Query 042164
Match_columns 235
No_of_seqs 150 out of 2146
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 05:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 4.5E-27 1.5E-31 189.0 15.2 214 5-234 79-306 (328)
2 1ozn_A Reticulon 4 receptor; N 99.9 5.5E-25 1.9E-29 173.4 18.6 200 4-215 29-237 (285)
3 4fcg_A Uncharacterized protein 99.9 5.1E-25 1.7E-29 177.0 16.5 194 5-210 102-309 (328)
4 2o6q_A Variable lymphocyte rec 99.9 3.9E-24 1.3E-28 167.3 19.8 197 6-215 15-217 (270)
5 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-25 6E-30 178.6 12.3 209 7-220 50-285 (313)
6 1p9a_G Platelet glycoprotein I 99.9 2.6E-24 9E-29 170.0 18.5 198 4-215 7-207 (290)
7 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-24 8.6E-29 169.6 17.1 210 10-234 14-230 (285)
8 3zyj_A Leucine-rich repeat-con 99.9 1.6E-24 5.5E-29 180.7 16.4 205 5-215 62-291 (440)
9 3zyi_A Leucine-rich repeat-con 99.9 1.8E-24 6.1E-29 181.1 16.4 200 5-215 73-302 (452)
10 2z66_A Variable lymphocyte rec 99.9 6.5E-25 2.2E-29 174.7 12.6 199 5-215 26-260 (306)
11 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-24 3.7E-29 174.0 13.4 199 5-215 74-303 (313)
12 3rgz_A Protein brassinosteroid 99.9 3.3E-24 1.1E-28 190.2 17.6 151 7-160 394-550 (768)
13 2z62_A TOLL-like receptor 4, v 99.9 5.6E-24 1.9E-28 166.9 16.8 201 5-218 26-239 (276)
14 1h6u_A Internalin H; cell adhe 99.9 3.2E-23 1.1E-27 165.1 19.2 188 5-211 39-226 (308)
15 3rgz_A Protein brassinosteroid 99.9 1.5E-23 5.1E-28 185.9 18.8 133 6-140 417-555 (768)
16 3o6n_A APL1; leucine-rich repe 99.9 1.1E-23 3.8E-28 173.0 16.7 106 6-113 68-178 (390)
17 2z80_A TOLL-like receptor 2, v 99.9 4.3E-24 1.5E-28 173.3 13.4 211 6-219 51-317 (353)
18 1xku_A Decorin; proteoglycan, 99.9 2.1E-23 7.3E-28 167.7 17.0 192 6-210 51-271 (330)
19 4fmz_A Internalin; leucine ric 99.9 6.1E-23 2.1E-27 166.0 19.7 143 52-209 152-294 (347)
20 3zyj_A Leucine-rich repeat-con 99.9 1.4E-23 4.8E-28 175.1 16.2 176 7-193 112-292 (440)
21 3zyi_A Leucine-rich repeat-con 99.9 2.4E-23 8.3E-28 174.2 17.2 175 8-193 124-303 (452)
22 3o6n_A APL1; leucine-rich repe 99.9 1.2E-23 3.9E-28 172.9 14.9 129 5-135 43-177 (390)
23 2id5_A Lingo-1, leucine rich r 99.9 3.5E-23 1.2E-27 174.2 18.0 224 5-234 30-277 (477)
24 2z80_A TOLL-like receptor 2, v 99.9 3.7E-24 1.3E-28 173.6 11.4 191 9-210 33-230 (353)
25 3oja_B Anopheles plasmodium-re 99.9 2.5E-23 8.4E-28 179.8 16.7 107 6-114 74-185 (597)
26 2xwt_C Thyrotropin receptor; s 99.9 1.1E-23 3.8E-28 161.8 12.9 193 5-209 29-233 (239)
27 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 158.5 19.0 178 5-193 35-218 (270)
28 2id5_A Lingo-1, leucine rich r 99.9 2.5E-23 8.7E-28 175.1 15.8 128 5-134 54-187 (477)
29 2z66_A Variable lymphocyte rec 99.9 1.2E-23 4E-28 167.4 13.0 190 9-209 9-206 (306)
30 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-23 1.3E-27 166.3 15.7 191 6-209 53-271 (332)
31 3rfs_A Internalin B, repeat mo 99.9 5.4E-23 1.8E-27 161.1 15.7 187 5-209 39-229 (272)
32 1xku_A Decorin; proteoglycan, 99.9 2.4E-22 8.2E-27 161.5 19.5 214 6-234 75-324 (330)
33 3v47_A TOLL-like receptor 5B a 99.9 4.9E-23 1.7E-27 172.2 16.0 133 5-138 28-169 (455)
34 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-22 3.6E-27 163.7 17.2 214 5-234 76-325 (332)
35 3t6q_A CD180 antigen; protein- 99.9 1.5E-22 5.2E-27 175.0 18.8 225 4-234 30-330 (606)
36 3oja_B Anopheles plasmodium-re 99.9 5.7E-23 1.9E-27 177.5 14.9 215 5-234 49-329 (597)
37 3v47_A TOLL-like receptor 5B a 99.9 8.3E-23 2.9E-27 170.8 15.5 85 6-91 78-167 (455)
38 4eco_A Uncharacterized protein 99.9 4E-23 1.4E-27 179.6 12.3 223 6-234 304-571 (636)
39 3t6q_A CD180 antigen; protein- 99.9 2.2E-22 7.5E-27 174.0 16.9 221 6-231 277-526 (606)
40 4fmz_A Internalin; leucine ric 99.9 1E-21 3.4E-26 158.8 19.6 190 4-210 63-273 (347)
41 2z62_A TOLL-like receptor 4, v 99.9 1.9E-22 6.4E-27 158.2 14.8 210 10-234 10-229 (276)
42 3m19_A Variable lymphocyte rec 99.9 6.5E-22 2.2E-26 153.1 17.6 177 7-195 14-194 (251)
43 1wwl_A Monocyte differentiatio 99.9 5.3E-24 1.8E-28 170.0 5.6 190 6-209 94-303 (312)
44 3rfs_A Internalin B, repeat mo 99.9 8.9E-23 3E-27 159.8 12.3 194 8-216 20-218 (272)
45 4ecn_A Leucine-rich repeat pro 99.9 2.9E-22 1E-26 178.4 16.3 213 6-234 547-811 (876)
46 4eco_A Uncharacterized protein 99.9 8.6E-23 2.9E-27 177.5 12.6 194 6-215 329-578 (636)
47 3oja_A Leucine-rich immune mol 99.9 1E-22 3.6E-27 171.7 12.0 209 6-232 33-265 (487)
48 3o53_A Protein LRIM1, AGAP0063 99.9 7.2E-23 2.4E-27 163.8 10.3 210 6-233 33-266 (317)
49 1p9a_G Platelet glycoprotein I 99.9 8.9E-22 3E-26 155.5 16.4 176 4-193 28-208 (290)
50 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.6E-26 155.8 17.5 177 4-199 60-236 (308)
51 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-22 6.4E-27 174.4 13.1 197 7-209 307-528 (606)
52 1o6v_A Internalin A; bacterial 99.9 2.2E-21 7.5E-26 162.9 19.3 186 5-209 175-360 (466)
53 1ziw_A TOLL-like receptor 3; i 99.9 2E-21 7E-26 170.1 18.6 202 6-209 328-567 (680)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1E-22 3.4E-27 162.9 9.3 197 5-215 56-275 (317)
