Query 042164
Match_columns 235
No_of_seqs 150 out of 2146
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.6E-22 7.8E-27 182.4 14.5 193 6-209 92-315 (968)
2 PLN00113 leucine-rich repeat r 99.9 8.3E-22 1.8E-26 180.0 14.0 193 6-209 139-339 (968)
3 KOG4194 Membrane glycoprotein 99.9 8.8E-24 1.9E-28 173.4 -1.3 201 6-215 196-428 (873)
4 KOG0444 Cytoskeletal regulator 99.8 1.9E-22 4.2E-27 167.2 -0.8 192 5-209 101-298 (1255)
5 KOG4194 Membrane glycoprotein 99.8 6.3E-21 1.4E-25 156.8 5.0 217 4-234 99-346 (873)
6 KOG0617 Ras suppressor protein 99.8 4.7E-21 1E-25 135.3 -3.2 165 21-199 25-192 (264)
7 KOG0617 Ras suppressor protein 99.8 6.3E-21 1.4E-25 134.6 -4.4 153 6-163 32-188 (264)
8 KOG0472 Leucine-rich repeat pr 99.8 5E-20 1.1E-24 145.5 -0.6 205 5-215 204-540 (565)
9 KOG0444 Cytoskeletal regulator 99.7 4.8E-20 1E-24 153.2 -2.2 195 6-210 54-253 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 1.2E-20 2.5E-25 149.0 -9.0 188 9-210 93-283 (565)
11 PLN03210 Resistant to P. syrin 99.7 9.2E-16 2E-20 141.9 15.0 206 7-216 611-883 (1153)
12 KOG0618 Serine/threonine phosp 99.6 8.2E-18 1.8E-22 144.7 -2.7 210 6-232 286-503 (1081)
13 KOG4237 Extracellular matrix p 99.6 2.4E-17 5.1E-22 130.1 0.0 144 12-159 51-199 (498)
14 PRK15370 E3 ubiquitin-protein 99.6 1.2E-15 2.5E-20 133.9 8.8 103 5-117 197-300 (754)
15 PRK15370 E3 ubiquitin-protein 99.6 4.3E-15 9.3E-20 130.4 11.1 116 7-134 178-294 (754)
16 PLN03210 Resistant to P. syrin 99.6 1E-14 2.2E-19 135.0 14.0 145 7-160 589-737 (1153)
17 KOG4237 Extracellular matrix p 99.6 6.1E-17 1.3E-21 127.8 -0.6 199 5-215 65-358 (498)
18 PRK15387 E3 ubiquitin-protein 99.6 1.3E-14 2.8E-19 127.1 11.0 80 7-93 222-317 (788)
19 KOG0618 Serine/threonine phosp 99.6 5.1E-16 1.1E-20 133.9 1.0 196 6-215 240-464 (1081)
20 KOG0532 Leucine-rich repeat (L 99.6 1.1E-16 2.3E-21 131.7 -3.1 184 6-205 74-259 (722)
21 PRK15387 E3 ubiquitin-protein 99.6 3.2E-14 6.9E-19 124.6 11.2 182 5-216 240-458 (788)
22 cd00116 LRR_RI Leucine-rich re 99.5 2.2E-15 4.8E-20 121.4 1.6 181 7-193 23-234 (319)
23 cd00116 LRR_RI Leucine-rich re 99.5 7.9E-15 1.7E-19 118.1 3.6 203 6-215 50-290 (319)
24 KOG0532 Leucine-rich repeat (L 99.5 8.4E-16 1.8E-20 126.5 -2.8 188 11-215 54-246 (722)
25 KOG1259 Nischarin, modulator o 99.5 8.5E-15 1.8E-19 112.4 0.6 183 4-198 211-417 (490)
26 PF14580 LRR_9: Leucine-rich r 99.5 8.9E-14 1.9E-18 101.2 5.3 130 52-187 16-147 (175)
27 PF14580 LRR_9: Leucine-rich r 99.4 7.8E-14 1.7E-18 101.5 4.6 139 63-211 5-149 (175)
28 KOG3207 Beta-tubulin folding c 99.4 5.3E-14 1.2E-18 112.6 0.3 202 6-210 120-334 (505)
29 KOG3207 Beta-tubulin folding c 99.3 4.1E-13 9E-18 107.6 1.6 194 27-232 119-329 (505)
30 COG4886 Leucine-rich repeat (L 99.3 4.3E-12 9.4E-17 105.3 5.9 169 27-209 114-284 (394)
31 COG4886 Leucine-rich repeat (L 99.3 6.4E-12 1.4E-16 104.3 5.9 178 7-199 116-296 (394)
32 KOG1909 Ran GTPase-activating 99.1 3.3E-12 7.1E-17 99.8 -1.3 181 6-192 29-253 (382)
33 KOG1259 Nischarin, modulator o 99.1 5.4E-12 1.2E-16 97.2 -0.9 127 4-134 281-410 (490)
34 KOG1909 Ran GTPase-activating 99.1 1.6E-11 3.5E-16 96.0 1.6 199 7-210 58-306 (382)
35 KOG4658 Apoptotic ATPase [Sign 99.0 4.6E-10 1E-14 100.6 6.9 151 6-158 522-678 (889)
36 KOG0531 Protein phosphatase 1, 99.0 7.6E-11 1.6E-15 98.4 -1.0 28 182-209 234-262 (414)
37 KOG1859 Leucine-rich repeat pr 98.9 6.6E-12 1.4E-16 106.7 -7.9 127 57-193 166-292 (1096)
38 PLN03150 hypothetical protein; 98.9 6.3E-09 1.4E-13 91.0 8.9 81 80-161 420-503 (623)
39 KOG0531 Protein phosphatase 1, 98.9 1.9E-10 4.1E-15 96.1 -1.5 167 28-210 71-240 (414)
40 PF13855 LRR_8: Leucine rich r 98.9 2.4E-09 5.1E-14 64.5 3.2 58 101-159 2-60 (61)
41 PLN03150 hypothetical protein; 98.9 9.3E-09 2E-13 90.0 8.2 102 101-211 419-524 (623)
42 PF13855 LRR_8: Leucine rich r 98.8 3E-09 6.5E-14 64.0 3.2 61 123-192 1-61 (61)
43 KOG2982 Uncharacterized conser 98.8 2.6E-09 5.7E-14 82.4 1.8 193 30-232 46-252 (418)
44 KOG4658 Apoptotic ATPase [Sign 98.8 7.7E-09 1.7E-13 92.9 4.6 159 19-188 513-676 (889)
45 KOG1859 Leucine-rich repeat pr 98.7 2.1E-10 4.5E-15 97.8 -5.5 122 79-214 165-290 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.7 1.6E-10 3.4E-15 89.0 -6.4 155 55-214 185-350 (419)
47 KOG2120 SCF ubiquitin ligase, 98.7 6E-10 1.3E-14 85.9 -4.5 175 7-190 185-373 (419)
48 KOG4579 Leucine-rich repeat (L 98.5 4.2E-09 9.1E-14 72.3 -2.4 116 80-206 29-149 (177)
49 KOG2982 Uncharacterized conser 98.5 3E-08 6.4E-13 76.7 1.5 197 8-214 72-288 (418)
50 KOG3665 ZYG-1-like serine/thre 98.5 4E-08 8.6E-13 86.3 1.2 147 5-153 120-280 (699)
51 PF12799 LRR_4: Leucine Rich r 98.5 2.6E-07 5.6E-12 51.3 4.0 40 56-95 2-41 (44)
52 KOG1644 U2-associated snRNP A' 98.5 3.1E-07 6.7E-12 67.3 5.5 120 10-133 22-150 (233)
53 KOG4579 Leucine-rich repeat (L 98.4 1.7E-08 3.7E-13 69.4 -2.2 90 52-142 50-141 (177)
54 KOG1644 U2-associated snRNP A' 98.4 7.4E-07 1.6E-11 65.3 5.7 104 79-189 43-149 (233)
55 COG5238 RNA1 Ran GTPase-activa 98.3 2.7E-07 5.9E-12 70.6 2.6 201 5-211 28-281 (388)
56 KOG3665 ZYG-1-like serine/thre 98.3 6.5E-07 1.4E-11 78.8 3.4 152 54-208 121-281 (699)
57 PF12799 LRR_4: Leucine Rich r 98.2 3.1E-06 6.6E-11 47.0 3.8 33 102-134 3-35 (44)
58 COG5238 RNA1 Ran GTPase-activa 98.1 3.3E-06 7.1E-11 64.9 4.7 136 53-193 28-198 (388)
59 KOG2123 Uncharacterized conser 98.1 1.8E-07 4E-12 71.8 -3.3 105 77-186 18-123 (388)
60 PRK15386 type III secretion pr 98.0 3E-05 6.6E-10 63.8 7.7 132 7-158 52-187 (426)
61 PF13306 LRR_5: Leucine rich r 97.9 7.6E-05 1.7E-09 51.7 7.0 115 27-150 10-128 (129)
62 KOG2123 Uncharacterized conser 97.7 1.4E-06 3E-11 67.0 -3.4 99 99-208 18-123 (388)
63 PF13306 LRR_5: Leucine rich r 97.7 0.00015 3.3E-09 50.2 6.7 106 46-157 3-112 (129)
64 PRK15386 type III secretion pr 97.6 0.00026 5.7E-09 58.4 8.0 72 52-134 49-123 (426)
65 KOG2739 Leucine-rich acidic nu 97.6 3.5E-05 7.5E-10 58.8 1.6 102 52-154 40-149 (260)
66 KOG2739 Leucine-rich acidic nu 97.5 4.1E-05 9E-10 58.4 1.8 123 8-134 19-154 (260)
67 KOG4341 F-box protein containi 97.0 5.1E-05 1.1E-09 61.7 -3.1 199 8-215 139-385 (483)
68 PF00560 LRR_1: Leucine Rich R 96.5 0.0011 2.3E-08 30.7 0.8 21 56-76 1-21 (22)
69 PF13504 LRR_7: Leucine rich r 96.4 0.0018 3.9E-08 27.9 1.0 17 180-196 1-17 (17)
70 PF00560 LRR_1: Leucine Rich R 95.7 0.0046 1E-07 28.5 0.7 16 102-117 2-17 (22)
71 KOG3864 Uncharacterized conser 95.0 0.0054 1.2E-07 45.5 -0.5 82 101-190 102-186 (221)
72 KOG1947 Leucine rich repeat pr 94.9 0.014 2.9E-07 49.7 1.7 106 54-159 187-306 (482)
73 KOG4341 F-box protein containi 94.5 0.021 4.5E-07 47.0 1.7 205 6-214 215-438 (483)
74 KOG1947 Leucine rich repeat pr 94.4 0.023 5E-07 48.4 2.0 129 75-210 185-329 (482)
75 smart00369 LRR_TYP Leucine-ric 94.2 0.028 6.2E-07 26.9 1.2 20 179-198 1-20 (26)
76 smart00370 LRR Leucine-rich re 94.2 0.028 6.2E-07 26.9 1.2 20 179-198 1-20 (26)
77 KOG4308 LRR-containing protein 94.1 0.00039 8.5E-09 59.0 -9.3 179 9-193 89-303 (478)
78 KOG0473 Leucine-rich repeat pr 93.0 0.0018 3.8E-08 49.1 -6.3 83 52-134 39-122 (326)
79 KOG3864 Uncharacterized conser 91.6 0.041 8.9E-07 40.9 -0.6 76 57-132 103-185 (221)
80 KOG4308 LRR-containing protein 90.5 0.0046 1E-07 52.6 -7.3 154 6-161 114-303 (478)
81 smart00364 LRR_BAC Leucine-ric 88.5 0.26 5.7E-06 23.6 1.0 18 180-197 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 87.0 0.017 3.6E-07 44.1 -5.6 84 27-113 40-124 (326)
83 smart00365 LRR_SD22 Leucine-ri 83.0 1.2 2.5E-05 21.4 1.7 17 7-23 2-18 (26)
84 PF13516 LRR_6: Leucine Rich r 78.4 1.5 3.2E-05 20.2 1.2 14 148-161 2-15 (24)
85 KOG3763 mRNA export factor TAP 74.8 1.2 2.7E-05 38.3 0.6 11 150-160 272-282 (585)
86 KOG3763 mRNA export factor TAP 74.6 1.9 4.2E-05 37.2 1.7 79 121-208 216-307 (585)
87 smart00368 LRR_RI Leucine rich 74.6 2.5 5.5E-05 20.4 1.5 14 55-68 2-15 (28)
88 smart00367 LRR_CC Leucine-rich 70.4 3.9 8.4E-05 19.3 1.6 13 122-134 1-13 (26)
89 TIGR00864 PCC polycystin catio 27.0 60 0.0013 34.4 3.0 31 106-136 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=3.6e-22 Score=182.36 Aligned_cols=193 Identities=25% Similarity=0.331 Sum_probs=89.1
Q ss_pred cCCCcEEecCCCCCC-CCCCcC--CCCCccEEEeccCCCCCccc----------------------chhhhhCCCCCcEE
Q 042164 6 RKGPIAISLPQRDIQ-ELPERL--QCPNLQLFLLFREGNGPMQI----------------------SDHFFEGTEELKVL 60 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~-~i~~~~--~l~~L~~L~l~~~~~~~~~~----------------------~~~~~~~~~~L~~L 60 (235)
+++|+.|++++|.+. .+|... .+++|+.|++ +.+...+.+ |.. ++.+++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L-s~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL-SNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEEC-cCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEE
Confidence 456666666666654 455443 4555555555 333333323 322 2444444555
Q ss_pred eecCccCC-CCChhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcCC
Q 042164 61 DFTGIHFS-SLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSL 136 (235)
Q Consensus 61 ~l~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 136 (235)
++++|.+. .+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+. .+|..++.+++|++|++++|.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 55444443 2444444444555555544444322 34444445555555555444 34444445555555555555433
Q ss_pred CCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC-CCCccc-cccccceeEE
Q 042164 137 EVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEW-VFVELQSYRI 209 (235)
Q Consensus 137 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~-~~~~L~~l~l 209 (235)
+.+|.. ++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.+. .+|..+ .+++|+.|++
T Consensus 250 ~~~p~~-l~~l~~L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 250 GPIPSS-LGNLKNLQYLFLYQNKLSGP--------IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred cccChh-HhCCCCCCEEECcCCeeecc--------CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 344433 44455555555555544322 2333344444444444444443 333333 3444444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=8.3e-22 Score=180.00 Aligned_cols=193 Identities=21% Similarity=0.289 Sum_probs=133.1
Q ss_pred cCCCcEEecCCCCCC-CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC-CChhhcCCccCcE
Q 042164 6 RKGPIAISLPQRDIQ-ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS-LPSSLGRLINLQT 82 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~-~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~ 82 (235)
+++|++|++++|.+. .+|..+ .+++|+.|++ +.+.....+|.. +..+++|++|++++|.+.. +|..+..+++|++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L-~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL-GGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEEC-ccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 456777777777765 456555 7888888888 555555566665 4788888888888888774 6777888888888
Q ss_pred EeccCcCCCC-c-cccCCCCCCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccc
Q 042164 83 LCLDWCQLED-V-AAIGQLKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISF 159 (235)
Q Consensus 83 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 159 (235)
|++++|.+.+ + ..++.+++|++|++++|.++ .+|..++++++|++|++++|.+.+.+|.. +..+++|++|++++|.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCe
Confidence 8888888764 3 66778888888888888776 56777788888888888888755666665 6777778888887777
Q ss_pred ccccccCCCCCccchhcccCCCccceeeecCCCC-CCCccc-cccccceeEE
Q 042164 160 SQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEW-VFVELQSYRI 209 (235)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~-~~~~L~~l~l 209 (235)
+.+. .+..+..+++|+.|++++|.+. .+|..+ .+++|+.|++
T Consensus 296 l~~~--------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 296 LSGE--------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred eccC--------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 6633 2333444455555555555543 333333 4444555544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=8.8e-24 Score=173.35 Aligned_cols=201 Identities=20% Similarity=0.300 Sum_probs=153.3
Q ss_pred cCCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCC------------------------CcccchhhhhCCCCCcE
Q 042164 6 RKGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNG------------------------PMQISDHFFEGTEELKV 59 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~------------------------~~~~~~~~~~~~~~L~~ 59 (235)
+.+|..|.|+.|+++.+|... .+++|+.|++ ..+. +.++-++.|-.+.++++
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL--nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL--NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhc--cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 446667777777777776654 4677777666 3332 23334445556677777
Q ss_pred EeecCccCCCCC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcC
Q 042164 60 LDFTGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWS 135 (235)
Q Consensus 60 L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 135 (235)
|+|..|+++.+. ..+..+++|++|++++|.++.+ ..|...++|++|+++.|+++.+++. +..+..|+.|++++|.
