BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042155
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 58 EAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTG 105
E+ + + +Q +R R+ E I+G WAM+ L +EG TG
Sbjct: 71 ESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG 118
>pdb|3CBW|A Chain A, Crystal Structure Of The Ydht Protein From Bacillus
Subtilis
pdb|3CBW|B Chain B, Crystal Structure Of The Ydht Protein From Bacillus
Subtilis
Length = 353
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 35 LANPNI------SPRTNDSSKKIIMVDPLEAKRLA------NKQMQEIQAKEKFKRRRQI 82
LANP +P TND KKI+ +E KRL +QE++ + R +
Sbjct: 115 LANPAFQSGHFKTPITNDQYKKILDSSTVEGKRLNAMLSKIADGLQELENQGVPVLFRPL 174
Query: 83 EAINGAWAMIGLT 95
+NG W GLT
Sbjct: 175 HEMNGEWFWWGLT 187
>pdb|2QHA|A Chain A, From Structure To Function: Insights Into The Catalytic
Substrate Specificity And Thermostability Displayed By
Bacillus Subtilis Mannanase Bcman
pdb|2QHA|B Chain B, From Structure To Function: Insights Into The Catalytic
Substrate Specificity And Thermostability Displayed By
Bacillus Subtilis Mannanase Bcman
Length = 342
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 35 LANPNI------SPRTNDSSKKIIMVDPLEAKRLA------NKQMQEIQAKEKFKRRRQI 82
LANP +P TND KKI+ E KRL +QE++ + R +
Sbjct: 106 LANPAFQSGHFKTPITNDQYKKILDSSTAEGKRLNAMLSKIADGLQELENQGVPVLFRPL 165
Query: 83 EAINGAWAMIGLT 95
+NG W GLT
Sbjct: 166 HEMNGEWFWWGLT 178
>pdb|2WHK|A Chain A, Structure Of Bacillus Subtilis Mannanase Man26
Length = 336
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 35 LANPNI------SPRTNDSSKKIIMVDPLEAKRLA------NKQMQEIQAKEKFKRRRQI 82
LANP +P TND K I+ E KRL +QE++ + R +
Sbjct: 106 LANPAFQSGHFKTPITNDQYKNILDSATAEGKRLNAMLSKIADGLQELENQGVPVLFRPL 165
Query: 83 EAINGAWAMIGLT 95
+NG W GLT
Sbjct: 166 HEMNGEWFWWGLT 178
>pdb|2ZFB|B Chain B, Crystal Structure Of Parrot Hemoglobin (Psittacula
Krameri) At Ph 7.5
Length = 146
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 31 AFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWA 90
A VL NPN+ KK++ K L N + Q E + ++ N +
Sbjct: 51 ASAVLGNPNVRAH----GKKVLTSFGEAVKNLDNIKNTFAQLSELHCDKLHVDPEN--FR 104
Query: 91 MIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFVH 125
++G + +V+ G GK+ W +V H
Sbjct: 105 LLGDILIIVLAGHFGKDFTPDCQAAWQKLVRAVAH 139
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll
AB Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 73 KEKFKRRRQIEAINGAWAMIG 93
E F + R++E I+ WAM+G
Sbjct: 55 PETFSKNRELEVIHSRWAMLG 75
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom
Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom
Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom
Resolution
Length = 232
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 73 KEKFKRRRQIEAINGAWAMIG 93
E F + R++E I+ WAM+G
Sbjct: 55 PETFSKNRELEVIHSRWAMLG 75
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 73 KEKFKRRRQIEAINGAWAMIG 93
E F + R++E I+ WAM+G
Sbjct: 55 PETFAKNRELEVIHCRWAMLG 75
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 71 QAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII 109
+ E + Q E +NG WAM+G+ L+ E T II
Sbjct: 3 EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,311,060
Number of Sequences: 62578
Number of extensions: 107395
Number of successful extensions: 232
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 19
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)