Query 042155
Match_columns 125
No_of_seqs 145 out of 466
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 03:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02337 putative high light i 99.4 5.2E-14 1.1E-18 85.7 3.0 32 79-110 2-33 (35)
2 PLN00014 light-harvesting-like 99.4 2.4E-13 5.2E-18 111.4 4.9 45 80-124 160-204 (250)
3 PLN00084 photosystem II subuni 99.1 1.3E-10 2.9E-15 92.8 4.5 38 77-114 133-171 (214)
4 PF00504 Chloroa_b-bind: Chlor 98.9 1.8E-09 4E-14 80.3 3.9 43 53-106 14-56 (156)
5 PLN00147 light-harvesting comp 98.8 6E-09 1.3E-13 85.8 5.8 59 50-118 179-239 (252)
6 PLN00099 light-harvesting comp 98.8 9.9E-09 2.1E-13 84.1 5.4 59 50-118 166-226 (243)
7 PLN00098 light-harvesting comp 98.7 1.6E-08 3.5E-13 83.8 5.6 59 50-117 193-253 (267)
8 PLN00089 fucoxanthin-chlorophy 98.7 1E-08 2.3E-13 82.1 3.2 52 49-109 154-207 (209)
9 PLN00025 photosystem II light 98.7 2.1E-08 4.5E-13 83.0 5.0 59 50-118 186-245 (262)
10 PLN00048 photosystem I light h 98.7 2.4E-08 5.2E-13 82.6 4.5 55 54-118 195-249 (262)
11 PLN00100 light-harvesting comp 98.7 1.9E-08 4.2E-13 82.7 3.8 49 54-117 150-198 (246)
12 PLN00097 photosystem I light h 98.6 6E-08 1.3E-12 79.7 5.3 55 54-118 182-236 (244)
13 PLN00101 Photosystem I light-h 98.6 3.1E-08 6.7E-13 81.6 3.3 51 54-118 189-239 (250)
14 PLN00187 photosystem II light- 98.6 8.8E-08 1.9E-12 80.2 5.4 58 50-117 214-273 (286)
15 PLN00171 photosystem light-ha 98.6 8.9E-08 1.9E-12 81.5 5.4 55 54-118 258-312 (324)
16 PF00504 Chloroa_b-bind: Chlor 98.6 4.1E-08 8.9E-13 73.1 2.9 43 49-101 111-155 (156)
17 PLN00101 Photosystem I light-h 98.4 1.4E-07 3.1E-12 77.6 2.7 49 51-109 71-121 (250)
18 PLN00098 light-harvesting comp 98.4 2.3E-07 5.1E-12 77.0 3.6 50 50-109 79-130 (267)
19 PLN00048 photosystem I light h 98.4 1.7E-07 3.6E-12 77.6 2.5 57 49-110 58-116 (262)
20 PLN00120 fucoxanthin-chlorophy 98.3 5.4E-07 1.2E-11 71.9 4.0 28 80-107 169-196 (202)
21 PLN00097 photosystem I light h 98.3 3.8E-07 8.1E-12 75.0 2.4 50 49-108 60-111 (244)
22 PLN00187 photosystem II light- 98.3 4.7E-07 1E-11 75.9 2.6 33 74-106 128-160 (286)
23 PLN00170 photosystem II light- 98.2 6.1E-07 1.3E-11 74.2 2.7 51 50-110 74-126 (255)
24 PLN00170 photosystem II light- 98.2 8E-07 1.7E-11 73.5 3.2 57 54-113 197-254 (255)
25 PLN00025 photosystem II light 98.2 6.3E-07 1.4E-11 74.3 2.5 45 54-108 76-120 (262)
26 PLN00147 light-harvesting comp 98.2 1.1E-06 2.5E-11 72.4 2.9 49 49-107 61-111 (252)
27 PLN00089 fucoxanthin-chlorophy 98.1 2.2E-06 4.8E-11 68.7 3.8 42 54-104 59-100 (209)
28 PLN00171 photosystem light-ha 98.1 2E-06 4.4E-11 73.3 2.7 44 54-107 133-176 (324)
29 PLN00099 light-harvesting comp 98.0 4.2E-06 9.2E-11 68.7 3.6 46 49-104 60-107 (243)
30 PLN00100 light-harvesting comp 98.0 3.2E-06 6.9E-11 69.7 2.7 41 54-104 58-98 (246)
31 PLN00120 fucoxanthin-chlorophy 97.4 5E-05 1.1E-09 60.7 0.3 40 54-102 47-87 (202)
32 PLN02449 ferrochelatase 90.9 0.1 2.3E-06 46.8 1.2 23 89-111 463-485 (485)
33 KOG2942 Uncharacterized conser 84.2 0.075 1.6E-06 46.0 -3.7 43 65-107 2-48 (361)
