BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042155
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P14895|ELI5_HORVU High molecular mass early light-inducible protein HV58,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 231
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 83 EAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
E ING AM+G L +E G +++Q+ G WSS + +F+
Sbjct: 130 ERINGRLAMVGFVAALSVEAARGGGLLDQV-GMWSSGLAWFL 170
>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2
Length = 1038
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 23 VTRRTKGQAFQVLANPNISPRTNDSSKKII--MVDPLEAKRLANKQMQ 68
V ++T G +Q+L PN PR D + +I + + L K++ QM+
Sbjct: 407 VLQKTMGFCYQILTEPNADPRKKDGALHMIGSLAEILLKKKIYKDQME 454
>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1
Length = 1038
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 23 VTRRTKGQAFQVLANPNISPRTNDSSKKII--MVDPLEAKRLANKQMQ 68
V ++T G +Q+L PN PR D + +I + + L K++ QM+
Sbjct: 407 VLQKTMGFCYQILTEPNADPRKKDGALHMIGSLAEILLKKKIYKDQME 454
>sp|O05512|MANB1_BACSU Mannan endo-1,4-beta-mannosidase OS=Bacillus subtilis (strain 168)
GN=gmuG PE=1 SV=2
Length = 362
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 35 LANPNI------SPRTNDSSKKIIMVDPLEAKRL------ANKQMQEIQAKEKFKRRRQI 82
LANP +P TND KKI+ +E KRL +QE++ + R +
Sbjct: 132 LANPAFQSGHFKTPITNDQYKKILDSSTVEGKRLNAMLSKIADGLQELENQGVPVLFRPL 191
Query: 83 EAINGAWAMIGLT 95
+NG W GLT
Sbjct: 192 HEMNGEWFWWGLT 204
>sp|Q0UYV9|YD156_PHANO WD repeat-containing protein SNOG_03055 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_03055
PE=3 SV=1
Length = 519
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 26 RTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAI 85
R K A + + +I+PR S K I D +AKR A + I+ ++ KR+R +A
Sbjct: 54 RVKKPAPKKIKQEDIAPRRTSSRLKGIEADSEKAKRKAEDEYVAIKEADRAKRQRVSDAF 113
Query: 86 N 86
N
Sbjct: 114 N 114
>sp|O87667|GYRB_CAMJE DNA gyrase subunit B OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=gyrB PE=3 SV=2
Length = 769
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 26 RTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQI 82
+TKG+ P +S + + K +P+EAK + NK + + +E K+ R++
Sbjct: 331 QTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKAREL 387
>sp|Q65UC1|SSTT_MANSM Serine/threonine transporter SstT OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=sstT PE=3 SV=1
Length = 413
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 88 AWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
AWA IGL + L +T KN++ A S IVHF +
Sbjct: 159 AWA-IGLGITLRYASETTKNVMNDFAEAVSKIVHFII 194
>sp|Q5LWK0|SECA1_RUEPO Protein translocase subunit SecA 1 OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=secA1 PE=3 SV=1
Length = 901
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 35 LANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGL 94
L NIS K ++ P L K + + E + +R E + +A +G+
Sbjct: 96 LHQGNISEMKTGEGKTLVATFPAYLNALTGKGVHVVTVNE-YLAKRDSEWMGKVFAALGM 154
Query: 95 TVGLVIEGQTGKNIIEQLAGYWSSIVH 121
T G++ GQ E++A Y S I +
Sbjct: 155 TTGVIWSGQPDA---EKMAAYESDITY 178
>sp|Q0BUI2|SECA_GRABC Protein translocase subunit SecA OS=Granulibacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1) GN=secA PE=3 SV=2
Length = 917
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 34 VLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIG 93
VL + I+ K ++ P+ L K + + + + RR E + ++ +G
Sbjct: 93 VLHDGKIAEMRTGEGKTLVATLPVYLNALTGKGVHVVTVND-YLARRDAETMGQLYSFLG 151
Query: 94 LTVGLVIEGQTGKNIIEQLAGYWSSIVH 121
L+ G+V+ GQ +E+ A Y + I +
Sbjct: 152 LSTGIVVHGQEE---LERRAAYHADITY 176
>sp|P55821|STMN2_MOUSE Stathmin-2 OS=Mus musculus GN=Stmn2 PE=1 SV=1
Length = 179
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 3 LSFYVSLFRWGWRR-------DLNVSLVTRRTKGQAFQVLANP----NISPRTNDSSKK 50
LS S F R D+ V + +R GQAF+++ P + +PRT S KK
Sbjct: 18 LSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKK 76
>sp|Q93045|STMN2_HUMAN Stathmin-2 OS=Homo sapiens GN=STMN2 PE=1 SV=3
Length = 179
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 3 LSFYVSLFRWGWRR-------DLNVSLVTRRTKGQAFQVLANP----NISPRTNDSSKK 50
LS S F R D+ V + +R GQAF+++ P + +PRT S KK
Sbjct: 18 LSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKK 76
