Query 042155
Match_columns 125
No_of_seqs 145 out of 466
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:18:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 99.0 3.7E-10 1.3E-14 90.1 5.4 54 54-117 161-214 (232)
2 3pl9_A Chlorophyll A-B binding 99.0 5.4E-10 1.8E-14 90.4 5.0 55 54-118 178-232 (243)
3 2wsc_3 LHCA3, type II chloroph 98.7 5.8E-10 2E-14 91.4 -2.4 58 50-117 203-262 (276)
4 2wsc_2 LHCA2, type II chloroph 98.6 6.3E-10 2.1E-14 90.9 -5.3 51 54-113 201-251 (269)
5 3pl9_A Chlorophyll A-B binding 98.4 1.6E-07 5.4E-12 76.0 3.5 37 70-106 83-119 (243)
6 2wsc_1 AT3G54890, LHCA1; photo 98.4 4.3E-09 1.5E-13 84.7 -6.2 52 53-114 171-223 (241)
7 2wsc_4 Chlorophyll A-B binding 98.3 1.8E-08 6.2E-13 81.4 -3.0 49 54-117 189-237 (251)
8 2wsc_4 Chlorophyll A-B binding 98.3 1.6E-08 5.4E-13 81.7 -3.9 46 54-109 76-121 (251)
9 2bhw_A Chlorophyll A-B binding 98.3 4.5E-07 1.6E-11 72.3 3.7 42 53-104 45-86 (232)
10 2wsc_2 LHCA2, type II chloroph 98.1 3.3E-07 1.1E-11 74.8 -0.5 45 54-108 87-131 (269)
11 2wsc_3 LHCA3, type II chloroph 97.9 8.1E-08 2.8E-12 78.7 -7.5 33 77-109 97-129 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 97.4 5.9E-06 2E-10 66.5 -3.3 41 54-104 68-108 (241)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.99 E-value=3.7e-10 Score=90.06 Aligned_cols=54 Identities=30% Similarity=0.288 Sum_probs=45.1
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS 117 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~ 117 (125)
|||++... ..++ +++.+.+|+.|||+||+||+..++.|.+||+++++|+..++.
T Consensus 161 fdPlgl~~-~~~~---------~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~a 214 (232)
T 2bhw_A 161 FDPLGLAD-DPEA---------FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 214 (232)
T ss_dssp SCTTCTTC-SHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHH
T ss_pred cccchhcc-chHH---------HHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 89998763 2222 355677899999999999999999999999999999987764
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.95 E-value=5.4e-10 Score=90.42 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=46.2
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSS 118 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~~ 118 (125)
|||++... +.++ +++.+.+|+.|||+||+||+..++.|.+||+++++|+..++..
T Consensus 178 FDPLGl~~-d~e~---------~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hlad 232 (243)
T 3pl9_A 178 FDPLGLAS-DPEK---------KPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSD 232 (243)
T ss_dssp GCTTCTTC-STTT---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHC
T ss_pred hhhccccc-cHHH---------HHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcC
Confidence 89998864 2222 3556788999999999999999999999999999999887753
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.71 E-value=5.8e-10 Score=91.36 Aligned_cols=58 Identities=22% Similarity=0.132 Sum_probs=40.0
Q ss_pred ccee--eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155 50 KIIM--VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS 117 (125)
Q Consensus 50 ~~~~--~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~ 117 (125)
.|.. |||+..... .++ +++.+.+|+.|||+||+||+..++.|.+||+++++|+..++.
T Consensus 203 yPG~~~fDPlgl~~~-~~~---------~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~Hla 262 (276)
T 2wsc_3 203 YPGGPFFNPLGFGKD-EKS---------LKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLT 262 (276)
T ss_dssp TTSSSSCCCCCCSSS-CC--------------CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------
T ss_pred CCCcccccchhcccc-cHH---------HHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhcc
Confidence 3444 899988642 111 355678999999999999999999999999999999887664
No 4
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.60 E-value=6.3e-10 Score=90.88 Aligned_cols=51 Identities=29% Similarity=0.306 Sum_probs=42.5
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLA 113 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~ 113 (125)
|||+.....+. +++++.+.+|+.|||+|||||+..++.|.+||+++++|+.