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns- 352 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS- 352 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-
Confidence 777777777654 3456788888888888888866 8888889999999999999988654 7888889999999998
Q ss_pred CCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEecc
Q 042164 136 LEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGN 213 (235)
Q Consensus 136 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~ 213 (235)
+..+.+.++..+.+|++|+++.|.+.+. .++....+.++++|++|++.||+++.+|..- .+++|++|++ .+|
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~-----IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL-~~N 426 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWC-----IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL-GDN 426 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEE-----EecchhhhccchhhhheeecCceeeecchhhhccCcccceecC-CCC
Confidence 7777777788999999999999988744 3345667888999999999999999999876 8888999998 455
Q ss_pred cc
Q 042164 214 KW 215 (235)
Q Consensus 214 ~~ 215 (235)
..
T Consensus 427 ai 428 (873)
T KOG4194|consen 427 AI 428 (873)
T ss_pred cc
Confidence 44
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.9e-22 Score=167.16 Aligned_cols=192 Identities=23% Similarity=0.295 Sum_probs=155.4
Q ss_pred ccCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEE
Q 042164 5 IRKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTL 83 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 83 (235)
.+..|+.|+|++|.+.++|... ..+++-.|++ +++.+.++|..+|..+.-|-.||+++|.+..+|+.+..+.+|+.|
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL--S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL--SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEc--ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 3568999999999999999998 8999999999 888889999999999999999999999999999999999999999
Q ss_pred eccCcCCCCc--cccCCCCCCcEEEecCCCCC--CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccc
Q 042164 84 CLDWCQLEDV--AAIGQLKKLEILSFRGSNIK--QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISF 159 (235)
Q Consensus 84 ~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 159 (235)
.+++|.+..+ ..+..+.+|.+|.+++++-+ .+|..+..+.+|+.+|++.|. ...+|.- +..+++|+.|++++|.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPec-ly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPEC-LYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHH-HhhhhhhheeccCcCc
Confidence 9999998755 67777888888888888665 778888888888888888886 6666665 7788888888888888
Q ss_pred ccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEE
Q 042164 160 SQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRI 209 (235)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l 209 (235)
++.. -...+...+|+.|++|.|++..+|..+ .+++|+.|.+
T Consensus 257 iteL---------~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 257 ITEL---------NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred eeee---------eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence 8743 333344555666666666666666655 5555555554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=6.3e-21 Score=156.77 Aligned_cols=217 Identities=18% Similarity=0.236 Sum_probs=148.0
Q ss_pred cccCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCc
Q 042164 4 TIRKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQ 81 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~ 81 (235)
..+++|+++++.+|.++.||... ...+++.|.+ .++.+..+..+.++.++.|+.|||+.|.++.++ +.|..-.+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L--~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL--RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEee--eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 34677778888888887787777 5667888888 666666666665677888888888888888776 3455556788
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCc------------------
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIP------------------ 140 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~------------------ 140 (235)
+|+++.|.++.+ ..|..+.+|.+|.++.|+++.+|.. |.++++|+.|++..|. +..+.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhc
Confidence 888888888866 7788888888888999888888765 7778888888888886 33221
Q ss_pred ------hhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCc--cccccccceeEEEec
Q 042164 141 ------PNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQ--EWVFVELQSYRICIG 212 (235)
Q Consensus 141 ------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~--~~~~~~L~~l~l~~~ 212 (235)
..+|..|.++++|++..|++... .-..+-+++.|+.|++|.|.+..+.. |.++++|+.|+++.
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~v--------n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~- 326 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAV--------NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS- 326 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhh--------hcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-
Confidence 12233444444444444444422 22344457788888888888874433 33888888888864
Q ss_pred ccccccchhhhhhhhhccccCC
Q 042164 213 NKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~L~~L 234 (235)
|.. ...++..+.-+..|+.|
T Consensus 327 N~i--~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 327 NRI--TRLDEGSFRVLSQLEEL 346 (873)
T ss_pred ccc--ccCChhHHHHHHHhhhh
Confidence 443 22344555555555544
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=4.7e-21 Score=135.28 Aligned_cols=165 Identities=26% Similarity=0.391 Sum_probs=116.5
Q ss_pred CCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc-cccCCC
Q 042164 21 ELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQL 99 (235)
Q Consensus 21 ~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l 99 (235)
++|..+.+.+++.|.+ +.+.+..+|+.+ +.+.+|++|++.+|+++.+|.+++.+++|+.|+++.|++.-+ ..||.+
T Consensus 25 ~~~gLf~~s~ITrLtL--SHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTL--SHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhc--ccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 4555556677777777 555555566653 677777777777777777777777777777777777776655 667777
Q ss_pred CCCcEEEecCCCCC--CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcc
Q 042164 100 KKLEILSFRGSNIK--QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELK 177 (235)
Q Consensus 100 ~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 177 (235)
+.|+.||+++|++. .+|..|..+..|+.|.+++|. ...+|++ ++++++|+.|.+..|.+- ..+..++
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll---------~lpkeig 170 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL---------SLPKEIG 170 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh---------hCcHHHH
Confidence 77777777777766 567766667777777777776 6667776 677777777777776654 3466777
Q ss_pred cCCCccceeeecCCCCCCCccc
Q 042164 178 GLSKLTTLNIQVPDAQILPQEW 199 (235)
Q Consensus 178 ~~~~L~~L~l~~n~~~~~p~~~ 199 (235)
.+..|++|++.+|.+..+|+.+
T Consensus 171 ~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHhcccceeeecChhh
Confidence 7777777777777777777655
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=6.3e-21 Score=134.64 Aligned_cols=153 Identities=22% Similarity=0.349 Sum_probs=141.5
Q ss_pred cCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 6 RKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
+.++++|.+++|.++.+|+.+ .+.+|+.|++ +++.+.++|..+ +.++.|+.|+++.|.+..+|..|+.+|-|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~--~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNL--SNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhc--ccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 567889999999999998887 9999999999 999999999885 899999999999999999999999999999999
Q ss_pred ccCcCCCCc---cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 85 LDWCQLEDV---AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 85 l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
+.+|.+.+- ..|..+..|+.|.++.|.+..+|+.++++++|+.|.+++|. .-.+|.+ ++.++.|++|++++|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 999998843 77888899999999999999999999999999999999998 6778988 899999999999999998
Q ss_pred cc
Q 042164 162 WD 163 (235)
Q Consensus 162 ~~ 163 (235)
..
T Consensus 187 vl 188 (264)
T KOG0617|consen 187 VL 188 (264)
T ss_pred ec
Confidence 33
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=5e-20 Score=145.46 Aligned_cols=205 Identities=26% Similarity=0.357 Sum_probs=156.5
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
.+..+..|++..|++..+|+.-+|..|.++++ ..+++..+|++....+.++.+||+++|++..+|+++..+.+|++|+
T Consensus 204 ~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~--g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLPEFPGCSLLKELHV--GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD 281 (565)
T ss_pred chhhhHHHHhhhcccccCCCCCccHHHHHHHh--cccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence 34566677888888888886668888888888 7788888888877788888999999999988998888888899999
Q ss_pred ccCcCCCCc-cccCCCCCCcEEEecCCC----------------------------------------------------
Q 042164 85 LDWCQLEDV-AAIGQLKKLEILSFRGSN---------------------------------------------------- 111 (235)
Q Consensus 85 l~~~~l~~~-~~~~~l~~L~~L~l~~~~---------------------------------------------------- 111 (235)
+++|.++++ ..++++ +|+.|.+.+|.
T Consensus 282 lSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 282 LSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred ccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 999988877 777777 66666666554
Q ss_pred ---------------------------------------------------------------CCCcchhhccCCCCcEE
Q 042164 112 ---------------------------------------------------------------IKQLPLEIGQLTRLQLL 128 (235)
Q Consensus 112 ---------------------------------------------------------------~~~~~~~~~~l~~L~~L 128 (235)
+.-.|..+..+++|..|
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence 11233456777888888
Q ss_pred cccCCcCCCCCchhhhcCCCCCcEEEeccccccccccC--------------CCCCccch-hcccCCCccceeeecCCCC
Q 042164 129 DLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVE--------------GGSNASLA-ELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 129 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--------------~~~~~~~~-~~~~~~~L~~L~l~~n~~~ 193 (235)
++++|. ...+|.+ ++.+..|++++++.|+|...+.- .....+.+ .+.++.+|..||+.+|.+.
T Consensus 441 ~L~NN~-Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 441 DLSNNL-LNDLPEE-MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ecccch-hhhcchh-hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 888886 7778888 67788899999999988755211 01222233 3777888999999999999
Q ss_pred CCCccc-cccccceeEEEecccc
Q 042164 194 ILPQEW-VFVELQSYRICIGNKW 215 (235)
Q Consensus 194 ~~p~~~-~~~~L~~l~l~~~~~~ 215 (235)
.+|+.+ .|.+|++|++ .+|++
T Consensus 519 ~IPp~LgnmtnL~hLeL-~gNpf 540 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLEL-DGNPF 540 (565)
T ss_pred hCChhhccccceeEEEe-cCCcc
Confidence 999888 8999999998 56665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=4.8e-20 Score=153.15 Aligned_cols=195 Identities=21% Similarity=0.313 Sum_probs=136.6
Q ss_pred cCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCC-CcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEE
Q 042164 6 RKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNG-PMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTL 83 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 83 (235)
+.+|.+|++.+|++..+-... .++.|+.+.+ ..++. ..-+|..+| .+..|++||+++|++..+|..+..-+++-+|
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~-R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIV-RDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhh-hccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 446666777777666554433 6777777776 33332 123566654 6777778888888777777777777777888
Q ss_pred eccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 84 CLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 84 ~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
++++|.+..+ +.+.++..|-.||++.|++..+|+.+.++..|+.|.+++|+ ...+.-..+..+++|+.|++++..-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 8888887777 55667777778888888888887777777888888888776 33333222445556667777665443
Q ss_pred ccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEEE
Q 042164 162 WDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRIC 210 (235)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~ 210 (235)
...++.++..+.+|+.+|+|.|.+..+|..+ ..++|++|+++
T Consensus 211 -------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 211 -------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred -------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccC
Confidence 2256667777888899999999998888888 88888888885
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.2e-20 Score=148.99 Aligned_cols=188 Identities=24% Similarity=0.315 Sum_probs=125.5
Q ss_pred CcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccC
Q 042164 9 PIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDW 87 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 87 (235)
++.++.++|.+..+|+.. .+..++.++. ..+....+++++ +.+..++.++..+|+++.+|+.+..+.++..+++.+
T Consensus 93 l~~l~vs~n~ls~lp~~i~s~~~l~~l~~--s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 93 LKSLNVSHNKLSELPEQIGSLISLVKLDC--SSNELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG 169 (565)
T ss_pred HHHhhcccchHhhccHHHhhhhhhhhhhc--cccceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhccc
Confidence 445555666666666655 5666666665 444444555553 566667777777777777777777777777777777
Q ss_pred cCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccC
Q 042164 88 CQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVE 166 (235)
Q Consensus 88 ~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 166 (235)
|.+.+. +..-.+++|+++|...|.++.+|+.++.+.+|..|++..|+ +..+|+ |.+|..|.++++..|.+...
T Consensus 170 n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe--f~gcs~L~Elh~g~N~i~~l--- 243 (565)
T KOG0472|consen 170 NKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE--FPGCSLLKELHVGENQIEML--- 243 (565)
T ss_pred cchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC--CCccHHHHHHHhcccHHHhh---
Confidence 776665 33334777777777777777777777777777777777777 666663 67777777777777776622
Q ss_pred CCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEEE
Q 042164 167 GGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRIC 210 (235)
Q Consensus 167 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~ 210 (235)
..+..++++++..||+..|+++++|..+ -..+|.+|+++
T Consensus 244 -----pae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 244 -----PAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred -----HHHHhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 2234447777777777777777777777 66667777775
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=9.2e-16 Score=141.85 Aligned_cols=206 Identities=21% Similarity=0.256 Sum_probs=117.5
Q ss_pred CCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCcc-CCCCChhhcCCccCcEEe
Q 042164 7 KGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIH-FSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~ 84 (235)
.+|+.|++.++.+..++... .+++|+.+++ +.+..+..+|. ++.+++|+.|++++|. +..+|..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L-s~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL-RGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEEC-CCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 45666666666666665555 6677777777 44444555554 4566777777776653 445666666677777777
Q ss_pred ccCcC-CCCccccCCCC---------------------CCcEEEecCCCCCCcchhh-----------------------
Q 042164 85 LDWCQ-LEDVAAIGQLK---------------------KLEILSFRGSNIKQLPLEI----------------------- 119 (235)
Q Consensus 85 l~~~~-l~~~~~~~~l~---------------------~L~~L~l~~~~~~~~~~~~----------------------- 119 (235)
+++|. +..++....++ +|++|++++|.+..+|..+
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 76653 33331111223 3444444444444443221
Q ss_pred -------ccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCC-----------ccchhc-ccCC
Q 042164 120 -------GQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSN-----------ASLAEL-KGLS 180 (235)
Q Consensus 120 -------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-----------~~~~~~-~~~~ 180 (235)
..+++|+.|++++|...+.+|.. ++++++|+.|++++|......+.+... .....+ ...+
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence 01235666666666555666665 677777888887766321110110000 000000 1124
Q ss_pred CccceeeecCCCCCCCccc-cccccceeEEEeccccc
Q 042164 181 KLTTLNIQVPDAQILPQEW-VFVELQSYRICIGNKWW 216 (235)
Q Consensus 181 ~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~~ 216 (235)
+|+.|++++|.+..+|.++ .+++|+.|++..|+.+.
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC
Confidence 6778888888888888877 78888888887777663
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=8.2e-18 Score=144.71 Aligned_cols=210 Identities=23% Similarity=0.330 Sum_probs=144.8
Q ss_pred cCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCC-CcEEeecCccCCCCCh-hhcCCccCcE
Q 042164 6 RKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEE-LKVLDFTGIHFSSLPS-SLGRLINLQT 82 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~-~l~~l~~L~~ 82 (235)
..+++.++...|.++.+|+.. .++.|++|++ ..+.+...|+.+|..... ++.|..+-|.+...|. +=..++.|+.