>sp|P21818|STMN2_RAT Stathmin-2 OS=Rattus norvegicus GN=Stmn2 PE=1 SV=2
Length = 179
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 3 LSFYVSLFRWGWRR-------DLNVSLVTRRTKGQAFQVLANP----NISPRTNDSSKK 50
LS S F R D+ V + +R GQAF+++ P + +PRT S KK
Sbjct: 18 LSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKK 76
>sp|Q90987|STMN2_CHICK Stathmin-2 OS=Gallus gallus GN=STMN2 PE=2 SV=1
Length = 179
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 3 LSFYVSLFRWGWRR-------DLNVSLVTRRTKGQAFQVLANP----NISPRTNDSSKK 50
LS S F R D+ V + +R GQAF+++ P + +PRT S KK
Sbjct: 18 LSLICSCFYPEPRNMNIYKYDDMEVKQINKRASGQAFELILKPPSPVSEAPRTLASPKK 76
>sp|Q05709|VANH_ENTFC D-specific alpha-keto acid dehydrogenase OS=Enterococcus faecium
GN=vanH PE=1 SV=1
Length = 322
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 94 LTVGLVIEGQTGKNIIEQLAGYWSSIVHF 122
+TVG+V GQ GK +IE+L G+ ++ +
Sbjct: 147 MTVGVVGTGQIGKAVIERLRGFGCKVLAY 175
>sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=Pisum sativum PE=2
SV=1
Length = 196
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 83 EAINGAWAMIGLTVGLVIEGQTGKNIIEQLAG 114
E ING AMIG + +E G+ + EQL+G
Sbjct: 99 ERINGRLAMIGFVAAMGVEIAKGQGLSEQLSG 130
>sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, chloroplastic
OS=Dunaliella bardawil GN=CBR PE=1 SV=1
Length = 172
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 83 EAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124
E ING AM+G L E TG++++ QL + I FV
Sbjct: 78 EIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIALTFV 119
>sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii
GN=Lhcb4 PE=1 SV=3
Length = 280
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 78 RRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIE 110
R R+ E I+G WAM+ LV E TG + +E
Sbjct: 132 RFRECELIHGRWAMLACLGALVAEATTGVSWVE 164
>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chloroplastic
OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1
Length = 276
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 58 EAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTG 105
E+ + Q +R R+ E I+G WAM+G + +E TG
Sbjct: 116 ESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTG 163
>sp|A4WW84|SECA_RHOS5 Protein translocase subunit SecA OS=Rhodobacter sphaeroides (strain
ATCC 17025 / ATH 2.4.3) GN=secA PE=3 SV=1
Length = 906
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 11 RWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEI 70
R G RR L + + G F L NI+ K ++ P LA K + +
Sbjct: 75 REGARRALGLRAFDVQLMGGIF--LHQGNIAEMKTGEGKTLVATFPAYLNALAGKGVHVV 132
Query: 71 QAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVH 121
+ + +R E + +A +GLT G+V Q+ + E+ A Y + I +
Sbjct: 133 TVND-YLAKRDSEWMGKVYAQLGLTTGVVYPFQSEE---EKKAAYRADITY 179
>sp|P14273|CB2_CHLRE Chlorophyll a-b binding protein of LHCII type I, chloroplastic
OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1
Length = 253
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 73 KEKFKRRRQIEAINGAWAMIG 93
E FKR R++E I+ WAM+G
Sbjct: 76 PETFKRYRELELIHARWAMLG 96
>sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII type III, chloroplastic
OS=Hordeum vulgare GN=LHBC PE=2 SV=1
Length = 268
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 73 KEKFKRRRQIEAINGAWAMIG 93
E F R R +E I+G WAM+G
Sbjct: 89 PEAFARNRALEVIHGRWAMLG 109
>sp|A8LQ60|SECA_DINSH Protein translocase subunit SecA OS=Dinoroseobacter shibae (strain
DFL 12) GN=secA PE=3 SV=1
Length = 908
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 11 RWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQMQEI 70
R G RR L + + G F L NIS K ++ P L K + +
Sbjct: 74 REGARRALGLRAFDTQLMGGIF--LHQGNISEMKTGEGKTLVATLPAYLNALTGKGVHIV 131
Query: 71 QAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVH 121
+ + RR E + +A +G+T G+V+ Q E+ A Y + I +
Sbjct: 132 TVND-YLARRDAEWMGKVYAQLGMTCGVVVPFQQED---EKHAAYAADITY 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,902,039
Number of Sequences: 539616
Number of extensions: 1410741
Number of successful extensions: 4725
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 4704
Number of HSP's gapped (non-prelim): 57
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)