Q ss_pred HHHhCCChhHHHHHHHhchh
Q 042154 136 ACVNSKKFDEVDGLFKDLPH 155 (377)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~ 155 (377)
++...|++++|...|++...
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666655543
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.58 E-value=4e-07 Score=65.10 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=61.7
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc------chh
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE------GFT 95 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 95 (377)
..+..+...+.+.|++++|+..|++..+.. |.+...|..+..++...|++++|++.+++..+..+.... ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 356667777777788888888887777654 556667777777777777777777777776654322211 122
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCC
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPG 120 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~ 120 (377)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344555555666666666555443
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=1.9e-06 Score=61.52 Aligned_cols=104 Identities=11% Similarity=0.129 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMN--VRPN----VRSYNA 238 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~ 238 (377)
++..+...+.+.|++++|+..|+++.+... .+...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 455555666666666666666666655432 245556666666666666666666666555421 0011 124455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTF 271 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 271 (377)
+..++...|++++|++.|++.+.. .||+.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 555666666666666666665552 3444433
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3e-06 Score=60.28 Aligned_cols=94 Identities=18% Similarity=0.125 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (377)
+......+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 34444444455555555555555444321 134444445555555555555555555544432 1234444444555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 042154 246 EKQTKKALELVGEMRS 261 (377)
Q Consensus 246 ~~~~~~a~~~~~~~~~ 261 (377)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555554444
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=1.3e-06 Score=63.85 Aligned_cols=97 Identities=13% Similarity=-0.041 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 042154 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLL 206 (377)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (377)
...+..+...+.+.|++++|+..|++.... -+.+...|..+..++...|++++|...|+++...... +...+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 344445555566666666666666655443 1223445555556666666666666666666554322 4445555566
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 042154 207 GFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~ 226 (377)
+|...|++++|...|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665554
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=5.5e-06 Score=57.71 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGF 208 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (377)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 3444444444455555555555444332 111333444444444444555555544444444321 1333444444444
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 042154 209 YSNGRFADAEKIWETMVN 226 (377)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~ 226 (377)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444443
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=6.7e-06 Score=57.25 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
...+..+...+...|++++|...++....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34566666777777777777777777776532 256667777777777777777777777777654 2345666777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 042154 243 LAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~ 262 (377)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777777664
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.54 E-value=2.7e-06 Score=66.03 Aligned_cols=95 Identities=9% Similarity=-0.206 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042154 269 FTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLA 346 (377)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (377)
..+..+..+|...|++++|...++ .... +.+...+..+..+|...|++++|++.|++.++.... +...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 556667777777777777777777 2222 335566777777778888888888888877775433 5556666777777
Q ss_pred hcCCHHHHH-HHHHhhccC
Q 042154 347 KELRVEEAK-ELVELGKTN 364 (377)
Q Consensus 347 ~~g~~~~A~-~~~~~~~~~ 364 (377)
..|+.+++. ..+..+...
T Consensus 168 ~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 777766665 445554443
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.53 E-value=4.8e-07 Score=62.67 Aligned_cols=100 Identities=12% Similarity=-0.028 Sum_probs=57.8
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCC-CccchhHHH
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDI-SKEGFTARL 98 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 98 (377)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.+++..+..+. .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 45556666666666666777766666665543 344555666666666666666666666666554322 022333345
Q ss_pred HHHHHcc-CCHHHHHHHHHhcCCC
Q 042154 99 IALYGKA-AMFENARKVFDEMPGR 121 (377)
Q Consensus 99 ~~~~~~~-~~~~~A~~~~~~~~~~ 121 (377)
..++... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5566666 6666666666665544
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=8.5e-05 Score=61.92 Aligned_cols=137 Identities=10% Similarity=0.024 Sum_probs=71.1
Q ss_pred ccCCH-HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC----------hhHHHHHHHhchhhcCCCcCHHHHHHHHHH
Q 042154 104 KAAMF-ENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK----------FDEVDGLFKDLPHKLGIEPDLVSYNTIIKA 172 (377)
Q Consensus 104 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (377)
+.|.+ ++|+.+++.+...+ |-+..+|+.--..+...+. +++++.+++.+... .+-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34443 36777777777665 3344455544333333222 45555666555543 12233455554445
Q ss_pred HHHcC--CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042154 173 FVDKG--SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR-FADAEKIWETMVNMNVRPNVRSYNARLDGLAI 245 (377)
Q Consensus 173 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (377)
+.+.+ ++++++.+++.+.+.... |...|+.-..++...|. ++++++.++++.+.. +-|...|+.....+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 55555 356666666666655333 55555555555555555 356666666666554 2355555555444443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=3.9e-06 Score=62.85 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 042154 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLL 206 (377)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (377)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.... +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3344444444444444444444444443320 113334444444444444444444444444443211 3344444444
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 042154 207 GFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~ 225 (377)
+|...|++++|...|++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 4444444444444444444
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.9e-06 Score=59.64 Aligned_cols=94 Identities=9% Similarity=-0.077 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHh
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCE 312 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~ 312 (377)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++ .....| +...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34445555555666666666666555532 2244555556666666666666666666 222222 34555666666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 042154 313 KGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 313 ~g~~~~a~~~~~~~~~~ 329 (377)
.|++++|.+.|++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.49 E-value=1.6e-06 Score=61.37 Aligned_cols=95 Identities=12% Similarity=-0.087 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 042154 271 FYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKE 348 (377)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (377)
+..+...+.+.|++++|...++ .....| +...|..+..++...|++++|+..|++.++..+. +...+..+..+|.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3445556667777777777777 222233 5666777777777777777777777777776443 556677777777777
Q ss_pred CCHHHHHHHHHhhccCCc
Q 042154 349 LRVEEAKELVELGKTNSY 366 (377)
Q Consensus 349 g~~~~A~~~~~~~~~~~~ 366 (377)
|++++|.+.++++.+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 778888777777776544
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=3.4e-06 Score=60.87 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHH
Q 042154 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVP 308 (377)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~ 308 (377)
.+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++ .... +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 466788888888999999999999999888753 3357788888888889999999999888 2222 335678888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 042154 309 FVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 309 ~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
++...|++++|...|+++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHC
Confidence 8999999999999998888753
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=2.9e-06 Score=58.58 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRP--NVRSYNARLDG 242 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 242 (377)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...|++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 344444445555555555555555544322 234445555555555555555555555555443 12 34445555555
Q ss_pred HHhc-CCHHHHHHHHHHHHhC
Q 042154 243 LAIE-KQTKKALELVGEMRSK 262 (377)
Q Consensus 243 ~~~~-~~~~~a~~~~~~~~~~ 262 (377)
+... |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555543
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=1.4e-06 Score=65.39 Aligned_cols=97 Identities=7% Similarity=0.017 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH
Q 042154 57 TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA 136 (377)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (377)
...+..+...+...|++++|++.|++.....+. +...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334444444444555555555555544443322 22223334555555555555555555544433 2234455555555
Q ss_pred HHhCCChhHHHHHHHhchh
Q 042154 137 CVNSKKFDEVDGLFKDLPH 155 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~ 155 (377)
|...|++++|+..|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=6.2e-06 Score=59.46 Aligned_cols=96 Identities=6% Similarity=-0.075 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042154 163 LVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDG 242 (377)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (377)
...+..+...+...|++++|...|........ .+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 33444444444455555555555544444321 134444444445555555555555555444432 1233444444445
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042154 243 LAIEKQTKKALELVGEMR 260 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~ 260 (377)
+...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555554444
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=6e-07 Score=63.52 Aligned_cols=98 Identities=10% Similarity=-0.069 Sum_probs=71.4
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHH
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIAL 101 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (377)
..+..+...+.+.|++++|+..|+.+.+.. |.+...|..+..++...|++++|+..+++..+..+.... .+..+..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-~~~~la~~ 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-VHAALAVS 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 345566677778888888888888887765 556777788888888888888888888887776544333 33357778
Q ss_pred HHccCCHHHHHHHHHhcCCCC
Q 042154 102 YGKAAMFENARKVFDEMPGRN 122 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~ 122 (377)
+...|++++|...|++..+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888777653
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2.7e-06 Score=62.27 Aligned_cols=101 Identities=7% Similarity=-0.024 Sum_probs=74.0
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccc---hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchh
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTN---TGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
.+...+..+...+...|++++|+..|+...+.. +.+ ...+..+...+...|++++|++.+++.....+.. ...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHH
Confidence 456678888888888999999999998887654 222 5677777888888888888888888877664332 3334
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCCC
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGRN 122 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 122 (377)
..+..++...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 457777777888888888887776543
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1e-05 Score=59.03 Aligned_cols=96 Identities=13% Similarity=-0.034 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHH
Q 042154 232 NVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPD----VFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKL 305 (377)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~ 305 (377)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...++ .... +.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444555555555556666666666555543 233 3455555556666666666666666 1111 224455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
+..++...|++++|.+.|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666667777777777666664
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=5e-06 Score=59.17 Aligned_cols=107 Identities=7% Similarity=0.060 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----hcCCCCC----HHHHHH
Q 042154 235 SYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-----KSGCGMN----KAIFKL 305 (377)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~~~----~~~~~~ 305 (377)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++ .....++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444555555555555555555555432 2234455555555555666666665555 1111112 445666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR 344 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (377)
+..++...|++++|.+.|+++.+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6677777777777777777777643 345444444433
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=2e-06 Score=61.36 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHhH
Q 042154 128 LSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI--RLD----LITF 201 (377)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 201 (377)
..+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...++++..... .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34444455555555555555555554432 122334444455555555555555555555443311 011 3344
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 202 NTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
..+..++...|++++|.+.|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444455555555555555555444
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=1.2e-06 Score=65.19 Aligned_cols=62 Identities=8% Similarity=-0.120 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC---CChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSER--CL---VDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
.+..+...+...|++++|.+.+++..+.. .. ....++..+...+...|++++|.+.++++.+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44555556666666666666666655431 00 0123455566667777777777777666543
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=3.3e-06 Score=62.68 Aligned_cols=132 Identities=11% Similarity=-0.069 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc-----chhHHHHHHHHccCCHHHHHHHHHhcCCC----CCC-ccHH
Q 042154 59 IYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE-----GFTARLIALYGKAAMFENARKVFDEMPGR----NCE-QTVL 128 (377)
Q Consensus 59 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 128 (377)
++..+...+...|++++|++.+++.......... ..+..+...+...|++++|...+++..+. +-+ ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555555555555554433111100 12233444555555555555555443321 000 0123
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhhc---CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHKL---GIEP-DLVSYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
.+..+...+...|++++|...+++..... +..+ ...++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444555555555555555555443210 0000 11234444444455555555555554443
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.34 E-value=1e-05 Score=71.61 Aligned_cols=86 Identities=10% Similarity=-0.011 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042154 269 FTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLA 346 (377)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (377)
..|..+..+|.+.|++++|+..++ .... +.+...|..+..+|...|++++|+..|+++++.... +...+..+..++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344455555555555555555555 1111 223444555555555555555555555555553322 3334455555555
Q ss_pred hcCCHHHHH
Q 042154 347 KELRVEEAK 355 (377)
Q Consensus 347 ~~g~~~~A~ 355 (377)
+.|+.++|.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.32 E-value=0.0004 Score=57.88 Aligned_cols=99 Identities=3% Similarity=-0.080 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCC--ChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC-HHHHHH
Q 042154 108 FENARKVFDEMPGRNCEQTVLSFNALLGACVNSK--KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS-LDSANT 184 (377)
Q Consensus 108 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~ 184 (377)
+++++.+++.+.... |-+..+|+.-.-.+...+ ++++++.+++++.+. -+-+..+|+.-...+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 456666666666543 345666666555555555 366677777666653 12344555555555556665 466666
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHc
Q 042154 185 LLYEMEKKGIRLDLITFNTLLLGFYS 210 (377)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (377)
.++.+.+..+. |...|+.....+.+
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 66666665443 55555555544443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=2.5e-06 Score=75.85 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042154 207 GFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEE 286 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 286 (377)
.+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555432 1234445555555555555555555555555431 1233444444444444555555
Q ss_pred HHHHHH
Q 042154 287 AKRWYN 292 (377)
Q Consensus 287 a~~~~~ 292 (377)
|.+.++
T Consensus 93 A~~~~~ 98 (477)
T 1wao_1 93 ALRDYE 98 (477)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.29 E-value=1.6e-05 Score=70.37 Aligned_cols=88 Identities=8% Similarity=0.064 Sum_probs=40.1
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042154 199 ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGF 278 (377)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 278 (377)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554433 2234444445555555555555555555554431 11223444444444
Q ss_pred HhcCCHHHHH
Q 042154 279 VNEGNLEEAK 288 (377)
Q Consensus 279 ~~~~~~~~a~ 288 (377)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.29 E-value=7.3e-06 Score=58.36 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=44.3
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccch---hhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc--cchhHHHHH
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNT---GIYTGTVQRLANAKRFRWIEEILEHQKQYKDISK--EGFTARLIA 100 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 100 (377)
.+...+...|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|+..++++....+... ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34444555556666666655555432 2222 3444555555555555555555555554432221 111223445
Q ss_pred HHHccCCHHHHHHHHHhcCC
Q 042154 101 LYGKAAMFENARKVFDEMPG 120 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~ 120 (377)
++...|++++|...|+++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=1.6e-07 Score=83.57 Aligned_cols=125 Identities=9% Similarity=0.021 Sum_probs=96.8
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALY 102 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (377)
.+..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|++.++++.+..+. +...+..+..+|
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 84 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 84 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34455567788999999999999998765 567889999999999999999999999999887543 344455689999
Q ss_pred HccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHH--HHhCCChhHHHHHHH
Q 042154 103 GKAAMFENARKVFDEMPGRNCEQTVLSFNALLGA--CVNSKKFDEVDGLFK 151 (377)
Q Consensus 103 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 151 (377)
...|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999987754 2344556555555 888899999999998
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=3.7e-05 Score=54.57 Aligned_cols=60 Identities=10% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGIRLD---LITFNTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
+..+..++...|++++|...++.+.+.... + ...+..+..++...|++++|...|+++.+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444433211 1 23333344444444444444444444443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=8.9e-07 Score=62.21 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=33.2
Q ss_pred ccHHHHHHHHHhcccCCC-CccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHH
Q 042154 35 NNLKRLVDKFKKSSDLGR-FRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARK 113 (377)
Q Consensus 35 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 113 (377)
|++++|+..|++..+.+. -+.+...+..+..++...|++++|++.+++..+..+.. ...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444443210 02223344444444444444444444444444433222 1222234444444444444444
Q ss_pred HHHhcC
Q 042154 114 VFDEMP 119 (377)
Q Consensus 114 ~~~~~~ 119 (377)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.21 E-value=2.4e-05 Score=67.08 Aligned_cols=89 Identities=9% Similarity=-0.122 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 042154 267 DVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR 344 (377)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (377)
+...|..+..+|.+.|++++|++.++ .....| +...|..+..+|...|++++|++.|+++.+.... +...+..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34677888888889999999999998 444445 5678888888999999999999999999886543 66677778888
Q ss_pred HHhcCCHHHHHH
Q 042154 345 LAKELRVEEAKE 356 (377)
Q Consensus 345 ~~~~g~~~~A~~ 356 (377)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=2.8e-05 Score=66.61 Aligned_cols=120 Identities=12% Similarity=0.022 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKK---------------GIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNV 229 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 229 (377)
.+..+...+.+.|++++|++.|+++.+. -.+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3556666777777777777777776651 001123344445555555555555555555555433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042154 230 RPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEE 286 (377)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 286 (377)
+.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 1234444445555555555555555555544431 1133334444444444443333
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.18 E-value=4.4e-06 Score=58.59 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=36.4
Q ss_pred CChhHHHHHHHhchhhcCC-Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHH
Q 042154 141 KKFDEVDGLFKDLPHKLGI-EP-DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAE 218 (377)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 218 (377)
|++++|+..|++..+. +. .| +...+..+..++...|++++|+..|+++.+.... +...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555544421 10 12 2234444444555555555555555555444222 3444444444555555555555
Q ss_pred HHHHHHHh
Q 042154 219 KIWETMVN 226 (377)
Q Consensus 219 ~~~~~~~~ 226 (377)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=1.5e-05 Score=58.30 Aligned_cols=63 Identities=11% Similarity=-0.122 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCC-ChhhH----HHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSE-----RCLV-DQAPL----QLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|.+.|+++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5555555666666666666666666553 0122 23345 55666666666666666666666543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=8.3e-06 Score=60.90 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=56.8
Q ss_pred chHHHHHHHHhhhcccHHHHHHHHHhcccC--------CC--------CccchhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 042154 21 PKFIGSVIRGIYKENNLKRLVDKFKKSSDL--------GR--------FRTNTGIYTGTVQRLANAKRFRWIEEILEHQK 84 (377)
Q Consensus 21 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 84 (377)
...+......+.+.|++++|+..|....+. .. .+.+...|..+..++...|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777778888889999999988887654 00 01122345555555555555555555555555
Q ss_pred hhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCC
Q 042154 85 QYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGR 121 (377)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 121 (377)
...+.....++ .+..+|...|++++|...|++..+.