34 COG3087 FtsN Cell division pro 47.8 8.8 0.00019 32.5 0.9 23 76-98 198-220 (264)
35 PHA02933 unchracterized protei 44.4 36 0.00078 26.7 3.8 36 83-119 91-128 (149)
36 cd07601 BAR_APPL The Bin/Amphi 32.7 1.3E+02 0.0028 24.4 5.4 32 90-121 180-212 (215)
37 PHA02711 Toll/IL-receptor-like 30.1 57 0.0012 26.6 2.9 23 88-111 134-156 (190)
38 PF12911 OppC_N: N-terminal TM 24.7 59 0.0013 19.8 1.8 18 83-100 11-28 (56)
39 PF13074 DUF3938: Protein of u 23.1 29 0.00063 25.2 0.1 26 89-114 42-67 (102)
40 PRK13848 conjugal transfer pro 22.7 1.6E+02 0.0034 21.8 3.8 28 64-92 9-36 (98)
41 cd07602 BAR_RhoGAP_OPHN1-like 22.1 1.4E+02 0.003 24.2 3.9 26 90-115 181-206 (207)
No 1
>PHA02337 putative high light inducible protein
Probab=99.45 E-value=5.2e-14 Score=85.66 Aligned_cols=32 Identities=31% Similarity=0.350 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhCchHHH
Q 042155 79 RRQIEAINGAWAMIGLTVGLVIEGQTGKNIIE 110 (125)
Q Consensus 79 ~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~ 110 (125)
++++|+||||+|||||++++++|+.||++|+.
T Consensus 2 t~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG 33 (35)
T PHA02337 2 TPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG 33 (35)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 46799999999999999999999999999863
No 2
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.40 E-value=2.4e-13 Score=111.45 Aligned_cols=45 Identities=22% Similarity=0.550 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHhhhhc
Q 042155 80 RQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 124 (125)
Q Consensus 80 ~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~~~~~~~ 124 (125)
.++|++|||+|||||++++++|++||+++++|++++++.++.|++
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k~llfv~ 204 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCKTLLFVT 204 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhHHHHHHH
Confidence 569999999999999999999999999999999999999988764
No 3
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=99.07 E-value=1.3e-10 Score=92.81 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=35.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHH
Q 042155 77 KRRRQIEAINGAWAMIGLTVGLVIEGQT-GKNIIEQLAG 114 (125)
Q Consensus 77 ~~~~~~E~~NGR~AMiGf~~~l~~E~~T-G~~il~Ql~~ 114 (125)
..++..|+||||+||+||+++++.|.+| |+|+++|+..
T Consensus 133 rEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 133 REQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred HhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 4567889999999999999999999999 9999999864
No 4
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.87 E-value=1.8e-09 Score=80.31 Aligned_cols=43 Identities=33% Similarity=0.349 Sum_probs=37.9
Q ss_pred eeCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCc
Q 042155 53 MVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGK 106 (125)
Q Consensus 53 ~~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~ 106 (125)
.|||+++.... .+++.|++|++|||+||+|++..++.|+.++.