55 1h6t_A Internalin B; cell adhe 99.9 1.7E-21 5.9E-26 153.9 16.2 173 6-197 45-217 (291)
56 1o6v_A Internalin A; bacterial 99.9 2.7E-21 9.3E-26 162.3 17.5 195 6-210 67-273 (466)
57 1ziw_A TOLL-like receptor 3; i 99.9 2E-21 6.7E-26 170.2 16.5 198 7-215 381-621 (680)
58 1h6t_A Internalin B; cell adhe 99.9 5.5E-22 1.9E-26 156.8 11.7 184 10-212 27-210 (291)
59 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-21 9.9E-26 161.7 16.6 193 6-215 41-245 (457)
60 1wwl_A Monocyte differentiatio 99.9 7.3E-22 2.5E-26 157.6 12.1 212 8-234 64-301 (312)
61 3oja_A Leucine-rich immune mol 99.9 2.2E-22 7.4E-27 169.8 9.2 191 5-209 56-269 (487)
62 4ecn_A Leucine-rich repeat pro 99.9 9E-22 3.1E-26 175.3 13.3 201 5-210 446-705 (876)
63 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-21 7.8E-26 164.8 14.8 122 7-134 21-149 (520)
64 3vq2_A TLR4, TOLL-like recepto 99.9 2.5E-21 8.5E-26 167.4 15.2 191 9-211 13-213 (606)
65 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-21 1.1E-25 172.7 15.7 133 5-138 22-163 (844)
66 2z63_A TOLL-like receptor 4, v 99.9 3E-21 1E-25 165.6 14.9 156 5-163 26-192 (570)
67 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5.3E-26 149.9 11.5 196 18-231 22-231 (239)
68 2z81_A CD282 antigen, TOLL-lik 99.9 3.6E-21 1.2E-25 164.5 14.7 195 5-210 24-231 (549)
69 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.3E-21 1.5E-25 164.7 14.8 57 177-234 350-408 (562)
70 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-21 7.4E-26 165.9 12.8 194 10-215 8-208 (549)
71 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-20 4.3E-25 160.2 16.3 122 78-209 324-451 (520)
72 3bz5_A Internalin-J, INLJ; leu 99.9 4.5E-20 1.6E-24 154.4 19.4 179 5-209 62-261 (457)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-20 8.7E-25 159.8 18.1 111 98-209 351-480 (562)
74 2z63_A TOLL-like receptor 4, v 99.9 6.2E-21 2.1E-25 163.6 13.8 198 7-216 325-531 (570)
75 4glp_A Monocyte differentiatio 99.9 7.1E-21 2.4E-25 151.7 13.0 195 7-215 91-306 (310)
76 1m9s_A Internalin B; cell inva 99.8 2.2E-20 7.6E-25 160.9 16.6 174 5-197 41-214 (605)
77 3m19_A Variable lymphocyte rec 99.8 5.7E-20 1.9E-24 142.2 16.9 172 29-215 14-191 (251)
78 2o6s_A Variable lymphocyte rec 99.8 3.8E-20 1.3E-24 139.1 14.7 172 9-199 9-185 (208)
79 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-20 7.3E-25 167.3 15.2 106 6-113 47-161 (844)
80 1m9s_A Internalin B; cell inva 99.8 4.3E-21 1.5E-25 165.4 10.2 188 8-215 22-209 (605)
81 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.9E-24 155.2 17.8 190 8-230 60-255 (571)
82 4glp_A Monocyte differentiatio 99.8 4.4E-21 1.5E-25 152.9 8.1 214 8-234 65-299 (310)
83 1xeu_A Internalin C; cellular 99.8 9.2E-21 3.1E-25 147.6 9.3 172 6-197 18-189 (263)
84 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-19 4E-24 157.2 16.1 188 10-209 34-231 (635)
85 3g06_A SSPH2 (leucine-rich rep 99.8 4E-19 1.4E-23 153.4 18.5 57 7-71 61-117 (622)
86 4ay9_X Follicle-stimulating ho 99.8 4.6E-20 1.6E-24 149.4 11.4 198 5-214 28-235 (350)
87 3g06_A SSPH2 (leucine-rich rep 99.8 5.2E-19 1.8E-23 152.7 18.6 78 5-93 79-156 (622)
88 4ezg_A Putative uncharacterize 99.8 2.1E-19 7.3E-24 133.9 12.5 150 52-214 41-192 (197)
89 2xot_A Amphoterin-induced prot 99.8 2.8E-19 9.6E-24 145.4 14.3 173 9-193 20-202 (361)
90 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5E-23 132.5 16.3 149 9-161 21-172 (229)
91 2v9t_B SLIT homolog 2 protein 99.8 1E-18 3.5E-23 132.5 15.1 149 10-162 14-166 (220)
92 1xeu_A Internalin C; cellular 99.8 2.1E-19 7.1E-24 139.9 10.8 166 27-212 17-182 (263)
93 3goz_A Leucine-rich repeat-con 99.8 6.6E-20 2.3E-24 149.1 8.2 201 6-212 21-263 (362)
94 4g8a_A TOLL-like receptor 4; l 99.8 7.1E-19 2.4E-23 152.3 15.0 156 5-163 50-216 (635)
95 2ast_B S-phase kinase-associat 99.8 8.7E-20 3E-24 146.7 8.2 194 7-210 70-280 (336)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6.2E-23 131.1 15.0 150 9-162 13-167 (220)
97 4ezg_A Putative uncharacterize 99.8 9.1E-19 3.1E-23 130.5 12.9 151 27-194 42-195 (197)
98 1jl5_A Outer protein YOPM; leu 99.8 2.4E-18 8.3E-23 143.9 16.9 118 5-134 151-268 (454)
99 2ca6_A RAN GTPase-activating p 99.8 3.5E-20 1.2E-24 152.0 4.8 200 6-210 31-282 (386)
100 2ast_B S-phase kinase-associat 99.8 3.4E-20 1.2E-24 149.1 3.9 213 7-234 47-277 (336)
101 3e6j_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 130.4 14.3 151 29-194 19-173 (229)
102 2o6s_A Variable lymphocyte rec 99.8 3E-18 1E-22 128.7 13.9 150 4-163 25-180 (208)
103 4ay9_X Follicle-stimulating ho 99.8 1.3E-18 4.5E-23 140.8 12.2 210 10-234 12-231 (350)
104 1jl5_A Outer protein YOPM; leu 99.8 7.2E-18 2.5E-22 141.0 16.9 102 51-161 149-250 (454)
105 1dce_A Protein (RAB geranylger 99.8 2.1E-21 7E-26 166.3 -5.2 190 6-208 348-566 (567)
106 2v9t_B SLIT homolog 2 protein 99.8 3.9E-18 1.3E-22 129.3 12.9 148 32-193 14-165 (220)
107 3cvr_A Invasion plasmid antige 99.8 4.6E-18 1.6E-22 145.3 14.6 165 5-199 78-250 (571)
108 2ell_A Acidic leucine-rich nuc 99.8 5.6E-18 1.9E-22 123.0 12.5 140 53-198 22-165 (168)