T Consensus 91 ~~~p~~~~a~~-~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALF-RRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHH-HHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54332222222 3555555555555555555555443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.14 E-value=6.6e-06 Score=69.68 Aligned_cols=146 Identities=10% Similarity=0.044 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALY 102 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (377)
.+..+...+.+.|++++|+..|++..+.. |+... +...++.+++...+. ...+..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45555566666677777777776665432 22110 111222222222110 12444577777
Q ss_pred HccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC-HHHHHHHHHH-HHHcCCHH
Q 042154 103 GKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD-LVSYNTIIKA-FVDKGSLD 180 (377)
Q Consensus 103 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~~~~~ 180 (377)
.+.|++++|+..+++..+.. +.+..+|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887776654 345667777777888888888888888777532 343 3344444433 23345666
Q ss_pred HHHHHHHHHHHC
Q 042154 181 SANTLLYEMEKK 192 (377)
Q Consensus 181 ~a~~~~~~~~~~ 192 (377)
.+...|..|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 777777777654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=3.7e-05 Score=57.27 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHhch
Q 042154 127 VLSFNALLGACVNSKKFDEVDGLFKDLP 154 (377)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (377)
...+......+.+.|++++|+..|.+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al 38 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDAL 38 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555566666666666665554
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=7.8e-06 Score=69.24 Aligned_cols=150 Identities=10% Similarity=-0.053 Sum_probs=73.7
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042154 197 DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIK 276 (377)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 276 (377)
....+..+...+.+.|++++|...|++..... |+... +...++.+++...+ . ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHH
Confidence 35567777888888999999999999887753 44331 11223333332221 1 125666777
Q ss_pred HHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCHHH
Q 042154 277 GFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDR-LAKELRVEE 353 (377)
Q Consensus 277 ~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 353 (377)
+|.+.|++++|+..++ .....| +...|..+..+|...|++++|...|+++++.... +...+..+... ....+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888887777 222233 5667777777788888888888888777664322 34444444444 233455667
Q ss_pred HHHHHHhhccCCc
Q 042154 354 AKELVELGKTNSY 366 (377)
Q Consensus 354 A~~~~~~~~~~~~ 366 (377)
+.+.+++|.+..+
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7777777765543
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=1.2e-05 Score=71.22 Aligned_cols=121 Identities=7% Similarity=-0.064 Sum_probs=74.9
Q ss_pred HHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHH--------hcC-CCCCH-HHHHH
Q 042154 243 LAIEKQTKKALELVGEMRSK-----EI-NPD-VFTFYALIKGFVNEGNLEEAKRWYN--------KSG-CGMNK-AIFKL 305 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~-----g~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~-~~~~~-~~~~~ 305 (377)
+...|++++|+.++++.++. |. .|+ ..+++.|..+|...|++++|..+++ ..| ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777666542 11 122 3466777777777777777777766 112 12222 35677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 306 LVPFVCEKGDLDFAFNLCKRTFSE---RCLVD----QAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 306 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
|...|...|++++|+.+++++++. -..|+ ..+...+..++...|++++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888777776643 11122 12345566677777778888877777655
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00055 Score=62.09 Aligned_cols=137 Identities=11% Similarity=0.001 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 042154 214 FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEK--QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG-NLEEAKRW 290 (377)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~ 290 (377)
++++++.++.+.+.. +-+..+|+.-...+.+.+ +++++++.++++.+.. +-+...|+.-..++.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 455555555555443 234445555555555555 4455555555555542 124444544444444555 55555555
Q ss_pred HH-hcCCCC-CHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 042154 291 YN-KSGCGM-NKAIFKLLVPFVCEK--------------GDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEE 353 (377)
Q Consensus 291 ~~-~~~~~~-~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (377)
++ .....| |...|+.....+.+. +.++++++.+++++...+. +...|..+...+.+.|+.++
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 55 222222 444555444443332 4578899999998887655 77788888888877777444
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.07 E-value=8.4e-05 Score=53.68 Aligned_cols=109 Identities=10% Similarity=-0.036 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 042154 213 RFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVN----EGNLEEAK 288 (377)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~ 288 (377)
++++|.+.|++..+.| .|+.. +...|...+.+++|+++|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555555555555554 12222 4444444445555555555555543 33444444444444 44555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 042154 289 RWYNKSGCGMNKAIFKLLVPFVCE----KGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 329 (377)
++++..-..-++..+..|...|.. .+++++|.+.|++..+.
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555510001233444444444444 44555555555554444
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.02 E-value=0.00013 Score=53.42 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CC
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGIRL------D-----LITFNTLLLGFYSNGRFADAEKIWETMVNM-----NV 229 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 229 (377)
+......+.+.|++++|+..|++..+..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444455556666666666666665432210 1 125666666666666666666666666653 01
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 230 RPN-VRSY----NARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 230 ~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
.|+ ...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 233 3445 5666666666666666666666654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.98 E-value=7.5e-05 Score=66.15 Aligned_cols=125 Identities=10% Similarity=-0.015 Sum_probs=80.5
Q ss_pred HHhCCChhHHHHHHHhchhhc----C-CCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CCCHHhHHH
Q 042154 137 CVNSKKFDEVDGLFKDLPHKL----G-IEPD-LVSYNTIIKAFVDKGSLDSANTLLYEMEKK-----GI--RLDLITFNT 203 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ 203 (377)
+...|++++|+.++++..+.. | -.|+ ..+++.+..+|...|++++|+.++++..+. |. +....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788888888777665431 1 1122 346777888888888888888887776531 21 123456777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 204 LLLGFYSNGRFADAEKIWETMVN-----MNV-RPN-VRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
|...|...|++++|+.++++..+ .|. .|+ ..+.+.+..++...+.+++|+.+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776653 231 122 23345555666677777888877777765
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.00032 Score=63.59 Aligned_cols=171 Identities=7% Similarity=-0.070 Sum_probs=112.1
Q ss_pred cHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCC----------hHHHHHHHHHhhhhcCCCccchhHHHHHHHHcc
Q 042154 36 NLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKR----------FRWIEEILEHQKQYKDISKEGFTARLIALYGKA 105 (377)
Q Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (377)
.-++|++.++.+...+ |.+..+|+.--.++...|+ ++++++.++.+.+..+.....++ .-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~-hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH-HRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHc
Confidence 3457788888887765 5556667766666666666 78888888888776544433333 456666677
Q ss_pred C--CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCC-ChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHc------
Q 042154 106 A--MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSK-KFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDK------ 176 (377)
Q Consensus 106 ~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 176 (377)
+ +++++++.++++.+.. +-+..+|+.....+.+.| .++++++.++++.+. .+-+..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccccc
Confidence 7 6688888888887765 446777777777777777 777888888777653 233455666666655553
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC
Q 042154 177 --------GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR 213 (377)
Q Consensus 177 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (377)
+.++++++.++++....+. +...|.-+-..+.+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3456777777776665332 55666666666655555
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.5e-06 Score=58.19 Aligned_cols=63 Identities=10% Similarity=0.108 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 86 (377)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++....
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344455555555555555555555554433 334444555555555555555555555554443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.2e-05 Score=55.52 Aligned_cols=92 Identities=11% Similarity=0.001 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------hhhHH
Q 042154 268 VFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVD------QAPLQ 339 (377)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~ 339 (377)
...+..+...+...|++++|.+.++ .... +.+...+..+..++...|++++|++.++++++.... + ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 3455566666666677777776666 1112 234556666777777777777777777777664322 2 33444
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 042154 340 LVVDRLAKELRVEEAKELVEL 360 (377)
Q Consensus 340 ~l~~~~~~~g~~~~A~~~~~~ 360 (377)
.+..++...|+.+.|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 455555555555555444433
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=0.00066 Score=48.90 Aligned_cols=89 Identities=8% Similarity=-0.105 Sum_probs=42.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042154 169 IIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYS----NGRFADAEKIWETMVNMNVRPNVRSYNARLDGLA 244 (377)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (377)
+...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3344444444555555555555442 33444444444444 445555555555555443 3344444444444
Q ss_pred h----cCCHHHHHHHHHHHHhCC
Q 042154 245 I----EKQTKKALELVGEMRSKE 263 (377)
Q Consensus 245 ~----~~~~~~a~~~~~~~~~~g 263 (377)
. .++.++|..+|++..+.|
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC
Confidence 4 445555555555554443
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.85 E-value=0.0001 Score=49.80 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 267 DVFTFYALIKGFVNEGNLEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
+...+..+..+|...|++++|...++ .....| +...|..+..+|...|++++|++.|++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666666667777777777666 222222 3455666666677777777777777666553
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.76 E-value=7.8e-05 Score=50.37 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=53.8
Q ss_pred CCCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhh
Q 042154 18 ATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQY 86 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 86 (377)
|.++..+..+...+...|++++|+..|+++.+.. |.+...|..+..++...|++++|++.+++....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567788888888888888888888888888765 556677888888888888888888888877654
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=3e-05 Score=56.61 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=65.0
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCCh----------HHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF----------RWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
..+.+.+++|+..++...+.. |.+...|..+..++...+++ ++|+..|++..+..+.....++ .+..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~-~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW-CIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH-HHHH
Confidence 345677889999999888776 66788888888888887765 4777777777777655444444 4777
Q ss_pred HHHccC-----------CHHHHHHHHHhcCCCCCCccHHHH
Q 042154 101 LYGKAA-----------MFENARKVFDEMPGRNCEQTVLSF 130 (377)
Q Consensus 101 ~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~ 130 (377)
+|...| ++++|.+.|++..+.. |+...|
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y 127 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHY 127 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHH
Confidence 776654 5666666666655543 444333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.74 E-value=0.00053 Score=44.86 Aligned_cols=61 Identities=13% Similarity=0.260 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (377)
.+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333344444444444444444444443321 1333444444444444444444444444443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.00041 Score=45.45 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042154 269 FTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLA 346 (377)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (377)
..+..+...+...|++++|...++ .... +.+...+..+..++...|++++|.+.+++..+..+. +...+..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 345555566666666666666666 1111 224555666666777777777777777777665332 4455555555554
Q ss_pred hc
Q 042154 347 KE 348 (377)
Q Consensus 347 ~~ 348 (377)
+.
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.72 E-value=0.00037 Score=48.28 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-hcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 251 KALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN-KSGC-GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 251 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
.|+..|++..+.. +.+...+..+...+...|++++|...++ .... +.+...|..+..+|...|++++|...|++.++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5777888887753 3467788889999999999999999999 2222 33567888889999999999999999999887
Q ss_pred c
Q 042154 329 E 329 (377)
Q Consensus 329 ~ 329 (377)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 5
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.66 E-value=0.0007 Score=46.79 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (377)
.+..+...+...|++++|+..+++..+... .+...+..+..+|...|++++|...|++..
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444443321 133344444444444444444444444433
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.54 E-value=0.0011 Score=55.62 Aligned_cols=74 Identities=15% Similarity=0.034 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 042154 124 EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFN 202 (377)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (377)
+.++.+|..+...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.++++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 456777777777777778888888888888765 367777777778888888888888888888776 34555554
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.49 E-value=0.0003 Score=51.32 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=14.7
Q ss_pred CChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 141 KKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
+.+++|.+.+++..+. -+.+...|..+..++...++
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcc
Confidence 3344444444444332 01233344444444444433
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.32 E-value=0.002 Score=42.59 Aligned_cols=63 Identities=10% Similarity=-0.069 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHH-hcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 267 DVFTFYALIKGFVNEGN---LEEAKRWYN-KSGCGM-NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 267 ~~~~~~~l~~~~~~~~~---~~~a~~~~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
+...+..+..++...++ .++|..+++ .....| ++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433322 455555555 222222 3344444445555555555555555555554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.00073 Score=45.18 Aligned_cols=60 Identities=3% Similarity=0.047 Sum_probs=41.3
Q ss_pred HHHHhhhcccHHHHHHHHHhcccCCCCccchh-hHHHHHHHHHhcCChHHHHHHHHHhhhhcC
Q 042154 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTG-IYTGTVQRLANAKRFRWIEEILEHQKQYKD 88 (377)
Q Consensus 27 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 88 (377)
....+.+.|++++|+..|+.+.+.. +.+.. .+..+..++...|++++|++.+++..+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3455666777777777777776654 44555 677777777777777777777777766543
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.0098 Score=56.63 Aligned_cols=102 Identities=10% Similarity=0.101 Sum_probs=53.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHH
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVD 175 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (377)
..++..+.+.|..++|.++.+. |. .-.......|+++.|.++.+.+. +...|..+...+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~~-------~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDES-------AEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhhC-------cHhHHHHHHHHHHH
Confidence 3455566666666666654421 10 11223445666666666654442 44566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042154 176 KGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMV 225 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (377)
.++++.|++.|..+.. |..+...+...|+.+...++-+...
T Consensus 694 ~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp TTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666665532 2334444444555554444433333
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.22 E-value=0.00074 Score=58.81 Aligned_cols=61 Identities=3% Similarity=-0.087 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-----CC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSE-----RC-LVDQ-APLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
+++.|..+|...|++++|+.+++++++. |. .|+. .+++.|...|...|++++|..+++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3445555555555555555555554432 11 1111 134455555555555555555555543
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.22 E-value=0.014 Score=55.51 Aligned_cols=191 Identities=12% Similarity=0.052 Sum_probs=100.8
Q ss_pred HHHHccCCHHHHHH-HHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 100 ALYGKAAMFENARK-VFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 100 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.-.. -.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCC
Confidence 34445677777766 443322 022236666777777777777765532211 1233456778
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....+-+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 88777775333 3566777788888888888888777776542 22233334445555544444333
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh---
Q 042154 259 MRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ--- 335 (377)
Q Consensus 259 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 335 (377)
....|. ++....+|.+.|++++|. +.|.+.+++++|..+-+. ..|..
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~-------------------~~~~~~~~~~~A~~lA~~-----~~~~~~~i 782 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAK-------------------DLLIKSQRFSEAAFLGST-----YGLGDNEV 782 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHH-------------------HHHHHTTCHHHHHHHHHH-----TTCCHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHH-------------------HHHHHcCChHHHHHHHHH-----hCCChHHH
Confidence 333221 122222333344444443 345566666666665443 22333
Q ss_pred -hhHHHHHHHHHhcCCHHHH
Q 042154 336 -APLQLVVDRLAKELRVEEA 354 (377)
Q Consensus 336 -~~~~~l~~~~~~~g~~~~A 354 (377)
.........+...|+.+.|
T Consensus 783 ~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 783 NDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHhccchhHH
Confidence 3444444555666665443
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.20 E-value=0.019 Score=40.03 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042154 208 FYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEA 287 (377)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 287 (377)
+.-.|..++..++..+.... .+..-||-+|--....-+-+-..+.++.+-.. .|.. ..|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHH
Confidence 34467778888888777764 35566666666666666666666666655432 2211 22333333
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCce
Q 042154 288 KRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYC 367 (377)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 367 (377)
...+-..+ .+...+...+..+...|+-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.++++++.++|..
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33333222 3445666778888999999999999988655 45678888889999999999999999999999998864
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.13 E-value=0.0019 Score=56.24 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHH--------hcC-CCCCH-HHH
Q 042154 241 DGLAIEKQTKKALELVGEMRSKE---INPD----VFTFYALIKGFVNEGNLEEAKRWYN--------KSG-CGMNK-AIF 303 (377)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~g---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~-~~~~~-~~~ 303 (377)
..+.+.|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|..+++ ..| ..|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666665431 1111 2355666666666666666666655 111 12222 245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 304 KLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 304 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
+.|...|...|++++|+.+++++++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55666666666666666666666554
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.0071 Score=50.77 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=44.9
Q ss_pred CCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042154 196 LDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFY 272 (377)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 272 (377)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 355566665555555566777777776666654 56555656666666667777777666666653 45555543
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.03 E-value=0.004 Score=41.07 Aligned_cols=69 Identities=10% Similarity=0.011 Sum_probs=44.3
Q ss_pred CCCchHHHHHHHHhhhccc---HHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcC
Q 042154 18 ATGPKFIGSVIRGIYKENN---LKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKD 88 (377)
Q Consensus 18 ~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 88 (377)
|.++..+..+..++...++ .++|..+|++..+.+ |.+......+...+...|++++|+..|+++....+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5566666666666654433 567777777776655 55566666666666777777777777777666543
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.97 E-value=0.0022 Score=42.75 Aligned_cols=83 Identities=18% Similarity=0.099 Sum_probs=60.7
Q ss_pred HHHHHHhcCCHHHHHHHHH-hcCCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 042154 274 LIKGFVNEGNLEEAKRWYN-KSGCGM-NKA-IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELR 350 (377)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~-~~~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (377)
....+...|++++|.+.++ .....| +.. .+..+..+|...|++++|.+.|++.++.... +...+.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------HH
Confidence 4567788999999999999 222334 566 8888899999999999999999999986543 3333311 56
Q ss_pred HHHHHHHHHhhccCC
Q 042154 351 VEEAKELVELGKTNS 365 (377)
Q Consensus 351 ~~~A~~~~~~~~~~~ 365 (377)
+.++...+++..+..