T Consensus 14 gfDPlgl~~~~-----------~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 14 GFDPLGLSSDP-----------DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp SSSTTTTTTSH-----------HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred CCChhhcccch-----------hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 39999998643 56888999999999999999999999999875
No 5
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=98.83 E-value=6e-09 Score=85.77 Aligned_cols=59 Identities=20% Similarity=0.119 Sum_probs=47.2
Q ss_pred ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155 50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS 118 (125)
Q Consensus 50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~ 118 (125)
.|.. |||++... +.+++ ++.+..|+.||||||++++..++.|.+||+++++++..++..
T Consensus 179 yPGd~~FDPlGl~~-d~~~~---------~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hlad 239 (252)
T PLN00147 179 YPGGPLFNPLGLAK-DIENA---------HDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSD 239 (252)
T ss_pred CcccccCCccccCC-CHHHH---------HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcC
Confidence 4554 89999863 22222 444567999999999999999999999999999999887764
No 6
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=98.77 E-value=9.9e-09 Score=84.05 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=44.7
Q ss_pred ccee-eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhhCchHHHHHHHHHHH
Q 042155 50 KIIM-VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIE-GQTGKNIIEQLAGYWSS 118 (125)
Q Consensus 50 ~~~~-~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E-~~TG~~il~Ql~~~~~~ 118 (125)
.|.. |||++... +++++ ++.+..|+.|||+||++|+..++.| .+||++++++|..++..
T Consensus 166 yPGd~FDPlGl~k-d~~~~---------~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hlad 226 (243)
T PLN00099 166 YPGGAFDPLGYSK-DPKKF---------EEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 226 (243)
T ss_pred CCCCcCCcccccC-CHHHH---------HHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcC
Confidence 3443 89998753 33333 3344569999999999999999998 57999999999887653
No 7
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=98.73 E-value=1.6e-08 Score=83.84 Aligned_cols=59 Identities=24% Similarity=0.111 Sum_probs=46.8
Q ss_pred ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155 50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS 117 (125)
Q Consensus 50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~ 117 (125)
-|.. |||+...+.+.++. ++.+..|+.|||+||++++..++.+.+||++++++|..++.
T Consensus 193 yPGg~~FDPlgl~~~d~~~~---------~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hla 253 (267)
T PLN00098 193 YPGGLWFDPMMWGRGSPEPV---------MVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLA 253 (267)
T ss_pred CCCCccCCcccCCCCCHHHH---------HHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhc
Confidence 3554 89999865444444 33345699999999999999999999999999999987664
No 8
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=98.69 E-value=1e-08 Score=82.08 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=40.8
Q ss_pred Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155 49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII 109 (125)
Q Consensus 49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il 109 (125)
+.|.+ +||++..+.+.+++ ++.+..|+.||||||+|++..++.|.+||++++
T Consensus 154 ~~PGd~gfdplgl~~~d~~~~---------~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 154 RTPGDFGFDLLALYPKDAAKM---------EKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCcCccccccCCCCHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 44555 79998765444444 344567999999999999999999999999875
No 9
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=98.69 E-value=2.1e-08 Score=83.02 Aligned_cols=59 Identities=25% Similarity=0.164 Sum_probs=46.1
Q ss_pred ccee-eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155 50 KIIM-VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS 118 (125)
Q Consensus 50 ~~~~-~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~ 118 (125)
-|.. |||+.... +.+++ ++.+..|+.||||||++++..++.|.+||++++++|..++..
T Consensus 186 yPG~~FDPlGl~~-d~~~~---------~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hlad 245 (262)
T PLN00025 186 YPGGSFDPLGLAD-DPDTF---------AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 245 (262)
T ss_pred CCcccCCccccCC-CHHHH---------HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcC
Confidence 3443 89998753 23333 344566999999999999999999999999999999877653
No 10
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.66 E-value=2.4e-08 Score=82.59 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=45.0
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS 118 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~ 118 (125)
|||+.... +.++ +++.+..|+.||||||++++..++.|.+||++++++|..++..