109 2ca6_A RAN GTPase-activating p 99.8 1.9E-19 6.6E-24 147.6 5.1 204 5-216 58-316 (386)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 9.6E-18 3.3E-22 127.1 13.3 149 31-193 13-166 (220)
111 2xot_A Amphoterin-induced prot 99.7 1.3E-17 4.4E-22 135.6 12.8 156 4-162 36-203 (361)
112 1z7x_W Ribonuclease inhibitor; 99.7 9.4E-20 3.2E-24 152.5 -1.2 183 5-193 26-240 (461)
113 1z7x_W Ribonuclease inhibitor; 99.7 3.1E-19 1.1E-23 149.3 -0.3 179 8-193 143-354 (461)
114 3goz_A Leucine-rich repeat-con 99.7 2E-18 6.8E-23 140.4 4.4 217 11-234 2-258 (362)
115 2ell_A Acidic leucine-rich nuc 99.7 1E-16 3.5E-21 116.3 11.1 125 6-134 23-158 (168)
116 2je0_A Acidic leucine-rich nuc 99.7 7.4E-17 2.5E-21 114.7 9.3 130 53-188 15-148 (149)
117 1a9n_A U2A', U2A'; complex (nu 99.7 1.3E-16 4.5E-21 116.6 9.8 136 51-193 15-153 (176)
118 4b8c_D Glucose-repressible alc 99.7 2.5E-17 8.5E-22 145.0 6.4 154 7-163 173-331 (727)
119 1w8a_A SLIT protein; signaling 99.7 3.7E-16 1.3E-20 115.9 10.4 124 32-161 11-139 (192)
120 2je0_A Acidic leucine-rich nuc 99.7 4.1E-16 1.4E-20 110.8 10.0 123 5-131 15-148 (149)
121 3sb4_A Hypothetical leucine ri 99.7 3.5E-16 1.2E-20 125.5 10.5 79 6-87 48-157 (329)
122 2wfh_A SLIT homolog 2 protein 99.6 1.8E-15 6E-20 112.3 11.8 124 32-161 13-139 (193)
123 1w8a_A SLIT protein; signaling 99.6 3.7E-15 1.3E-19 110.4 12.9 130 9-141 10-144 (192)
124 2wfh_A SLIT homolog 2 protein 99.6 4.3E-15 1.5E-19 110.2 13.2 123 10-136 13-139 (193)
125 2o6r_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 108.2 12.6 126 57-193 9-137 (177)
126 1a9n_A U2A', U2A'; complex (nu 99.6 1.6E-15 5.5E-20 110.8 9.3 130 27-161 17-153 (176)
127 2o6r_A Variable lymphocyte rec 99.6 9.7E-15 3.3E-19 106.7 13.4 105 56-161 29-137 (177)
128 4b8c_D Glucose-repressible alc 99.6 1.6E-16 5.5E-21 139.9 4.4 135 23-161 217-354 (727)
129 3ogk_B Coronatine-insensitive 99.6 1.4E-15 4.9E-20 130.9 8.3 150 6-156 163-326 (592)
130 3ogk_B Coronatine-insensitive 99.6 2.2E-15 7.6E-20 129.7 6.7 152 6-161 191-391 (592)
131 1ds9_A Outer arm dynein; leuci 99.6 2.6E-17 9E-22 122.7 -5.8 111 73-193 43-153 (198)
132 1dce_A Protein (RAB geranylger 99.6 2.7E-14 9.4E-19 122.3 12.0 125 55-187 441-567 (567)
133 1ds9_A Outer arm dynein; leuci 99.5 3.8E-16 1.3E-20 116.4 -0.5 145 43-193 37-185 (198)
134 3sb4_A Hypothetical leucine ri 99.5 2.5E-14 8.5E-19 114.7 7.4 213 6-234 24-326 (329)
135 3g39_A Variable lymphocyte rec 99.5 3E-13 1E-17 98.2 10.5 103 56-161 10-115 (170)
136 2p1m_B Transport inhibitor res 99.5 1.4E-14 4.8E-19 124.7 3.4 224 6-234 65-343 (594)
137 2r9u_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 97.5 10.7 101 58-161 15-118 (174)
138 2p1m_B Transport inhibitor res 99.5 1.1E-14 3.7E-19 125.4 2.0 33 178-210 370-405 (594)
139 3g39_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 93.6 11.8 102 9-113 11-115 (170)
140 2r9u_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 94.1 11.8 80 55-134 33-116 (174)
141 4fdw_A Leucine rich hypothetic 99.4 3.3E-12 1.1E-16 104.9 13.0 142 8-158 136-281 (401)
142 4fdw_A Leucine rich hypothetic 99.4 9.9E-12 3.4E-16 102.1 15.6 185 7-209 180-377 (401)
143 3un9_A NLR family member X1; l 99.4 8.5E-14 2.9E-18 113.3 1.8 134 55-193 101-252 (372)
144 3un9_A NLR family member X1; l 99.3 4.1E-13 1.4E-17 109.3 2.2 157 5-163 70-254 (372)
145 2ifg_A High affinity nerve gro 99.2 5.1E-11 1.7E-15 96.0 9.8 92 42-135 20-115 (347)
146 2ifg_A High affinity nerve gro 99.1 3E-10 1E-14 91.4 10.9 102 10-114 11-117 (347)
147 2ra8_A Uncharacterized protein 98.9 1E-09 3.5E-14 88.8 4.7 138 50-193 167-320 (362)
148 1io0_A Tropomodulin; LRR prote 98.8 2.1E-09 7.3E-14 78.8 3.2 80 51-130 32-128 (185)
149 1io0_A Tropomodulin; LRR prote 98.8 6.8E-09 2.3E-13 76.1 4.7 117 72-193 30-164 (185)
150 2ra8_A Uncharacterized protein 98.7 1.5E-08 5E-13 82.0 6.1 156 52-215 136-319 (362)
151 4gt6_A Cell surface protein; l 98.6 8.1E-07 2.8E-11 72.7 13.5 79 119-209 284-364 (394)
152 4fs7_A Uncharacterized protein 98.5 7.1E-07 2.4E-11 73.0 10.8 98 119-233 293-392 (394)
153 4fs7_A Uncharacterized protein 98.5 2E-06 7E-11 70.3 12.7 146 47-206 245-392 (394)
154 3rw6_A Nuclear RNA export fact 98.4 4.1E-07 1.4E-11 70.2 6.2 78 76-154 168-257 (267)
155 3e4g_A ATP synthase subunit S, 98.3 4.6E-07 1.6E-11 65.3 4.2 32 79-110 62-95 (176)
156 4gt6_A Cell surface protein; l 98.3 3.9E-06 1.3E-10 68.6 10.3 124 73-209 260-385 (394)
157 3rw6_A Nuclear RNA export fact 98.2 2.7E-06 9.3E-11 65.6 6.2 110 74-186 137-257 (267)
158 3e4g_A ATP synthase subunit S, 98.1 2.2E-06 7.5E-11 61.7 4.6 34 101-134 62-96 (176)
159 4h09_A Hypothetical leucine ri 98.1 5.9E-05 2E-09 61.1 12.3 134 49-196 211-348 (379)
160 4h09_A Hypothetical leucine ri 98.0 5.9E-05 2E-09 61.1 11.1 125 27-158 215-343 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 6.2E-05 2.1E-09 55.1 6.4 81 52-132 38-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 3.2E-05 1.1E-09 56.7 4.0 117 74-192 37-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.0011 3.6E-08 45.3 6.2 54 11-67 12-67 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.0014 4.7E-08 44.7 5.6 55 104-161 12-68 (130)