T Consensus 77 ~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQ 91 (99)
T ss_dssp HHHHHHHHCCTTHHH
T ss_pred HHHHHHHHHHHhccC
Confidence 677777777665443
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.003 Score=55.05 Aligned_cols=88 Identities=9% Similarity=0.069 Sum_probs=56.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 042154 205 LLGFYSNGRFADAEKIWETMVNMN---VRPN----VRSYNARLDGLAIEKQTKKALELVGEMRSK-----E-INPD-VFT 270 (377)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----g-~~p~-~~~ 270 (377)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|+.++++.++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556677777777777776431 1121 345677777777777787777777766532 2 1233 245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 042154 271 FYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
++.|...|...|++++|..+++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 6777777777777777777766
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.84 E-value=0.064 Score=37.44 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=92.8
Q ss_pred HHHHHHHH--hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 23 FIGSVIRG--IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 23 ~~~~li~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
+...|+.+ +.-.|..++..++..+..... +..-|+.+|--....-+-+-..+.++.+-+.-..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------- 71 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------- 71 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG-----------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCc-----------
Confidence 44445544 334677777888877776432 4445666666666666666666666665443211
Q ss_pred HHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHH
Q 042154 101 LYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLD 180 (377)
Q Consensus 101 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 180 (377)
..+|++......+-.+-. +.......++.+..+|+-++..+++..+.. +.+|++...-.+..+|.+.|+..
T Consensus 72 --s~C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 72 --DKCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp --GGCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHH
T ss_pred --HhhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchh
Confidence 123344444444433322 345556667777788888888888877433 44677777777888888888888
Q ss_pred HHHHHHHHHHHCCCC
Q 042154 181 SANTLLYEMEKKGIR 195 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~ 195 (377)
++.+++.++-+.|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 888888888877754
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.80 E-value=1e-05 Score=69.29 Aligned_cols=245 Identities=12% Similarity=0.170 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
..+..|..|..+..+.+...+|++.|-+. .|+..|..+|....+.|++++.++++....+.. .+..+-+.|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteL 122 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 122 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHH
Confidence 46778999999999999988888876433 245568899999999999999999998777653 333445569
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhc-------------------CC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL-------------------GI 159 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~ 159 (377)
+-+|++.++..+-++. +. .|+..-...+.+-|...|.++.|.-+|..+..-. .-
T Consensus 123 i~ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999986654322 22 2666666777888888888888887776653210 00
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042154 160 EPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNAR 239 (377)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (377)
.-++.||..+-.+|...+++..|.-.--.+.-.. + -...++..|-..|.+++.+.+++.-.... ......|+-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 1234456666666666666555443333332111 1 12234455556666666666666555321 2344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 240 LDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
.-.|++- ++++..+.++....+ + | .-.++++|.+..-|.++.-++.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sr-i--N---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSR-V--N---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSS-S--C---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHh-c--c---HHHHHHHHHHHhhHHHHHHHHh
Confidence 5555443 344444444433322 1 0 0123455555555555554444
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.79 E-value=0.0055 Score=53.34 Aligned_cols=63 Identities=5% Similarity=0.091 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHhchhh----cC-CCcCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 128 LSFNALLGACVNSKKFDEVDGLFKDLPHK----LG-IEPDL-VSYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
.+++.+...|...|++++|+.++++...- .| -.|++ .+++.+...|...|++++|+.+++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44555555555555555555555544321 11 11222 245555555555555555555555443
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.68 E-value=0.19 Score=40.62 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHhcCCCCCCccHHHHHHHHHH-HHhC--CC------hhHHHHHHHhchhhcCCCcC---HHHHHHHHHHH
Q 042154 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGA-CVNS--KK------FDEVDGLFKDLPHKLGIEPD---LVSYNTIIKAF 173 (377)
Q Consensus 106 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~------~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~ 173 (377)
++..+-.+.+.++.... +....|..++.+ +... |+ ...|...+++..+ +.|+ ...|..+...|
T Consensus 135 ~~~~~~~~~l~~~~~~d--ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVD--VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp SCHHHHHHHHTTCCGGG--HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCccc--cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHH
Confidence 33334444444443322 334455555443 3332 33 3456666666653 3555 45788888888
Q ss_pred HHc-----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCC--CCHHHHH
Q 042154 174 VDK-----GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSN-GRFADAEKIWETMVNMNVR--PNVRSYN 237 (377)
Q Consensus 174 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~ 237 (377)
.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+.+.+.+++.+..... |+....+
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 884 88888888888888865433477777788888874 8888888888888887655 5543333
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.12 Score=38.31 Aligned_cols=98 Identities=8% Similarity=0.221 Sum_probs=45.4
Q ss_pred HHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHH
Q 042154 102 YGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDS 181 (377)
Q Consensus 102 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (377)
....|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 34455555555554443 1344555555555555555555555554421 3333334444455544
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH
Q 042154 182 ANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIW 221 (377)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (377)
..++-+.....| -++.....+.-.|+++++.++|
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 444443333332 1233333344445555555554
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.55 E-value=0.012 Score=39.65 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH---h---c---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 042154 266 PDVFTFYALIKGFVNEGNLEEAKRWYN---K---S---GCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSER 330 (377)
Q Consensus 266 p~~~~~~~l~~~~~~~~~~~~a~~~~~---~---~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 330 (377)
.+..-+..|...+...|++..|...++ . . .-.+....+..+..++.+.|+++.|...++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 355666788888999999999999998 1 1 113456678889999999999999999999998853
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.48 E-value=0.018 Score=41.52 Aligned_cols=79 Identities=11% Similarity=-0.024 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 042154 181 SANTLLYEMEKKGIRLDLITFNTLLLGFYSNG---RFADAEKIWETMVNMNVRP--NVRSYNARLDGLAIEKQTKKALEL 255 (377)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 255 (377)
.+.+.|.+..+.+. ++..+...+..++++.+ +.++++.+++...+.+ .| ....+-.+.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33444444444333 35555555555555555 3445555555555443 12 122333344445555666666665
Q ss_pred HHHHHh
Q 042154 256 VGEMRS 261 (377)
Q Consensus 256 ~~~~~~ 261 (377)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555555
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.48 E-value=0.035 Score=37.36 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHhchhhcC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 042154 128 LSFNALLGACVNSKKFDEVDGLFKDLPHKLG-----IEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
..+..+...+.+.++++.|..+|+...+... -.+....+..+..++.+.|+++.|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3334444445555555555555544433210 011223444444444444444444444444443
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.23 E-value=0.059 Score=38.42 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHHHhCCCh------hHHHHHHHhchhhcCCCcCHH-HHHHHHH------HHHHcCCHHHHHHHHHHHHHC
Q 042154 126 TVLSFNALLGACVNSKKF------DEVDGLFKDLPHKLGIEPDLV-SYNTIIK------AFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 192 (377)
|..+|-..+...-+.|+. ++..++|++... .++|+.. .|...+. .+...+|+++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 556666666666666666 666677776654 3445421 1111111 112336777777777777654
Q ss_pred CCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 042154 193 GIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRP 231 (377)
Q Consensus 193 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (377)
.-. =...|......=.+.|++.+|.+++...+..+.+|
T Consensus 90 hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 25556666666666777777777777777666443
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.20 E-value=0.00017 Score=62.02 Aligned_cols=216 Identities=15% Similarity=0.186 Sum_probs=145.4
Q ss_pred CCchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHH
Q 042154 19 TGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARL 98 (377)
Q Consensus 19 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 98 (377)
-|+..|..+|.+..+.|.+++-+..+...++.. -++..=+.|+-+|++.++..+..+++. .|+..-...+
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~V 150 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 150 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHH
Confidence 578899999999999999999999988776543 233344589999999999877665542 2333333457
Q ss_pred HHHHHccCCHHHHHHHHHhcCCCC--------------------CCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcC
Q 042154 99 IALYGKAAMFENARKVFDEMPGRN--------------------CEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLG 158 (377)
Q Consensus 99 ~~~~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (377)
.+-|...|.++.|.-+|..+.... -.-++.+|..+-.+|...+.+.-|.-.--.+.-
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv--- 227 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--- 227 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---
Confidence 777777777777777766553321 023677899999999999988776544333321
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCCCCHHHHH
Q 042154 159 IEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMV-NMNVRPNVRSYN 237 (377)
Q Consensus 159 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 237 (377)
.|| -...++..|-..|-+++.+.+++..... -......|+-|.-.|++- ++++..+-++..- +.++ |
T Consensus 228 -had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi-p------ 295 (624)
T 3lvg_A 228 -HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI-P------ 295 (624)
T ss_dssp -CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC-T------
T ss_pred -cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH-H------
Confidence 122 1334567788999999999999988743 345788899999999875 4554444333222 2222 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 042154 238 ARLDGLAIEKQTKKALELVGEM 259 (377)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~ 259 (377)
-++++|.+..-|.++.-+|..-
T Consensus 296 KviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 296 KVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp TTHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhcc
Confidence 2566776667777666666543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.27 Score=36.44 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=44.2
Q ss_pred HHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH
Q 042154 137 CVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD 216 (377)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (377)
..+.|+++.|.++.+.+ .+...|..+.......|+++-|++.|..... +..+.-.|...|+.++
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34455555555554433 1334455555555555555555555544432 2233333444444444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 217 AEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
..++-+.....| -++.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444433333332 122233333444555555555433
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.021 Score=41.20 Aligned_cols=84 Identities=7% Similarity=-0.012 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH---hcCCCC--CHHHHHHHHHHHHhcCChHHH
Q 042154 248 QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG---NLEEAKRWYN---KSGCGM--NKAIFKLLVPFVCEKGDLDFA 319 (377)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~a 319 (377)
....+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+++ ... .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777777654 67777778888888888 6668998888 322 24 234555566688999999999
Q ss_pred HHHHHHHHhcCCCCCh
Q 042154 320 FNLCKRTFSERCLVDQ 335 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~ 335 (377)
.+.++.+++. .|+.
T Consensus 91 ~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhc--CCCC
Confidence 9999999985 4443
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.79 Score=40.05 Aligned_cols=189 Identities=10% Similarity=0.085 Sum_probs=96.4
Q ss_pred cCChHHHHHHHHHhhhhc-----CCCccchhHHHHHHHHccCCHHHHHHHHHhcCC-CCCCccHHHHHHHHHHH----Hh
Q 042154 70 AKRFRWIEEILEHQKQYK-----DISKEGFTARLIALYGKAAMFENARKVFDEMPG-RNCEQTVLSFNALLGAC----VN 139 (377)
Q Consensus 70 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~----~~ 139 (377)
.|+++.|++.+-.+.+.. ..........++..|...++++...+.+..+.+ +|..+.. ...+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 367788877765555432 222334455678888888888888777666544 3422222 22333322 22
Q ss_pred CCChh--HHHHHHHhchhhcCCC--c---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHhHHHHHHH
Q 042154 140 SKKFD--EVDGLFKDLPHKLGIE--P---DLVSYNTIIKAFVDKGSLDSANTLLYEMEKK--GIRLD---LITFNTLLLG 207 (377)
Q Consensus 140 ~~~~~--~a~~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~ 207 (377)
....+ .-..+.+.......-+ . .......+...+...|++.+|.+++..+... |.... ...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222 2222332222110001 1 1112345566677777777777777776532 11111 2345555666
Q ss_pred HHcCCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042154 208 FYSNGRFADAEKIWETMVN----MNVRPN--VRSYNARLDGLAIEKQTKKALELVGEMR 260 (377)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (377)
|...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|...|.++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6677777777777766532 111122 1234455555666667777666666554
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.86 E-value=0.34 Score=39.11 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 042154 179 LDSANTLLYEMEKKGIR-LDLITFNTLLLGFYSN-----GRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIE-KQTKK 251 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 251 (377)
...|...+++..+.... .+...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45677777777765321 1245777788888874 88888888888888765211356666677777774 88888
Q ss_pred HHHHHHHHHhCCCC--CCHHHHH
Q 042154 252 ALELVGEMRSKEIN--PDVFTFY 272 (377)
Q Consensus 252 a~~~~~~~~~~g~~--p~~~~~~ 272 (377)
+.+.+++.++.... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888886544 5543333
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.36 E-value=0.21 Score=35.62 Aligned_cols=102 Identities=6% Similarity=-0.095 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCH-HhHHHHHHH------HHcCCCHHHHHHHHHHHHhCC
Q 042154 162 DLVSYNTIIKAFVDKGSL------DSANTLLYEMEKKGIRLDL-ITFNTLLLG------FYSNGRFADAEKIWETMVNMN 228 (377)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 228 (377)
|..+|-..+...-+.|++ +...++|+++... ++|+. ..|...+.. +...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666777 7777777777764 34432 111111111 122356666777776665432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 042154 229 VRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEIN 265 (377)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 265 (377)
-.- ...|.....--.+.|+..+|..++......+..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 122 455555555556666777777777666665433
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.27 Score=45.77 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=44.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhc
Q 042154 307 VPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 307 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 362 (377)
.+.|...|+++.|+++-++.+..-+. +..+|..|..+|...|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566788899999998888875332 57788899999999999999998888885
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.13 E-value=0.17 Score=35.11 Aligned_cols=81 Identities=14% Similarity=-0.029 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFAD---AEKIWETMVNMNVRP--NVRSYNARLDGLAIEKQTKKAL 253 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 253 (377)
...+.+-|......|. ++..+-..+..++.+..+... ++.+++.+...+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444333 455555555556665554443 555666555543 12 1122223444555666666666
Q ss_pred HHHHHHHh
Q 042154 254 ELVGEMRS 261 (377)
Q Consensus 254 ~~~~~~~~ 261 (377)
+.++.+++
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666665
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.99 E-value=2.6 Score=41.87 Aligned_cols=128 Identities=6% Similarity=0.075 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042154 199 ITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN----VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYAL 274 (377)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l 274 (377)
.-|..++..+-+.+.++.+.++-....+...+.+ ...|..+..++...|++++|...+-.+..... -...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 3466677777777777777776665554221111 12466777777777777777777766655432 23445555
Q ss_pred HHHHHhcCC------------HHHHHHHHH---h-c-CCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 042154 275 IKGFVNEGN------------LEEAKRWYN---K-S-GCGMNKAIFKLLVPFVCEKGDLDFAFNL-CKRTFS 328 (377)
Q Consensus 275 ~~~~~~~~~------------~~~a~~~~~---~-~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~ 328 (377)
+...+..|. .++..+++. . . .....+.-|..|-.-+...|++..|-.+ |+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 555554443 344444444 1 1 1111223455555566777887766544 555543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.84 E-value=0.49 Score=32.78 Aligned_cols=85 Identities=9% Similarity=0.052 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHH---HHHHHHhcCCCCCC-ccHHHHHHHHHHHHhCCChhHH
Q 042154 71 KRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFEN---ARKVFDEMPGRNCE-QTVLSFNALLGACVNSKKFDEV 146 (377)
Q Consensus 71 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 146 (377)
.....+.+-|......+.+.....| .+..++.+..+... ++.+++.+.+.+-+ -.......+.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F-~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQF-EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHH-HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344445555544444444444445 36667776665544 67777776665411 1333444555667777777777
Q ss_pred HHHHHhchhh
Q 042154 147 DGLFKDLPHK 156 (377)
Q Consensus 147 ~~~~~~~~~~ 156 (377)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.76 E-value=3 Score=39.86 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=8.8
Q ss_pred HHcCCCHHHHHHHHHHHHh
Q 042154 208 FYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~ 226 (377)
|+..|+.....+++..+..
T Consensus 570 yaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 570 YAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTSCCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHhcc
Confidence 4444454444445544443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.34 Score=45.12 Aligned_cols=128 Identities=11% Similarity=0.035 Sum_probs=80.9
Q ss_pred HHHHHHHhhhccc-HHHHHHHHHhcccCCCCccchhhHH-HHHHHHHhcCC-hHHHHHHHHHhhhh------cCCCc---
Q 042154 24 IGSVIRGIYKENN-LKRLVDKFKKSSDLGRFRTNTGIYT-GTVQRLANAKR-FRWIEEILEHQKQY------KDISK--- 91 (377)
Q Consensus 24 ~~~li~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~--- 91 (377)
...++..+...++ .+.|+.+|+++.+.. +.....+. .++..+...++ --+|.+++.+..+. ...+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3444555555666 688999999998764 32332222 23333333332 23455555444321 11111
Q ss_pred --------cchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhch
Q 042154 92 --------EGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLP 154 (377)
Q Consensus 92 --------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (377)
..+...-+..+...|+++-|+++-++....- |-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1123334556777899999999999987754 4468899999999999999999999999884
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.63 E-value=0.51 Score=30.95 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=48.7
Q ss_pred HHHHHHHccC-CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHH
Q 042154 97 RLIALYGKAA-MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIK 171 (377)
Q Consensus 97 ~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 171 (377)
.....+-+.. |.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+.|.. ..+|..+++
T Consensus 14 Ry~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 14 RWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 3444444555 566677777777777777888888888888888888888888887776553322 345655553
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.17 E-value=2.1 Score=35.46 Aligned_cols=191 Identities=12% Similarity=0.079 Sum_probs=99.5
Q ss_pred cccHHHHHHHHHhcccCCCC---ccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHH
Q 042154 34 ENNLKRLVDKFKKSSDLGRF---RTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFEN 110 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (377)
.+++++.+.-++.-.+.|.+ ---..+|.++..-|.+.+++++|++++-.-. ..+.+.|+...