T Consensus 201 fDPlgl~~~~~---------e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 201 FDPLGWGSASP---------QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp CCCSSSSSSCC---------CSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred cCccccCcccH---------HHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 89998754222 2246678899999999999999999999999999998876
No 5
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.38 E-value=1.6e-07 Score=76.02 Aligned_cols=37 Identities=35% Similarity=0.525 Sum_probs=29.7
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCc
Q 042155 70 IQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGK 106 (125)
Q Consensus 70 ~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~ 106 (125)
|.....|++.|++|++||||||+|++..++.|+.+|-
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence 3344468899999999999999999999999998763
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=98.36 E-value=4.3e-09 Score=84.74 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=41.7
Q ss_pred eeCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhhCchHHHHHHH
Q 042155 53 MVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIE-GQTGKNIIEQLAG 114 (125)
Q Consensus 53 ~~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E-~~TG~~il~Ql~~ 114 (125)
.|||++... + .+++++.+.+|+.|||+||+||+..++.| .+||+++++++..
T Consensus 171 ~fDPlgl~~-~---------~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~ 223 (241)
T 2wsc_1 171 AFDPLGYSK-D---------PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 223 (241)
T ss_dssp CSCSSSCSC-S---------SSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred ccccccccc-c---------hhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence 389998753 1 12346678899999999999999999999 5899999988764
No 7
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.34 E-value=1.8e-08 Score=81.37 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=41.3
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWS 117 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il~Ql~~~~~ 117 (125)
|||+.... +++.+..|+.|||+ ||||+..++.|.+||+++++++..++.
T Consensus 189 FDPLgl~~--------------~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hla 237 (251)
T 2wsc_4 189 FNPLNFAP--------------TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHIS 237 (251)
T ss_dssp TCCCCCCS--------------SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTT
T ss_pred cCccchhH--------------HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHcc
Confidence 89998753 24556789999999 999999999999999999988876543
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.31 E-value=1.6e-08 Score=81.72 Aligned_cols=46 Identities=37% Similarity=0.501 Sum_probs=33.7
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII 109 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il 109 (125)
|||+++.. + .+.+++.+++|++||||||+|++..++.|++|+.+++
T Consensus 76 fDPlGl~~-d---------~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 76 FDPLGLAE-D---------PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp -----CCC-S---------CCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCccccCC-C---------hHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 79998742 1 1245788999999999999999999999999987765
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.27 E-value=4.5e-07 Score=72.25 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=34.9
Q ss_pred eeCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155 53 MVDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT 104 (125)
Q Consensus 53 ~~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T 104 (125)
-|||+++.. + .+.|++.|++|+++|||||+|++..++.|+++
T Consensus 45 GFDPLGLs~-d---------~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~ 86 (232)
T 2bhw_A 45 GWDTAGLSA-D---------PETFSKNRELEVIHSRWAMLGALGSVFPELLS 86 (232)
T ss_dssp SCCTTCTTC-S---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCC-C---------HHHHHHHHHHHHhccchHHHhhhhhhhHHHhc
Confidence 389999853 1 13467889999999999999999999999865
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.10 E-value=3.3e-07 Score=74.84 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=30.9
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCchH
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNI 108 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~i 108 (125)
|||+++.. + .+.+++.+++|++||||||+|++..++.|++++.++
T Consensus 87 fDPlGL~~-d---------~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~ 131 (269)
T 2wsc_2 87 FDPLGLGS-D---------PESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI 131 (269)
T ss_dssp -------C-C---------CSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTS
T ss_pred CCccccCC-C---------HHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCc
Confidence 79998742 1 124578899999999999999999999999986554
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.90 E-value=8.1e-08 Score=78.68 Aligned_cols=33 Identities=30% Similarity=0.282 Sum_probs=30.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhCchHH
Q 042155 77 KRRRQIEAINGAWAMIGLTVGLVIEGQTGKNII 109 (125)
Q Consensus 77 ~~~~~~E~~NGR~AMiGf~~~l~~E~~TG~~il 109 (125)
++.+++|++||||||+|++..++.|++++.+++
T Consensus 97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 678899999999999999999999999987654
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.41 E-value=5.9e-06 Score=66.46 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=33.1
Q ss_pred eCcchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 042155 54 VDPLEAKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQT 104 (125)
Q Consensus 54 ~dple~k~~~ak~m~~~~~k~k~~~~~~~E~~NGR~AMiGf~~~l~~E~~T 104 (125)
|||+++... .+.+++.+++|++||||||++++..++.|.++
T Consensus 68 fDPlgl~~~----------~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 68 FDPLGLGEV----------PANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp CSSTTTTTT----------TTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred cCccccCCC----------HHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 899998531 12357788999999999999999999988753
Done!