T Consensus 195 fDPlGl~~-~~e~---------~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hlad 249 (262)
T PLN00048 195 FNPLGFGK-DEKS---------MKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLAD 249 (262)
T ss_pred cCcccccc-chHH---------HHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcC
Confidence 89999854 2222 3455667999999999999999999999999999999877653
No 11
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=98.66 E-value=1.9e-08 Score=82.71 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=41.4
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS 117 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~ 117 (125)
|||++... ++| +..|+.|||+||++|+..++.+.+||++++++|..++.
T Consensus 150 FDPLGl~~---~~~------------K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hla 198 (246)
T PLN00100 150 FDPTGMDS---PEM------------KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMA 198 (246)
T ss_pred CCcccccH---HHH------------HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhcc
Confidence 89998752 222 35699999999999999999999999999999987654
No 12
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=98.60 E-value=6e-08 Score=79.66 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=45.0
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS 118 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~ 118 (125)
|||+.... +.++ +++.+..|+.|||+||++++..++.+..||++++++|..++..
T Consensus 182 FDPlgl~~-d~~~---------~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~Hlad 236 (244)
T PLN00097 182 FDKFGWAK-DEKK---------AAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLAD 236 (244)
T ss_pred CCccccCC-CHHH---------HHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcC
Confidence 99999753 2222 3455677999999999999999999999999999999887653
No 13
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.59 E-value=3.1e-08 Score=81.57 Aligned_cols=51 Identities=27% Similarity=0.308 Sum_probs=42.8
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS 118 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~ 118 (125)
||||++... +++ +..|+-|||+||++|+..++.+.+||++++++|..++..
T Consensus 189 FDPLgl~~~--~~~------------k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hlad 239 (250)
T PLN00101 189 FNPLNFAPT--EEA------------KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 239 (250)
T ss_pred cCccCCCcc--HHH------------HHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcC
Confidence 999998642 222 345999999999999999999999999999999887754
No 14
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=98.57 E-value=8.8e-08 Score=80.25 Aligned_cols=58 Identities=21% Similarity=0.091 Sum_probs=46.0
Q ss_pred ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155 50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS 117 (125)
Q Consensus 50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~ 117 (125)
-|.. |||++... +.++ +++.+..|+.||||||++++..++.+.+||+++++.+..++.
T Consensus 214 yPGg~~FDPlGl~~-d~e~---------~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hla 273 (286)
T PLN00187 214 YPGGKFFDPLGLAA-DPEK---------KETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 273 (286)
T ss_pred CCccccccccccCC-CHHH---------HHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 3544 89999853 2222 344567799999999999999999999999999999987765
No 15
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=98.57 E-value=8.9e-08 Score=81.49 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=44.3
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS 118 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~ 118 (125)
|||++... +.+++ ++.+..|+.|||+||++++..++.|.+||+++++++..++..