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~s 73 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGS 73 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcch
Confidence 34555666666666555533 2234567788888899999999999875422 22223333333
Q ss_pred HHHH----HHhcCCCCCCccHHHHHHHHHHHHhCCC--------hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC
Q 042154 111 ARKV----FDEMPGRNCEQTVLSFNALLGACVNSKK--------FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS 178 (377)
Q Consensus 111 A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (377)
|-++ .+-+.+.++++|......++..+..-.. +++|+.+-.+. .. ...-|+.....+...|.+.++
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~-~~~Gdp~LH~~ig~~~~~e~~ 151 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GD-YPAGDPELHHVVGTLYVEEGE 151 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SS-CTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CC-CCCCCHHHHHHHHHHHHccCC
Confidence 2222 2333334445555555555554443332 11223222221 00 123466777788889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGE 258 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (377)
+.+|+..|- . |..+....|..++.-+...+...+ ++...-.+ +--|.-.++...|..+++.
T Consensus 152 ~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 152 FEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARA-VLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp HHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH-HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH-HHHHHHhCCHHHHHHHHHH
Confidence 998888772 2 333333556555544443332111 12222222 2334566777777776655
Q ss_pred HH
Q 042154 259 MR 260 (377)
Q Consensus 259 ~~ 260 (377)
..
T Consensus 213 f~ 214 (336)
T 3lpz_A 213 FT 214 (336)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.14 E-value=3.4 Score=39.57 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=97.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHH--HHHHHHHH
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSY--NTIIKAFV 174 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~ 174 (377)
.+...+...|+-+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+... ..|....- .++.-+|+
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAya 571 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhc
Confidence 34455667788777777777665432 122333333444455788888888888877542 22322222 23345677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHH
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT-KKAL 253 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~ 253 (377)
-.|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 8889888888999888752 2234433334445555677777788887776654 45555445555555555554 5688
Q ss_pred HHHHHHHhC
Q 042154 254 ELVGEMRSK 262 (377)
Q Consensus 254 ~~~~~~~~~ 262 (377)
+++..+...
T Consensus 650 d~L~~L~~D 658 (963)
T 4ady_A 650 DVLDPLTKD 658 (963)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHccC
Confidence 888888753
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.81 E-value=3.1 Score=36.28 Aligned_cols=258 Identities=12% Similarity=0.118 Sum_probs=150.7
Q ss_pred cccHHHHHHHHHhccc----CCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHH----HHHcc
Q 042154 34 ENNLKRLVDKFKKSSD----LGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIA----LYGKA 105 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 105 (377)
.|+++.|++.+..+.+ .+...........++..|...++++...+.+.-+.+.........- .++. .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~-~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ-YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcC
Confidence 4788999888765542 2224555677888999999999999998888766654333322222 2333 33233
Q ss_pred CC--HHHHHHHHHhcCC--CC-CCc---cHHHHHHHHHHHHhCCChhHHHHHHHhchhhc-CCCcC---HHHHHHHHHHH
Q 042154 106 AM--FENARKVFDEMPG--RN-CEQ---TVLSFNALLGACVNSKKFDEVDGLFKDLPHKL-GIEPD---LVSYNTIIKAF 173 (377)
Q Consensus 106 ~~--~~~A~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~---~~~~~~l~~~~ 173 (377)
.. .+.-..+.+.+.. .| +-. .......|...+...|++.+|.+++..+.... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2333344444322 11 111 22334567888999999999999999986442 22222 34677778999
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCCC--HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH----HH
Q 042154 174 VDKGSLDSANTLLYEMEK----KGIRLD--LITFNTLLLGFYSNGRFADAEKIWETMVNM-NVRPNVRSYNARL----DG 242 (377)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~----~~ 242 (377)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.+.... ....|...+...+ .+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999988742 222232 245666777778889999998888777532 1111222222111 11
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 042154 243 LAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNE--GNLEEAKRWYN 292 (377)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~ 292 (377)
..-.+....--.++........-++...|..++.+|... .+++...+.+.
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 111111111122222222211224566788888888764 46677776666
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.59 E-value=0.86 Score=31.69 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=53.2
Q ss_pred hhHHHHHHHHccC-CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHH
Q 042154 94 FTARLIALYGKAA-MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIK 171 (377)
Q Consensus 94 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 171 (377)
+-......+-+.+ |.-+..+-++.+...++.|++....+.+++|-+.+|+..|..+|+-++.+-| +....|..+++
T Consensus 54 FdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 54 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3333444455555 5666777778888888888888888888888888888888888888766533 33445666654
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.45 E-value=0.42 Score=40.92 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=34.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 042154 204 LLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS-----KEINPDVFT 270 (377)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~g~~p~~~~ 270 (377)
++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4444555555555555555555433 23455555555555555555555555555432 255555443
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.36 E-value=7 Score=38.88 Aligned_cols=146 Identities=10% Similarity=0.050 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCc--------------
Q 042154 60 YTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQ-------------- 125 (377)
Q Consensus 60 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------- 125 (377)
...++..+...+..+.+.++....... ....| .+..++...|++++|.+.|.+... |+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~----~~~~y-l~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSD----PIAVY-LKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCC----HHHHH-HHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCC----cHHHH-HHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 345666777788888777765543321 12234 577888888999999999887532 1100
Q ss_pred ---------cHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 042154 126 ---------TVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPD---LVSYNTIIKAFVDKGSLDSANTLLYEMEKKG 193 (377)
Q Consensus 126 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (377)
-..-|..++..+-+.+.++.+.++-....+..+..++ ...|..+.+.+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 1123455566666666666666555544433211111 1145566666666667666666665555432
Q ss_pred CCCCHHhHHHHHHHHHcCCC
Q 042154 194 IRLDLITFNTLLLGFYSNGR 213 (377)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~~~ 213 (377)
. -......++..+|..|.
T Consensus 969 ~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCC
T ss_pred H--HHHHHHHHHHHHHhCCC
Confidence 2 23344455555554443
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.04 E-value=3.8 Score=34.95 Aligned_cols=243 Identities=12% Similarity=0.091 Sum_probs=134.1
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCcc---chhhHHHHHHHHHhc-CChHHHHHHHHHhhhhcCCCccchh--
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRT---NTGIYTGTVQRLANA-KRFRWIEEILEHQKQYKDISKEGFT-- 95 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 95 (377)
.....|...|.+.|+.++..+++......-..-+ .......+++.+... +..+.-.++..+..+........+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999987753221112 234566778877764 3344444444443332211222222
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHhcCCC----CC-CccHHHHHHHHHHHHhCCChhHHHHHHHhchhhc-CCCcCHHHH
Q 042154 96 ---ARLIALYGKAAMFENARKVFDEMPGR----NC-EQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKL-GIEPDLVSY 166 (377)
Q Consensus 96 ---~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~ 166 (377)
..++..|...|++.+|.+++.++.+. +- .--...+..-+..|...+++.++...+....... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 35888999999999998888776541 10 1123456666778888999999888887764331 122333322
Q ss_pred HHH----HHHHH-HcCCHHHHHHHHHHHHHC-C-C-CC---CHHhHHHHHHHHHcCCCHHHHHHHHH-HH-HhCCCCCCH
Q 042154 167 NTI----IKAFV-DKGSLDSANTLLYEMEKK-G-I-RL---DLITFNTLLLGFYSNGRFADAEKIWE-TM-VNMNVRPNV 233 (377)
Q Consensus 167 ~~l----~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~ 233 (377)
..+ ...+. ..+++..|...|-+..+. . . .| +...|..+..... ++..+...++. .. ... ..|..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei 256 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccH
Confidence 221 23345 678899888877665421 1 0 01 1223333322222 22222222221 11 111 23555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042154 234 RSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVF 269 (377)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 269 (377)
..+..++.+| ..+++.+...+++..... +..|..
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~ 290 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVI 290 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChH
Confidence 6666666665 667777777777665432 444554
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.42 E-value=1.4 Score=28.86 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 251 KALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 251 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
+..+-++.+....+-|++....+.+.+|.+.+++..|.++++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE 69 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE 69 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344445555555555566555555666666666666666655
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.34 E-value=1.8 Score=30.59 Aligned_cols=69 Identities=7% Similarity=0.080 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHH-hcCCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 042154 265 NPDVFTFYALIKGFVNEGNL---EEAKRWYN-KSGCGM-NK-AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQ 335 (377)
Q Consensus 265 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~-~~~~~~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 335 (377)
.|+..+--.+..++.++.+. .+++.+++ .....| +. ...-.|.-++.+.|++++|.+..+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 56777666677777777654 46667777 111123 22 33344556888999999999999998884 4443
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.18 E-value=4.2 Score=33.36 Aligned_cols=136 Identities=11% Similarity=0.128 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHH---
Q 042154 37 LKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARK--- 113 (377)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--- 113 (377)
.++.+.-++.-.+.|.+---..+|.++..-|.+.+++++|++++..- ...+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHH
Confidence 44555555554444433333456777788888899999999987542 222333454444333
Q ss_pred -HHHhcCCCCCCccHHHHHHHHHHHHhCCChh-HHHHHHHhchhh---cC--CCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042154 114 -VFDEMPGRNCEQTVLSFNALLGACVNSKKFD-EVDGLFKDLPHK---LG--IEPDLVSYNTIIKAFVDKGSLDSANTLL 186 (377)
Q Consensus 114 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~---~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (377)
+.+-+.+.+.+++......++..+..-..-+ .=.++++++.+. .| ..-++.....+...|.+.+++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 2344444556667666666666554422111 112222222211 11 2236677888888888989888888776
Q ss_pred H
Q 042154 187 Y 187 (377)
Q Consensus 187 ~ 187 (377)
-
T Consensus 158 i 158 (312)
T 2wpv_A 158 M 158 (312)
T ss_dssp H
T ss_pred H
Confidence 4
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.97 E-value=1.2 Score=31.08 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHH---hcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 042154 264 INPDVFTFYALIKGFVNEGNL---EEAKRWYN---KSGCGM--NKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 264 ~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 329 (377)
-.|+..+--.+..++.+..+. .+++.+++ ..+ | ....+-.|.-++.+.|++++|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345666555566666666543 35666666 222 3 2233444555777778888888887777764
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.86 E-value=2.1 Score=29.81 Aligned_cols=67 Identities=9% Similarity=-0.090 Sum_probs=33.9
Q ss_pred CCCHHhHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042154 195 RLDLITFNTLLLGFYSNGR---FADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (377)
.|+..+--.+..++.++.+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444554445555555543 334555555555443111223333444555566666666666666665
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.64 E-value=0.94 Score=32.99 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=73.1
Q ss_pred hHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccc-------hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcC-CCc-c
Q 042154 22 KFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTN-------TGIYTGTVQRLANAKRFRWIEEILEHQKQYKD-ISK-E 92 (377)
Q Consensus 22 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~ 92 (377)
..+-.-+..+...+.++.|+-+...+.......|+ ..++..+.+++...+++..|...|++..+... .+. .
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555677888899999999888876533212222 23567788899999999999999998765421 111 1
Q ss_pred chhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 93 GFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
.....+. ....... ......+...-.-+..+|.+.+++++|+.+++.+..+
T Consensus 101 s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred Ccccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1110010 0000000 0011235555556788888888888888888887654
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.27 E-value=2.1 Score=36.53 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------hcCCCCCHHHHH
Q 042154 236 YNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN--------KSGCGMNKAIFK 304 (377)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~ 304 (377)
...++..+...|+++++...+..+... .+.+...+..+|.++...|+..+|++.|+ +.|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344566777888888888888877765 24567788888888888888888888877 568888776543
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.13 E-value=3.4 Score=31.18 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHH---hcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 042154 281 EGNLEEAKRWYN---KSGCG-MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333 (377)
Q Consensus 281 ~~~~~~a~~~~~---~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 333 (377)
.++...+..+|. ..++- --...|......+...|++.+|.++|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 343455555555 33332 344567777777777888888888888877776665
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.99 E-value=2.8 Score=29.18 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 251 KALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 251 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (377)
+..+-++.+....+-|++......+.+|.+.+++..|.++++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE 112 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE 112 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444555555555666666666666666666666666666
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.69 E-value=5.5 Score=29.01 Aligned_cols=122 Identities=8% Similarity=-0.036 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhhcC-CCcc-------chhHHHHHHHHccCCHHHHHHHHHhcCCCC--CCcc
Q 042154 57 TGIYTGTVQRLANAKRFRWIEEILEHQKQYKD-ISKE-------GFTARLIALYGKAAMFENARKVFDEMPGRN--CEQT 126 (377)
Q Consensus 57 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 126 (377)
..++-.-++.+...+.++.|+-+.+.+..... .++. .+...+.+++...+++..|...|++..+.. +.-+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555667778888889888888877655421 1221 133457888889999999999988853211 1101
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 127 VLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
..+...+- ...... .......+...-..+..+|.+.+++++|+.+++.+...
T Consensus 100 ~s~~~~~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 100 SKVRPSTG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CCcccccc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11111110 000000 00122345555566889999999999999999987544
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.57 E-value=14 Score=33.67 Aligned_cols=310 Identities=10% Similarity=0.006 Sum_probs=156.4
Q ss_pred hhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHH
Q 042154 31 IYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFEN 110 (377)
Q Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (377)
..+.|++..+..+...+.... +.|-. .|..+...+ ......++...+.+... .+....+-+..+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~p-L~~yl-~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYP-LYPYL-EYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTST-THHHH-HHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCC-cHHHH-HHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHH
Confidence 345688888888777664322 32222 343333322 12245555555544222 12223333456677777888887
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHH--HHHHHHHH
Q 042154 111 ARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLD--SANTLLYE 188 (377)
Q Consensus 111 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~ 188 (377)
....+.. . +.+...-.....+....|+..+|......+-..... .+..+..++..+.+.|... ....-++.
T Consensus 91 ~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~--~p~~c~~l~~~~~~~g~lt~~~~~~R~~~ 163 (618)
T 1qsa_A 91 LLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKLFSVWRASGKQDPLAYLERIRL 163 (618)
T ss_dssp HHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 7775554 1 345555556677788888877777766666543222 3334666777776655432 23333333
Q ss_pred HHHCCC-----------CCCHH-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHH
Q 042154 189 MEKKGI-----------RLDLI-TFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRS---YNARLDGLAIEKQTKKAL 253 (377)
Q Consensus 189 ~~~~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~ 253 (377)
+...|- .++.. ....++..+.+ ...+..... . +.++... +...+.-+.+ .+.+.|.
T Consensus 164 al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar-~d~~~A~ 234 (618)
T 1qsa_A 164 AMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAFASVAR-QDAENAR 234 (618)
T ss_dssp HHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHh---c--cCCChhhHHHHHHHHHHHHh-cCHHHHH
Confidence 333321 11111 11111111111 111111111 1 1122221 1112222333 3778888
Q ss_pred HHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 042154 254 ELVGEMRSKEINPDVFTF----YALIKGFVNEGNLEEAKRWYN-KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 254 ~~~~~~~~~g~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 328 (377)
..+....... ..+.... ..+.......+...++...+. ......+.....-.+....+.|+++.|...|+.|..
T Consensus 235 ~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~ 313 (618)
T 1qsa_A 235 LMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPM 313 (618)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred HHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccc
Confidence 8888876542 2233322 223323334452444555554 222234444444444555577999999999988765
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 329 ERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
.... ...-..-+..++...|+.++|..+|+.+.+
T Consensus 314 ~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 314 EAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3222 233334467788888999999998888765
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.23 E-value=5.3 Score=28.25 Aligned_cols=21 Identities=14% Similarity=-0.069 Sum_probs=9.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 042154 241 DGLAIEKQTKKALELVGEMRS 261 (377)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~ 261 (377)
-++.+.|++++|.++.+.+++
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444444444
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.93 E-value=10 Score=31.33 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHH----HHHHhCCCCCCHHHHHHHH
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIW----ETMVNMNVRPNVRSYNARL 240 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 240 (377)
+|.++..-|.+.+++++|++++..- ...+.+.|+...|-++- +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444455555555555544221 22344455554444433 4444556666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 042154 241 DGLAIEKQTK-KALELVGEMRS----KE--INPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEK 313 (377)
Q Consensus 241 ~~~~~~~~~~-~a~~~~~~~~~----~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (377)
..+.....-+ .=..+.+++.+ .| ..-|+..-..+...|.+.+++.+|...|- .+..+.+..+..++.-+...
