BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042164
(235 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 26/151 (17%)
Query: 52 EGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGS 110
E E L D +G H L+NLQ+L L+W + + A+I L+ L+ L R S
Sbjct: 165 ELPEPLASTDASGEHQG--------LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216
Query: 111 NIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPN----------VISKLSRLEELYMDIS-F 159
+ L I L +L+ LDL C +L PP ++ S L L +DI
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 160 SQWDKVEGGSNASLAELKGLSKLTTLNIQVP 190
+Q +K++ L LS+L +L Q+P
Sbjct: 277 TQLEKLD------LRGCVNLSRLPSLIAQLP 301
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 49 HFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAI--GQLKKLEILS 106
H F G +EL D T H S LPS L L L+ L L + E++ I L LS
Sbjct: 275 HCFSGLQEL---DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 107 FRGSNIKQLPLEIG---QLTRLQLLDLSN 132
+G N K+L L G L L+ LDLS+
Sbjct: 332 IKG-NTKRLELGTGCLENLENLRELDLSH 359
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 46 ISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAI--GQLKKLE 103
IS F+ +L+ LD T H LPS + L L+ L L + + I L
Sbjct: 266 ISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLT 325
Query: 104 ILSFRGSNIKQLPLEIG---QLTRLQLLDL-------SNCWSLEV 138
L RG N+K+L L +G +L LQ LDL S+C SL++
Sbjct: 326 HLYIRG-NVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQL 369
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 50 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 109
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N +L E
Sbjct: 110 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 168
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 169 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 214
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 27/201 (13%)
Query: 12 ISLPQRDIQELPERLQCPNLQLFLLFR------EGNGPMQISDHFFEGTEELKVLD--FT 63
+ L DI E C NLQL L N P+ + D F+ +L++LD FT
Sbjct: 354 LDLSHSDI----EASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFT 409
Query: 64 GIHFSSLPS-----SLGRLINLQTLCLDWCQLEDVAAIGQLKKLEIL--SFRGSNIKQLP 116
+H + S L R++NL LD +A + L+ L + SF+ +I +
Sbjct: 410 HLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTN 469
Query: 117 LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL 176
L + + L++L LS+C +L I L + ++D+S + + G S +L+ L
Sbjct: 470 L-LQMVGSLEILILSSC-NLLSIDQQAFHGLRNVN--HLDLS---HNSLTGDSMDALSHL 522
Query: 177 KGLS-KLTTLNIQVPDAQILP 196
KGL + + NI++ +LP
Sbjct: 523 KGLYLNMASNNIRIIPPHLLP 543
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 46 ISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAI--GQLKKLE 103
+S F ++ LD T H + LPS + + +L+ L L+ + + I L
Sbjct: 268 LSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLR 327
Query: 104 ILSFRGSNIKQLPLE---IGQLTRLQLLDL-------SNCWSLEVIPPNVISKLSRLEEL 153
L +G N+++L L + +L LQ LDL S+C +L+ + L L+
Sbjct: 328 DLYIKG-NMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ------LKNLRHLQ-- 378
Query: 154 YMDISFSQWDKVEGGSNASLAELKGLS-KLTTLNIQVPDA 192
Y+++S+++ +E + +L+ L T L+++ P +
Sbjct: 379 YLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N +L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD C+L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 51 FEGTEELKVLDFTGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILS 106
F G L+VL G F LP L NL L L CQLE ++ A L L++L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 107 FRGSNIKQLPLEI-GQLTRLQ 126
+ +K +P I +LT LQ
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQ 521
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 51 FEGTEELKVLDFTGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILS 106
F G L+VL G F LP L NL L L CQLE ++ A L L++L+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 107 FRGSNIKQL-PLEIGQLTRLQLLDLS 131
+N L L LQ+LD S
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYS 550
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
S L L L L L+ QLED++ I LK L L+ +NI + + LT+LQ L S
Sbjct: 276 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFS 334
Query: 132 NCWSLEVIPPNVISKLSRLEEL 153
N N +S +S L L
Sbjct: 335 N---------NKVSDVSSLANL 347
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 37/129 (28%)
Query: 57 LKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLP 116
L+ LD + S + S L +L NL++L Q+ D+ +G L L+ LS G+ +K +
Sbjct: 174 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 117 LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL 176
+ LT L LDL+N N IS +LA L
Sbjct: 233 -TLASLTNLTDLDLAN---------NQIS--------------------------NLAPL 256
Query: 177 KGLSKLTTL 185
GL+KLT L
Sbjct: 257 SGLTKLTEL 265
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
S L L L L L+ QLED++ I LK L L+ +NI + + LT+LQ L S
Sbjct: 277 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFS 335
Query: 132 NCWSLEVIPPNVISKLSRLEEL 153
N N +S +S L L
Sbjct: 336 N---------NKVSDVSSLANL 348
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 37/129 (28%)
Query: 57 LKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLP 116
L+ LD + S + S L +L NL++L Q+ D+ +G L L+ LS G+ +K +
Sbjct: 175 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 117 LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL 176
+ LT L LDL+N N IS L A L
Sbjct: 234 -TLASLTNLTDLDLAN---------NQISNL--------------------------APL 257
Query: 177 KGLSKLTTL 185
GL+KLT L
Sbjct: 258 SGLTKLTEL 266