T Consensus 258 FDPLGl~~-d~~~~---------~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hlad 312 (324)
T PLN00171 258 FDPLGLSK-DPVAF---------EDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSD 312 (324)
T ss_pred CCccccCC-CHHHH---------HHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcC
Confidence 89998753 22233 344566999999999999999999999999999999877653
No 16
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.56 E-value=4.1e-08 Score=73.06 Aligned_cols=43 Identities=21% Similarity=0.120 Sum_probs=32.2
Q ss_pred Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 042155 49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIE 101 (125)
Q Consensus 49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E 101 (125)
..|.. +||+... .+.++. ++.+.+|++|||+|||||+..++.|
T Consensus 111 ~~pG~~~~dplgl~-~~~~~~---------~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 111 RYPGDLGFDPLGLA-KDPEEK---------EFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp SSSSSSSSSTSSTS-SSCHSH---------HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccchhhhh-hhhhhh---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444 7999776 333333 5667889999999999999998887
No 17
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.41 E-value=1.4e-07 Score=77.64 Aligned_cols=49 Identities=37% Similarity=0.368 Sum_probs=39.2
Q ss_pred cee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155 51 IIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII 109 (125)
Q Consensus 51 ~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il 109 (125)
|.+ |||+..... . +.+++.+.+|++||||||+|++..++.|.+|+.+++
T Consensus 71 PGD~GFDPlGl~~d-~---------~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 71 PGDNGFDPLGLAED-P---------ENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCccCCCccccCCC-H---------HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 444 899988531 1 224667889999999999999999999999988765
No 18
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=98.39 E-value=2.3e-07 Score=77.01 Aligned_cols=50 Identities=26% Similarity=0.208 Sum_probs=39.4
Q ss_pred ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155 50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII 109 (125)
Q Consensus 50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il 109 (125)
-|.+ |||+..... .+.+++.+++|++||||||+|++..++.|.+++.+++
T Consensus 79 ~pGD~GFDPlgl~~~----------~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~ 130 (267)
T PLN00098 79 LPGDFGFDPLGLGSD----------PELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI 130 (267)
T ss_pred CCCCCCcCccccCCC----------HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence 3554 899998531 1234677899999999999999999999999876654
No 19
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=98.38 E-value=1.7e-07 Score=77.59 Aligned_cols=57 Identities=21% Similarity=0.102 Sum_probs=39.5
Q ss_pred Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHH
Q 042155 49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIE 110 (125)
Q Consensus 49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~ 110 (125)
.-|.+ |||+.... .+.. ....+.++.+++|++||||||+|++..++.|++++.+++.
T Consensus 58 ~lPGD~GFDPlGL~~---p~~~--~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 58 TLPGDFGFDPLGLSD---PEGA--GGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred CCCCccCCCccccCC---cccc--ccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 34444 89998851 1100 0011224556899999999999999999999999877754
No 20
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=98.32 E-value=5.4e-07 Score=71.87 Aligned_cols=28 Identities=29% Similarity=0.213 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCch
Q 042155 80 RQIEAINGAWAMIGLTVGLVIEGQTGKN 107 (125)
Q Consensus 80 ~~~E~~NGR~AMiGf~~~l~~E~~TG~~ 107 (125)
+..|+.|||+||||+++.++.|.++|.-
T Consensus 169 ~~~EL~NGRLAMiai~G~~~qe~l~g~~ 196 (202)
T PLN00120 169 RAIELNQGRAAQMGILALMVHEQLGVEL 196 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4679999999999999999999999963
No 21
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=98.28 E-value=3.8e-07 Score=75.02 Aligned_cols=50 Identities=28% Similarity=0.282 Sum_probs=38.9
Q ss_pred Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchH
Q 042155 49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNI 108 (125)
Q Consensus 49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~i 108 (125)
.-|.+ |||+.... + .+.+++.+++|++||||||+|++..++.|++++.++
T Consensus 60 ~~pGD~GfDPlGl~~-~---------~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 60 SLPCDYGFDPLNLGA-D---------PEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCccccCc-C---------HHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 34444 89998752 1 123467789999999999999999999999987654
No 22
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=98.27 E-value=4.7e-07 Score=75.95 Aligned_cols=33 Identities=36% Similarity=0.543 Sum_probs=29.8
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCc
Q 042155 74 EKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGK 106 (125)
Q Consensus 74 ~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~ 106 (125)
..+++.+++|++||||||+|++..++.|+++|.