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHh
Confidence 6555443211 11222222221 11 11244444555666666666666666553 22223334443333322222
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 314 GDLDFAFNLCKRTFSERCLVDQAPL-QLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 314 g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
+... +...| ...+--|.-.|+...|..+++...+
T Consensus 181 ~~~~----------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 181 DESH----------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp SCGG----------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCc----------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2111 11111 2233345667888888887666554
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.67 E-value=7.1 Score=33.83 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=56.9
Q ss_pred hhHHHHHHHHccCCHHHHHHHHHhcCCC--CCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHH--
Q 042154 94 FTARLIALYGKAAMFENARKVFDEMPGR--NCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTI-- 169 (377)
Q Consensus 94 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-- 169 (377)
....+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.+......-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3446777788888888888887776542 212335566667777777788877777777764332222232221111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHH
Q 042154 170 --IKAFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 170 --~~~~~~~~~~~~a~~~~~~~~~ 191 (377)
+..+...+++..|-+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1223345677777666665543
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=87.28 E-value=6.5 Score=28.21 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 333 (377)
.|......+...|++.+|.++|+..++.+-.|
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444444444555555555555544444333
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.65 E-value=2.5 Score=33.59 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhc
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYK 87 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 87 (377)
..+.+.|++++|+.....-.+.. |.|...-..++..+|-.|+++.|.+-++...+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44566777777777777766665 6677777777777777888887777777666654
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.38 E-value=8.8 Score=33.24 Aligned_cols=94 Identities=11% Similarity=-0.089 Sum_probs=63.9
Q ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHH--
Q 042154 199 ITFNTLLLGFYSNGRFADAEKIWETMVNM--NVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK---EINPDVFTF-- 271 (377)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~p~~~~~-- 271 (377)
.+...+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.+.... +..|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36677899999999999999999998853 22233456777888888999999999888887543 222332211
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 042154 272 YALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~ 292 (377)
..-...+...+++..|.+.|-
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~ 232 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLV 232 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHH
Confidence 111122345678888877766
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.16 E-value=4.4 Score=32.26 Aligned_cols=120 Identities=10% Similarity=0.066 Sum_probs=66.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCC--CCccHHHHHHHHHHHHhCCC
Q 042154 65 QRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRN--CEQTVLSFNALLGACVNSKK 142 (377)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 142 (377)
..+.+.|+++++++.+..-.+.. +.+...-..++..+|-.|+++.|.+-++...+.. ..|....|..+|++=....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~- 82 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK- 82 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH-
Confidence 34567788888888887766654 3344444468888899999999988877776543 1122334554544321110
Q ss_pred hhHHHHHHHhchhhcCC-CcCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC
Q 042154 143 FDEVDGLFKDLPHKLGI-EPDLVSYNTIIKAF--VDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 143 ~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 192 (377)
++|.- ....++ .....-...++.+. ...|+.++|..+-..+.+.
T Consensus 83 -----~vfaG-~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 83 -----DFAQG-AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHTTS-CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHcC-CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11110 011111 11222334444444 3458888888887777643
No 268
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=84.58 E-value=9.7 Score=27.73 Aligned_cols=56 Identities=5% Similarity=0.006 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 042154 281 EGNLEEAKRWYNKSGCG-MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA 336 (377)
Q Consensus 281 ~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 336 (377)
.+++.+....+...++- --...|......+...|++.+|.++|+..++.+-.|-..
T Consensus 76 ~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 76 CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 35555555555533333 344556677777777888888888888877776666433
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.09 E-value=21 Score=30.44 Aligned_cols=234 Identities=12% Similarity=0.013 Sum_probs=131.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCCC-CCCc---cHHHHHHHHHHHHhCC-ChhHHHHHHHhchhhcCCCcCHHHH----
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPGR-NCEQ---TVLSFNALLGACVNSK-KFDEVDGLFKDLPHKLGIEPDLVSY---- 166 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~---- 166 (377)
..|...|.+.|+.++..+++...... +..| .......++..+.... ..+.-.++..+..+... -+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~flr~~ 100 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 36899999999999999999887652 1112 2334566777777643 34444444444443211 111233
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHH
Q 042154 167 --NTIIKAFVDKGSLDSANTLLYEMEKKGIRLD-----LITFNTLLLGFYSNGRFADAEKIWETMVNM--NVRPNVRSYN 237 (377)
Q Consensus 167 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 237 (377)
..++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+...... .+.+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2567888999999999988888875311111 234555667788889999999888877532 2324443333
Q ss_pred HH----HHHHH-hcCCHHHHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH-h--cC-CCCCHH
Q 042154 238 AR----LDGLA-IEKQTKKALELVGEMRSK----EINP---DVFTFYALIKGFVNEGNLEEAKRWYN-K--SG-CGMNKA 301 (377)
Q Consensus 238 ~l----~~~~~-~~~~~~~a~~~~~~~~~~----g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~-~--~~-~~~~~~ 301 (377)
.+ ...+. ..+++.+|...|-+.... |. | +...|..|... . .++..+-..++. . .. ..|...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~-~~~~~~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDS-VKALTSLKYMLLCKI-M-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhccccccc-HHHHHHHHHHHHHHH-H-cCCHHHHHHHhccccccccCCccHH
Confidence 22 23345 678899988777665421 11 1 12233322222 2 233222233333 1 11 234555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA 336 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 336 (377)
.+..++.++ ..+++.+..++++.... .+..|+.
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 555566554 55677776666665433 2444554
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.42 E-value=8 Score=25.29 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=22.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042154 207 GFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSK 262 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (377)
.+.+.|++++|..+.+.+. .||...|.++... +.|..+++..-+.++...
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 3444555555544433222 3454444443322 445555555544444444
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.95 E-value=8.6 Score=25.19 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042154 178 SLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVG 257 (377)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (377)
..++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|.++... +.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34455555544444432 11122222334445566666655544332 4555555544332 4555555555555
Q ss_pred HHHhCC
Q 042154 258 EMRSKE 263 (377)
Q Consensus 258 ~~~~~g 263 (377)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555443
No 272
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=81.13 E-value=13 Score=30.36 Aligned_cols=65 Identities=14% Similarity=0.306 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCC
Q 042154 165 SYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR--FADAEKIWETMVNMNVR 230 (377)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 230 (377)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 3566778888889999999999888632111 23344444445554433 45566777777766643
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.17 E-value=25 Score=28.81 Aligned_cols=20 Identities=10% Similarity=-0.137 Sum_probs=15.1
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 042154 344 RLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 344 ~~~~~g~~~~A~~~~~~~~~ 363 (377)
-|.-.|+...|..+++...+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 45568899999888887654
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.27 E-value=20 Score=27.12 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 042154 176 KGSLDSANTLLYEMEKKGIRL-DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRP 231 (377)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (377)
.+....+.++|..|...|+-. -+..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344567777777777665432 34456666666777777777777777777666555
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.00 E-value=9.8 Score=30.19 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=7.1
Q ss_pred HhcCCHHHHHHHHH
Q 042154 279 VNEGNLEEAKRWYN 292 (377)
Q Consensus 279 ~~~~~~~~a~~~~~ 292 (377)
+..|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34555555555554
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.45 E-value=16 Score=32.26 Aligned_cols=25 Identities=4% Similarity=0.080 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHh
Q 042154 59 IYTGTVQRLANAKRFRWIEEILEHQ 83 (377)
Q Consensus 59 ~~~~l~~~~~~~~~~~~a~~~~~~~ 83 (377)
.++.+++.|...+.++.|..++.+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4444555555555555555555444
No 277
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=76.32 E-value=14 Score=27.41 Aligned_cols=52 Identities=8% Similarity=0.135 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCc
Q 042154 73 FRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQ 125 (377)
Q Consensus 73 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 125 (377)
.+.+..+++.+...|...+..+....+....+.|.+. ...+-.++...|+.+
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCH
Confidence 3456667777777787777777777777766544322 345556677777543
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.04 E-value=14 Score=28.46 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 042154 281 EGNLEEAKRWYNKSGCG-MNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV 333 (377)
Q Consensus 281 ~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 333 (377)
..+......++...++- --...|......+...|++.+|.++|+..++.+-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34555555555544333 345567777778888888888888888888877666
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.32 E-value=55 Score=29.89 Aligned_cols=55 Identities=7% Similarity=-0.173 Sum_probs=36.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 307 VPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 307 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
+..+...|....|...+..+.+. .+......+.......|..+.+..........
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~ 442 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLW 442 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCT
T ss_pred HHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 44577888888888888877663 23344445556666788888777666554443
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.34 E-value=28 Score=27.09 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSK--EINP----DVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCE 312 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (377)
-++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+.....+........+..+.+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~L~r 103 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTENMIK 103 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 356667777777777777765542 2221 0011111122222222222222222211113444445555566666
Q ss_pred cCChHHHHHHHHHHHh
Q 042154 313 KGDLDFAFNLCKRTFS 328 (377)
Q Consensus 313 ~g~~~~a~~~~~~~~~ 328 (377)
.|+.++|.++|=+...
T Consensus 104 Lg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 104 LGLPEQALDLFLQNRS 119 (235)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHH
Confidence 6666666666654443
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.15 E-value=44 Score=26.22 Aligned_cols=214 Identities=17% Similarity=0.160 Sum_probs=100.1
Q ss_pred HHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc--chhHHHHHHHH
Q 042154 26 SVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE--GFTARLIALYG 103 (377)
Q Consensus 26 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 103 (377)
..+...++.|+.+....+++.-.... ...+..- .+.+...+..|+.+-+..+++. +..++. ......+...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGG-WTPLHNAVQMSREDIVELLLRH----GADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTC-CCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCC-CcHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHH
Confidence 44556677888877776665432222 1112111 2344555667777655555543 322211 11123455566
Q ss_pred ccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHH------------HHHHHHH
Q 042154 104 KAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLV------------SYNTIIK 171 (377)
Q Consensus 104 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------------~~~~l~~ 171 (377)
..|+.+-+..+++.-.... ..+...++. +...+..|+.+-+..+++. |..++.. .-...+.
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVN-ECDFYGFTA-FMEAAVYGKVKALKFLYKR-----GANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTT-CBCTTCCBH-HHHHHHTTCHHHHHHHHHT-----TCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred HcCCHHHHHHHHHcCCCCC-ccCcccCCH-HHHHHHhCCHHHHHHHHHh-----CCCcccccccHHHHHhhccCCCcHHH
Confidence 7788777666666432211 111111222 3334556666555544443 2222211 0112334
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHh
Q 042154 172 AFVDKGSLDSANTLLYEMEKKGIRLD---LITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVR---SYNARLDGLAI 245 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 245 (377)
..+..|+.+-+..+++.. |..++ ..-.+.+.. .+..++.....++.+.+.+.|..++.. -.+ .+...+.
T Consensus 154 ~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 228 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKT-PLILAVE 228 (285)
T ss_dssp HHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCc-HHHHHHH
Confidence 455677776555555431 32222 222233333 334555555566777777777554432 122 2333446
Q ss_pred cCCHHHHHHHHH
Q 042154 246 EKQTKKALELVG 257 (377)
Q Consensus 246 ~~~~~~a~~~~~ 257 (377)
.|+.+-+..+++
T Consensus 229 ~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 229 KKHLGLVQRLLE 240 (285)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHh
Confidence 677665554444
No 282
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=66.59 E-value=31 Score=24.40 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 284 LEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
.+.+.+.++..|.+++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 6 ~~~~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34455556666666665432 34445555566677888888887777666777777777777776654
No 283
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=66.59 E-value=4.2 Score=23.67 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHhcccCCCCccchh
Q 042154 34 ENNLKRLVDKFKKSSDLGRFRTNTG 58 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~ 58 (377)
.-+++.|+..|..+...+.+||++.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4588999999999988887888764
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=66.56 E-value=34 Score=24.76 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=6.0
Q ss_pred CCHHHHHHHHH
Q 042154 282 GNLEEAKRWYN 292 (377)
Q Consensus 282 ~~~~~a~~~~~ 292 (377)
|++-+|.++++
T Consensus 46 g~yfeaHEvLE 56 (161)
T 2ijq_A 46 GEFHESHDCFE 56 (161)
T ss_dssp TCHHHHHHHHH
T ss_pred CCchHHHHHHH
Confidence 55555555555
No 285
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=66.15 E-value=37 Score=24.97 Aligned_cols=83 Identities=14% Similarity=0.002 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----------------Chh-hHHH
Q 042154 278 FVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLV----------------DQA-PLQL 340 (377)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------~~~-~~~~ 340 (377)
+.-.|.+..++-++...+ .-...-|..| +|-+.+++..|...+..++...+.- |.+ .++.
T Consensus 43 LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 345677777777665332 1222233333 5677888888888888887543331 222 3567
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc
Q 042154 341 VVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 341 l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
+...|.+.|+.++|...+..--.
T Consensus 120 ~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhhcC
Confidence 77888999999999998775433
No 286
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=64.14 E-value=64 Score=27.10 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCC--hHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKR--FRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
....++.-|...|+.++|...++.+.... .-.......++......++ .+.+..++..+...+..+...+...+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~--~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPK--HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCG--GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCch--hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 46778899999999999999999985210 0112223333333333322 2445555666665555555555544444
Q ss_pred HH
Q 042154 101 LY 102 (377)
Q Consensus 101 ~~ 102 (377)
.+
T Consensus 92 ll 93 (364)
T 3l6a_A 92 VL 93 (364)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.14 E-value=21 Score=24.67 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcC--ChHHHHHHHHHhhhhcCCCccchh
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAK--RFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
....++.-|...|+.++|.+.++.+.... +. ...+...+..++-+.+ ..+.+..++..+...+..+...+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 45677888888888899988888874211 11 1223333444444432 235566666666655555544444
No 288
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=64.07 E-value=42 Score=25.79 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCC
Q 042154 74 RWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNC 123 (377)
Q Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 123 (377)
+.+..+++.+...|...+..+....+....+.+.+ ....+-.++...|+
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI 141 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGI 141 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCC
Confidence 44455555566666655555555555554431111 13334444445554
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.90 E-value=45 Score=25.94 Aligned_cols=89 Identities=8% Similarity=0.092 Sum_probs=45.3
Q ss_pred HHHHHHhCCChhHHHHHHHhchhhc-CCCc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 042154 133 LLGACVNSKKFDEVDGLFKDLPHKL-GIEP----DLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLG 207 (377)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (377)
-++.+....++++|.+++++..... +.++ +.......++.-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 3556677777777777776654321 1111 111122223333333333334444444422 3355556666677
Q ss_pred HHcCCCHHHHHHHHHHH
Q 042154 208 FYSNGRFADAEKIWETM 224 (377)
Q Consensus 208 ~~~~~~~~~a~~~~~~~ 224 (377)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 77778888887777544
No 290
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=61.58 E-value=26 Score=25.44 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCH
Q 042154 286 EAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSE--RCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
.+.+.++..|.+.+.. -..++..+...++.-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 19 ~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444444666666543 334455556666666777777777766 5556666666666666666643
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.27 E-value=44 Score=23.91 Aligned_cols=84 Identities=8% Similarity=0.061 Sum_probs=54.0
Q ss_pred HHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCc-cchhHHHHHHHHccCCHHHHHHHHH
Q 042154 38 KRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISK-EGFTARLIALYGKAAMFENARKVFD 116 (377)
Q Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 116 (377)
+.++..|..... .+-|+.-...-+. |+.. .+.+.++|..|...+.... ..+|......+-..|++.+|.++|+
T Consensus 52 Erc~~~f~~~~~---YknD~RyLklWl~-ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKK---YHNDPRFISYCLK-FAEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGG---GTTCHHHHHHHHH-HHTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccccc---ccCCHHHHHHHHH-HHHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555544332 3455543333332 3322 2448889998888875544 4567778888899999999999999
Q ss_pred hcCCCCCCccH
Q 042154 117 EMPGRNCEQTV 127 (377)
Q Consensus 117 ~~~~~~~~~~~ 127 (377)
.-++.+-.|-.
T Consensus 126 ~Gi~~~A~P~~ 136 (152)
T 4a1g_A 126 RGIQNQAEPRE 136 (152)
T ss_dssp HHHHTTCBSHH
T ss_pred HHHHcCCccHH
Confidence 98877656643
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.79 E-value=77 Score=26.55 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=30.5
Q ss_pred HHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC--hhHHHHHHHhch
Q 042154 97 RLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK--FDEVDGLFKDLP 154 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 154 (377)
.++.-|...++.++|...++++..... .......++......++ -+.+-.++..+.