T Consensus 286 ~~~L~~l~~~~nel~yip~~le~~~sL~tLdL--~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL--QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhhHHHHHhhhhhhhhCCCcccccceeeeeee--hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH
Confidence 456677777777787787777 6888888888 666666677766555444 6666666666665552 1123567777
Q ss_pred EeccCcCCCC-c-cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccc
Q 042164 83 LCLDWCQLED-V-AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISF 159 (235)
Q Consensus 83 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 159 (235)
|++.+|.+.+ + +.+.++++|+.|++++|.+.++|.. +.++..|++|++++|+ ...+|.. +..+..|++|...+|.
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t-va~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDT-VANLGRLHTLRAHSNQ 441 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHH-HHhhhhhHHHhhcCCc
Confidence 8888887773 3 7777888888888888888888776 6778888888888887 7777765 6777888888888887
Q ss_pred ccccccCCCCCccchhcccCCCccceeeecCCCC--CCCccccccccceeEEEecccccccchhhhhhhhhcccc
Q 042164 160 SQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ--ILPQEWVFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQ 232 (235)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~p~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~ 232 (235)
+. ..+.+..++.|+.+|+++|.++ .+|.....++|+.|+++ ||.+ ...+.+.+..+.++.
T Consensus 442 l~----------~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS-GN~~--l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 442 LL----------SFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS-GNTR--LVFDHKTLKVLKSLS 503 (1081)
T ss_pred ee----------echhhhhcCcceEEecccchhhhhhhhhhCCCcccceeecc-CCcc--cccchhhhHHhhhhh
Confidence 76 3347777888888888888876 34443344788888885 5544 233344444444443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=2.4e-17 Score=130.09 Aligned_cols=144 Identities=22% Similarity=0.313 Sum_probs=82.0
Q ss_pred EecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCcEEeccC-cC
Q 042164 12 ISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQTLCLDW-CQ 89 (235)
Q Consensus 12 L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~-~~ 89 (235)
++.++-.+++||... .+.-+++.| ..+.+..+|+..|+.+++|+.|||++|.|+.+ |+.|..++++-.+-+.+ |+
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirL--dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRL--DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEe--ccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 444444455555554 444555666 55666666666666666666666666666653 45566666665555544 56
Q ss_pred CCCc--cccCCCCCCcEEEecCCCCCCcch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccc
Q 042164 90 LEDV--AAIGQLKKLEILSFRGSNIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISF 159 (235)
Q Consensus 90 l~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 159 (235)
++++ ..|+.+.+++.|.+..|.+..+++ .+..++++..|.+.+|. +..+++..+..+.+++.+++..|.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 6655 556666666666666666664433 35666666666666665 444444334444555555544444
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=1.2e-15 Score=133.91 Aligned_cols=103 Identities=21% Similarity=0.341 Sum_probs=60.7
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
..++++.|++++|.++.+|... .++|+.|++ .++.+..+|..+ ...|+.|++++|.+..+|..+. .+|+.|+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~L--s~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYA--NSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLD 268 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEEC--CCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence 3456778888888887777655 357777777 344455566532 2356666666666666665442 3566666
Q ss_pred ccCcCCCCc-cccCCCCCCcEEEecCCCCCCcch
Q 042164 85 LDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPL 117 (235)
Q Consensus 85 l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 117 (235)
+++|.+..+ ..+. .+|++|++++|.++.+|.
T Consensus 269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred CcCCccCccccccC--CCCcEEECCCCccccCcc
Confidence 666665544 2221 356666666665555443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.61 E-value=4.3e-15 Score=130.37 Aligned_cols=116 Identities=16% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEecc
Q 042164 7 KGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLD 86 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~ 86 (235)
.+...|+++++.++.+|..+ .++++.|++ .++.+..+|...+ .+|+.|++++|.++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~L--s~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLIL--DNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEe--cCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 34566777776666666544 346667777 4445555665432 466777777777666665432 356777777
Q ss_pred CcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCc
Q 042164 87 WCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCW 134 (235)
Q Consensus 87 ~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 134 (235)
+|.+..+ ..+. .+|+.|+++.|.++.+|..+. ++|+.|++++|.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc
Confidence 7766655 2222 356777777776666665432 366666666665
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=1e-14 Score=135.03 Aligned_cols=145 Identities=26% Similarity=0.367 Sum_probs=88.4
Q ss_pred CCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCcc-CCCCChhhcCCccCcEEec
Q 042164 7 KGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIH-FSSLPSSLGRLINLQTLCL 85 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L~l 85 (235)
.+++.|++.++.+..+|..+.+.+|+.|++ .++.+..++..+ ..+++|+.|+++++. +..+|. +..+++|+.|++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L--~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQM--QGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEEC--cCcccccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 456677777777777776666677777777 444455555543 567777777777654 444553 666777777777
Q ss_pred cCcC-CCCc-cccCCCCCCcEEEecCC-CCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccc
Q 042164 86 DWCQ-LEDV-AAIGQLKKLEILSFRGS-NIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFS 160 (235)
Q Consensus 86 ~~~~-l~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 160 (235)
.+|. +..+ ..++.+++|+.|++++| .++.+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i 737 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAI 737 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcc
Confidence 7765 3444 56667777777777765 455666544 5666777777666534433321 23455555555544
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=6.1e-17 Score=127.80 Aligned_cols=199 Identities=22% Similarity=0.320 Sum_probs=116.9
Q ss_pred ccCCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecC-ccCCCCCh-hhcC----
Q 042164 5 IRKGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTG-IHFSSLPS-SLGR---- 76 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~---- 76 (235)
.+...+.+.|..|.|++||+.. .+++|+.|+| +.+.+..+.+..|.++.++..|-+++ |+|+.+|. .|..
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdL--S~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDL--SKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecc--cccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 3456677888888888887776 7788888888 55555556666677777776666655 67766653 3344
Q ss_pred --------------------CccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCC----------------------
Q 042164 77 --------------------LINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNI---------------------- 112 (235)
Q Consensus 77 --------------------l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~---------------------- 112 (235)
++++..|.+..|.++.+ ..+..+..++++.+..|.+
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 45555555555555544 3455555555554444430
Q ss_pred ---------------------------------------C-Ccch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCc
Q 042164 113 ---------------------------------------K-QLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLE 151 (235)
Q Consensus 113 ---------------------------------------~-~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 151 (235)
. ..|. .|..+++|+.|++++|+ ++.+...+|.....++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQ 301 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhhhhhhcchhhhh
Confidence 0 0111 25555666666666665 4444444455556666
Q ss_pred EEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCcc-c-cccccceeEEEecccc
Q 042164 152 ELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQE-W-VFVELQSYRICIGNKW 215 (235)
Q Consensus 152 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~-~-~~~~L~~l~l~~~~~~ 215 (235)
+|.+..|.+... .-..|.++..|+.|+|.+|+++.+.+. + ....|.+|.+ ..|.|
T Consensus 302 eL~L~~N~l~~v--------~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l-~~Np~ 358 (498)
T KOG4237|consen 302 ELYLTRNKLEFV--------SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL-LSNPF 358 (498)
T ss_pred hhhcCcchHHHH--------HHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh-ccCcc
Confidence 666666655422 345667777788888888887744332 2 4556666666 34443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.3e-14 Score=127.08 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=40.7
Q ss_pred CCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhh----------------hhCCCCCcEEeecCccCCCC
Q 042164 7 KGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHF----------------FEGTEELKVLDFTGIHFSSL 70 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------------~~~~~~L~~L~l~~~~~~~~ 70 (235)
++++.|++.+|.++.+|.. +++|+.|++ .++.+..+|... -..+..|+.|++++|.++.+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdL--s~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~L 297 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEV--SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 297 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEe--cCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccc
Confidence 4566677777777666643 466666666 333444444210 00112334444444444444
Q ss_pred ChhhcCCccCcEEeccCcCCCCc
Q 042164 71 PSSLGRLINLQTLCLDWCQLEDV 93 (235)
Q Consensus 71 ~~~l~~l~~L~~L~l~~~~l~~~ 93 (235)
|. ..++|++|++++|.+..+
T Consensus 298 P~---~p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 298 PV---LPPGLQELSVSDNQLASL 317 (788)
T ss_pred cc---cccccceeECCCCccccC
Confidence 43 125566666666665544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=5.1e-16 Score=133.87 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=127.1
Q ss_pred cCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 6 RKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
..+++.++++++.+..+|+-+ .|.+|+.+.. ..+.+..+|... ....+|+.|.+.+|.++.+|+....+++|++|+
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~--n~N~l~~lp~ri-~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNA--NHNRLVALPLRI-SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecc--cchhHHhhHHHH-hhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 456777777777777777443 7777777777 555556666664 567777777777777777777777778888888
Q ss_pred ccCcCCCCc--cccCC-------------------------CCCCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcCC
Q 042164 85 LDWCQLEDV--AAIGQ-------------------------LKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSL 136 (235)
Q Consensus 85 l~~~~l~~~--~~~~~-------------------------l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 136 (235)
+..|.+..+ ..+.. ...|+.|.+.+|.++ ..-+.+.+.++|+.|++++|. +
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L 395 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-L 395 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-c
Confidence 877776644 11111 122444555555555 222345566677777777776 6
Q ss_pred CCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEEecccc
Q 042164 137 EVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKW 215 (235)
Q Consensus 137 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~~~~~ 215 (235)
+.+|...+.+++.|++|++++|.++ ..+..+..++.|+.|..-+|.+..+|.....+.|+.+|++ +|.+
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~---------~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L 464 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT---------TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNL 464 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh---------hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchh
Confidence 6666666666667777777777666 3456666677777777777777777744477777777775 4433
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.56 E-value=1.1e-16 Score=131.66 Aligned_cols=184 Identities=24% Similarity=0.309 Sum_probs=153.9
Q ss_pred cCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 6 RKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
+..-...+++.|++..+|..+ .+..|+.+.+ ..+.+..+|..+ ..+..|+++|++.|+++.+|..++.|+ |+.+-
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liL--y~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLIL--YHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHH--Hhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 344567888888888888887 7788888888 445555566553 788899999999999999998888887 89999
Q ss_pred ccCcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccccc
Q 042164 85 LDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWD 163 (235)
Q Consensus 85 l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 163 (235)
+++|++..+ ..++...+|..++.+.|.+..+|..++.+.+|+.|.+..|. ...+|++ ++.++ |..|++++|++.
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~Lp-Li~lDfScNkis-- 224 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSLP-LIRLDFSCNKIS-- 224 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCCc-eeeeecccCcee--
Confidence 999999887 77888889999999999999999999999999999999997 7888888 66555 999999999998
Q ss_pred ccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccc
Q 042164 164 KVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQ 205 (235)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~ 205 (235)
.++..|..++.||+|.|++|++++-|..+......
T Consensus 225 -------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 225 -------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKV 259 (722)
T ss_pred -------ecchhhhhhhhheeeeeccCCCCCChHHHHhccce
Confidence 56888999999999999999999999888444443
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=3.2e-14 Score=124.62 Aligned_cols=182 Identities=20% Similarity=0.148 Sum_probs=101.8
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEecc-------------------CCCCCcccchhhhhCCCCCcEEeecCc
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFR-------------------EGNGPMQISDHFFEGTEELKVLDFTGI 65 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~-------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~ 65 (235)
.+++|++|++++|.++.+|.. .++|+.|++ . ..+.+..+|. .+++|+.|++++|
T Consensus 240 lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~L-s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N 312 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLPVL--PPGLLELSI-FSNPLTHLPALPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDN 312 (788)
T ss_pred CCCCCcEEEecCCccCcccCc--ccccceeec-cCCchhhhhhchhhcCEEECcCCccccccc----cccccceeECCCC
Confidence 357788888888888777654 234444444 1 2223333332 2367888889888
Q ss_pred cCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhc-----------------cCCCCcEE
Q 042164 66 HFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIG-----------------QLTRLQLL 128 (235)
Q Consensus 66 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------~l~~L~~L 128 (235)
.++.+|... .+|+.|++++|.+..++.+ ..+|+.|++++|+++.+|.... ...+|+.|
T Consensus 313 ~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~L 387 (788)
T PRK15387 313 QLASLPALP---SELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKEL 387 (788)
T ss_pred ccccCCCCc---ccccccccccCcccccccc--ccccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceE
Confidence 888766421 2344455555555444221 1245555555555554442110 11345556
Q ss_pred cccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-ccccccee
Q 042164 129 DLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSY 207 (235)
Q Consensus 129 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l 207 (235)
++++|. +..+|.. .++|+.|++++|.++.. +.. ..+|+.|++++|.++.+|..+ .+++|+.+
T Consensus 388 dLs~N~-Lt~LP~l----~s~L~~LdLS~N~LssI---------P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~L 450 (788)
T PRK15387 388 IVSGNR-LTSLPVL----PSELKELMVSGNRLTSL---------PML---PSGLLSLSVYRNQLTRLPESLIHLSSETTV 450 (788)
T ss_pred EecCCc-ccCCCCc----ccCCCEEEccCCcCCCC---------Ccc---hhhhhhhhhccCcccccChHHhhccCCCeE
Confidence 666655 3344431 23566666666666522 111 235777888888888888776 77888888
Q ss_pred EEEeccccc
Q 042164 208 RICIGNKWW 216 (235)
Q Consensus 208 ~l~~~~~~~ 216 (235)
++ .+|.+.
T Consensus 451 dL-s~N~Ls 458 (788)
T PRK15387 451 NL-EGNPLS 458 (788)
T ss_pred EC-CCCCCC
Confidence 88 466553
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=2.2e-15 Score=121.38 Aligned_cols=181 Identities=20% Similarity=0.173 Sum_probs=88.6
Q ss_pred CCCcEEecCCCCCC-----CCCCcC-CCCCccEEEeccCCCCCc-----ccchhhhhCCCCCcEEeecCccCCC-CChhh
Q 042164 7 KGPIAISLPQRDIQ-----ELPERL-QCPNLQLFLLFREGNGPM-----QISDHFFEGTEELKVLDFTGIHFSS-LPSSL 74 (235)
Q Consensus 7 ~~l~~L~l~~~~l~-----~i~~~~-~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l 74 (235)
.+++.++++++.++ .++... ..+.++.+++ +.+.... ......+..+++|+.|++++|.+.. .+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCL-SLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEec-cccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 34666666666653 233333 4555666666 3222210 0011123455666666666666553 22333
Q ss_pred cCCcc---CcEEeccCcCCCC-----c-cccCCC-CCCcEEEecCCCCC-----CcchhhccCCCCcEEcccCCcCCCC-
Q 042164 75 GRLIN---LQTLCLDWCQLED-----V-AAIGQL-KKLEILSFRGSNIK-----QLPLEIGQLTRLQLLDLSNCWSLEV- 138 (235)
Q Consensus 75 ~~l~~---L~~L~l~~~~l~~-----~-~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~- 138 (235)
..+.+ |++|++++|.+.. + ..+..+ ++|+.+++++|.++ .++..+..+++|++|++++|.+.+.
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 33333 6666666666551 1 334444 56666666666655 2233344555666666666653221
Q ss_pred ---CchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 139 ---IPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 139 ---~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
++.. +..+++|++|++++|.+.+. ........+..+++|+.|++++|.+.