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 51 FEGTEELKVLDFTGIHF--SSLPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILS 106
F G L+VL G F + LP L NL L L CQLE ++ A L L++L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 107 FRGSNIKQL-PLEIGQLTRLQLLDLS 131
+N L L LQ+LD S
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYS 526
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 51 FEGTEELKVLDFTGIHFSS--LPSSLGRLINLQTLCLDWCQLEDVA--AIGQLKKLEILS 106
F G L+VL G F LP L NL L L CQLE ++ A L L++L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 107 FRGSNIKQL-PLEIGQLTRLQLLDLS 131
+N L L LQ+LD S
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYS 231
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 37/129 (28%)
Query: 57 LKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLP 116
L+ LD + S + S L +L NL++L Q+ D+ +G L L+ LS G+ +K +
Sbjct: 174 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 117 LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL 176
+ LT L LDL+N N IS +LA L
Sbjct: 233 -TLASLTNLTDLDLAN---------NQIS--------------------------NLAPL 256
Query: 177 KGLSKLTTL 185
GL+KLT L
Sbjct: 257 SGLTKLTEL 265
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLL 128
S L L L L L+ QLED++ I LK L L+ +NI + + LT+LQ L
Sbjct: 276 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRL 331
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 37/129 (28%)
Query: 57 LKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLP 116
L+ LD + S + S L +L NL++L Q+ D+ +G L L+ LS G+ +K +
Sbjct: 179 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 237
Query: 117 LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL 176
+ LT L LDL+N N IS +LA L
Sbjct: 238 -TLASLTNLTDLDLAN---------NQIS--------------------------NLAPL 261
Query: 177 KGLSKLTTL 185
GL+KLT L
Sbjct: 262 SGLTKLTEL 270
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLL 128
S L L L L L+ QLED++ I LK L L+ +NI + + LT+LQ L
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRL 336
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 37/129 (28%)
Query: 57 LKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLP 116
L+ LD + S + S L +L NL++L Q+ D+ +G L L+ LS G+ +K +
Sbjct: 178 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 236
Query: 117 LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL 176
+ LT L LDL+N N IS +LA L
Sbjct: 237 -TLASLTNLTDLDLAN---------NQIS--------------------------NLAPL 260
Query: 177 KGLSKLTTL 185
GL+KLT L
Sbjct: 261 SGLTKLTEL 269
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
S L L L L L+ QLED++ I LK L L+ +NI + + LT+LQ L +
Sbjct: 280 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFA 338
Query: 132 NCWSLEVIPPNVISKLSRLEEL 153
N N +S +S L L
Sbjct: 339 N---------NKVSDVSSLANL 351
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
S+L L +LQ L Q+ D+ + L LE L + + + + + +LT L+ L +
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIAT 203
Query: 132 NCWSLEVIPPNVISKL-------SRLEELYMDISFSQWDKVEGGSN--ASLAELKGLSKL 182
N ++ P +++ L ++L+++ S + ++ +N ++LA L GL+KL
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 263
Query: 183 TTL 185
T L
Sbjct: 264 TEL 266
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLL 128
S L L L L L+ QLED++ I LK L L+ +NI + + LT+LQ L
Sbjct: 277 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRL 332
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 37/129 (28%)
Query: 57 LKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLP 116
L+ LD + S + S L +L NL++L Q+ D+ +G L L+ LS G+ +K +
Sbjct: 175 LERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 117 LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL 176
+ LT L LDL+N N IS +LA L
Sbjct: 234 -TLASLTNLTDLDLAN---------NQIS--------------------------NLAPL 257
Query: 177 KGLSKLTTL 185
GL+KLT L
Sbjct: 258 SGLTKLTEL 266
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLL 128
S L L L L L+ QLED++ I LK L L+ +NI + + LT+LQ L
Sbjct: 277 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRL 332
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD +L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N +L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD +L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N +L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 17/166 (10%)
Query: 72 SSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131
++L L L LD +L + G L L L + ++ LPL L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 132 NCWSLEVIPPNVISKLSRLEELYMDIS---------FSQWDKVEGGS--NASLAE----- 175
L +P + L L+ELY+ + + K+E S N +L E
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 176 LKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221
L GL L TL +Q +P+ + L + GN W + +
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 89 QLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQ---LTRLQLLDLSNCWSLEVIPPNVIS 145
Q+ L LE+L ++I+Q+ E+G L L L+L + W L VIP
Sbjct: 88 QMIQADTFRHLHHLEVLQLGRNSIRQI--EVGAFNGLASLNTLELFDNW-LTVIPSGAFE 144
Query: 146 KLSRLEELYM------DISFSQWDKVEGGSNASLAELK-----------GLSKLTTLNIQ 188
LS+L EL++ I +++V L ELK GL L LN+
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204
Query: 189 VPDAQILPQ 197
+ + + +P
Sbjct: 205 MCNIKDMPN 213
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 32 QLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTLCLDWCQL 90
QL L+ GN + F+ +LK L S+P+ + +L NLQTL L QL
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 91 EDV--AAIGQLKKLEILSFRGSNIKQLPLEI 119