T Consensus 59 ~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 59 PIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 566677777788888887777654321 22333334443333332 234555555554
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=59.44 E-value=27 Score=24.98 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcC--ChHHHHHHHHHhhhhcCCCccchh
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAK--RFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
..+.++.-|...|+.++|.+.++.+.... + ....+...+..++-+.+ ..+.+..++..+...+..+...+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-c-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 46677888888899999999888874211 1 11223333444444422 244566666666655555544443
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.35 E-value=1.2e+02 Score=29.47 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 042154 273 ALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~ 292 (377)
.+..+|...|++++|..+|+
T Consensus 845 v~gr~~L~~ge~~~A~~~F~ 864 (950)
T 4gq2_M 845 LKALIYLKSKEAVKAVRCFK 864 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 45555566666666666666
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=56.14 E-value=58 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=13.3
Q ss_pred HHHHHHHccCCHHHHHHHHHhcC
Q 042154 97 RLIALYGKAAMFENARKVFDEMP 119 (377)
Q Consensus 97 ~l~~~~~~~~~~~~A~~~~~~~~ 119 (377)
.++.-|...|+.++|.+.++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 35555555566666666666654
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.87 E-value=56 Score=23.73 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCC-CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 042154 182 ANTLLYEMEKKGIRL-DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPN 232 (377)
Q Consensus 182 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 232 (377)
..++|..|..+|+-. -+..|......+-..|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 555677776665533 344556666666667777777777777776665554
No 297
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.21 E-value=43 Score=24.63 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=5.3
Q ss_pred HHHHHHHHhCCC
Q 042154 218 EKIWETMVNMNV 229 (377)
Q Consensus 218 ~~~~~~~~~~~~ 229 (377)
.++.+.+.+.|.
T Consensus 158 ~~~v~~Ll~~ga 169 (201)
T 3hra_A 158 QDIVKLLMENGA 169 (201)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 344444444443
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.88 E-value=93 Score=25.39 Aligned_cols=76 Identities=11% Similarity=0.217 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042154 271 FYALIKGFVNEGNLEEAKRWYNKSGCGM--NKAIFKLLVPFVCEKGD--LDFAFNLCKRTFSERCLVDQAPLQLVVDRLA 346 (377)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (377)
...++.-|...|+.++|.+.+++.+.+. ...+...+..++-+.++ .+...+++..+.+.++-+.......+...+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~ 248 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYN 248 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4678888889999999999999555321 12234444445554433 4557788888887776544444333333333
No 299
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=52.46 E-value=28 Score=19.22 Aligned_cols=19 Identities=11% Similarity=0.433 Sum_probs=9.5
Q ss_pred ccHHHHHHHHHhcccCCCC
Q 042154 35 NNLKRLVDKFKKSSDLGRF 53 (377)
Q Consensus 35 ~~~~~A~~~~~~~~~~~~~ 53 (377)
++...|+++++++.+.|.+
T Consensus 7 RDv~RaiELle~lq~sgev 25 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEV 25 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSS
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3445555555555554433
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.03 E-value=53 Score=22.78 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=32.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 224 MVNMNVRPNVRSYNARLDGLAIEK-QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG 282 (377)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 282 (377)
+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 445665555332 23444454444 55667777777776655556666555556665555
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.22 E-value=47 Score=23.43 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 223 TMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 4456666665432 33444444555 56788888888777666666666666666666653
No 302
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=50.64 E-value=50 Score=21.66 Aligned_cols=74 Identities=14% Similarity=0.003 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHH
Q 042154 72 RFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFK 151 (377)
Q Consensus 72 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (377)
+-++|..+-+.+...+. .+.+.-+-+..+.+.|++++|..+.+.+. -||...|.++.. .+.|.-+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34444444444444332 22222123334455566666655555444 255555554432 34555555555554
Q ss_pred hc
Q 042154 152 DL 153 (377)
Q Consensus 152 ~~ 153 (377)
.+
T Consensus 93 ~l 94 (115)
T 2uwj_G 93 GL 94 (115)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.22 E-value=64 Score=22.70 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 223 TMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG 282 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 282 (377)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3556666555332 3344445455556667777777776655556666655666666655
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.13 E-value=60 Score=22.37 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 042154 272 YALIKGFVNEGNLEEAKRWYN 292 (377)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~ 292 (377)
..++.-|...|+.++|.+.++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~ 31 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLK 31 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 344455555555555555555
No 305
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=49.80 E-value=17 Score=21.03 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcC
Q 042154 316 LDFAFNLCKRTFSERCLVDQAPLQLVVDRL-AKEL 349 (377)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g 349 (377)
.++|.+.|.+|++..-.++..+|...+..+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 468889999988876555667888888877 5443
No 306
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=49.30 E-value=53 Score=21.57 Aligned_cols=74 Identities=9% Similarity=-0.013 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHH
Q 042154 72 RFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFK 151 (377)
Q Consensus 72 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (377)
+-++|..+-+.+...+. .+.+.-+-+..+.+.|++++|..+.+.+. -||...|.++.. .+.|.-+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34445444444444332 22222123334455566666666555554 255555554432 34444555555554
Q ss_pred hc
Q 042154 152 DL 153 (377)
Q Consensus 152 ~~ 153 (377)
.+
T Consensus 94 ~l 95 (116)
T 2p58_C 94 RL 95 (116)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=49.20 E-value=51 Score=23.23 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 288 KRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
.+.++..|.+++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345556666665542 23344444555 567888888887777666777776677777766643
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.38 E-value=11 Score=29.66 Aligned_cols=188 Identities=13% Similarity=0.032 Sum_probs=85.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHH--cCCCHHHHHHHHHHHHhCC---------CC-CC
Q 042154 172 AFVDKGSLDSANTLLYEMEKKGIRLDLI-------TFNTLLLGFY--SNGRFADAEKIWETMVNMN---------VR-PN 232 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~-~~ 232 (377)
..++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +. .|
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3455677776666666655554444322 2233333322 4566666555555443211 10 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHh--c
Q 042154 233 VRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFT----------------FYALIKGFVNEGNLEEAKRWYNK--S 294 (377)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~--~ 294 (377)
..-++.|.. .+..|+.+-+..++ +.|..++... -...+...+..|+.+-+..+++. .
T Consensus 91 ~~g~t~L~~-A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 91 YRGQTALHI-AIERRCKHYVELLV----EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp EESBCHHHH-HHHTTCHHHHHHHH----HTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred cCCCCHHHH-HHHcCCHHHHHHHH----hCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 112223333 33556655444333 3444443221 11223344567777766666662 5
Q ss_pred CCCCCH---HHHHHHHHHHHhcCC----hHHHHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcCCHHHHHHH
Q 042154 295 GCGMNK---AIFKLLVPFVCEKGD----LDFAFNLCKRTFSERCLV----------DQAPLQLVVDRLAKELRVEEAKEL 357 (377)
Q Consensus 295 ~~~~~~---~~~~~l~~~~~~~g~----~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 357 (377)
|..++. .-.+.|..+...... .+...++++.+++.|..+ |..-.+ -+...++.|+.+-+.-+
T Consensus 166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTCHHHHHHH
T ss_pred CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCCHHHHHHH
Confidence 554433 223344333322221 122234445555543222 222222 34445667888888777
Q ss_pred HHhhccCC
Q 042154 358 VELGKTNS 365 (377)
Q Consensus 358 ~~~~~~~~ 365 (377)
+++-....
T Consensus 245 l~~g~~~~ 252 (260)
T 3jxi_A 245 IRREIADA 252 (260)
T ss_dssp HHHHHHHH
T ss_pred HHhCCCcc
Confidence 77665443
No 309
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.97 E-value=60 Score=23.03 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=35.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 223 TMVNMNVRPNVRSYNARLDGLAIEK-QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3556666655332 23444444444 556677777777776655666666666666666664
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=47.77 E-value=35 Score=24.69 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=18.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHcCC
Q 042154 170 IKAFVDKGSLDSANTLLYEMEKK--GIRLDLITFNTLLLGFYSNG 212 (377)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 212 (377)
+..+...++.-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444455555555443 33334333333344444433
No 311
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.31 E-value=1.3e+02 Score=25.28 Aligned_cols=204 Identities=11% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcC--ChHHHHHHHHHhhhhcCCCccchhHHHHH
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAK--RFRWIEEILEHQKQYKDISKEGFTARLIA 100 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 100 (377)
....+|.-|...++.++|...++.+.... . .......++......+ .-+.+-.++..+.. +..+...+...+..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~-~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE-M--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG-G--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch-h--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 45667788888999999999999875321 1 2333344444333322 23455556665553 55566666555555
Q ss_pred HHHccCCHH----HHHHHHHh----cCCC-CCCccHHHHHHHHHHHHhCC--ChhHHHHHH---------Hhchh-hcCC
Q 042154 101 LYGKAAMFE----NARKVFDE----MPGR-NCEQTVLSFNALLGACVNSK--KFDEVDGLF---------KDLPH-KLGI 159 (377)
Q Consensus 101 ~~~~~~~~~----~A~~~~~~----~~~~-~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~---------~~~~~-~~~~ 159 (377)
.+....+.. .|..++-. +... .++|.... ......-+..+ -.+.|..++ +.... ..+.
T Consensus 132 lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~-~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~ 210 (358)
T 3eiq_C 132 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYID-SYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 210 (358)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTG-GGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSS
T ss_pred HHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHH-HHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCC
Confidence 554444322 12222221 1111 11111100 00000000000 011111111 11111 0122
Q ss_pred CcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCC
Q 042154 160 EPDL---VSYNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR--FADAEKIWETMVNMNVRPN 232 (377)
Q Consensus 160 ~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 232 (377)
.|.. .....++.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+...|+-+.
T Consensus 211 ~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 211 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 2321 23577788888889999999999888643211 23344455555555433 4567777877877765433
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.23 E-value=75 Score=22.68 Aligned_cols=63 Identities=14% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCC
Q 042154 166 YNTIIKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR--FADAEKIWETMVNMNV 229 (377)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 229 (377)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34455556666666666666666542111 112233333333433221 3445555555555543
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=46.26 E-value=60 Score=23.03 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=35.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 289 RWYNKSGCGMNKAIFKLLVPFVCEKG-DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
+.++..|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 334455555554322 3344444444 5566777777777766666666666666666666643
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=46.18 E-value=41 Score=21.79 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHH
Q 042154 106 AMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVD 147 (377)
Q Consensus 106 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (377)
...+.|.++++.+..+| ..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 46778888888888876 467777777776666655443
No 315
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.99 E-value=36 Score=23.47 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=35.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 305 LLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 305 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45666666677778888888888877777777777777777777754
No 316
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=45.92 E-value=2.2e+02 Score=27.58 Aligned_cols=157 Identities=14% Similarity=0.061 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCH---HHHHHHHHHHHHCC----CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042154 167 NTIIKAFVDKGSL---DSANTLLYEMEKKG----IRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNAR 239 (377)
Q Consensus 167 ~~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (377)
..++...|..|.. +.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4456777777764 46777887766532 445543 333334445677776667777777653 44555678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH------hcCCCCCHHHHHHHHHHHHh
Q 042154 240 LDGLAIEKQTKKALELVGEMRSKE-INPDVFTFYALIKGFVNEGNLEEAKRWYN------KSGCGMNKAIFKLLVPFVCE 312 (377)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~l~~~~~~ 312 (377)
+.+++...+.....++++...... +++. .....+..........+.|.+++. ..........+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 888888888888888888776543 3332 222222222223334566777777 12222333456677776666
Q ss_pred cCChHHHHHHHHHHHhc
Q 042154 313 KGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 313 ~g~~~~a~~~~~~~~~~ 329 (377)
.-.-++-.+-++...+.
T Consensus 844 ~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TCCSHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHhh
Confidence 55555555555665554
No 317
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.35 E-value=32 Score=24.07 Aligned_cols=48 Identities=15% Similarity=0.015 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 304 KLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 304 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345666666666777888888888877777777777777777777754
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.35 E-value=79 Score=22.39 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 287 AKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
+.+.++..|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 14 ~~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 334444555544432 2234445555555666777777777666666666666666666666643
No 319
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.42 E-value=1.3e+02 Score=24.68 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeeeccC
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNLKF 373 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 373 (377)
+...-+....+.+++..|..+-+++++.+.. .. ..++|.+++....+++.....+.|
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~--~~-------------~a~qArkil~~ce~~~~Da~eidy 265 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISS--GP-------------RAEQARKIKNKADSMASDAIPIDF 265 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--SH-------------HHHHHHHHHHHHHTSCCCSSCCSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--HH-------------HHHHHHHHHHHHhcCCCCccccCC
Confidence 4556677788999999999999999886543 11 346688888888887776666666
No 320
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.01 E-value=2e+02 Score=26.59 Aligned_cols=164 Identities=6% Similarity=-0.038 Sum_probs=0.0
Q ss_pred HHHHHHHhhh---cccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHH-----------HHHHHhhh----
Q 042154 24 IGSVIRGIYK---ENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIE-----------EILEHQKQ---- 85 (377)
Q Consensus 24 ~~~li~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~---- 85 (377)
+..||..|.+ ..++.+|++.|-.+...++-.-....+..+-......+.++... -++++...
T Consensus 356 ~arLI~~Yt~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l 435 (661)
T 2qx5_A 356 FANILANYTKSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHV 435 (661)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTC
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhccccc
Q ss_pred -hcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC------------hhHHHHHHHh
Q 042154 86 -YKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK------------FDEVDGLFKD 152 (377)
Q Consensus 86 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~ 152 (377)
........+......-+...|++++|..+|+...+.. --....|.++.-....-. .+.-..+.++
T Consensus 436 ~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~ 513 (661)
T 2qx5_A 436 RDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYD--IVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARR 513 (661)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcccccccccccccccccccHHHHHHH
Q ss_pred chhhcCCCc---------CHHHHHHHHHHH-----HHcCCHHHHHHHHHHH
Q 042154 153 LPHKLGIEP---------DLVSYNTIIKAF-----VDKGSLDSANTLLYEM 189 (377)
Q Consensus 153 ~~~~~~~~p---------~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~ 189 (377)
+.+.+.-.| +..|+..|++.. ...|+++.|++.++++
T Consensus 514 i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 514 MASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 321
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.68 E-value=1.8e+02 Score=25.91 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCH--HHH-HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 042154 125 QTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDL--VSY-NTIIKAFVDKGSLDSANTLLYEMEKK 192 (377)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (377)
.-...+|.+++.|...+.++.|..+..+..--....++. ..| ..+.+.+.-.+++.+|.+.+..+...
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 346678999999999999999999998763100111121 122 23456677889999999999988765
No 322
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=42.71 E-value=41 Score=19.94 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHh
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN 69 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (377)
.++.+++.++...-.+.++..+.++.+.| ..+..+|..-++.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g--~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG--TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 46667777777777777777777777776 3444455555555544
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.06 E-value=1.8e+02 Score=25.48 Aligned_cols=140 Identities=13% Similarity=0.185 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 177 GSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELV 256 (377)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (377)
.+.+.|.++-. +.|++--...|..-.+.+...|++++|-++-..... |+-.+..|.+.+-..=...|+..-.+.+|
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 45555544432 334443444455566666777777777666544432 23345555555444444445556666677
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042154 257 GEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRT 326 (377)
Q Consensus 257 ~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 326 (377)
..+.+.| ..+..--..+++.-..+|+.+-..+++.+..+......=..+ +..+..-|+.+|.+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 7766665 345444445666666677777777777755555554432222 444566676666554
No 324
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.91 E-value=1.1e+02 Score=23.09 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=11.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC
Q 042154 172 AFVDKGSLDSANTLLYEMEKKG 193 (377)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~ 193 (377)
..+..|+.+.+..+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3345566665555555544444
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.85 E-value=91 Score=22.08 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=21.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEG 282 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 282 (377)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444455555555555444444444444455555544
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.43 E-value=94 Score=23.35 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=13.4
Q ss_pred HHHHHHccCCHHHHHHHHHhcCC
Q 042154 98 LIALYGKAAMFENARKVFDEMPG 120 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~~~~ 120 (377)
.+..|.+.|.+++|.++|++...