T Consensus 182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~----~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 182 IRALAEG-LKANCNLEVLDLNNNGLTDE----GASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHH-HHhCCCCCEEeccCCccChH----HHHHHHHHhcccCCCCEEecCCCcCc
Confidence 1111 33445666666666655422 11112334445566666666666554
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=7.9e-15 Score=118.14 Aligned_cols=203 Identities=21% Similarity=0.206 Sum_probs=131.4
Q ss_pred cCCCcEEecCCCCCCCCC-------CcC-CCCCccEEEeccCCCCCcccchhhhhCCCC---CcEEeecCccCCC-----
Q 042164 6 RKGPIAISLPQRDIQELP-------ERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEE---LKVLDFTGIHFSS----- 69 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~-------~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~----- 69 (235)
.+++++++++++.+..++ ..+ .+++|+.|++ +.+......+. .+..+.. |++|++++|.++.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL-SDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc-cCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHH
Confidence 356888999888776322 222 6779999999 55444333332 2344444 9999999988873
Q ss_pred CChhhcCC-ccCcEEeccCcCCCC-----c-cccCCCCCCcEEEecCCCCC-----CcchhhccCCCCcEEcccCCcCCC
Q 042164 70 LPSSLGRL-INLQTLCLDWCQLED-----V-AAIGQLKKLEILSFRGSNIK-----QLPLEIGQLTRLQLLDLSNCWSLE 137 (235)
Q Consensus 70 ~~~~l~~l-~~L~~L~l~~~~l~~-----~-~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~ 137 (235)
+...+..+ ++|+.+++++|.++. + ..+..+++|++|++++|.++ .++..+..+++|++|++++|.+.+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 23345666 889999999998772 2 45667778999999999887 234445666799999999987332
Q ss_pred CCc---hhhhcCCCCCcEEEeccccccccccCCCCCccchhc-ccCCCccceeeecCCCC-----CCCccc-ccccccee
Q 042164 138 VIP---PNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL-KGLSKLTTLNIQVPDAQ-----ILPQEW-VFVELQSY 207 (235)
Q Consensus 138 ~~~---~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~-----~~p~~~-~~~~L~~l 207 (235)
... ...+..+++|++|++++|.++.. + .......+ ...+.|+.|++++|.+. .+.... .+++|+.+
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n~l~~~---~-~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDNNLTDA---G-AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCCcCchH---H-HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 211 12256778899999999887632 0 00011111 12478999999999875 222222 55788888
Q ss_pred EEEecccc
Q 042164 208 RICIGNKW 215 (235)
Q Consensus 208 ~l~~~~~~ 215 (235)
+++ ++..
T Consensus 284 ~l~-~N~l 290 (319)
T cd00116 284 DLR-GNKF 290 (319)
T ss_pred ECC-CCCC
Confidence 885 4433
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.50 E-value=8.4e-16 Score=126.46 Aligned_cols=188 Identities=22% Similarity=0.301 Sum_probs=159.4
Q ss_pred EEecCCCCCCCCCCcC---CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccC
Q 042164 11 AISLPQRDIQELPERL---QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDW 87 (235)
Q Consensus 11 ~L~l~~~~l~~i~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 87 (235)
+|.|++..++.+|... ++..-...++ +.+....+|.++ +.|..|+.+.++.|.+..+|..+..+..|.+++++.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDl--srNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADL--SRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhc--cccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 4677777888777665 4555556677 555666688774 788999999999999999999999999999999999
Q ss_pred cCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccC
Q 042164 88 CQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVE 166 (235)
Q Consensus 88 ~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 166 (235)
|+++.+ ..+..++ |+.|-+++|+++.+|..++..++|.+||.+.|. +..+|.+ ++.+.+|+.+.+..|.+.
T Consensus 131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~----- 202 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE----- 202 (722)
T ss_pred chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-----
Confidence 999987 5555555 999999999999999999988999999999998 7888888 899999999999999887
Q ss_pred CCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEEEecccc
Q 042164 167 GGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRICIGNKW 215 (235)
Q Consensus 167 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~ 215 (235)
..++.+..+| |..||+++|++..+|..+ .++.|+.|.+ .+|.+
T Consensus 203 ----~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~L-enNPL 246 (722)
T KOG0532|consen 203 ----DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQL-ENNPL 246 (722)
T ss_pred ----hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeee-ccCCC
Confidence 4577777665 888999999999999988 8889999988 67776
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.47 E-value=8.5e-15 Score=112.44 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=142.6
Q ss_pred cccCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCccc----chh-----h--------------hhCCCCCcE
Q 042164 4 TIRKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQI----SDH-----F--------------FEGTEELKV 59 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~----~~~-----~--------------~~~~~~L~~ 59 (235)
..|+++..+.++.|.-..|-... .-+.|+++.. .+.-+... |.. . ...-..|++
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v--~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICV--HNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeee--ecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 45678888888888766554443 4566666665 22221111 100 0 011255889
Q ss_pred EeecCccCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCC
Q 042164 60 LDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVI 139 (235)
Q Consensus 60 L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 139 (235)
+|+++|.|+.+.++..-.|.+++|++++|.+..+..++.+++|..||+++|.++.+..+-.++.+.+.|.++.|. +..+
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~L 367 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETL 367 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhh
Confidence 999999999998888889999999999999999988999999999999999999887777788899999999997 6666
Q ss_pred chhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCcc
Q 042164 140 PPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQE 198 (235)
Q Consensus 140 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~ 198 (235)
.. +..+.+|..|++++|+|... .....++.+|.|+.+.|.+|+++.+|..
T Consensus 368 SG--L~KLYSLvnLDl~~N~Ie~l-------deV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 368 SG--LRKLYSLVNLDLSSNQIEEL-------DEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hh--hHhhhhheeccccccchhhH-------HHhcccccccHHHHHhhcCCCccccchH
Confidence 54 78888999999999999743 3466888999999999999999877653
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.46 E-value=8.9e-14 Score=101.18 Aligned_cols=130 Identities=24% Similarity=0.268 Sum_probs=43.7
Q ss_pred hCCCCCcEEeecCccCCCCChhhc-CCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhh-ccCCCCcEEc
Q 042164 52 EGTEELKVLDFTGIHFSSLPSSLG-RLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEI-GQLTRLQLLD 129 (235)
Q Consensus 52 ~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~ 129 (235)
.....+++|+|++|.++.+- .+. .+.+|+.|++++|.+..+..+..+++|++|++++|.++++...+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 35556677777777776653 243 46677777777777777766667777777777777777665443 3567777777
Q ss_pred ccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceee
Q 042164 130 LSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNI 187 (235)
Q Consensus 130 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 187 (235)
+++|++...-.-..+..+++|+.|++.+|.+... ...-...+..+|+|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-----KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-----TTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccch-----hhHHHHHHHHcChhheeCC
Confidence 7777632211112256677777777777776522 1223445566777776663
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.45 E-value=7.8e-14 Score=101.47 Aligned_cols=139 Identities=24% Similarity=0.279 Sum_probs=55.4
Q ss_pred cCccCCCCChhhcCCccCcEEeccCcCCCCccccC-CCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCch
Q 042164 63 TGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIG-QLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPP 141 (235)
Q Consensus 63 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 141 (235)
..+.+...+. +....++++|++.+|.++.+..++ .+.+|+.|+++.|.++.+. .+..++.|+.|++++|. ++.+.+
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~ 81 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISE 81 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CH
T ss_pred cccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCcccc
Confidence 3344444443 456668999999999999987777 5889999999999999875 46779999999999998 667765
Q ss_pred hhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-----cccccceeEEEe
Q 042164 142 NVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-----VFVELQSYRICI 211 (235)
Q Consensus 142 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-----~~~~L~~l~l~~ 211 (235)
.....+++|++|++++|.+... .....++.+++|+.|++.+|++..-+.-- .+|+|+.||-..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l-------~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDL-------NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SC-------CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCcCCCh-------HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 4335689999999999999744 34677888999999999999997544422 778888887643
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.3e-14 Score=112.60 Aligned_cols=202 Identities=23% Similarity=0.151 Sum_probs=135.6
Q ss_pred cCCCcEEecCCCCCCCCCC--cC-CCCCccEEEeccCCCCCcc-cchhhhhCCCCCcEEeecCccCCCCChh--hcCCcc
Q 042164 6 RKGPIAISLPQRDIQELPE--RL-QCPNLQLFLLFREGNGPMQ-ISDHFFEGTEELKVLDFTGIHFSSLPSS--LGRLIN 79 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~--~~-~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~--l~~l~~ 79 (235)
+.+|+.+.+.++.+...+. .. .|++++.|++ +.+-.... ....+.+.+++|+.|+++.|.+....+. -..+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdL-S~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDL-SRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecc-hhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4678888888888875553 33 7888888888 44444332 2233456788889999988887643221 135788
Q ss_pred CcEEeccCcCCC--Cc-cccCCCCCCcEEEecCCC-CCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEe
Q 042164 80 LQTLCLDWCQLE--DV-AAIGQLKKLEILSFRGSN-IKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYM 155 (235)
Q Consensus 80 L~~L~l~~~~l~--~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 155 (235)
|+.|.++.|.++ ++ .....+++++.|++.+|. +.........+..|+.||+++|.++..-.....+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 888888888887 34 555678888888888884 33222233456788899999987544332334788888999999
Q ss_pred ccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc---cccccceeEEE
Q 042164 156 DISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW---VFVELQSYRIC 210 (235)
Q Consensus 156 ~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~---~~~~L~~l~l~ 210 (235)
+.+.+.+...+. .........+++|+.|+++.|++++++.-- ..++|++|.+.
T Consensus 279 s~tgi~si~~~d--~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 279 SSTGIASIAEPD--VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred cccCcchhcCCC--ccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 988887551111 112223456788999999999986555433 66778888763
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.1e-13 Score=107.58 Aligned_cols=194 Identities=17% Similarity=0.160 Sum_probs=141.6
Q ss_pred CCCCccEEEeccCCCCCcccch-hhhhCCCCCcEEeecCccCCC---CChhhcCCccCcEEeccCcCCCCc---cccCCC
Q 042164 27 QCPNLQLFLLFREGNGPMQISD-HFFEGTEELKVLDFTGIHFSS---LPSSLGRLINLQTLCLDWCQLEDV---AAIGQL 99 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~---~~~~~l 99 (235)
++++|+...+ ++......+. +....|++++.||++.|-+.. +.....++|+|+.|+++.|.+... ..-..+
T Consensus 119 n~kkL~~IsL--dn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISL--DNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheee--cCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 8999999999 7766665553 345789999999999998774 345568899999999999998844 223367
Q ss_pred CCCcEEEecCCCCC--CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcc
Q 042164 100 KKLEILSFRGSNIK--QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELK 177 (235)
Q Consensus 100 ~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 177 (235)
++++.|.++.|.++ .+......+|+|+.|.+..|......... ..-+..|++|++++|.+-.. +.....+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~-------~~~~~~~ 268 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF-------DQGYKVG 268 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc-------ccccccc
Confidence 89999999999988 44444668999999999999422222111 34456799999999987633 3346778
Q ss_pred cCCCccceeeecCCCC--CCCcc------ccccccceeEEEecccccccchhhhhhhhhcccc
Q 042164 178 GLSKLTTLNIQVPDAQ--ILPQE------WVFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQ 232 (235)
Q Consensus 178 ~~~~L~~L~l~~n~~~--~~p~~------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~ 232 (235)
.+|.|+.|.++.+.+. ..|.. ..|++|+.|.+..++. ..|.....+-.+++|+
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I--~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI--RDWRSLNHLRTLENLK 329 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc--ccccccchhhccchhh
Confidence 8999999999999986 34444 2899999999965543 3555334444443333
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=4.3e-12 Score=105.34 Aligned_cols=169 Identities=28% Similarity=0.367 Sum_probs=79.5
Q ss_pred CCCCccEEEeccCCCCCcccchhhhhCCC-CCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCcccc-CCCCCCcE
Q 042164 27 QCPNLQLFLLFREGNGPMQISDHFFEGTE-ELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAI-GQLKKLEI 104 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~l~~L~~ 104 (235)
....++.+.+ .++.+..++... ..+. +|+.|++++|.+..+|..+..+++|+.|+++.|.+.++... +..+.|+.
T Consensus 114 ~~~~l~~L~l--~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDL--DNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEec--CCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3444555555 444444444432 2232 55555555555555544455555555555555555555222 24555555
Q ss_pred EEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccc
Q 042164 105 LSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTT 184 (235)
Q Consensus 105 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~ 184 (235)
+++++|.+..+|........|+.+.++.|.... .+.. +..+.++..+.+..|++. .....++.+++++.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l~~l~l~~n~~~---------~~~~~~~~l~~l~~ 259 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNLSGLELSNNKLE---------DLPESIGNLSNLET 259 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccccccccCCceee---------eccchhccccccce
Confidence 555555555555444444445555555553122 2211 344444444444444443 11334444444555
Q ss_pred eeeecCCCCCCCccccccccceeEE
Q 042164 185 LNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 185 L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
|++++|.+..++......+++.+++
T Consensus 260 L~~s~n~i~~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 260 LDLSNNQISSISSLGSLTNLRELDL 284 (394)
T ss_pred eccccccccccccccccCccCEEec
Confidence 5555555554444224444444444
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=6.4e-12 Score=104.30 Aligned_cols=178 Identities=26% Similarity=0.297 Sum_probs=143.6
Q ss_pred CCCcEEecCCCCCCCCCCcC-CCC-CccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 7 KGPIAISLPQRDIQELPERL-QCP-NLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~-~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
+.++.+++.++.+..+++.. ..+ +|+.|++ ..+.+..++.. ...++.|+.|++++|.++.+|......+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l--~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDL--SDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccc--cccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 46888999999999998888 443 8999999 66777767544 4789999999999999999988766899999999
Q ss_pred ccCcCCCCccc-cCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccccc
Q 042164 85 LDWCQLEDVAA-IGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWD 163 (235)
Q Consensus 85 l~~~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 163 (235)
+++|++..++. ......|.++.+++|.+...+..+.++.++..+.+..|+ ...++.. ++.+++++.+++++|.++..
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccccc
Confidence 99999998844 456677999999999777777778888899988888887 4443443 78888899999999998822
Q ss_pred ccCCCCCccchhcccCCCccceeeecCCCCCCCccc
Q 042164 164 KVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW 199 (235)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~ 199 (235)
.. ++...+++.+++++|.+..++...