T Consensus 128 f~l~r~REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 128 FGLQRFRECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred hHHHHHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 347889999999999999999999999998764
No 23
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=98.24 E-value=6.1e-07 Score=74.24 Aligned_cols=51 Identities=27% Similarity=0.281 Sum_probs=39.6
Q ss_pred ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHH
Q 042155 50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIE 110 (125)
Q Consensus 50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~ 110 (125)
.|.+ |||+.... +.+ .+++.+++|++||||||+|++..++.|.+||..+++
T Consensus 74 ~PGd~GFDPlgl~~-d~e---------~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 74 LPGDYGFDPLGLGK-DPA---------FLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred CCCCCCcCccccCC-CHH---------HHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 3444 89998742 122 246667889999999999999999999999987664
No 24
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=98.23 E-value=8e-07 Score=73.52 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=38.5
Q ss_pred eCcchhhhhhHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQ-AKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLA 113 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~-~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~ 113 (125)
||||+...... ...|. ..+++++.+..|+-|||+||++|+..++ ++.||++.++.|+
T Consensus 197 FDPLGl~~~~~--~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~-Qa~~g~~p~~~l~ 254 (255)
T PLN00170 197 FDPLGLAGTVK--DGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYF-EAGQGKTPLGALG 254 (255)
T ss_pred cCccccccccc--cccccCCHHHHHHHHHHHHhhhHHHHHHHHhHhe-eeccCCCchhhhc
Confidence 99999764211 00000 1123355667799999999999995555 5589999998874
No 25
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=98.22 E-value=6.3e-07 Score=74.31 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=36.2
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNI 108 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~i 108 (125)
|||+.... +. +.+++.+++|++||||||+|++..++.|.+++.++
T Consensus 76 fDPlGls~-dp---------~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 76 WDTAGLSA-DP---------ETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred CCcccccc-CH---------HHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 89998752 11 23467788999999999999999999999986554
No 26
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=98.17 E-value=1.1e-06 Score=72.40 Aligned_cols=49 Identities=22% Similarity=0.152 Sum_probs=37.5
Q ss_pred Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCch
Q 042155 49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKN 107 (125)
Q Consensus 49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~ 107 (125)
.-|.+ |||+.... +. +.+++.+++|+.||||||+|++..++.|.++..+
T Consensus 61 ~~pGD~GFDPlgl~~-d~---------~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 61 TLAGDFGFDPLGLGE-DP---------ESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCccCCCcccccC-CH---------HHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 33444 89998742 11 1246778899999999999999999999987654
No 27
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=98.13 E-value=2.2e-06 Score=68.75 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=34.5
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT 104 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T 104 (125)
|||+.+.....+ .+++.|.+|+.|||+||++++..++.|.++
T Consensus 59 fDPlgl~~~~~~---------~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~ 100 (209)
T PLN00089 59 FDPLGLAEKVEE---------FLPWFRESELKHGRAAMLAVAGFIAPDFVR 100 (209)
T ss_pred cCCccCCCCCHH---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 899997653222 246778999999999999999999999876
No 28
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=98.08 E-value=2e-06 Score=73.31 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=35.7
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCch
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKN 107 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~ 107 (125)
|||+.+.. + .+.+++.+++|+.||||||+|++..++.|++++.+
T Consensus 133 FDPLGL~~-d---------p~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g 176 (324)
T PLN00171 133 FDIAGLGK-D---------PVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFG 176 (324)
T ss_pred CCcccccc-C---------HHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCC
Confidence 89999754 1 12357788999999999999999999999977543
No 29
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=98.03 E-value=4.2e-06 Score=68.70 Aligned_cols=46 Identities=28% Similarity=0.339 Sum_probs=35.7
Q ss_pred Cccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155 49 KKIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT 104 (125)
Q Consensus 49 k~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T 104 (125)
.-|.+ |||+.... . .+.+++.+++|++||||||+|++..++.|+++
T Consensus 60 ~~pgd~GfDPlgls~-~---------~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~ 107 (243)
T PLN00099 60 SAPGDFGFDPLRLGE-V---------PENLERYKESELIHCRWAMLAVPGILVPEALG 107 (243)
T ss_pred CCCcccCCCcccccc-C---------HHHHHHHHHHhccCCcHHHHHHhhHHHHHHhc
Confidence 34443 89999843 1 12356778999999999999999999999864
No 30
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=98.02 E-value=3.2e-06 Score=69.74 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=33.5
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT 104 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T 104 (125)
|||+..... . +.+++.+++|++||||||+|++..++.|+++
T Consensus 58 FDPlgl~~~-~---------~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 58 FDPLRLGAN-P---------ETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCccccCCC-H---------HHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 899998431 1 2356778999999999999999999999864
No 31
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=97.35 E-value=5e-05 Score=60.69 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=31.7
Q ss_pred eCcchhhhh-hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 042155 54 VDPLEAKRL-ANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEG 102 (125)
Q Consensus 54 ~dple~k~~-~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~ 102 (125)
|||+..... ..++ +++.+.+|+.||||||++++..++.|.