165 2lz0_A Uncharacterized protein 75.4 3.4 0.00012 26.2 3.7 35 119-155 16-50 (100)
166 2lz0_A Uncharacterized protein 69.9 8.4 0.00029 24.3 4.6 35 27-64 18-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.5e-27 Score=189.03 Aligned_cols=214 Identities=21% Similarity=0.306 Sum_probs=178.5
Q ss_pred ccCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEE
Q 042164 5 IRKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTL 83 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 83 (235)
...+++.|++++|.++.+|+.+ .+++|+.|++ +.+. +..+|.. +..+++|++|++++|.++.+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L-~~n~-l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI-DAAG-LMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEE-ESSC-CCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEEC-CCCC-ccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 3578999999999999999877 8999999999 5444 4477776 489999999999999999999999999999999
Q ss_pred eccCcCCC-Cc-cc---------cCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcE
Q 042164 84 CLDWCQLE-DV-AA---------IGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEE 152 (235)
Q Consensus 84 ~l~~~~l~-~~-~~---------~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 152 (235)
++++|... .+ .. ++.+++|++|++++|.++.+|..++.+++|++|++++|. +..++.. ++.+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCE
Confidence 99997654 33 33 345899999999999999999999999999999999998 5567776 889999999
Q ss_pred EEeccccccccccCCCCCccchhcccCCCccceeeecCCCC-CCCccc-cccccceeEEEecccccccchhhhhhhhhcc
Q 042164 153 LYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRLMK 230 (235)
Q Consensus 153 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 230 (235)
|++++|.+.+. .+..++.+++|+.|++++|.+. .+|..+ .+++|+.|+++ ++...+. .|.++.++++
T Consensus 234 L~Ls~n~~~~~--------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~-~n~~~~~--iP~~l~~L~~ 302 (328)
T 4fcg_A 234 LDLRGCTALRN--------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR-GCVNLSR--LPSLIAQLPA 302 (328)
T ss_dssp EECTTCTTCCB--------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT-TCTTCCC--CCGGGGGSCT
T ss_pred EECcCCcchhh--------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC-CCCchhh--ccHHHhhccC
Confidence 99999988744 5667888999999999998765 788777 88999999995 4444333 3477888888
Q ss_pred ccCC
Q 042164 231 LQGL 234 (235)
Q Consensus 231 L~~L 234 (235)
|+.+
T Consensus 303 L~~l 306 (328)
T 4fcg_A 303 NCII 306 (328)
T ss_dssp TCEE
T ss_pred ceEE
Confidence 7654
No 2
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.5e-25 Score=173.44 Aligned_cols=200 Identities=26% Similarity=0.386 Sum_probs=165.5
Q ss_pred cccCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCcc-CCCC-ChhhcCCcc
Q 042164 4 TIRKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIH-FSSL-PSSLGRLIN 79 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~l~~l~~ 79 (235)
..++++++|++++|.++.++.. + .+++|+.|++ .++.+..++...|..+++|++|++++|. ++.+ +..+..+++
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL--HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEEC--CCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 3467899999999999877754 3 8999999999 4455555655557889999999999997 7776 567889999
Q ss_pred CcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEec
Q 042164 80 LQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMD 156 (235)
Q Consensus 80 L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 156 (235)
|++|++++|.+.++ ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..+++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence 99999999998877 6688899999999999999977654 7889999999999998 666776668889999999999
Q ss_pred cccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEecccc
Q 042164 157 ISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNKW 215 (235)
Q Consensus 157 ~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~ 215 (235)
+|.+++. .+..+..+++|+.|++++|.+..+|... .+++|+.|++. ++.+
T Consensus 186 ~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~~ 237 (285)
T 1ozn_A 186 QNRVAHV--------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN-DNPW 237 (285)
T ss_dssp SSCCCEE--------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC-SSCE
T ss_pred CCccccc--------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc-CCCc
Confidence 9988744 4667788899999999999999888653 78899999994 5555
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5.1e-25 Score=177.03 Aligned_cols=194 Identities=22% Similarity=0.310 Sum_probs=169.2
Q ss_pred ccCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCC-CCChhhcC------
Q 042164 5 IRKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFS-SLPSSLGR------ 76 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~------ 76 (235)
.+++|++|++++|.+..+|..+ .+++|+.|++ +.+ .+..+|.. +..+++|++|++++|.+. .+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L-s~n-~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL-ARN-PLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEE-ESC-CCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hCCCCCEEECCCCCccchhHHHhccCCCCEEEC-CCC-ccccCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 3679999999999999999877 8999999999 544 45578876 589999999999997655 47766554