T Consensus 271 ---------~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 271 ---------SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ---------cc-ccccCccCEEeccCccccccchhh
Confidence 22 778889999999999887555444
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=3.3e-12 Score=99.81 Aligned_cols=181 Identities=17% Similarity=0.144 Sum_probs=82.6
Q ss_pred cCCCcEEecCCCCCC-----CCCCcC-CCCCccEEEeccCCCCCcc----cchh------hhhCCCCCcEEeecCccCCC
Q 042164 6 RKGPIAISLPQRDIQ-----ELPERL-QCPNLQLFLLFREGNGPMQ----ISDH------FFEGTEELKVLDFTGIHFSS 69 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~-----~i~~~~-~l~~L~~L~l~~~~~~~~~----~~~~------~~~~~~~L~~L~l~~~~~~~ 69 (235)
+..++.+++++|.+. .+.+.+ ..++|+..++ .+.+.+. +|+. .+.+++.|++|+|++|-+..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~--sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNL--SDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeeh--HhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 456677777777764 233333 4445555555 3333332 1211 11344566666666665541
Q ss_pred --CC---hhhcCCccCcEEeccCcCCCCc---------------cccCCCCCCcEEEecCCCCCCc-----chhhccCCC
Q 042164 70 --LP---SSLGRLINLQTLCLDWCQLEDV---------------AAIGQLKKLEILSFRGSNIKQL-----PLEIGQLTR 124 (235)
Q Consensus 70 --~~---~~l~~l~~L~~L~l~~~~l~~~---------------~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~ 124 (235)
++ +-+.++..|++|.+.+|.+... ...+.-+.|+++....|++... ...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 21 1234455666666666655421 1233344555555555554421 122444455
Q ss_pred CcEEcccCCcCCCC---CchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCC
Q 042164 125 LQLLDLSNCWSLEV---IPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDA 192 (235)
Q Consensus 125 L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 192 (235)
|+.+.+..|.+-.. .-.+.+.+|++|+.|++..|-++.. ....+...+..+++|++|.++.|.+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----gs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----GSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----HHHHHHHHhcccchheeeccccccc
Confidence 55555555542110 1122244555555555555544322 1122333444444555555554444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=5.4e-12 Score=97.21 Aligned_cols=127 Identities=22% Similarity=0.295 Sum_probs=86.2
Q ss_pred cccCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcE
Q 042164 4 TIRKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQT 82 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~ 82 (235)
..++-++++|+++|.|+.|-+.. -.|.++.|++ +.+.+..+.. ++.+.+|+.||+++|.++.+...=..+-+.+.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~l--S~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLIL--SQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEec--cccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34556777777777777666655 5677777777 4444444443 35677777777777777665443456667777
Q ss_pred EeccCcCCCCccccCCCCCCcEEEecCCCCCCc--chhhccCCCCcEEcccCCc
Q 042164 83 LCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQL--PLEIGQLTRLQLLDLSNCW 134 (235)
Q Consensus 83 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~ 134 (235)
|.+..|.++.+..++++.+|..||+.+|+|..+ ...++++|.|+++.+.+|+
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777777777777777777777777777777643 3347777777777777776
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=1.6e-11 Score=96.02 Aligned_cols=199 Identities=18% Similarity=0.174 Sum_probs=127.9
Q ss_pred CCCcEEecCCCC----CCCCCCcC--------CCCCccEEEeccCCCCCcccchh---hhhCCCCCcEEeecCccCCCCC
Q 042164 7 KGPIAISLPQRD----IQELPERL--------QCPNLQLFLLFREGNGPMQISDH---FFEGTEELKVLDFTGIHFSSLP 71 (235)
Q Consensus 7 ~~l~~L~l~~~~----l~~i~~~~--------~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~ 71 (235)
+++++.+++.-. ...+|+.. .+++|++++| ++|.+-...++. ++..+..|++|++.+|+++...
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL-SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a 136 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL-SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA 136 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec-cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH
Confidence 467777776432 22444432 6778999999 777765544432 3456788889999988886321
Q ss_pred -----hh---------hcCCccCcEEeccCcCCCCc------cccCCCCCCcEEEecCCCCC--C---cchhhccCCCCc
Q 042164 72 -----SS---------LGRLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRGSNIK--Q---LPLEIGQLTRLQ 126 (235)
Q Consensus 72 -----~~---------l~~l~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~~~~~--~---~~~~~~~l~~L~ 126 (235)
.. ...=+.||++.+.+|.+..- ..+...+.|+.+.+..|.|. . +...+..+++|+
T Consensus 137 g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 137 GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE 216 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce
Confidence 11 22336788888888887632 56677788888888888776 2 234577888899
Q ss_pred EEcccCCcCCCCCc---hhhhcCCCCCcEEEeccccccccccCCCCCccchhc-ccCCCccceeeecCCCCCC-----Cc
Q 042164 127 LLDLSNCWSLEVIP---PNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL-KGLSKLTTLNIQVPDAQIL-----PQ 197 (235)
Q Consensus 127 ~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~-----p~ 197 (235)
.||+++|.+...-. ...++.++.|+++++++|.+... | +......+ ...|+|++|.+.+|.++.- ..
T Consensus 217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~---G-a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE---G-AIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred eeecccchhhhHHHHHHHHHhcccchheeecccccccccc---c-HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 99998886432211 12367778888888888887633 2 12222222 2467888888888887511 11
Q ss_pred cc-cccccceeEEE
Q 042164 198 EW-VFVELQSYRIC 210 (235)
Q Consensus 198 ~~-~~~~L~~l~l~ 210 (235)
.. ..+.|..|++.
T Consensus 293 ~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLN 306 (382)
T ss_pred HHhcchhhHHhcCC
Confidence 11 55777888884
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=4.6e-10 Score=100.61 Aligned_cols=151 Identities=28% Similarity=0.424 Sum_probs=117.1
Q ss_pred cCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCC-CCcccchhhhhCCCCCcEEeecCcc-CCCCChhhcCCccCcEE
Q 042164 6 RKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGN-GPMQISDHFFEGTEELKVLDFTGIH-FSSLPSSLGRLINLQTL 83 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~L~~L 83 (235)
+..++++.+.++.+..++....++.|++|-+ ..+. ....++..+|..++.|++||+++|. +.++|..++.+.+||+|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll-~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLL-QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccchhhccCCCCCCccceEEE-eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3467889999999988888888889999998 4444 2677788888999999999999764 66799999999999999
Q ss_pred eccCcCCCCc-cccCCCCCCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcC-C-CCCchhhhcCCCCCcEEEeccc
Q 042164 84 CLDWCQLEDV-AAIGQLKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWS-L-EVIPPNVISKLSRLEELYMDIS 158 (235)
Q Consensus 84 ~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~-~-~~~~~~~l~~~~~L~~L~l~~n 158 (235)
+++++.+..+ ..++.++.|.+|++..+... .+|.....+.+|++|.+..... . ...-.+ +..+.+|+.+.....
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITIS 678 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeecc
Confidence 9999999988 88999999999999988544 5566667799999998876531 1 111122 455566666555433
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=7.6e-11 Score=98.42 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=16.5
Q ss_pred ccceeeecCCCCCCCccc-cccccceeEE
Q 042164 182 LTTLNIQVPDAQILPQEW-VFVELQSYRI 209 (235)
Q Consensus 182 L~~L~l~~n~~~~~p~~~-~~~~L~~l~l 209 (235)
|+.+++++|++..++..+ .+..+..+++
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDL 262 (414)
T ss_pred HHHHhcccCccccccccccccccccccch
Confidence 667777777776654222 5555555555
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.94 E-value=6.6e-12 Score=106.68 Aligned_cols=127 Identities=24% Similarity=0.240 Sum_probs=95.4
Q ss_pred CcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCC
Q 042164 57 LKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSL 136 (235)
Q Consensus 57 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 136 (235)
|.+.+.++|.+..+...++-++.+++|++++|++..+..+..++.|++||+++|.+..+|.--..-.+|+.|.+++|. .
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-L 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccH-H
Confidence 455566777777777778888888999999998888888888888999999998888777642222348888888887 4
Q ss_pred CCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 137 EVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 137 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
..+-. +.++.+|+.|++++|-+.+. .-+..+..+..|++|.|.||++.
T Consensus 245 ~tL~g--ie~LksL~~LDlsyNll~~h-------seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 245 TTLRG--IENLKSLYGLDLSYNLLSEH-------SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhhhh--HHhhhhhhccchhHhhhhcc-------hhhhHHHHHHHHHHHhhcCCccc
Confidence 44443 67788888888888877644 33455566677888888888874
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.90 E-value=6.3e-09 Score=91.01 Aligned_cols=81 Identities=27% Similarity=0.425 Sum_probs=43.4
Q ss_pred CcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEec
Q 042164 80 LQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMD 156 (235)
Q Consensus 80 L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 156 (235)
++.|++++|.+.+. ..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|.. ++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 44555555555432 44555555555555555554 44555555555555555555544455544 5555555555555
Q ss_pred ccccc
Q 042164 157 ISFSQ 161 (235)
Q Consensus 157 ~n~~~ 161 (235)
+|.++
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 55554
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=1.9e-10 Score=96.07 Aligned_cols=167 Identities=25% Similarity=0.296 Sum_probs=118.9
Q ss_pred CCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEe
Q 042164 28 CPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSF 107 (235)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l 107 (235)
+..+..+.+ ..+.+...... ...+.+++.|++.+|.+..+...+..+++|+++++++|.+..+..+..+..|+.|++
T Consensus 71 l~~l~~l~l--~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNL--RQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhcc--chhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 444555555 44444442322 367888999999999998876557889999999999999998888888888999999
Q ss_pred cCCCCCCcchhhccCCCCcEEcccCCcCCCCCch-hhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCcccee
Q 042164 108 RGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPP-NVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLN 186 (235)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 186 (235)
.+|.++.+.. +..++.|+.+++++|. +..+.. . ...+.+++.+++..|.+. ....+.....+..++
T Consensus 148 ~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~----------~i~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 148 SGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR----------EIEGLDLLKKLVLLS 214 (414)
T ss_pred ccCcchhccC-CccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh----------cccchHHHHHHHHhh
Confidence 9999887643 3448889999999987 555544 2 367888999999998887 334444455566668
Q ss_pred eecCCCCCCCccccccc--cceeEEE
Q 042164 187 IQVPDAQILPQEWVFVE--LQSYRIC 210 (235)
Q Consensus 187 l~~n~~~~~p~~~~~~~--L~~l~l~ 210 (235)
+..|.+..+-....... |+.+++.
T Consensus 215 l~~n~i~~~~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 215 LLDNKISKLEGLNELVMLHLRELYLS 240 (414)
T ss_pred cccccceeccCcccchhHHHHHHhcc
Confidence 88888764443322333 7777774
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.4e-09 Score=64.47 Aligned_cols=58 Identities=33% Similarity=0.497 Sum_probs=26.7
Q ss_pred CCcEEEecCCCCCCcch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccc
Q 042164 101 KLEILSFRGSNIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISF 159 (235)
Q Consensus 101 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 159 (235)
+|++|++++|.++.+|. .|..+++|++|++++|. +..+++.++..+++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444443 24444455555555444 334444434444445555444443
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.85 E-value=9.3e-09 Score=89.96 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=87.6
Q ss_pred CCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccC
Q 042164 101 KLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGL 179 (235)
Q Consensus 101 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 179 (235)
.++.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|.. ++.+++|+.|++++|.+++. ++..++.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~--------iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS--------IPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCC--------CchHHhcC
Confidence 3788999999998 78888999999999999999977889887 89999999999999999854 67788999
Q ss_pred CCccceeeecCCCC-CCCccc--cccccceeEEEe
Q 042164 180 SKLTTLNIQVPDAQ-ILPQEW--VFVELQSYRICI 211 (235)
Q Consensus 180 ~~L~~L~l~~n~~~-~~p~~~--~~~~L~~l~l~~ 211 (235)
++|+.|+|++|.+. .+|..+ ...++..+++..
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 99999999999997 888876 234566777753
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3e-09 Score=64.02 Aligned_cols=61 Identities=30% Similarity=0.334 Sum_probs=51.8
Q ss_pred CCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCC
Q 042164 123 TRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDA 192 (235)
Q Consensus 123 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 192 (235)
++|+.|++++|+ +..++...+..+++|++|++++|.++.. ....+.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i--------~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSI--------PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEE--------ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCcc--------CHHHHcCCCCCCEEeCcCCcC
Confidence 578899999997 7788877789999999999999998844 456788999999999999874
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=2.6e-09 Score=82.40 Aligned_cols=193 Identities=21% Similarity=0.226 Sum_probs=115.3
Q ss_pred CccEEEeccCCCCCcccch--hhhhCCCCCcEEeecCccCCC---CChhhcCCccCcEEeccCcCCCCc-ccc-CCCCCC
Q 042164 30 NLQLFLLFREGNGPMQISD--HFFEGTEELKVLDFTGIHFSS---LPSSLGRLINLQTLCLDWCQLEDV-AAI-GQLKKL 102 (235)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~-~~~-~~l~~L 102 (235)
.++.+.+ .+..+....+ .+.+.+..++++|+.+|.++. +...+..+|.|++|+++.|.+... ... ....+|
T Consensus 46 a~ellvl--n~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVL--NGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred chhhhee--cCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3444555 3344433332 223567889999999999873 666678999999999999998854 555 477899
Q ss_pred cEEEecCCCCC--CcchhhccCCCCcEEcccCCcCCCC-CchhhhcCC-CCCcEEEeccccccccccCCCCCccchhccc
Q 042164 103 EILSFRGSNIK--QLPLEIGQLTRLQLLDLSNCWSLEV-IPPNVISKL-SRLEELYMDISFSQWDKVEGGSNASLAELKG 178 (235)
Q Consensus 103 ~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 178 (235)
++|-+.++.+. .....+..+|.++.+++++|.+... +..+-.... +.+.++++..|... .+.........
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~------~w~~~~~l~r~ 197 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ------LWLNKNKLSRI 197 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH------HHHHHHhHHhh
Confidence 99999988655 5555678899999999999842110 111101222 24566666666443 11222333344
Q ss_pred CCCccceeeecCCCCCCCccc---cccccceeEEEecccccccchhhhhhhhhcccc
Q 042164 179 LSKLTTLNIQVPDAQILPQEW---VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQ 232 (235)
Q Consensus 179 ~~~L~~L~l~~n~~~~~p~~~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~ 232 (235)
+|++..+.+..|++++....- .++.+..|.+...+ ++.|...+.+++++.|.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~--idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN--IDSWASVDALNGFPQLV 252 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccc--cccHHHHHHHcCCchhh
Confidence 566666666666665444433 44444444442222 33555555555555544
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=7.7e-09 Score=92.92 Aligned_cols=159 Identities=25% Similarity=0.344 Sum_probs=117.8
Q ss_pred CCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCcc--CCCCCh-hhcCCccCcEEeccCcC-CCCc-
Q 042164 19 IQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIH--FSSLPS-SLGRLINLQTLCLDWCQ-LEDV- 93 (235)
Q Consensus 19 l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~-~l~~l~~L~~L~l~~~~-l~~~- 93 (235)
...+|...+....+...+ .++.+..++.. ..++.|+.|-+..|. +..++. .|..++.|++|++++|. +..+
T Consensus 513 ~~~~~~~~~~~~~rr~s~--~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSL--MNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccccccchhheeEEEE--eccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 334666666777888888 66666666654 356689999998886 556654 47889999999999876 5567
Q ss_pred cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccc
Q 042164 94 AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASL 173 (235)
Q Consensus 94 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 173 (235)
..++.+-+|++|+++.+.+..+|..++++++|.+|++..+.....+ +.+...+.+|++|.+...... ......
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~------~~~~~l 661 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS------NDKLLL 661 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccc------cchhhH
Confidence 8899999999999999999999999999999999999988744444 444667999999998776532 112234
Q ss_pred hhcccCCCccceeee
Q 042164 174 AELKGLSKLTTLNIQ 188 (235)
Q Consensus 174 ~~~~~~~~L~~L~l~ 188 (235)
..+..+++|+.+...