T Consensus 47 fDPlgl~~~~~~~~---------~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 47 FDPLGLVDDGDQEK---------FDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCccCCCCCHHH---------HHHHHHHHhhcccHHHHhhccceeecc
Confidence 899997642 2222 356778999999999999999999995
No 32
>PLN02449 ferrochelatase
Probab=90.94 E-value=0.1 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhCchHHHH
Q 042155 89 WAMIGLTVGLVIEGQTGKNIIEQ 111 (125)
Q Consensus 89 ~AMiGf~~~l~~E~~TG~~il~Q 111 (125)
+||+||++.++.|++||+|++++
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999998763
No 33
>KOG2942 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.16 E-value=0.075 Score=45.98 Aligned_cols=43 Identities=60% Similarity=0.920 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHHHHhhCch
Q 042155 65 KQMQEIQAKEKFKRRRQIEAINGAWAMIG----LTVGLVIEGQTGKN 107 (125)
Q Consensus 65 k~m~~~~~k~k~~~~~~~E~~NGR~AMiG----f~~~l~~E~~TG~~ 107 (125)
++|+|++.+++-++++.-+.+||-||.+| ..++++.|.+||+.
T Consensus 2 r~~eE~~~R~~q~~r~egca~n~~~~~tGn~~n~pIG~v~~af~~K~ 48 (361)
T KOG2942|consen 2 RQMEEIKGREKQQRRREGCAINGAWAITGNYTNLPIGLVIEAFTGKV 48 (361)
T ss_pred CcccccCCcccccchhccccccchHhhhcccccccceeeeecccccc
Confidence 45777777777778889999999999999 99999999999983
No 34
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=47.79 E-value=8.8 Score=32.52 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=19.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 042155 76 FKRRRQIEAINGAWAMIGLTVGL 98 (125)
Q Consensus 76 ~~~~~~~E~~NGR~AMiGf~~~l 98 (125)
|+...++|..-+||||+||=+=+
T Consensus 198 Fk~~~qAE~~rA~LAmlG~sskI 220 (264)
T COG3087 198 FKTAEQAESVRAQLAMLGISSKI 220 (264)
T ss_pred cccHHHHHHHHHHHHhcccccee
Confidence 56678999999999999996543
No 35
>PHA02933 unchracterized protein; Provisional
Probab=44.44 E-value=36 Score=26.71 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=24.1
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Q 042155 83 EAINGA--WAMIGLTVGLVIEGQTGKNIIEQLAGYWSSI 119 (125)
Q Consensus 83 E~~NGR--~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~~ 119 (125)
|+.|+= .||||+. |.+.|.+.++.+.+-....+..+
T Consensus 91 ~i~~~Es~kalIGL~-A~vaEyWG~e~~~~~s~~~L~~~ 128 (149)
T PHA02933 91 EVHDQESLFATIGIC-AKITEHWGYKKISESRFQSLGNI 128 (149)
T ss_pred hhccchhHHHHHHHH-HHHHHHcCcCCCchHHHHHHHHH
Confidence 444443 6999999 56689999998765544444433
No 36
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.68 E-value=1.3e+02 Score=24.41 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhCchHHH-HHHHHHHHHhh
Q 042155 90 AMIGLTVGLVIEGQTGKNIIE-QLAGYWSSIVH 121 (125)
Q Consensus 90 AMiGf~~~l~~E~~TG~~il~-Ql~~~~~~~~~ 121 (125)
+|+||+-+..+-+--|..++. |+..|+..+..