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHhc
Confidence 44556666666666666666433
No 327
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=41.17 E-value=86 Score=25.97 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhc-CChHHHHHHHHHhhhhcCCCccchh
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANA-KRFRWIEEILEHQKQYKDISKEGFT 95 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~ 95 (377)
....++.-|...|+.++|...++.+.... +.+ ..+...+..++-+. ...+.+..++..+.+.+..+...+.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~-~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~ 84 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPS-LLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYY 84 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG-GHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 45678888999999999999999885221 111 11222222222221 1234555566666655554444443
No 328
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.77 E-value=47 Score=23.06 Aligned_cols=60 Identities=12% Similarity=-0.015 Sum_probs=32.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 042154 290 WYNKSGCGMNKAIFKLLVPFVCEKG-DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELR 350 (377)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (377)
.++..|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 34445555544322 2344444444 555677777777666655566666556666665554
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.54 E-value=1.2e+02 Score=23.26 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH---hcCCCCC
Q 042154 250 KKALELVGEMRSKEINPD-VFTFYALIKGFVNEGNLEEAKRWYN---KSGCGMN 299 (377)
Q Consensus 250 ~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~ 299 (377)
+...++|..|...|+--. ...|......+...|++.+|.++|+ ..+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 567788888888866443 4466777777888889999988888 5555553
No 330
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=40.09 E-value=1.7e+02 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHhcCC
Q 042154 96 ARLIALYGKAAMFENARKVFDEMPG 120 (377)
Q Consensus 96 ~~l~~~~~~~~~~~~A~~~~~~~~~ 120 (377)
..++.-|...|+.++|.+.++++..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 4677778888888888888888764
No 331
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.73 E-value=36 Score=19.16 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHhhc
Q 042154 320 FNLCKRTFSERCLVDQAPLQLVVDRLAKELR--VEEAKELVELGK 362 (377)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 362 (377)
.+.++.+++.|+.++ ....++.+.|. ++.|.+++.+|-
T Consensus 10 ~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHhc
Confidence 456677777777643 34456777777 899999988873
No 332
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=39.05 E-value=73 Score=24.15 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=6.3
Q ss_pred hcCChHHHHHHHHHH
Q 042154 312 EKGDLDFAFNLCKRT 326 (377)
Q Consensus 312 ~~g~~~~a~~~~~~~ 326 (377)
..|+...+.++.+.+
T Consensus 219 ~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 219 LNSQVWSALQMSKAL 233 (237)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 333
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.87 E-value=1.8e+02 Score=24.67 Aligned_cols=84 Identities=6% Similarity=0.011 Sum_probs=38.0
Q ss_pred HHHHhhhcccHHHHHHHHHhcccCCCCccchh--hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHc
Q 042154 27 VIRGIYKENNLKRLVDKFKKSSDLGRFRTNTG--IYTGTVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGK 104 (377)
Q Consensus 27 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (377)
.+...+..|+.+-+..+++.- ..++.. ...+.+...+..|+.+-+.-+++.-....... ......+...+.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g-----~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~ 89 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRG-----ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA--KDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT-----CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC--TTSCCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCCCHHHHHHH
Confidence 344455667766665555432 122211 11123444455666665555554322111111 111124445556
Q ss_pred cCCHHHHHHHHHh
Q 042154 105 AAMFENARKVFDE 117 (377)
Q Consensus 105 ~~~~~~A~~~~~~ 117 (377)
.|+.+-+.-+++.
T Consensus 90 ~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 90 IGHTNMVKLLLEN 102 (437)
T ss_dssp HTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHhC
Confidence 6666666555554
No 334
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.58 E-value=83 Score=24.03 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=15.6
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 042154 308 PFVCEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 308 ~~~~~~g~~~~a~~~~~~~~~ 328 (377)
-.|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 357778888888888877765
No 335
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.41 E-value=70 Score=19.55 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=37.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 042154 289 RWYNKSGCGMNKAIFKLLVPFVCEKG-DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRV 351 (377)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (377)
+.++..|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34445565665543 33445555543 4556777777777766666777777777777776643
No 336
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.97 E-value=1.3e+02 Score=22.61 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=19.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCC
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG 212 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 212 (377)
+-.|++.|+-++-+|.+.| .|....-..++.+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666 444444444444444333
No 337
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.52 E-value=3.1e+02 Score=26.68 Aligned_cols=108 Identities=10% Similarity=0.003 Sum_probs=62.0
Q ss_pred HHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------
Q 042154 133 LLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSLDSANTLLYEMEKKGI------------------ 194 (377)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------ 194 (377)
++..+...+..+-|.++...+. -++..--.+..+|...|++++|...|+++-. |+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccC
Confidence 4445555555555544333321 1222223445566666666666666654321 11
Q ss_pred -----CCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 042154 195 -----RLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNV----RSYNARLDGLAIEK 247 (377)
Q Consensus 195 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 247 (377)
.....-|..++..+-+.+-++.+.++-+..++.--..|. ..|+.+..+.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 112236888999999999999999988887754222233 35677777766554
No 338
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=34.32 E-value=1.3e+02 Score=21.72 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=30.5
Q ss_pred hCCChhHHHHHHHhchhhcCCCc--CHHHHHHHHH------HHHHcCCHHHHHHHHHHHHH
Q 042154 139 NSKKFDEVDGLFKDLPHKLGIEP--DLVSYNTIIK------AFVDKGSLDSANTLLYEMEK 191 (377)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 191 (377)
..|++-+|-++++..-.. .-.+ +...|..||+ ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~-~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYN-YGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTT-TCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 347777777777766544 2233 3345555555 22456777777777776654
No 339
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=33.65 E-value=1.4e+02 Score=21.88 Aligned_cols=48 Identities=6% Similarity=0.086 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042154 216 DAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEI 264 (377)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 264 (377)
....++..+.+.|.--|...-..++....+.|.+. ...+-.++.+.|+
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI 98 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCC
Confidence 34444555555554433333333444433332221 1334444445554
No 340
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.50 E-value=69 Score=21.99 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 239 RLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444555555566677777777776555566666666666666653
No 341
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.09 E-value=1.6e+02 Score=22.47 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=10.0
Q ss_pred cccHHHHHHHHHhcccC
Q 042154 34 ENNLKRLVDKFKKSSDL 50 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~ 50 (377)
.+++.+-.++++.+...
T Consensus 32 ~~dFrq~rdi~eall~~ 48 (235)
T 3bu8_A 32 YGDFRQIRDIMQALLVR 48 (235)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34556666666666543
No 342
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.15 E-value=2.5e+02 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.007 Sum_probs=15.5
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 042154 161 PDLVSYNTIIKAFVDKGSLDSANTLLYEME 190 (377)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (377)
.+......+... ..|+...++.+++.+.
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMA 219 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 344444444443 4566666666666654
No 343
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.93 E-value=87 Score=22.73 Aligned_cols=26 Identities=4% Similarity=0.301 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHhcc
Q 042154 23 FIGSVIRGIYKENNLKRLVDKFKKSS 48 (377)
Q Consensus 23 ~~~~li~~~~~~~~~~~A~~~~~~~~ 48 (377)
....++.-|...++.++|...++.+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34566677777788888888887764
No 344
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.87 E-value=1.4e+02 Score=21.35 Aligned_cols=50 Identities=8% Similarity=0.078 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 042154 179 LDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVR 230 (377)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (377)
.+.+..+++.+.+.|.-.|...-...+....+.| .....+-.++..+|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 4455666666777766655555555555555433 2345566667777764
No 345
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=31.56 E-value=52 Score=20.60 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=26.5
Q ss_pred cHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCCh
Q 042154 36 NLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF 73 (377)
Q Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 73 (377)
..++|...|..|+...++.|+. +|...+...+..-++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCCcc
Confidence 4578888898888766576665 788777766665554
No 346
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.54 E-value=2.4e+02 Score=23.89 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCC
Q 042154 63 TVQRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKK 142 (377)
Q Consensus 63 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (377)
.+...+..|+.+-+..+++.-..... .+... ...+...+..|+.+-+..+++.-...+. .+....+ .+...+..|+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~~~~~-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t-~L~~A~~~g~ 92 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNV-SNVKV-ETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQT-PLHCAARIGH 92 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCC-SSSCC-CCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTSCC-HHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCC-HHHHHHHCCC
Confidence 34455678888777777654221111 11111 2356666778898888877775332211 1111111 2333445566
Q ss_pred hhHHHHHHHhchhhcCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 042154 143 FDEVDGLFKDLPHKLGIEPDL---VSYNTIIKAFVDKGSLDSANTLLY 187 (377)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~ 187 (377)
.+-+.-+++. |..++. ...+ .+...+..|+.+.+..+++
T Consensus 93 ~~~v~~Ll~~-----ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 93 TNMVKLLLEN-----NANPNLATTAGHT-PLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHHHHH-----TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhC-----CCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh
Confidence 6554444432 333321 1122 2334456677666555554
No 347
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.29 E-value=1.2e+02 Score=24.13 Aligned_cols=179 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042154 170 IKAFVDKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQT 249 (377)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (377)
+...+..|+.+-+..+++. |..++...-...+...+..|+.+-+..+++. ...+......-...+...+..|+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~ 108 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNM 108 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHcCCH
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 042154 250 KKALELVGEMRSKEINPDVFTF---YALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRT 326 (377)
Q Consensus 250 ~~a~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 326 (377)
+-+..+++. |..++.... ...+...+..|+.+-+..+++......+...-...+...+..|+.+-+.-+++.-
T Consensus 109 ~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 109 QTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042154 327 FSERCLVDQAPLQLVVDRLAKELRVEEAKELVE 359 (377)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 359 (377)
...... +..-.+..+...+..|+.+-+.-+++
T Consensus 185 ad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~ 216 (285)
T 3kea_A 185 TSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFK 216 (285)
T ss_dssp HHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTT
T ss_pred CCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHH
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.71 E-value=63 Score=22.56 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 238 ARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGN 283 (377)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 283 (377)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555555566677777777776656666666666666666664
No 349
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.43 E-value=62 Score=22.07 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=44.5
Q ss_pred cchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHH
Q 042154 92 EGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLF 150 (377)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 150 (377)
..+|.-.|...+..++.+-|+++++-.++.| +...|.+++-.|...=+++-++++-
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEla 87 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLELA 87 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHTT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHHH
Confidence 4455567888888899999999999888877 7778888888888888888777653
No 350
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=30.11 E-value=57 Score=19.73 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=26.0
Q ss_pred cHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCCh
Q 042154 36 NLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRF 73 (377)
Q Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 73 (377)
..++|.+.|..|.+..++.|+. +|...+..+....++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCccc
Confidence 4678888888888766566555 777777766655444
No 351
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.77 E-value=1.7e+02 Score=21.60 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=24.7
Q ss_pred CCCChhhHHH--HHHHHHhcCCHHHHHHHHHhhccCCc
Q 042154 331 CLVDQAPLQL--VVDRLAKELRVEEAKELVELGKTNSY 366 (377)
Q Consensus 331 ~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~ 366 (377)
..|...+|.. ....|...|..++...+|....+.++
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 4556655532 34567778999998888888776654
No 352
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.71 E-value=65 Score=21.95 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=11.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh
Q 042154 62 GTVQRLANAKRFRWIEEILEHQKQ 85 (377)
Q Consensus 62 ~l~~~~~~~~~~~~a~~~~~~~~~ 85 (377)
-.|...+..++.+-|.++++....
T Consensus 37 DAietAa~S~d~elaEeLL~yFVe 60 (125)
T 3qil_A 37 DAMQYASESKDTELAEELLQWFLQ 60 (125)
T ss_dssp HHHHTTTSSCCSHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444455555555444444
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=29.68 E-value=96 Score=24.25 Aligned_cols=21 Identities=5% Similarity=-0.054 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHhhc
Q 042154 342 VDRLAKELRVEEAKELVELGK 362 (377)
Q Consensus 342 ~~~~~~~g~~~~A~~~~~~~~ 362 (377)
+...++.|+.+-+.-+++.-.
T Consensus 237 L~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 237 LALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhChHHHHHHHHHCCC
Confidence 444567888887777777655
No 354
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.66 E-value=94 Score=27.07 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh--------hHH-HHHHHHHhcCCHHHHHHHHHhhccC
Q 042154 303 FKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQA--------PLQ-LVVDRLAKELRVEEAKELVELGKTN 364 (377)
Q Consensus 303 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~g~~~~A~~~~~~~~~~ 364 (377)
.+.+.+.|.+.++...+..+++.+...+..|+.. +|. .++..+...+++.+|.+.+..+.++
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3445566666666666666666655544322211 222 2444555666666666666555544
No 355
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.51 E-value=1.6e+02 Score=21.32 Aligned_cols=160 Identities=10% Similarity=0.031 Sum_probs=69.9
Q ss_pred HHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCcc--chhHHHHHHHHccC
Q 042154 29 RGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANAKRFRWIEEILEHQKQYKDISKE--GFTARLIALYGKAA 106 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 106 (377)
...+..|+.+....++..-...- -..+..-++ .+...+..|+.+-+..+++. +..++. ......+...+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQV-DEVDTEGNT-PLNIAVHNNDIEIAKALIDR----GADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCC-HHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCC-HHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcC
Confidence 33456788887777775432111 112222222 33444566776655555543 222211 11113445556678
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCC-HHHHHHH
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGS-LDSANTL 185 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~ 185 (377)
+.+-+..+++.-...--..+....+ .+...+..|+.+-+..+++.-... -...+..-.+.+..+ +..++ ...-.++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A-~~~~~~~~~~~~~ 160 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGRED-IDFQNDFGYTALIEA-VGLREGNQLYQDI 160 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCCCC-TTCCCTTSCCHHHHH-HHSSCCSHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCC-cCCCCCCCCCHHHHH-HHhccchhhHHHH
Confidence 8877777775432110011111111 123344566666555555432110 011222223333333 33343 3333455
Q ss_pred HHHHHHCCCCCC
Q 042154 186 LYEMEKKGIRLD 197 (377)
Q Consensus 186 ~~~~~~~~~~~~ 197 (377)
++.+.+.|..++
T Consensus 161 v~~Ll~~ga~~~ 172 (201)
T 3hra_A 161 VKLLMENGADQS 172 (201)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHCCCCCC
Confidence 666666665544
No 356
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=28.35 E-value=1.2e+02 Score=22.65 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=10.1
Q ss_pred HHhhhcccHHHHHHHHHhc
Q 042154 29 RGIYKENNLKRLVDKFKKS 47 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~ 47 (377)
...+..|+.+.+..+++.-
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 3444556666655555443
No 357
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.11 E-value=1.9e+02 Score=21.72 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=20.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCC
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNG 212 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 212 (377)
+-.|++.|+-++-+|++.|..|....-..++-+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34566666666666666665554444444444444333
No 358
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.53 E-value=94 Score=19.92 Aligned_cols=18 Identities=33% Similarity=0.207 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 042154 340 LVVDRLAKELRVEEAKEL 357 (377)
Q Consensus 340 ~l~~~~~~~g~~~~A~~~ 357 (377)
.....+.+.|++++|++.
T Consensus 20 RrAe~ll~~gkydeAIec 37 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISC 37 (97)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHH
Confidence 334445555555555443
No 359
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.52 E-value=2e+02 Score=21.83 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=29.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcCCC-----HHHHHHHHHHHHhCCC
Q 042154 175 DKGSLDSANTLLYEMEKKGIRLDLITFNTLLLGFYSNGR-----FADAEKIWETMVNMNV 229 (377)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 229 (377)
+-.|++.|+-++-+|++.|..|....-..++-+.-..|. ...|...++.....|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 345677777777777776665555544544444444432 2344444444444453
No 360
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=27.37 E-value=2.9e+02 Score=23.55 Aligned_cols=211 Identities=9% Similarity=0.004 Sum_probs=110.6
Q ss_pred CHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhC----C-C-hhHHH--------HHHHhchhhcCCCcC-----HHHHH
Q 042154 107 MFENARKVFDEMPGRNCEQTVLSFNALLGACVNS----K-K-FDEVD--------GLFKDLPHKLGIEPD-----LVSYN 167 (377)
Q Consensus 107 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~-~-~~~a~--------~~~~~~~~~~~~~p~-----~~~~~ 167 (377)
.+..++.+..-+... .+...|..++..+... . . ..+.. +++....++.|..++ ...-.
T Consensus 125 ~~~~~l~l~~yL~~E---~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~~~~~~~~~lR~ 201 (419)
T 3rjo_A 125 SIEKALDLSLYLKHE---TEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEGSVSERMLRS 201 (419)
T ss_dssp CHHHHHHHHGGGGGC---CSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSCCSCHHHHHHHH
T ss_pred CHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 566777777666543 4566666555443211 1 1 01111 222223334455543 22344
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHCC----CCCCHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042154 168 TIIKAFVDKGS---LDSANTLLYEMEKKG----IRLDLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARL 240 (377)
Q Consensus 168 ~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (377)
.++...|..|+ .+.|.+.|+.....+ ++||... .+...-.+ ..+.-..+++..... .+..--..++
T Consensus 202 ~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~ll 274 (419)
T 3rjo_A 202 QLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQIE 274 (419)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 56677778886 457778888876542 4555432 22222122 234444555666554 3555667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-cCCHHHHHHHHH------hcCCCCCHHHHHHHHHHHHh
Q 042154 241 DGLAIEKQTKKALELVGEMRSKEI-NPDVFTFYALIKGFVN-EGNLEEAKRWYN------KSGCGMNKAIFKLLVPFVCE 312 (377)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~l~~~~~~-~~~~~~a~~~~~------~~~~~~~~~~~~~l~~~~~~ 312 (377)
.+++...+.....++++......+ ++ ...... +.+... .-..+.|.+++. ...+.++...+..++.....
T Consensus 275 ~aL~~s~d~~ll~~~L~~~l~~~~ir~-qD~~~~-~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~ 352 (419)
T 3rjo_A 275 FALCRTQNKEKLQWLLDESFKGDKIKT-QEFPQI-LTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTN 352 (419)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTSSSCG-GGHHHH-HHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTT
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCCch-hHHHHH-HHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhh
Confidence 888888999988888888876543 33 222322 333333 334566777776 11222334566667766555
Q ss_pred cCChHHHHHHHHHHHhc
Q 042154 313 KGDLDFAFNLCKRTFSE 329 (377)
Q Consensus 313 ~g~~~~a~~~~~~~~~~ 329 (377)
.-.-++-.+-++...+.