T Consensus 662 ~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 662 KELENLEHLENLSIT 676 (889)
T ss_pred Hhhhcccchhhheee
Confidence 444555555555443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=2.1e-10 Score=97.82 Aligned_cols=122 Identities=21% Similarity=0.295 Sum_probs=93.5
Q ss_pred cCcEEeccCcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecc
Q 042164 79 NLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDI 157 (235)
Q Consensus 79 ~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 157 (235)
.|.+.++++|.+..+ .++.-++.++.|+++.|+++... .+..+++|++||+++|. ...+|.---..| +|..|.+.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecc
Confidence 455566777777766 77777888999999999988664 67889999999999997 666664211233 499999999
Q ss_pred ccccccccCCCCCccchhcccCCCccceeeecCCCC---CCCccccccccceeEEEeccc
Q 042164 158 SFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ---ILPQEWVFVELQSYRICIGNK 214 (235)
Q Consensus 158 n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~p~~~~~~~L~~l~l~~~~~ 214 (235)
|.++ .+..+.++.+|+.||++.|-+. .+-.-+.+..|+.|++. ||.
T Consensus 242 N~l~----------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le-GNP 290 (1096)
T KOG1859|consen 242 NALT----------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE-GNP 290 (1096)
T ss_pred cHHH----------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc-CCc
Confidence 9887 5677888999999999999875 44444478889999995 444
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.6e-10 Score=89.05 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=86.7
Q ss_pred CCCcEEeecCccCC--CCChhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCC-CCCCc--chhhccCCCCcE
Q 042164 55 EELKVLDFTGIHFS--SLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGS-NIKQL--PLEIGQLTRLQL 127 (235)
Q Consensus 55 ~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~-~~~~~--~~~~~~l~~L~~ 127 (235)
..|+.+|+++..++ .+...+..|.+|+.+.+.++.+.+- ..++.-..|+.++++.+ .++.. .-.+.+|..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 34778888877776 3555667778888888888887743 66777777888888776 55533 234677788888
Q ss_pred EcccCCcCCCCCchhhhcC-CCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCC-CC-CCCccc-cccc
Q 042164 128 LDLSNCWSLEVIPPNVISK-LSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPD-AQ-ILPQEW-VFVE 203 (235)
Q Consensus 128 L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~-~~p~~~-~~~~ 203 (235)
|++++|....+....+..+ -++|..|++++.+-.- .......-...+|+|.+|||+.|. ++ ++-..+ .|+.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 8888775433221111111 2455566665542110 001122233455666666665443 22 222222 5555
Q ss_pred cceeEEEeccc
Q 042164 204 LQSYRICIGNK 214 (235)
Q Consensus 204 L~~l~l~~~~~ 214 (235)
|+++.++.|-.
T Consensus 340 L~~lSlsRCY~ 350 (419)
T KOG2120|consen 340 LQHLSLSRCYD 350 (419)
T ss_pred heeeehhhhcC
Confidence 55555554443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6e-10 Score=85.90 Aligned_cols=175 Identities=22% Similarity=0.235 Sum_probs=117.7
Q ss_pred CCCcEEecCCCCCC--CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCc-cCCC--CChhhcCCccC
Q 042164 7 KGPIAISLPQRDIQ--ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGI-HFSS--LPSSLGRLINL 80 (235)
Q Consensus 7 ~~l~~L~l~~~~l~--~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~l~~l~~L 80 (235)
..++++|+++..|+ .+-... .|.+|+.+.+ ........+... +++-..|+.|+++++ +++. +.-.+..|+.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl-Eg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL-EGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccc-cccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 35788888888876 232333 7888888888 444333444444 477888999999876 4664 33457889999
Q ss_pred cEEeccCcCCC-Cc--cccC-CCCCCcEEEecCCCCC----CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcE
Q 042164 81 QTLCLDWCQLE-DV--AAIG-QLKKLEILSFRGSNIK----QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEE 152 (235)
Q Consensus 81 ~~L~l~~~~l~-~~--~~~~-~l~~L~~L~l~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 152 (235)
..|++++|.+. +. ..+. --++|+.|+++++.-. .+..-..++++|.+||+++|-.+..--...+-+.+-|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 99999999865 22 2222 2357888888887422 333335678999999999885333322334777888999
Q ss_pred EEeccccccccccCCCCCccchhcccCCCccceeeecC
Q 042164 153 LYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVP 190 (235)
Q Consensus 153 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 190 (235)
+.++.|..- .+...-.++..|.|.+|++.|+
T Consensus 343 lSlsRCY~i-------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYDI-------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcCC-------ChHHeeeeccCcceEEEEeccc
Confidence 998888543 2345556777888999988875
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.55 E-value=4.2e-09 Score=72.31 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=71.8
Q ss_pred CcEEeccCcCCCCc----cccCCCCCCcEEEecCCCCCCcchhhcc-CCCCcEEcccCCcCCCCCchhhhcCCCCCcEEE
Q 042164 80 LQTLCLDWCQLEDV----AAIGQLKKLEILSFRGSNIKQLPLEIGQ-LTRLQLLDLSNCWSLEVIPPNVISKLSRLEELY 154 (235)
Q Consensus 80 L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 154 (235)
+..+++++|.+-.+ ..+.....|..+++++|.+..+|+.|.. .+.++.+++++|. +.++|.+ +..+++|+.++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcc
Confidence 33444444443322 3344455566677777777777766553 3467777777777 6777777 77777777777
Q ss_pred eccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccce
Q 042164 155 MDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQS 206 (235)
Q Consensus 155 l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~ 206 (235)
++.|.+. ..+..+..+.++-.|+..+|....+|-....+.+..
T Consensus 107 l~~N~l~---------~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~a 149 (177)
T KOG4579|consen 107 LRFNPLN---------AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPA 149 (177)
T ss_pred cccCccc---------cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHH
Confidence 7777766 234555556667777777777776666654444433
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3e-08 Score=76.72 Aligned_cols=197 Identities=17% Similarity=0.101 Sum_probs=95.6
Q ss_pred CCcEEecCCCCCCCCCC---cC-CCCCccEEEeccCCCCCc-ccchhhhhCCCCCcEEeecCccCC--CCChhhcCCccC
Q 042164 8 GPIAISLPQRDIQELPE---RL-QCPNLQLFLLFREGNGPM-QISDHFFEGTEELKVLDFTGIHFS--SLPSSLGRLINL 80 (235)
Q Consensus 8 ~l~~L~l~~~~l~~i~~---~~-~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~l~~L 80 (235)
.++++++.+|.|+...+ .. ++|+|++|++ +++.+. .+.... ....+|++|-+.++.+. .....+..+|.+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNl--s~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNL--SCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeec--cCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45555566665553222 22 5566666666 333222 221110 23455566666555543 233334455555
Q ss_pred cEEeccCcCCCCc----cccCCCC-CCcEEEecCCCCC---CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcE
Q 042164 81 QTLCLDWCQLEDV----AAIGQLK-KLEILSFRGSNIK---QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEE 152 (235)
Q Consensus 81 ~~L~l~~~~l~~~----~~~~~l~-~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 152 (235)
+.+.++.|.+..+ .....+. .++++....|... ..-......+++..+.+..|++.+.-...-....+.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 5555555533211 1111111 2333333333221 111111234555555566665322222222344556667
Q ss_pred EEeccccccccccCCCCCccchhcccCCCccceeeecCCCCC-----CCccccccccceeEEEeccc
Q 042164 153 LYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQI-----LPQEWVFVELQSYRICIGNK 214 (235)
Q Consensus 153 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----~p~~~~~~~L~~l~l~~~~~ 214 (235)
|+++.+.+.+- +....+.+++.|+.|.++.+++.+ .+..+...+|..+++..|..
T Consensus 229 LnL~~~~idsw-------asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 229 LNLGANNIDSW-------ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred hhhcccccccH-------HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcc
Confidence 77777776522 456677888999999999988752 22223556677777755553
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.48 E-value=4e-08 Score=86.28 Aligned_cols=147 Identities=21% Similarity=0.266 Sum_probs=87.9
Q ss_pred ccCCCcEEecCCCCCC--CCCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccC
Q 042164 5 IRKGPIAISLPQRDIQ--ELPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINL 80 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~--~i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L 80 (235)
...+|++|+++|...- ..|... .+|.|++|.+ ++-.....--..++..+++|..||+++++++.+ .+++.+++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i-~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVI-SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEe-cCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 3457788888875431 222222 6888888888 332222211122346778888888888888777 457788888
Q ss_pred cEEeccCcCCCCc---cccCCCCCCcEEEecCCCCCCcc-------hhhccCCCCcEEcccCCcCCCCCchhhhcCCCCC
Q 042164 81 QTLCLDWCQLEDV---AAIGQLKKLEILSFRGSNIKQLP-------LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRL 150 (235)
Q Consensus 81 ~~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 150 (235)
+.|.+.+=.+... ..+..+++|+.||+|.......+ +....+|.|+.||.+++.+...+-...+..-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 8887777666532 66667888888888876544222 1223467777777776654444433333333444
Q ss_pred cEE
Q 042164 151 EEL 153 (235)
Q Consensus 151 ~~L 153 (235)
+.+
T Consensus 278 ~~i 280 (699)
T KOG3665|consen 278 QQI 280 (699)
T ss_pred hhh
Confidence 443
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.48 E-value=2.6e-07 Score=51.32 Aligned_cols=40 Identities=33% Similarity=0.516 Sum_probs=26.3
Q ss_pred CCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCccc
Q 042164 56 ELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAA 95 (235)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 95 (235)
+|++|++++|.++.+|+.+..|++|++|++++|.+++++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 5677777777777776667777777777777777665533
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.48 E-value=3.1e-07 Score=67.25 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=81.2
Q ss_pred cEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhc-CCccCcEEeccC
Q 042164 10 IAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLG-RLINLQTLCLDW 87 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~ 87 (235)
+++++.+..+..+.... -..+...+++ .++.+..++. |..++.|.+|.+++|.|+.+.+.+. -+++|..|.+.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDL--tdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDL--TDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhhccccccccceecc--cccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 45667766666554432 4556667777 5555554444 5677888888888888887655443 457788888888
Q ss_pred cCCCCc---cccCCCCCCcEEEecCCCCCCcc----hhhccCCCCcEEcccCC
Q 042164 88 CQLEDV---AAIGQLKKLEILSFRGSNIKQLP----LEIGQLTRLQLLDLSNC 133 (235)
Q Consensus 88 ~~l~~~---~~~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~L~~L~l~~~ 133 (235)
|.+.++ ..+..+++|++|.+-+|.++.-. -.+..+|+|+.||+..-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 887755 66667778888888888776322 13567778888887764
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=1.7e-08 Score=69.38 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=56.3
Q ss_pred hCCCCCcEEeecCccCCCCChhhc-CCccCcEEeccCcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEc
Q 042164 52 EGTEELKVLDFTGIHFSSLPSSLG-RLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLD 129 (235)
Q Consensus 52 ~~~~~L~~L~l~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 129 (235)
.....|...+|++|.+..+|+.|. .++.++.+++.+|.++++ ..+..++.|+.++++.|.+...|+.+..+.++.+|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 445555666666666666665553 344666666666666666 446666666666676666666666655566666776
Q ss_pred ccCCcCCCCCchh
Q 042164 130 LSNCWSLEVIPPN 142 (235)
Q Consensus 130 l~~~~~~~~~~~~ 142 (235)
..+|. ...++-+
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 66665 5555544
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.39 E-value=7.4e-07 Score=65.30 Aligned_cols=104 Identities=23% Similarity=0.262 Sum_probs=52.4
Q ss_pred cCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhc-cCCCCcEEcccCCcC--CCCCchhhhcCCCCCcEEEe
Q 042164 79 NLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIG-QLTRLQLLDLSNCWS--LEVIPPNVISKLSRLEELYM 155 (235)
Q Consensus 79 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~~L~l 155 (235)
+...+++.+|.+..+..+..+++|.+|.++.|+|+.+.+.+. .+++|..|.+.+|.+ ++++.+ +..||+|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeee
Confidence 445555555555555555555556666666665555444332 234555555555542 233333 455556666665
Q ss_pred ccccccccccCCCCCccchhcccCCCccceeeec
Q 042164 156 DISFSQWDKVEGGSNASLAELKGLSKLTTLNIQV 189 (235)
Q Consensus 156 ~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 189 (235)
-+|.++.. ...-...+..+|+|+.||+++
T Consensus 121 l~Npv~~k-----~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHK-----KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcc-----cCceeEEEEecCcceEeehhh
Confidence 55555421 112233444555666655543
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.34 E-value=2.7e-07 Score=70.64 Aligned_cols=201 Identities=14% Similarity=0.091 Sum_probs=124.7
Q ss_pred ccCCCcEEecCCCCCC-----CCCCcC-CCCCccEEEeccCCCCCccc----chh------hhhCCCCCcEEeecCccCC
Q 042164 5 IRKGPIAISLPQRDIQ-----ELPERL-QCPNLQLFLLFREGNGPMQI----SDH------FFEGTEELKVLDFTGIHFS 68 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~-----~i~~~~-~l~~L~~L~l~~~~~~~~~~----~~~------~~~~~~~L~~L~l~~~~~~ 68 (235)
.+..++.+++++|.|. .+...+ .-.+|+..++ ...+++.. +.. .+-+|+.|+.+++++|.|+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnf--sd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNF--SDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeeh--hhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3678899999999986 233333 6677777777 44444332 221 2357889999999999887
Q ss_pred C-CChh----hcCCccCcEEeccCcCCCCc---------------cccCCCCCCcEEEecCCCCCCcchh-----hccCC
Q 042164 69 S-LPSS----LGRLINLQTLCLDWCQLEDV---------------AAIGQLKKLEILSFRGSNIKQLPLE-----IGQLT 123 (235)
Q Consensus 69 ~-~~~~----l~~l~~L~~L~l~~~~l~~~---------------~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~l~ 123 (235)
. .|+. +..-..|.+|.+++|.+..+ .....-+.|++.....|++...+.. +..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 3 5543 45567899999999987643 1233457788888888887754432 33335
Q ss_pred CCcEEcccCCcCCCC----CchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC-----C
Q 042164 124 RLQLLDLSNCWSLEV----IPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-----I 194 (235)
Q Consensus 124 ~L~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~ 194 (235)
.|+.+-+..|.+.-. +...-+..+.+|+.|+++.|-++-. ........+..++.|++|.+..|-++ .