T Consensus 180 ~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~~ 212 (215)
T cd07601 180 PMIGYLQAQIAFFKMGPEMFTRQTEEFLSDINT 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999997 99999887653
No 37
>PHA02711 Toll/IL-receptor-like protein; Provisional
Probab=30.15 E-value=57 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhCchHHHH
Q 042155 88 AWAMIGLTVGLVIEGQTGKNIIEQ 111 (125)
Q Consensus 88 R~AMiGf~~~l~~E~~TG~~il~Q 111 (125)
.+||||+. |.++|.+-|++.+..
T Consensus 134 ~i~lIGLc-a~vaEyWg~~~~p~~ 156 (190)
T PHA02711 134 CISMIGLC-ACVVDVWRKEKLFSR 156 (190)
T ss_pred HHHHHHHH-HHHHHHHCCCCCCCc
Confidence 79999998 788899999885433
No 38
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=24.75 E-value=59 Score=19.82 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042155 83 EAINGAWAMIGLTVGLVI 100 (125)
Q Consensus 83 E~~NGR~AMiGf~~~l~~ 100 (125)
+...-|+||+|++..++.
T Consensus 11 ~f~~nk~a~~gl~il~~~ 28 (56)
T PF12911_consen 11 RFRRNKLAVIGLIILLIL 28 (56)
T ss_pred HHHhCchHHHHHHHHHHH
Confidence 444557899998765443
No 39
>PF13074 DUF3938: Protein of unknown function (DUF3938)
Probab=23.06 E-value=29 Score=25.17 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhCchHHHHHHH
Q 042155 89 WAMIGLTVGLVIEGQTGKNIIEQLAG 114 (125)
Q Consensus 89 ~AMiGf~~~l~~E~~TG~~il~Ql~~ 114 (125)
+.|||++.+.+.+-.|...++-|+.+
T Consensus 42 ltmigivggcisysmtnytlplqlss 67 (102)
T PF13074_consen 42 LTMIGIVGGCISYSMTNYTLPLQLSS 67 (102)
T ss_pred HHHHHHhcceeeeeeeccccchhHHH
Confidence 68999999999999999988877754
No 40
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=22.66 E-value=1.6e+02 Score=21.76 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 042155 64 NKQMQEIQAKEKFKRRRQIEAINGAWAMI 92 (125)
Q Consensus 64 ak~m~~~~~k~k~~~~~~~E~~NGR~AMi 92 (125)
..++..++.+.+.-..+.+|.+ ||+||=
T Consensus 9 ~~eI~kLqe~lk~~e~keAERi-gRiAlK 36 (98)
T PRK13848 9 REEIAKLQEQLKQAETREAERI-GRIALK 36 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3455566666666667888987 788874
No 41
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=22.13 E-value=1.4e+02 Score=24.16 Aligned_cols=26 Identities=12% Similarity=0.355 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhCchHHHHHHHH
Q 042155 90 AMIGLTVGLVIEGQTGKNIIEQLAGY 115 (125)
Q Consensus 90 AMiGf~~~l~~E~~TG~~il~Ql~~~ 115 (125)
+|+||+-+.++-+-.|..++.++..|
T Consensus 181 ~ll~~m~a~~tff~qG~el~~d~~py 206 (207)
T cd07602 181 TLLSFMYGWLTFYHQGHEVAKDFKPY 206 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 79999999999999999999887654
Done!