BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042155
GNLSFYVSLFRWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAK
RLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIV
HFFVH

High Scoring Gene Products

Symbol, full name Information P value
AT4G28025 protein from Arabidopsis thaliana 4.2e-31

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042155
        (125 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006527 - symbol:AT4G28025 "AT4G28025" speci...   342  4.2e-31   1


>TAIR|locus:505006527 [details] [associations]
            symbol:AT4G28025 "AT4G28025" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            EMBL:CP002687 GO:GO:0009535 EMBL:AF360289 EMBL:AY051045
            IPI:IPI00545282 RefSeq:NP_567794.1 UniGene:At.19024
            ProteinModelPortal:Q9C5F3 SMR:Q9C5F3 STRING:Q9C5F3 PRIDE:Q9C5F3
            EnsemblPlants:AT4G28025.1 GeneID:828917 KEGG:ath:AT4G28025
            TAIR:At4g28025 InParanoid:Q9C5F3 OMA:SAPPIFF PhylomeDB:Q9C5F3
            ProtClustDB:CLSN2689653 ArrayExpress:Q9C5F3 Genevestigator:Q9C5F3
            Uniprot:Q9C5F3
        Length = 157

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 69/115 (60%), Positives = 86/115 (74%)

Query:    13 GWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSS----KKIIMVDPLEAKRLANKQMQ 68
             G RR  +  LV  R +    +VLANPN+SP          K++IMVDPLEAKRLA+KQM+
Sbjct:    39 GLRRHQDAKLVGNRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDPLEAKRLASKQME 98

Query:    69 EIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFF 123
             EI+ +EK +RRR+IEAINGAWA+IGL +GLVIE QTGK I+ QLAGYWS++VH F
Sbjct:    99 EIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYWSAVVHLF 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  11 22  0.48    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  120 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.34u 0.15s 15.49t   Elapsed:  00:00:01
  Total cpu time:  15.34u 0.15s 15.49t   Elapsed:  00:00:01
  Start:  Thu May  9 18:37:25 2013   End:  Thu May  9 18:37:26 2013

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