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~----gS~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE----GSRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh----hHHHHHHHhcccchhhhccccchhhccccHHH
Confidence 677777777763211 1111145667888888888877622 11223345556677788877777654 1
Q ss_pred CCccc---cccccceeEEEe
Q 042164 195 LPQEW---VFVELQSYRICI 211 (235)
Q Consensus 195 ~p~~~---~~~~L~~l~l~~ 211 (235)
+-..+ .+++|..|...+
T Consensus 262 v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHHhhhhcCCCccccccch
Confidence 11111 556666666543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.26 E-value=6.5e-07 Score=78.81 Aligned_cols=152 Identities=23% Similarity=0.221 Sum_probs=103.0
Q ss_pred CCCCcEEeecCccC-CCC-Chhh-cCCccCcEEeccCcCCC--Cc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcE
Q 042164 54 TEELKVLDFTGIHF-SSL-PSSL-GRLINLQTLCLDWCQLE--DV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQL 127 (235)
Q Consensus 54 ~~~L~~L~l~~~~~-~~~-~~~l-~~l~~L~~L~l~~~~l~--~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 127 (235)
-.+|+.|++++... ..- |..+ .-+|+|+.|.+.+-.+. ++ ....++++|..||+++++++.+ ..++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 47789999988543 221 2223 45899999999887755 44 6667889999999999999877 56788999999
Q ss_pred EcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC-CCCccc--ccccc
Q 042164 128 LDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEW--VFVEL 204 (235)
Q Consensus 128 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~--~~~~L 204 (235)
|.+.+-.+.....-..+-++++|+.||+|........ .........-..+|+||-||.|++.+. .+-..+ ..++|
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 9888766433222222678899999999987665220 111122344456899999999988775 333333 55555
Q ss_pred ceeE
Q 042164 205 QSYR 208 (235)
Q Consensus 205 ~~l~ 208 (235)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 5554
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=3.1e-06 Score=46.97 Aligned_cols=33 Identities=39% Similarity=0.538 Sum_probs=13.1
Q ss_pred CcEEEecCCCCCCcchhhccCCCCcEEcccCCc
Q 042164 102 LEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCW 134 (235)
Q Consensus 102 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 134 (235)
|++|++++|+++.+|+.++++++|+.|++++|+
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 344444444444443334444444444444443
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=3.3e-06 Score=64.87 Aligned_cols=136 Identities=20% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCCCCcEEeecCccCCC-----CChhhcCCccCcEEeccCcCCC----Cc--------cccCCCCCCcEEEecCCCCC-C
Q 042164 53 GTEELKVLDFTGIHFSS-----LPSSLGRLINLQTLCLDWCQLE----DV--------AAIGQLKKLEILSFRGSNIK-Q 114 (235)
Q Consensus 53 ~~~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~l~----~~--------~~~~~l~~L~~L~l~~~~~~-~ 114 (235)
.+..+..+++++|.|+. +...+..-.+|+..+++.-... ++ +++.+|++|+.++++.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 45666667777776652 2223444456666666553322 11 55666677777777777665 3
Q ss_pred cchh----hccCCCCcEEcccCCcCCCCCchhh-------------hcCCCCCcEEEeccccccccccCCCCCccchhcc
Q 042164 115 LPLE----IGQLTRLQLLDLSNCWSLEVIPPNV-------------ISKLSRLEELYMDISFSQWDKVEGGSNASLAELK 177 (235)
Q Consensus 115 ~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~-------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 177 (235)
+|+. +.+-..|.||.+++|+ .|.+...- .+.-|.|+.+....|++... ........+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng----s~~~~a~~l~ 182 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG----SKELSAALLE 182 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC----cHHHHHHHHH
Confidence 4432 3445567777777665 44432211 23455667776666665422 1112223334
Q ss_pred cCCCccceeeecCCCC
Q 042164 178 GLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 178 ~~~~L~~L~l~~n~~~ 193 (235)
...+|..+.+..|.++
T Consensus 183 sh~~lk~vki~qNgIr 198 (388)
T COG5238 183 SHENLKEVKIQQNGIR 198 (388)
T ss_pred hhcCceeEEeeecCcC
Confidence 4445555555555554
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.8e-07 Score=71.77 Aligned_cols=105 Identities=27% Similarity=0.362 Sum_probs=56.6
Q ss_pred CccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCch-hhhcCCCCCcEEEe
Q 042164 77 LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPP-NVISKLSRLEELYM 155 (235)
Q Consensus 77 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l 155 (235)
+.+.+.|++-+|.+.++.....++.|+.|.++-|.|+++. .+..|.+|++|.+..|. +..+.+ ..+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 4445555666666666555556666666666666666552 24556666666666665 333332 23556666666666
Q ss_pred ccccccccccCCCCCccchhcccCCCcccee
Q 042164 156 DISFSQWDKVEGGSNASLAELKGLSKLTTLN 186 (235)
Q Consensus 156 ~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 186 (235)
..|.=-+. +....-...+..+|+|++||
T Consensus 96 ~ENPCc~~---ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGE---AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccc---cchhHHHHHHHHcccchhcc
Confidence 66543311 11122334455566666665
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=3e-05 Score=63.75 Aligned_cols=132 Identities=18% Similarity=0.271 Sum_probs=80.2
Q ss_pred CCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCc-cCCCCChhhcCCccCcEEec
Q 042164 7 KGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGI-HFSSLPSSLGRLINLQTLCL 85 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~l~~L~~L~l 85 (235)
.++++|++++|.++.+|. -..+|++|.+ ..+.....+|..+ ..+|+.|++++| .+..+|. +|+.|.+
T Consensus 52 ~~l~~L~Is~c~L~sLP~--LP~sLtsL~L-snc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--LPNELTEITI-ENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred cCCCEEEeCCCCCcccCC--CCCCCcEEEc-cCCCCcccCCchh---hhhhhheEccCccccccccc------ccceEEe
Confidence 678899999999998883 2457999999 6667666666532 468899999988 5666664 3566666
Q ss_pred cCcCCCCccccCCCCCCcEEEecCCCCC---CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccc
Q 042164 86 DWCQLEDVAAIGQLKKLEILSFRGSNIK---QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDIS 158 (235)
Q Consensus 86 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 158 (235)
..+....+..+ .++|+.|.+..+... .++. .-.++|++|++++|. ....|.. + ..+|+.|.++.+
T Consensus 120 ~~n~~~~L~~L--PssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~-~i~LP~~-L--P~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNV--PNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCS-NIILPEK-L--PESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccC--cchHhheecccccccccccccc--ccCCcccEEEecCCC-cccCccc-c--cccCcEEEeccc
Confidence 55544333211 124666666433211 1121 012467788877776 3333332 1 146777777654
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.85 E-value=7.6e-05 Score=51.71 Aligned_cols=115 Identities=16% Similarity=0.337 Sum_probs=42.4
Q ss_pred CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCc
Q 042164 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLE 103 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~ 103 (235)
++.+|+.+.+ .. ....++...|..+..++.+.+..+ +..++ ..|..+++++.+.+.. .+..+ ..+..+..++
T Consensus 10 ~~~~l~~i~~--~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITF--PN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEE--TS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEE--CC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 4556666665 32 233455555566656666666553 44433 2345555566666644 33322 4444555566
Q ss_pred EEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCC
Q 042164 104 ILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRL 150 (235)
Q Consensus 104 ~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 150 (235)
.+.+..+ +..++.. +.++ .++.+.+..+ ...++...+.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 6655443 3333322 4444 5555555432 333444444444443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=1.4e-06 Score=67.04 Aligned_cols=99 Identities=23% Similarity=0.336 Sum_probs=75.6
Q ss_pred CCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhccc
Q 042164 99 LKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKG 178 (235)
Q Consensus 99 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 178 (235)
+.+.+.|+.+++.++.+. ....++.|+.|.++-|+ +..+.+ +..|++|++|.|..|.|... .-++-+.+
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sl-------dEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESL-------DELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccH-------HHHHHHhc
Confidence 456778899999888653 34578999999999998 666655 78899999999999988744 45677888
Q ss_pred CCCccceeeecCCCC-CCCccc------cccccceeE
Q 042164 179 LSKLTTLNIQVPDAQ-ILPQEW------VFVELQSYR 208 (235)
Q Consensus 179 ~~~L~~L~l~~n~~~-~~p~~~------~~~~L~~l~ 208 (235)
+|+|+.|.|..|+-. .-+... .+|+|+.|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999999988853 333222 677888776
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.71 E-value=0.00015 Score=50.18 Aligned_cols=106 Identities=19% Similarity=0.329 Sum_probs=58.6
Q ss_pred cchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcch-hhcc
Q 042164 46 ISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPL-EIGQ 121 (235)
Q Consensus 46 ~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 121 (235)
+++..|..+..|+.+.+.. .+..++ ..|..+++|+.+.+..+ +..+ ..+..+.+++.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566678888888888875 455554 34677778888888774 6655 6677777788888865 4444433 3666
Q ss_pred CCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecc
Q 042164 122 LTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDI 157 (235)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 157 (235)
+++++.+.+..+ ...++...+.++ +++.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 778888877654 445555556666 777777654
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00026 Score=58.38 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=50.2
Q ss_pred hCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcC-CCCcc-ccCCCCCCcEEEecCC-CCCCcchhhccCCCCcEE
Q 042164 52 EGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQ-LEDVA-AIGQLKKLEILSFRGS-NIKQLPLEIGQLTRLQLL 128 (235)
Q Consensus 52 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~-~~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L 128 (235)
..+.+++.|++++|.++.+|. --.+|+.|.+.+|. +..++ .+ ..+|+.|+++.| .+..+|. +|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 357889999999999888872 12369999998865 44442 23 358999999988 6656653 45566
Q ss_pred cccCCc
Q 042164 129 DLSNCW 134 (235)
Q Consensus 129 ~l~~~~ 134 (235)
++..+.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.55 E-value=3.5e-05 Score=58.83 Aligned_cols=102 Identities=25% Similarity=0.329 Sum_probs=53.2
Q ss_pred hCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCC---Cc-cccCCCCCCcEEEecCCCCCCcc--hhhccCCCC
Q 042164 52 EGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLE---DV-AAIGQLKKLEILSFRGSNIKQLP--LEIGQLTRL 125 (235)
Q Consensus 52 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~---~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L 125 (235)
..+..|+.|.+.+..++.+. .+..+++|+.|.++.|... ++ .....+++|+++++++|.+..+. ..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34455555555555555432 2445667777777776322 33 22334467777777777665221 224455666
Q ss_pred cEEcccCCcCCCCC--chhhhcCCCCCcEEE
Q 042164 126 QLLDLSNCWSLEVI--PPNVISKLSRLEELY 154 (235)
Q Consensus 126 ~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~ 154 (235)
..|++..|.....- -+.++.-+++|..++
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 66666666532211 123344555555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=4.1e-05 Score=58.41 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCcEEecCCCCCC--CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCc--cCC-CCChhhcCCccCc
Q 042164 8 GPIAISLPQRDIQ--ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGI--HFS-SLPSSLGRLINLQ 81 (235)
Q Consensus 8 ~l~~L~l~~~~l~--~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~l~~l~~L~ 81 (235)
+++.+.+.++.-. .+.... ....|+.+.+ .+....++.. |-.+++|+.|.++.| ++. .++.....+|+|+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~--~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~ 94 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSV--INVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLK 94 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhh--hccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCcee
Confidence 3445555544332 244444 5667777776 4444443433 467889999999999 444 3555556779999
Q ss_pred EEeccCcCCCCc---cccCCCCCCcEEEecCCCCCCc--c--hhhccCCCCcEEcccCCc
Q 042164 82 TLCLDWCQLEDV---AAIGQLKKLEILSFRGSNIKQL--P--LEIGQLTRLQLLDLSNCW 134 (235)
Q Consensus 82 ~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~l~~L~~L~l~~~~ 134 (235)
+++++.|+++.+ ..+..+.+|..|++..|..+.+ + ..|.-+++|.+|+-.+..
T Consensus 95 ~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 95 VLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred EEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 999999998866 5566677888999999977633 2 236778999999877654
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.97 E-value=5.1e-05 Score=61.67 Aligned_cols=199 Identities=18% Similarity=0.127 Sum_probs=106.2
Q ss_pred CCcEEecCCCCCC---CCCCcC-CCCCccEEEeccCCCCCcccc-hhhhhCCCCCcEEeecCc-cCCCC--ChhhcCCcc
Q 042164 8 GPIAISLPQRDIQ---ELPERL-QCPNLQLFLLFREGNGPMQIS-DHFFEGTEELKVLDFTGI-HFSSL--PSSLGRLIN 79 (235)
Q Consensus 8 ~l~~L~l~~~~l~---~i~~~~-~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~-~~~~~--~~~l~~l~~ 79 (235)
.++.|++.|+.=. .+.... .+++++.|.+ ..+..+.+.. .++-..++.|++|++..| .++.. -.....+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l-~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLAL-YGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhh-hcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4677888887633 233333 7888888888 5665544322 222346788888888874 45532 223457889
Q ss_pred CcEEeccCcC-CC--Cc-cccCCCCCCcEEEecCC---------------------------CCCCcc--hhhccCCCCc
Q 042164 80 LQTLCLDWCQ-LE--DV-AAIGQLKKLEILSFRGS---------------------------NIKQLP--LEIGQLTRLQ 126 (235)
Q Consensus 80 L~~L~l~~~~-l~--~~-~~~~~l~~L~~L~l~~~---------------------------~~~~~~--~~~~~l~~L~ 126 (235)
|.++++++|. ++ ++ .....++.++.+...++ .++... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999998886 43 23 22223333333322222 122111 1112355666
Q ss_pred EEcccCCcCCCCCchh-hhcCCCCCcEEEecccc-ccccccCCCCCccch-hcccCCCccceeeecCCCCC---CCccc-
Q 042164 127 LLDLSNCWSLEVIPPN-VISKLSRLEELYMDISF-SQWDKVEGGSNASLA-ELKGLSKLTTLNIQVPDAQI---LPQEW- 199 (235)
Q Consensus 127 ~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~---~p~~~- 199 (235)
.++.+.+...+..+-+ ...++.+|+.+-+..+. ++. .... .-.+++.|+.+++.++.... +-.-.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd--------~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD--------RGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh--------hhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 6666665433333322 23456677777776664 221 1112 22356777777777765431 11111
Q ss_pred cccccceeEEEecccc
Q 042164 200 VFVELQSYRICIGNKW 215 (235)
Q Consensus 200 ~~~~L~~l~l~~~~~~ 215 (235)
.++.|+.+.++.+...