Q ss_pred ---CccCcEEeccCcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcE
Q 042164 77 ---LINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEE 152 (235)
Q Consensus 77 ---l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 152 (235)
+++|++|++++|.+..+ ..++.+++|++|++++|.++.+|..+..+++|++|++++|.+.+.+|.. ++.+++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCE
Confidence 99999999999999988 7799999999999999999999989999999999999999878888876 899999999
Q ss_pred EEeccccccccccCCCCCccchhcccCCCccceeeecCCCC-CCCccc-cccccceeEEE
Q 042164 153 LYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEW-VFVELQSYRIC 210 (235)
Q Consensus 153 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~-~~~~L~~l~l~ 210 (235)
|++++|.+.+. .+..+..+++|+.|++++|.+. .+|..+ .+++++.+++.
T Consensus 258 L~L~~n~~~~~--------~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 258 LILKDCSNLLT--------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp EECTTCTTCCB--------CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred EECCCCCchhh--------cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 99999987743 5667889999999999998865 899887 88888888773
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3.9e-24 Score=167.35 Aligned_cols=197 Identities=21% Similarity=0.344 Sum_probs=167.1
Q ss_pred cCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh-hcCCccCcEEe
Q 042164 6 RKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS-LGRLINLQTLC 84 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~ 84 (235)
..+.+.++++++.++.+|..+ .++++.|++ .++.+..++...|..+++|++|++++|.++.++.. +..+++|++|+
T Consensus 15 ~~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTAIPSNI-PADTKKLDL--QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp ETTTTEEECTTSCCSSCCSCC-CTTCSEEEC--CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCCEEEccCCCCCccCCCC-CCCCCEEEC--cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 456789999999999998876 478999999 55566667766678999999999999999988754 57899999999
Q ss_pred ccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 85 LDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 85 l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
+++|.+..+ ..+..+++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..+++|++|++++|.++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc
Confidence 999999977 5678899999999999999977654 7899999999999998 66777766889999999999999988
Q ss_pred ccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEecccc
Q 042164 162 WDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNKW 215 (235)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~ 215 (235)
.. ....+..+++|+.|++++|.++.+|... .+++|+.|++ .++.|
T Consensus 171 ~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l-~~N~~ 217 (270)
T 2o6q_A 171 RV--------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL-QENPW 217 (270)
T ss_dssp CC--------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC-CSSCB
T ss_pred Ee--------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe-cCCCe
Confidence 43 3345778899999999999999888764 7889999999 46655
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.8e-25 Score=178.62 Aligned_cols=209 Identities=20% Similarity=0.250 Sum_probs=136.3
Q ss_pred CCCcEEecCCCCCC---CCCCcC-CCCCccEEEeccC-CCCCcccchhhhhCCCCCcEEeecCccCC-CCChhhcCCccC
Q 042164 7 KGPIAISLPQRDIQ---ELPERL-QCPNLQLFLLFRE-GNGPMQISDHFFEGTEELKVLDFTGIHFS-SLPSSLGRLINL 80 (235)
Q Consensus 7 ~~l~~L~l~~~~l~---~i~~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L 80 (235)
.+++.|+++++.+. .+|..+ .+++|+.|++ +. +.....+|.. |..+++|++|++++|.++ .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L-~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-GGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEE-EEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeC-CCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46778888888876 366666 7888888888 43 4555556655 477888888888888877 467777788888
Q ss_pred cEEeccCcCCCC-c-cccCCCCCCcEEEecCCCCC-CcchhhccCC-CCcEEcccCCcCCCCCchhhhcCCCCCcEEEec
Q 042164 81 QTLCLDWCQLED-V-AAIGQLKKLEILSFRGSNIK-QLPLEIGQLT-RLQLLDLSNCWSLEVIPPNVISKLSRLEELYMD 156 (235)
Q Consensus 81 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 156 (235)
++|++++|.+.+ + ..++.+++|++|++++|.++ .+|..+..++ +|++|++++|.+.+.+|.. +..+. |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 888888887773 3 66777778888888888777 6677777776 7777777777644445444 44444 6666666
Q ss_pred cccccccccCC---------------CCCccchhcccCCCccceeeecCCCC-CCCccc-cccccceeEEEecccccccc
Q 042164 157 ISFSQWDKVEG---------------GSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEW-VFVELQSYRICIGNKWWSSW 219 (235)
Q Consensus 157 ~n~~~~~~~~~---------------~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~-~~~~L~~l~l~~~~~~~~~~ 219 (235)
+|.+++..... ........+..+++|++|++++|.+. .+|..+ .+++|+.|+++ ++...+..