+ V A +L KL+ ++ G+ EI
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 32 QLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTLCLDWCQL 90
QL L+ GN + F+ +LK L S+P+ + +L NLQTL L QL
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 91 EDV--AAIGQLKKLEILSFRGS 110
+ V A +L KL+ ++ G+
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGN 189
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 73 SLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLD 129
SL L NL+ L + +L+ + +G L KLE+L G+ I G LTRL+ ++
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN----TGGLTRLKKVN 175
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 41 NGPMQ-ISDHFFEGTEELKVLDF---TGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAI 96
N P++ I + F L+ LD + + S + G L+NL+ L L C L+D+ +
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG-LVNLRYLNLGMCNLKDIPNL 174
Query: 97 GQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYM 155
L +LE L G+ + + P LT L+ L L + + I N L LEEL +
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNL 233
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 77 LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWS 135
L+NL+ L L C L+D+ + L +LE L G+ + + P LT L+ L L +
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA-Q 213
Query: 136 LEVIPPNVISKLSRLEELYM 155
+ I N L LEEL +
Sbjct: 214 VATIERNAFDDLKSLEELNL 233
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 3 ETIRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDH 49
+T G + + QRD +++ E LQ Q+ + EGN P+ I+ H
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVH 48
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 107 FRGSN-IKQLPLEI-GQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYM 155
+ GSN + LP+ + LT+L +LDL L V+P V +L L+EL+M
Sbjct: 70 YLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFM 119
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 105 LSFRGSNIKQLPLEIGQLTRLQLLDLSN 132
L G+++ +LP EI L+ L++LDLS+
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSH 279
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLD 86
+C NLQ +L NG I + F L+ LD + + S+L SS
Sbjct: 74 RCVNLQALVL--TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS------------- 118
Query: 87 WCQLEDVAAIGQLKKLEILSFRGSNIKQLPLE--IGQLTRLQLLDLSNCWSLEVIPPNVI 144
W + L L L+ G+ K L LT+LQ+L + N + I
Sbjct: 119 WFK--------PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 145 SKLSRLEELYMDIS 158
+ L+ LEEL +D S
Sbjct: 171 AGLTFLEELEIDAS 184
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 22 LPE--RLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLIN 79
LPE R Q P F E G + D F+ + K + F+S P L I
Sbjct: 538 LPELVRAQVP----FSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIK 593
Query: 80 LQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIK 113
T LDW + +I ++L+I RG+ ++
Sbjct: 594 KFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 627
>pdb|1MUK|A Chain A, Reovirus Lambda3 Native Structure
pdb|1MWH|A Chain A, Reovirus Polymerase Lambda3 Bound To Mrna Cap Analog
pdb|1N1H|A Chain A, Initiation Complex Of Polymerase Lambda3 From Reovirus
pdb|1N35|A Chain A, Lambda3 Elongation Complex With Four Phosphodiester Bond
Formed
pdb|1N38|A Chain A, Reovirus Polymerase Lambda3 Elongation Complex With One
Phosphodiester Bond Formed
pdb|1UON|A Chain A, Reovirus Polymerase Lambda-3 Localized By Electron
Cryomicroscopy Of Virions At 7.6-a Resolution
Length = 1267
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 151 EELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILP 196
+ L+ I SQ+ GGS A+L E L +N+ +PD + LP
Sbjct: 444 DPLFQAIMRSQYVTARGGSGAALRE-----SLYAINVSLPDFKGLP 484
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 25/134 (18%)
Query: 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLD 86
+C NLQ +L NG I + F L+ LD + + S+L SS
Sbjct: 48 RCVNLQALVL--TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS------------- 92
Query: 87 WCQLEDVAAIGQLKKLEILSFRGSNIKQLPLE--IGQLTRLQLLDLSNCWSLEVIPPNVI 144
W L L L+ G+ K L LT+LQ+L + N + I
Sbjct: 93 W--------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 144
Query: 145 SKLSRLEELYMDIS 158
+ L+ LEEL +D S
Sbjct: 145 AGLTFLEELEIDAS 158
>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1267
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 151 EELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILP 196
+ L+ I SQ+ GGS A+L E L +N+ +PD + LP
Sbjct: 444 DPLFQAIMRSQYVTARGGSGAALRE-----SLYAINVSLPDFKGLP 484
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 96 IGQLKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEEL 153
IG + L IL+ ++I +P E+G L L +LDLS+ L+ P +S L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEI 706
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 96 IGQLKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEEL 153
IG + L IL+ ++I +P E+G L L +LDLS+ L+ P +S L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEI 709
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 46 ISDHFFEGTEELKVLDFTGIHFSSL--PSSLGRLINLQTLCLDWCQLEDV 93
I FE ++L+VLD + H +L S LG L NL+ L LD QL+ V
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQLKSV 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,020,921
Number of Sequences: 62578
Number of extensions: 285313
Number of successful extensions: 657
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 97
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)