T Consensus 353 ~~~t~~~l~e~~~Ff~~ 369 (419)
T 3rjo_A 353 QFSTRTRLEEVKGFFSS 369 (419)
T ss_dssp TCCSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 43334433444444443
No 361
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=27.03 E-value=1.4e+02 Score=19.96 Aligned_cols=75 Identities=15% Similarity=0.048 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----hcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 042154 248 QTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYN----KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLC 323 (377)
Q Consensus 248 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 323 (377)
.+.+|+.-+++.... ++|......++..+... ++.|+++.+ ..|+ .+.++...+....+.|-.+.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 567788888887654 45666666676665432 344444444 5565 345566677777777766554 556
Q ss_pred HHHHhc
Q 042154 324 KRTFSE 329 (377)
Q Consensus 324 ~~~~~~ 329 (377)
..|...
T Consensus 76 ~~m~~~ 81 (119)
T 1wty_A 76 LEMLEL 81 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 362
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.39 E-value=2.1e+02 Score=21.49 Aligned_cols=19 Identities=11% Similarity=-0.092 Sum_probs=9.9
Q ss_pred HHhhhcccHHHHHHHHHhc
Q 042154 29 RGIYKENNLKRLVDKFKKS 47 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~~ 47 (377)
...+..|+.+.+..+++.+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~ 32 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLF 32 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3344556666555555533
No 363
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.35 E-value=1.9e+02 Score=21.49 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=26.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhc
Q 042154 65 QRLANAKRFRWIEEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEM 118 (377)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 118 (377)
...+..|+.+.+..+++.-.......+..-. ..+...+..|+.+-+..+++.-
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~ 59 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKM 59 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHhcCccccccCCCCCC-CHHHHHHHcCCHHHHHHHHhcc
Confidence 3445667777666666553322111222222 2444555667766666665554
No 364
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.30 E-value=3.2e+02 Score=23.65 Aligned_cols=55 Identities=5% Similarity=-0.131 Sum_probs=35.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 042154 210 SNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQ-----TKKALELVGEMRSKEI 264 (377)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~g~ 264 (377)
+.++.+.|+.++.+|.+.|..|....-..+..+...-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 356888888888888888866665555555555555553 3345566666666664
No 365
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=25.43 E-value=70 Score=15.76 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=16.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc
Q 042154 341 VVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 341 l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
.+..|.+.|+.++|..+-+++..
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 46667778888888777766654
No 366
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.20 E-value=2.2e+02 Score=21.35 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=11.0
Q ss_pred HHHHHHccCCHHHHHHHHHh
Q 042154 98 LIALYGKAAMFENARKVFDE 117 (377)
Q Consensus 98 l~~~~~~~~~~~~A~~~~~~ 117 (377)
.+...+..|+.+-+..+++.
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHhC
Confidence 44445556666655555544
No 367
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=25.13 E-value=66 Score=20.72 Aligned_cols=47 Identities=9% Similarity=0.153 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHH---hcCCCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHh
Q 042154 280 NEGNLEEAKRWYN---KSGCGMNKAIFKLLVPFV-----CEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 280 ~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 328 (377)
..|++-+|.++++ ...-.|....|..+|... .+.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3477777777666 222223344555555532 234555 6666666555
No 368
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=25.10 E-value=1.8e+02 Score=20.31 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=32.0
Q ss_pred ChhhhhhccccCCCCCCCchHHHHHHHHhhhc-ccHHHHHHHHHhcccCCCCccchhhHH-HHHHHHHhc
Q 042154 3 FPSRLLSCSFSTTATATGPKFIGSVIRGIYKE-NNLKRLVDKFKKSSDLGRFRTNTGIYT-GTVQRLANA 70 (377)
Q Consensus 3 ~~~r~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 70 (377)
+....+.+..+..-..||......+.+..... ..+.+|.+.+.+=...+ .|+...+. .+++.|.+.
T Consensus 5 p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 5 PFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSN 72 (140)
T ss_dssp TTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHh
Confidence 44455555556655556655555555544332 23556666655544333 23333322 344555544
No 369
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.96 E-value=2.1e+02 Score=21.08 Aligned_cols=92 Identities=12% Similarity=-0.046 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042154 231 PNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWYNKSGCGMNKAIFKLLVPFV 310 (377)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 310 (377)
++...-...+.++.+.++.+ +...+..+.. .++...-...+.++...|+.+ +...+...-..++..+-...+.++
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADAL 167 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444455555555432 2333333332 244444444555555555432 222222111245555555556666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 042154 311 CEKGDLDFAFNLCKRTFS 328 (377)
Q Consensus 311 ~~~g~~~~a~~~~~~~~~ 328 (377)
.+.+. .++...+..+.+
T Consensus 168 ~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHCS-HHHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHHh
Confidence 66655 344455555544
No 370
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.69 E-value=3.6e+02 Score=23.66 Aligned_cols=139 Identities=13% Similarity=0.068 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042154 212 GRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQTKKALELVGEMRSKEINPDVFTFYALIKGFVNEGNLEEAKRWY 291 (377)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (377)
.+.+-|.++- .+.|++--...|..-...+...|++++|.++--...+ |+--+..|.+.+-..-...|...--+.+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 4555554443 2344433444555556666677777777666655433 23335555554444333344444455555
Q ss_pred H---hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 042154 292 N---KSGCGMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKT 363 (377)
Q Consensus 292 ~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 363 (377)
. ..| +.+..----+++.-...|+.+-..+.++ +..+..+.. |.+.. +..+..-|..+|.++.-
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEe----LGDlv-k~~d~~LAl~IY~~a~~ 484 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEE----LGDLV-KSVDPTLALSVYLRANV 484 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHH----HHHHH-HHHCSHHHHHHHHHHCC
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHH----hHhhh-hhcCHHHHHHHHHHcCC
Confidence 5 333 3333222233444444555444443332 222343333 22222 44466777777776643
No 371
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.69 E-value=1.4e+02 Score=19.13 Aligned_cols=36 Identities=19% Similarity=0.016 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042154 315 DLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEA 354 (377)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 354 (377)
..+.|.++++.+...| +..|..++.++...|...-|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 3455555555554433 22455555555444444333
No 372
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.30 E-value=2e+02 Score=23.64 Aligned_cols=79 Identities=16% Similarity=-0.036 Sum_probs=37.0
Q ss_pred HHHhcCCHHHHHHHHHh----cCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH--HHHHHHHHh
Q 042154 277 GFVNEGNLEEAKRWYNK----SGC---GMNKAIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPL--QLVVDRLAK 347 (377)
Q Consensus 277 ~~~~~~~~~~a~~~~~~----~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 347 (377)
..+..|+.+-+..+++. .+. ..+..-.+.| ...+..|+.+ +.+.+++.|..++.... ..-+...+.
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 253 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVR 253 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 33456777776666661 111 1111122222 2334556654 33344555554433211 122334455
Q ss_pred cCCHHHHHHHHHh
Q 042154 348 ELRVEEAKELVEL 360 (377)
Q Consensus 348 ~g~~~~A~~~~~~ 360 (377)
.|..+-+.-+++.
T Consensus 254 ~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 254 AAMVLLTKELLQK 266 (364)
T ss_dssp TCCHHHHHHHHHH
T ss_pred hChHHHHHHHHHc
Confidence 6777777777765
No 373
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.84 E-value=1.7e+02 Score=19.81 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=11.3
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 042154 207 GFYSNGRFADAEKIWETMVN 226 (377)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~ 226 (377)
.....++++.|..+...+..
T Consensus 70 ~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 70 QELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 34445566666666655554
No 374
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.51 E-value=2.3e+02 Score=21.10 Aligned_cols=24 Identities=4% Similarity=-0.049 Sum_probs=13.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCC
Q 042154 206 LGFYSNGRFADAEKIWETMVNMNV 229 (377)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~ 229 (377)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 344455666666666666666553
No 375
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.31 E-value=3.1e+02 Score=22.52 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhchhh
Q 042154 129 SFNALLGACVNSKKFDEVDGLFKDLPHK 156 (377)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (377)
+...-|....+.+++..|..+-+++++.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555566677788888887777777653
No 376
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.76 E-value=1.6e+02 Score=19.09 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=8.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH
Q 042154 256 VGEMRSKEINPDVFTFYALIKGF 278 (377)
Q Consensus 256 ~~~~~~~g~~p~~~~~~~l~~~~ 278 (377)
.+++..-|+.|+..+...++..|
T Consensus 32 ~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 32 AEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp HHHHHHHTCBCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHH
Confidence 33333334444443333333333
No 377
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.66 E-value=3.2e+02 Score=22.40 Aligned_cols=57 Identities=9% Similarity=0.226 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhhccCCceeeeccC
Q 042154 302 IFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVEEAKELVELGKTNSYCRYNLKF 373 (377)
Q Consensus 302 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 373 (377)
+...-+....+.+++..|..+-+++++.+ |+.. ..++|.+++....+++.....+.|
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~--p~~~-------------~~~qArkil~~ce~~~~da~eidy 256 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELG--PKPE-------------VAQQTRKILSACEKNPTDAYQLNY 256 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTC--CCHH-------------HHHHHHHHHHHHHHSCCBSSCCSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCHH-------------HHHHHHHHHHHHhcCCCCccccCC
Confidence 45556777889999999999999999864 3332 236688888888877777666666
No 378
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.57 E-value=95 Score=19.15 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=13.7
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042154 158 GIEPDLVSYNTIIKAFVDKGSLDSANTLLY 187 (377)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (377)
+++|++.||+-+....-+..-..++..+.+
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 455555566555554333333333333333
No 379
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=22.37 E-value=2.1e+02 Score=20.30 Aligned_cols=148 Identities=12% Similarity=0.182 Sum_probs=66.2
Q ss_pred cHHHHHHHHHhcccCCCCccchhhHHHHHHHHHhc-CChHHHHHHHHHhhhhc--CCCccchhHHHHHHHHccCCHHHHH
Q 042154 36 NLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLANA-KRFRWIEEILEHQKQYK--DISKEGFTARLIALYGKAAMFENAR 112 (377)
Q Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 112 (377)
...+..+.|+..-..| ..+..-+..++..+... .....+..++..+...+ ...-..+. .++.........+...
T Consensus 19 ~i~~l~~~fd~~d~~G--~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~-~~~~~~~~~~~~~~~~ 95 (183)
T 1s6c_A 19 ELQVLYRGFKNEXPSG--VVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFV-TALSILLRGTVHEKLR 95 (183)
T ss_dssp HHHHHHHHHHHHCTTS--EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHH-HHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHH-HHHHHHcCCCHHHHHH
Confidence 3444455555432222 33444444444443322 23445566666665432 11111222 2333333333445566
Q ss_pred HHHHhcCCCC-CCccHHHHHHHHHHHH-hCCC-----------hhHHHHHHHhchhhcCCCcCHHHHHHHHHHHHHcCCH
Q 042154 113 KVFDEMPGRN-CEQTVLSFNALLGACV-NSKK-----------FDEVDGLFKDLPHKLGIEPDLVSYNTIIKAFVDKGSL 179 (377)
Q Consensus 113 ~~~~~~~~~~-~~~~~~~~~~l~~~~~-~~~~-----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (377)
.+|..+-..| -..+..-+..++.... ..|. .+.+..+|..+-.. .-...+|.-+...+.+...+
T Consensus 96 ~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d---~dG~i~~~Ef~~~~~~~~~~ 172 (183)
T 1s6c_A 96 WTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKN---KDGIVTLDEFLESXQEDDNI 172 (183)
T ss_dssp HHHHHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTT---CSSEECHHHHHHHTTSCCHH
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCC---CCCcEeHHHHHHHHhcChHH
Confidence 6666654322 1234444444443331 1131 25566666665222 12234666666666666666
Q ss_pred HHHHHHHHHH
Q 042154 180 DSANTLLYEM 189 (377)
Q Consensus 180 ~~a~~~~~~~ 189 (377)
-..+..|+.+
T Consensus 173 ~~~l~~~d~~ 182 (183)
T 1s6c_A 173 MRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 6666666543
No 380
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.37 E-value=1.5e+02 Score=22.29 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcccCCCCccchhhH-----HHHHHHHHhcCChHHHHHHHHHhhhh
Q 042154 37 LKRLVDKFKKSSDLGRFRTNTGIY-----TGTVQRLANAKRFRWIEEILEHQKQY 86 (377)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 86 (377)
.+.|+.+|+.+.+.-. +-...- ...+..|.+.|.+++|.+++++.-..
T Consensus 94 LESAl~v~~~I~~e~~--~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHD--KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCC--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 5677777777765441 212222 23456788899999999999886554
No 381
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.22 E-value=3e+02 Score=21.90 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHh-CCCC
Q 042154 247 KQTKKALELVGEMRS-KEIN 265 (377)
Q Consensus 247 ~~~~~a~~~~~~~~~-~g~~ 265 (377)
|+.++|.+++.++.. .|..
T Consensus 241 ~~~~~a~~~l~~l~~~~g~~ 260 (319)
T 2chq_A 241 GNFMEARELLDRLMVEYGMS 260 (319)
T ss_dssp TCHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHHHcCCC
Confidence 566666666666665 5544
No 382
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.06 E-value=2.4e+02 Score=20.74 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=19.3
Q ss_pred CHHhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042154 197 DLITFNTLLLGFYSNGRFADAEKIWETMVNMNVRPNVRSYNARLDGLAIEKQ 248 (377)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (377)
+..+-...+.++.+.|+.+ +...+..+.. .++...-...+.++.+.+.
T Consensus 125 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 4444444444444444322 2233333332 1344444444444444444
No 383
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.46 E-value=1.2e+02 Score=22.27 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=29.6
Q ss_pred CchHHHHHHHHhhhcccHHHHHHHHHhcccCCCCccchhhHHHHHHHHHh
Q 042154 20 GPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNTGIYTGTVQRLAN 69 (377)
Q Consensus 20 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (377)
....++.++..++...-++.++..+..+.+.| ..+..+|---++.+++
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g--~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG--TIPLDTFVKQGRELAR 157 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 44456777777777777777777777776666 3444455555555544
No 384
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.13 E-value=1.7e+02 Score=18.52 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=35.4
Q ss_pred HHHHHHhhhhcCCCccchhHHHHHHHHccCCHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhCCChh
Q 042154 77 EEILEHQKQYKDISKEGFTARLIALYGKAAMFENARKVFDEMPGRNCEQTVLSFNALLGACVNSKKFD 144 (377)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (377)
..+++.+...+.......-. |.. .....+.|.++++.+...| ..+|..++.++.+.+...
T Consensus 25 ~~lld~L~~~~vlt~~~~e~--I~~--~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEEEK--VRN--EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHTSSCHHHHHH--HHT--SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCCCHHHHHH--HHc--CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 34555555554444333321 111 3566778888888887766 667777777777766533
No 385
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.00 E-value=2.1e+02 Score=19.59 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=10.0
Q ss_pred HHhhhcccHHHHHHHHHh
Q 042154 29 RGIYKENNLKRLVDKFKK 46 (377)
Q Consensus 29 ~~~~~~~~~~~A~~~~~~ 46 (377)
...+..|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334455666666666555
No 386
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=20.71 E-value=43 Score=19.23 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=16.6
Q ss_pred cccHHHHHHHHHhcccCCCCccchh
Q 042154 34 ENNLKRLVDKFKKSSDLGRFRTNTG 58 (377)
Q Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~ 58 (377)
.-+++.|+..|... .+.+||++.
T Consensus 32 ~Wd~~~A~~~F~~~--~~~IP~eAF 54 (57)
T 2jp7_A 32 NWNYEVAIKGFQSS--MNGIPREAF 54 (57)
T ss_dssp TTCSHHHHHHHHHS--TTTSCHHHH
T ss_pred CCCHHHHHHHHHHH--HcCCCHHHh
Confidence 34788999999987 344777653
No 387
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.48 E-value=1.2e+02 Score=17.39 Aligned_cols=22 Identities=9% Similarity=-0.023 Sum_probs=12.2
Q ss_pred cCCHHHHHHHHHhcCCCCCCcc
Q 042154 105 AAMFENARKVFDEMPGRNCEQT 126 (377)
Q Consensus 105 ~~~~~~A~~~~~~~~~~~~~~~ 126 (377)
.|+++.|...+-.|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4566666666666655444443
No 388
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.07 E-value=3.4e+02 Score=21.78 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 042154 276 KGFVNEGNLEEAKRWYNKSGCGMNK---AIFKLLVPFVCEKGDLDFAFNLCKRTFSERCLVDQAPLQLVVDRLAKELRVE 352 (377)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (377)
...+..|..+....+++..+..++. .-.+.|. ..++.|+.+ +.+.+++.|..++..+ .+..-++.|+.+
T Consensus 244 ~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~ 315 (337)
T 4g8k_A 244 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS 315 (337)
T ss_dssp HHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH
Confidence 3445677777777776633322221 1122232 234556553 3344466676666554 233345567766
Q ss_pred HHHHHHHh
Q 042154 353 EAKELVEL 360 (377)
Q Consensus 353 ~A~~~~~~ 360 (377)
-+.-+++.
T Consensus 316 iv~~Ll~~ 323 (337)
T 4g8k_A 316 LVKVLLSH 323 (337)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 55544443
Done!