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS-FNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC-SSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc-CCcccccC
Confidence 65554321100 00012333556677777777777776 666655 66777777773 44454343
Q ss_pred h
Q 042164 220 S 220 (235)
Q Consensus 220 ~ 220 (235)
+
T Consensus 285 p 285 (313)
T 1ogq_A 285 P 285 (313)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.6e-24 Score=169.99 Aligned_cols=198 Identities=24% Similarity=0.277 Sum_probs=171.4
Q ss_pred cccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEE
Q 042164 4 TIRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTL 83 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 83 (235)
..++++++++++++.++.+|..+ .++++.|++ .++.+..++...|..+++|++|++++|.++.++.. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L--~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEEC--TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEc--CCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 34678999999999999999877 479999999 55556666656679999999999999999987654 789999999
Q ss_pred eccCcCCCCc-cccCCCCCCcEEEecCCCCCCcch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 84 CLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 84 ~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
++++|.+..+ ..+..+++|++|++++|.++.++. .+..+++|++|++++|. +..++..++..+++|+.|++++|.++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC
Confidence 9999999988 678899999999999999998874 58999999999999998 66777777889999999999999998
Q ss_pred ccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEEEecccc
Q 042164 162 WDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRICIGNKW 215 (235)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~ 215 (235)
.. ....+..+++|+.|++++|.++.+|..+ ...+|+.+++ .+|.|
T Consensus 162 ~l--------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L-~~Np~ 207 (290)
T 1p9a_G 162 EL--------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL-HGNPW 207 (290)
T ss_dssp CC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC-CSCCB
T ss_pred cc--------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe-CCCCc
Confidence 43 3345678999999999999999999988 7788999999 56666
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2.5e-24 Score=169.64 Aligned_cols=210 Identities=22% Similarity=0.285 Sum_probs=174.9
Q ss_pred cEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCcEEeccCc
Q 042164 10 IAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQTLCLDWC 88 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~ 88 (235)
+.++++++.++.+|... .++++.|++ .++.+..++...|..+++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l--~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFL--HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEe--eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67999999999998765 689999999 66666667766679999999999999999985 678899999999999999
Q ss_pred C-CCCc--cccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccc
Q 042164 89 Q-LEDV--AAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 89 ~-l~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
. +..+ ..+..+++|++|++++|.++.+ +..+..+++|++|++++|. +..++...++.+++|++|++++|.++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 168 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV- 168 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc-
Confidence 7 8776 6788999999999999999976 4558899999999999998 6667766688999999999999998843
Q ss_pred cCCCCCccchhcccCCCccceeeecCCCCCC-Cccc-cccccceeEEEecccccccchhhhhhhhhccccCC
Q 042164 165 VEGGSNASLAELKGLSKLTTLNIQVPDAQIL-PQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
....+..+++|+.|++++|.+..+ |..+ .+++|+.|+++ ++...+ ..+..+..+++|+.|
T Consensus 169 -------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~--~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 169 -------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF-ANNLSA--LPTEALAPLRALQYL 230 (285)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCSC--CCHHHHTTCTTCCEE
T ss_pred -------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC-CCcCCc--CCHHHcccCcccCEE
Confidence 234578899999999999999866 5555 88999999995 555532 233567778777765
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=180.75 Aligned_cols=205 Identities=20% Similarity=0.313 Sum_probs=124.3
Q ss_pred ccCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 81 (235)
..++++.|++++|.++.++.. + .+++|+.|++ .++.+..++...|..+++|++|++++|.++.++. .+..+++|+
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQL--SRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEEC--CSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEEC--CCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 346778888888888766533 3 7888888888 4455555665556778888888888888877654 467778888
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCC-CCCCcch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecc
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGS-NIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDI 157 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 157 (235)
+|++++|.+..+ ..+..+++|++|++++| .+..++. .+..+++|++|++++|. +..+|. +..+++|++|++++
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDLSG 216 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEECTT
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEECCC
Confidence 888888777655 34555566666666553 3333333 24455555555555554 333432 34444444444444
Q ss_pred ccccccccCC----------------CCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEecccc
Q 042164 158 SFSQWDKVEG----------------GSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNKW 215 (235)
Q Consensus 158 n~~~~~~~~~----------------~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~ 215 (235)