T Consensus 370 ~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELI 385 (483)
T ss_pred CCchhccCChhhhhhh
Confidence 7777777777644433
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.52 E-value=0.0011 Score=30.70 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=14.8
Q ss_pred CCcEEeecCccCCCCChhhcC
Q 042164 56 ELKVLDFTGIHFSSLPSSLGR 76 (235)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~l~~ 76 (235)
+|++|++++|.++.+|+.|+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467788888887777765543
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.39 E-value=0.0018 Score=27.86 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=9.1
Q ss_pred CCccceeeecCCCCCCC
Q 042164 180 SKLTTLNIQVPDAQILP 196 (235)
Q Consensus 180 ~~L~~L~l~~n~~~~~p 196 (235)
++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 45777777777776655
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.70 E-value=0.0046 Score=28.50 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=7.2
Q ss_pred CcEEEecCCCCCCcch
Q 042164 102 LEILSFRGSNIKQLPL 117 (235)
Q Consensus 102 L~~L~l~~~~~~~~~~ 117 (235)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444443
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.0054 Score=45.46 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=50.8
Q ss_pred CCcEEEecCCCCCCcc-hhhccCCCCcEEcccCCcCCCCCchhhhcC-CCCCcEEEeccc-cccccccCCCCCccchhcc
Q 042164 101 KLEILSFRGSNIKQLP-LEIGQLTRLQLLDLSNCWSLEVIPPNVISK-LSRLEELYMDIS-FSQWDKVEGGSNASLAELK 177 (235)
Q Consensus 101 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~ 177 (235)
.++.++.+++.|.... ..+.+++.++.|.+.+|+..+..--+-+++ .++|+.|++++| +|++ ..++.+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~--------~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD--------GGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech--------hHHHHHH
Confidence 3566777776666332 346667777777777776555443332333 367788888766 4552 3667777
Q ss_pred cCCCccceeeecC
Q 042164 178 GLSKLTTLNIQVP 190 (235)
Q Consensus 178 ~~~~L~~L~l~~n 190 (235)
.+++|+.|.+.+-
T Consensus 174 ~lknLr~L~l~~l 186 (221)
T KOG3864|consen 174 KLKNLRRLHLYDL 186 (221)
T ss_pred HhhhhHHHHhcCc
Confidence 7777777777653
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.91 E-value=0.014 Score=49.74 Aligned_cols=106 Identities=22% Similarity=0.283 Sum_probs=45.1
Q ss_pred CCCCcEEeecCcc-CCC--CChhhcCCccCcEEeccCc-C-CC--C--c-cccCCCCCCcEEEecCCC-CCCc--chhhc
Q 042164 54 TEELKVLDFTGIH-FSS--LPSSLGRLINLQTLCLDWC-Q-LE--D--V-AAIGQLKKLEILSFRGSN-IKQL--PLEIG 120 (235)
Q Consensus 54 ~~~L~~L~l~~~~-~~~--~~~~l~~l~~L~~L~l~~~-~-l~--~--~-~~~~~l~~L~~L~l~~~~-~~~~--~~~~~ 120 (235)
++.|+.|.+..+. +.. +-.....++.|+.++++++ . .. . . .....+++++.++++.+. ++.. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555442 222 2233445555555555542 1 11 1 0 222234555555555554 3311 11122
Q ss_pred cCCCCcEEcccCCc-CCCCCchhhhcCCCCCcEEEecccc
Q 042164 121 QLTRLQLLDLSNCW-SLEVIPPNVISKLSRLEELYMDISF 159 (235)
Q Consensus 121 ~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~n~ 159 (235)
.+++|+.|.+..|. +...--..+...++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 35555555555443 1222122223445556666655543
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.50 E-value=0.021 Score=47.02 Aligned_cols=205 Identities=16% Similarity=0.109 Sum_probs=110.8
Q ss_pred cCCCcEEecCCCC-CC--CCCCcC-CCCCccEEEeccCCCCCcc-cchhhhhCCCCCcEEeecCcc-CCCC--ChhhcCC
Q 042164 6 RKGPIAISLPQRD-IQ--ELPERL-QCPNLQLFLLFREGNGPMQ-ISDHFFEGTEELKVLDFTGIH-FSSL--PSSLGRL 77 (235)
Q Consensus 6 ~~~l~~L~l~~~~-l~--~i~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~--~~~l~~l 77 (235)
.+++.+++++.|. ++ .+.... +++.++.+.+ +.|..... .-...-..+..+-.+++..|. ++.. ...-..+
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~-kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSL-KGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhh-cccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 4577888888885 33 343334 6777777777 44433221 000111234445555655552 3321 1222456
Q ss_pred ccCcEEeccCcC-CCC-c--cccCCCCCCcEEEecCCC-CC--CcchhhccCCCCcEEcccCCcCCCCC-chhhhcCCCC
Q 042164 78 INLQTLCLDWCQ-LED-V--AAIGQLKKLEILSFRGSN-IK--QLPLEIGQLTRLQLLDLSNCWSLEVI-PPNVISKLSR 149 (235)
Q Consensus 78 ~~L~~L~l~~~~-l~~-~--~~~~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~ 149 (235)
..|+++..+++. +.. + .-..+.++|+++.+..++ ++ .+...-.+++.|+.+++.++..+... -...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 778888877765 332 2 333466788888888874 44 22222346778888888887532221 1122356778
Q ss_pred CcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC--CCCccc-cccccceeEEEeccc
Q 042164 150 LEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ--ILPQEW-VFVELQSYRICIGNK 214 (235)
Q Consensus 150 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~p~~~-~~~~L~~l~l~~~~~ 214 (235)
|+++.++++..-.. .| ..........+..+..+.++.++.. ..-+.. .+++|+++++-.+..
T Consensus 374 lr~lslshce~itD--~g-i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITD--EG-IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhh--hh-hhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 88888887753211 00 0111122234567778888877653 222222 777888877754443
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.42 E-value=0.023 Score=48.36 Aligned_cols=129 Identities=20% Similarity=0.190 Sum_probs=83.4
Q ss_pred cCCccCcEEeccCcC-CCC--c-cccCCCCCCcEEEecCC--CCCCc----chhhccCCCCcEEcccCCcCCCCCchhhh
Q 042164 75 GRLINLQTLCLDWCQ-LED--V-AAIGQLKKLEILSFRGS--NIKQL----PLEIGQLTRLQLLDLSNCWSLEVIPPNVI 144 (235)
Q Consensus 75 ~~l~~L~~L~l~~~~-l~~--~-~~~~~l~~L~~L~l~~~--~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 144 (235)
..++.|+.+.+..+. +.. + .....++.|+.++++.+ .+... ......+++|+.++++.+..+++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888888775 443 4 56667888999999873 22211 22345678899999998874444433323
Q ss_pred c-CCCCCcEEEecccc-ccccccCCCCCccchhcccCCCccceeeecCCCC---CCCccc-cccccceeEEE
Q 042164 145 S-KLSRLEELYMDISF-SQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ---ILPQEW-VFVELQSYRIC 210 (235)
Q Consensus 145 ~-~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~p~~~-~~~~L~~l~l~ 210 (235)
+ .|++|++|.+..+. ++.. .+......+++|++|+++++..- .+.... .+++++.+.+.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~-------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDE-------GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HhhCCCcceEccCCCCccchh-------HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 3 48899999977776 4522 44556667888999999977642 122222 66666666653
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.20 E-value=0.028 Score=26.88 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.4
Q ss_pred CCCccceeeecCCCCCCCcc
Q 042164 179 LSKLTTLNIQVPDAQILPQE 198 (235)
Q Consensus 179 ~~~L~~L~l~~n~~~~~p~~ 198 (235)
+++|+.|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 36788899999998888875
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.20 E-value=0.028 Score=26.88 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.4
Q ss_pred CCCccceeeecCCCCCCCcc
Q 042164 179 LSKLTTLNIQVPDAQILPQE 198 (235)
Q Consensus 179 ~~~L~~L~l~~n~~~~~p~~ 198 (235)
+++|+.|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 36788899999998888875
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.09 E-value=0.00039 Score=59.00 Aligned_cols=179 Identities=20% Similarity=0.178 Sum_probs=94.6
Q ss_pred CcEEecCCCCCCCC-----CCcC-CCCCccEEEeccCCCCCcccchhh---hhCC-CCCcEEeecCccCCC-----CChh
Q 042164 9 PIAISLPQRDIQEL-----PERL-QCPNLQLFLLFREGNGPMQISDHF---FEGT-EELKVLDFTGIHFSS-----LPSS 73 (235)
Q Consensus 9 l~~L~l~~~~l~~i-----~~~~-~l~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~-----~~~~ 73 (235)
+..+.+.+|.+..- .... ...+|..+++ .+++....-...+ +... +.+++|++..|.++. +.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l-~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDL-SGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhc-ccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 45666666666521 1112 5666666777 4444332111111 1111 445666666666552 2344
Q ss_pred hcCCccCcEEeccCcCCCCc------cccC----CCCCCcEEEecCCCCC-----CcchhhccCCC-CcEEcccCCcCCC
Q 042164 74 LGRLINLQTLCLDWCQLEDV------AAIG----QLKKLEILSFRGSNIK-----QLPLEIGQLTR-LQLLDLSNCWSLE 137 (235)
Q Consensus 74 l~~l~~L~~L~l~~~~l~~~------~~~~----~l~~L~~L~l~~~~~~-----~~~~~~~~l~~-L~~L~l~~~~~~~ 137 (235)
+....+++.+++..|.+... ..+. ...++++|.+.++.++ .+...+...+. ++.+++..|+ ++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~ 246 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LG 246 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cc
Confidence 55566777777777765311 2222 3556777777777665 12223444444 5667777776 33
Q ss_pred CCc-h---hhhcCC-CCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 138 VIP-P---NVISKL-SRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 138 ~~~-~---~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
+.. . ..+..+ +++++++++.|.++.. ........+..++.++++.++.|++.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~----~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEK----GVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCcccc----chHHHHHHHhhhHHHHHhhcccCccc
Confidence 321 1 113444 5567777777777633 22234455556667777777777764
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.99 E-value=0.0018 Score=49.14 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=43.5
Q ss_pred hCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcc
Q 042164 52 EGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDL 130 (235)
Q Consensus 52 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 130 (235)
..+...+.||++.|..-.+...++.+..+..++++.|.+... ..++....+..++...|..+..|..++..+.+++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 344555555555555544444455555555555555555444 4444444455555555555555555555555555555
Q ss_pred cCCc
Q 042164 131 SNCW 134 (235)
Q Consensus 131 ~~~~ 134 (235)
-.+.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5544
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=0.041 Score=40.92 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=31.4
Q ss_pred CcEEeecCccCCCCC-hhhcCCccCcEEeccCcCC-CC--ccccC-CCCCCcEEEecCC-CCCCcc-hhhccCCCCcEEc
Q 042164 57 LKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWCQL-ED--VAAIG-QLKKLEILSFRGS-NIKQLP-LEIGQLTRLQLLD 129 (235)
Q Consensus 57 L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~l-~~--~~~~~-~l~~L~~L~l~~~-~~~~~~-~~~~~l~~L~~L~ 129 (235)
++.+|-+++.|.... +.+..++.++.+.+.+|.. .. +..++ -.++|+.|++++| +|++.. ..+..+++|+.|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444443221 3344455555555555541 11 12221 2345555555544 344221 2244444555444
Q ss_pred ccC
Q 042164 130 LSN 132 (235)
Q Consensus 130 l~~ 132 (235)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.52 E-value=0.0046 Score=52.64 Aligned_cols=154 Identities=23% Similarity=0.204 Sum_probs=100.2
Q ss_pred cCCCcEEecCCCCCCC-----CCCcC-CC-CCccEEEeccCCCCCcc----cchhhhhCCCCCcEEeecCccCCC-----
Q 042164 6 RKGPIAISLPQRDIQE-----LPERL-QC-PNLQLFLLFREGNGPMQ----ISDHFFEGTEELKVLDFTGIHFSS----- 69 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~-----i~~~~-~l-~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----- 69 (235)
...+..|++++|.+.. +.+.. .. +.++.|.+ ..+..... +.+.+ .....+++++++.|.+..
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l-~~c~l~~~g~~~l~~~L-~~~~~l~~l~l~~n~l~~~g~~~ 191 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLEL-VSCSLTSEGAAPLAAVL-EKNEHLTELDLSLNGLIELGLLV 191 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHh-hcccccccchHHHHHHH-hcccchhHHHHHhcccchhhhHH
Confidence 4577889999998861 22222 33 56777777 45444332 22332 447888999999888741
Q ss_pred CChhhc----CCccCcEEeccCcCCCCc------cccCCCCC-CcEEEecCCCCC-----CcchhhccC-CCCcEEcccC
Q 042164 70 LPSSLG----RLINLQTLCLDWCQLEDV------AAIGQLKK-LEILSFRGSNIK-----QLPLEIGQL-TRLQLLDLSN 132 (235)
Q Consensus 70 ~~~~l~----~l~~L~~L~l~~~~l~~~------~~~~~l~~-L~~L~l~~~~~~-----~~~~~~~~l-~~L~~L~l~~ 132 (235)
++..+. ...+++++.+.+|.+... ..+...++ +..+++..|.+. .+.+.+..+ +.+++++++.
T Consensus 192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ 271 (478)
T KOG4308|consen 192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR 271 (478)
T ss_pred HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence 223333 477899999999987732 55555665 667888888776 233445566 6788999999
Q ss_pred CcCCCCCc---hhhhcCCCCCcEEEecccccc
Q 042164 133 CWSLEVIP---PNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 133 ~~~~~~~~---~~~l~~~~~L~~L~l~~n~~~ 161 (235)
|.+...-. .+.+..++.++++.++.|.+.
T Consensus 272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 87433221 233667778888888888765
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.51 E-value=0.26 Score=23.60 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=14.8
Q ss_pred CCccceeeecCCCCCCCc
Q 042164 180 SKLTTLNIQVPDAQILPQ 197 (235)
Q Consensus 180 ~~L~~L~l~~n~~~~~p~ 197 (235)
++|+.|++++|.++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888899998888886
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.99 E-value=0.017 Score=44.05 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=64.9
Q ss_pred CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc-cccCCCCCCcEE
Q 042164 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEIL 105 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L 105 (235)
...+.+.|++ ..+........ |+.+..+..|+++.|.+..+|..+.+...++.+....|..+.. .+++..++++++
T Consensus 40 ~~kr~tvld~--~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDL--SSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehh--hhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 6777888888 44444445544 4777888888888888888888888888888888888887766 778888888888
Q ss_pred EecCCCCC
Q 042164 106 SFRGSNIK 113 (235)
Q Consensus 106 ~l~~~~~~ 113 (235)
+.-.+.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888755
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.98 E-value=1.2 Score=21.39 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=12.8
Q ss_pred CCCcEEecCCCCCCCCC
Q 042164 7 KGPIAISLPQRDIQELP 23 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~ 23 (235)
.+|+.|++++|.|+.|.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 57788888888887554
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.41 E-value=1.5 Score=20.23 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=6.7
Q ss_pred CCCcEEEecccccc
Q 042164 148 SRLEELYMDISFSQ 161 (235)
Q Consensus 148 ~~L~~L~l~~n~~~ 161 (235)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555666655554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.83 E-value=1.2 Score=38.29 Aligned_cols=11 Identities=36% Similarity=0.307 Sum_probs=4.7
Q ss_pred CcEEEeccccc
Q 042164 150 LEELYMDISFS 160 (235)
Q Consensus 150 L~~L~l~~n~~ 160 (235)
|++|.+.+|.+
T Consensus 272 Leel~l~GNPl 282 (585)
T KOG3763|consen 272 LEELVLEGNPL 282 (585)
T ss_pred HHHeeecCCcc
Confidence 44444444433
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.61 E-value=1.9 Score=37.15 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=43.8
Q ss_pred cCCCCcEEcccCCcCCCCCc--hhhhcCCCCCcEEEeccc--cccccccCCCCCccchhcccCCCccceeeecCCCC-C-
Q 042164 121 QLTRLQLLDLSNCWSLEVIP--PNVISKLSRLEELYMDIS--FSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-I- 194 (235)
Q Consensus 121 ~l~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~- 194 (235)
+.+.+..+++++|+ +-.+. ..+-...|+|..|+|++| .+... ..+..++.+ .|++|.+.||++. .
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-------~el~K~k~l-~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-------SELDKLKGL-PLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcch-------hhhhhhcCC-CHHHeeecCCccccch
Confidence 45566777777776 22221 122345577888888887 33211 223344443 4788888888763 1
Q ss_pred -CCccc------cccccceeE
Q 042164 195 -LPQEW------VFVELQSYR 208 (235)
Q Consensus 195 -~p~~~------~~~~L~~l~ 208 (235)
.+.+. .||+|..|+
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 11111 677776665
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.58 E-value=2.5 Score=20.44 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=9.1
Q ss_pred CCCcEEeecCccCC
Q 042164 55 EELKVLDFTGIHFS 68 (235)
Q Consensus 55 ~~L~~L~l~~~~~~ 68 (235)
+.|++|+|++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35667777777665
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=70.44 E-value=3.9 Score=19.25 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=8.0
Q ss_pred CCCCcEEcccCCc
Q 042164 122 LTRLQLLDLSNCW 134 (235)
Q Consensus 122 l~~L~~L~l~~~~ 134 (235)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3556666666665
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.03 E-value=60 Score=34.40 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=24.4
Q ss_pred EecCCCCCCcchh-hccCCCCcEEcccCCcCC
Q 042164 106 SFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSL 136 (235)
Q Consensus 106 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 136 (235)
||++|+++.++.. |..+++|+.|+|++|+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4778888888765 777888899998888743
Done!