|.+++..... ........+..+++|+.|+|++|.++.+|... .+++|+.|++ .+|.|
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L-~~Np~ 291 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL-HHNPW 291 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC-CSSCE
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc-CCCCc
Confidence 4444221000 00012345666777777777777777766654 5677777777 35554
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.8e-24 Score=181.05 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=119.7
Q ss_pred ccCCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 81 (235)
..++++.|++++|.++.+++ .+ .+++|+.|++ .++.+..++...|..+++|++|++++|.++.+++ .+..+++|+
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL--GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEEC--CCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 34577888888888876543 33 7788888888 4445555555556777888888888887777654 366777788
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCC-CCCCcch-hhccCCCCcEEcccCCcC---------------------C
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGS-NIKQLPL-EIGQLTRLQLLDLSNCWS---------------------L 136 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~-~~~~~~~-~~~~l~~L~~L~l~~~~~---------------------~ 136 (235)
+|++++|.+..+ ..+..+++|++|+++++ .+..++. .+..+++|++|++++|.+ +
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 887777777655 34555555555555552 3333332 244444444444444441 2
Q ss_pred CCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEeccc
Q 042164 137 EVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNK 214 (235)
Q Consensus 137 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~ 214 (235)
..+++..+..+++|++|++++|.++.. ....+..+++|+.|++++|.++.+|... .+++|+.|++. +|.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLI--------ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH-HNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC-SSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceE--------CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc-CCC
Confidence 223222345555555555555555422 2345666777777777777777666554 56677777773 444
Q ss_pred c
Q 042164 215 W 215 (235)
Q Consensus 215 ~ 215 (235)
|
T Consensus 302 ~ 302 (452)
T 3zyi_A 302 W 302 (452)
T ss_dssp E
T ss_pred c
Confidence 4
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=6.5e-25 Score=174.69 Aligned_cols=199 Identities=22% Similarity=0.238 Sum_probs=113.3
Q ss_pred ccCCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCCCccc---chhhhhCCCCCcEEeecCccCCCCChhhcCCcc
Q 042164 5 IRKGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNGPMQI---SDHFFEGTEELKVLDFTGIHFSSLPSSLGRLIN 79 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 79 (235)
.++++++|++++|.++.+|... .+++|+.|++ +. +.+... +.. +..+++|++|++++|.++.+|..+..+++
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L-~~-n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~ 102 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL-SS-NGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC-CS-SCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEEC-CC-CccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCC
Confidence 4568899999999998888754 7889999998 44 443322 333 34567777777777766665555566666
Q ss_pred CcEEeccCcCCCCc---cccCCCCCCcEEEecCCCCCC-cchhhccCCCCcEEcccCCcC--------------------
Q 042164 80 LQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSNIKQ-LPLEIGQLTRLQLLDLSNCWS-------------------- 135 (235)
Q Consensus 80 L~~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~-------------------- 135 (235)
|++|++++|.+.++ ..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 66666666655543 244555555555555555542 223344445555555555542
Q ss_pred ----CCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCC-ccc-cc-cccceeE
Q 042164 136 ----LEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILP-QEW-VF-VELQSYR 208 (235)
Q Consensus 136 ----~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p-~~~-~~-~~L~~l~ 208 (235)
+..+++..+..+++|++|++++|.+++. ....+..+++|+.|++++|.+...+ ..+ .+ ++|+.|+
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSBC--------CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCcc--------ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 2222222244444455555554444422 2224556677777777777766433 333 44 3677777
Q ss_pred EEecccc
Q 042164 209 ICIGNKW 215 (235)
Q Consensus 209 l~~~~~~ 215 (235)
+ .++.+
T Consensus 255 L-~~N~~ 260 (306)
T 2z66_A 255 L-TQNDF 260 (306)
T ss_dssp C-TTCCE
T ss_pred c-cCCCe
Confidence 7 34444
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.1e-24 Score=174.03 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=130.4
Q ss_pred ccCCCcEEecCC-CCCC-CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCC-CCChhhcCCccC
Q 042164 5 IRKGPIAISLPQ-RDIQ-ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFS-SLPSSLGRLINL 80 (235)
Q Consensus 5 ~~~~l~~L~l~~-~~l~-~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~L 80 (235)
.+++|++|++++ |.+. .+|..+ .+++|+.|++ +.+.....+|.. |..+++|++|++++|.++ .+|..+..+++|
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI-THTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEE-EEECCEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEEC-cCCeeCCcCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 356777888874 6665 566655 7778888887 544444455554 467777777777777777 466677777777
Q ss_pred cEEeccCcCCC-Cc-cccCCCC-CCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcCCCCCchh--------------
Q 042164 81 QTLCLDWCQLE-DV-AAIGQLK-KLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSLEVIPPN-------------- 142 (235)
Q Consensus 81 ~~L~l~~~~l~-~~-~~~~~l~-~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------- 142 (235)
++|++++|.+. .+ ..++.+. +|++|++++|.++ .+|..+..+. |++|++++|.+.+..+..
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 77777777776 33 5566665 6777777776665 4444444444 555555555422222222
Q ss_pred --------hhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC-CCCccccccccceeEEEecc
Q 042164 143 --------VISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEWVFVELQSYRICIGN 213 (235)
Q Consensus 143 --------~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~~~~~L~~l~l~~~~ 213 (235)
.+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+. .+|....+++|+.+++. +|
T Consensus 231 N~l~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~-~N 301 (313)
T 1ogq_A 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYG--------TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA-NN 301 (313)
T ss_dssp SEECCBGGGCCCCTTCCEEECCSSCCEE--------CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC-SS
T ss_pred CceeeecCcccccCCCCEEECcCCcccC--------cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc-CC
Confidence 03444555555555555542 35677889999999999999998 77776688999999994 55
Q ss_pred cc
Q 042164 214 KW 215 (235)
Q Consensus 214 ~~ 215 (235)
.+
T Consensus 302 ~~ 303 (313)
T 1ogq_A 302 KC 303 (313)
T ss_dssp SE
T ss_pred CC
Confidence 43
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.3e-24 Score=190.17 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=65.8
Q ss_pred CCCcEEecCCCCCC-CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC-CChhhcCCccCcEE
Q 042164 7 KGPIAISLPQRDIQ-ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS-LPSSLGRLINLQTL 83 (235)
Q Consensus 7 ~~l~~L~l~~~~l~-~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L 83 (235)
+++++|++++|.+. .+|..+ .+++|+.|++ +.+...+..|.. +..+++|++|++++|.++. +|..+..+++|++|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-s~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHL-SFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEEC-CSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEEC-cCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 34555555555544 333333 4455555555 222222223322 2444444444444444442 34444444444444
Q ss_pred eccCcCCCCc--cccCCCCCCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccc
Q 042164 84 CLDWCQLEDV--AAIGQLKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFS 160 (235)
Q Consensus 84 ~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 160 (235)
++++|.+.+. ..++.+++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|.. ++.+++|+.|++++|.+
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCcc
Confidence 4444444422 33444444444444444444 33444444444444444444433334333 44444444444444433
No 13
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.6e-24 Score=166.90 Aligned_cols=201 Identities=23% Similarity=0.269 Sum_probs=162.9
Q ss_pred ccCCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~ 81 (235)
..+++++|++++|.++.++. .+ .+++|+.|++ .++.+..++...|..+++|++|++++|.++.++ ..+..+++|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEEC--CCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 45679999999999997775 33 8999999999 555666677666789999999999999998755 6688999999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCC--cchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCc----EE
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ--LPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLE----EL 153 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~----~L 153 (235)
+|++++|.+..+ ..++.+++|++|++++|.++. +|..+..+++|++|++++|. +..++...+..+++|+ .+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence 999999999877 468899999999999999985 67889999999999999998 5555544465556665 89
Q ss_pred EeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEeccccccc
Q 042164 154 YMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNKWWSS 218 (235)
Q Consensus 154 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~~~~ 218 (235)
++++|.++.. ........+|+.|++++|.++.+|... .+++|+.|++ .+|.+.+.
T Consensus 183 ~ls~n~l~~~---------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l-~~N~~~c~ 239 (276)
T 2z62_A 183 DLSLNPMNFI---------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL-HTNPWDCS 239 (276)
T ss_dssp ECCSSCCCEE---------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC-CSSCBCCC
T ss_pred ecCCCccccc---------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEc-cCCccccc
Confidence 9999998843 233333458999999999999888865 7899999999 46666433
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=3.2e-23 Score=165.12 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=162.8
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
.++++++|++++|.+..++....+++|+.|++ .++.+..++. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L--~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLEL--KDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEEC--CSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEc--cCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 35789999999999998886558999999999 5555666665 689999999999999999876 588999999999
Q ss_pred ccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccc
Q 042164 85 LDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 85 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
+++|.+.++..++.+++|++|++++|.++.++. +..+++|++|++++|. +..++. +..+++|++|++++|.+++.
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~- 188 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISDI- 188 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCcC-
Confidence 999999988779999999999999999998765 8889999999999998 556665 78999999999999999833
Q ss_pred cCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEEe
Q 042164 165 VEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICI 211 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~ 211 (235)
..+..+++|+.|++++|.+..++....+++|+.|++..
T Consensus 189 ---------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 189 ---------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226 (308)
T ss_dssp ---------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred ---------hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccC
Confidence 23788999999999999999888644889999999963
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.5e-23 Score=185.94 Aligned_cols=133 Identities=23% Similarity=0.289 Sum_probs=73.4
Q ss_pred cCCCcEEecCCCCCC-CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC-CChhhcCCccCcE
Q 042164 6 RKGPIAISLPQRDIQ-ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS-LPSSLGRLINLQT 82 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~-~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~ 82 (235)
+++|++|++++|.+. .+|..+ .+++|+.|++ ..+...+.+|.. +..+++|++|++++|.++. +|..+..+++|++
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L-~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL-WLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC-CSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEEC-CCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 456666666666665 344444 5666666666 444433344443 3555666666666666553 4555556666666
Q ss_pred EeccCcCCCCc--cccCCCCCCcEEEecCCCCC-CcchhhccCCCCcEEcccCCcCCCCCc
Q 042164 83 LCLDWCQLEDV--AAIGQLKKLEILSFRGSNIK-QLPLEIGQLTRLQLLDLSNCWSLEVIP 140 (235)
Q Consensus 83 L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~ 140 (235)
|++++|.+.+. ..++.+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 66666665532 44555556666666666555 445555555555555555554443433
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-23 Score=173.01 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=56.7
Q ss_pred cCCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh-hcCCccCcE
Q 042164 6 RKGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS-LGRLINLQT 82 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~ 82 (235)
++++++|++++|.++.+++ .+ .+++|+.|++ .++.+..+++..|..+++|++|++++|.++.+|.. +..+++|++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM--GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEEC--CCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 3555666666666554443 22 5556666666 33333344444445556666666666655555543 355556666
Q ss_pred EeccCcCCCCc--cccCCCCCCcEEEecCCCCC
Q 042164 83 LCLDWCQLEDV--AAIGQLKKLEILSFRGSNIK 113 (235)
Q Consensus 83 L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~ 113 (235)
|++++|.+..+ ..++.+++|++|++++|.++
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 66666655544 33555555555555555544
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=4.3e-24 Score=173.27 Aligned_cols=211 Identities=22% Similarity=0.223 Sum_probs=129.7
Q ss_pred cCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh-hcCCccCcE
Q 042164 6 RKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS-LGRLINLQT 82 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~ 82 (235)
.+++++|++++|.++.++.. + .+++|+.|++ .++.+..++...|..+++|++|++++|.++.++.. +..+++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVL--TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEEC--CCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 45677777777777766552 3 6777777777 44444445444456677777777777777766654 666777777
Q ss_pred EeccCcCCCCc-c--ccCCCCCCcEEEecCC-CCCCcc-hhhccCCCCcEEcccCCcC----------------------
Q 042164 83 LCLDWCQLEDV-A--AIGQLKKLEILSFRGS-NIKQLP-LEIGQLTRLQLLDLSNCWS---------------------- 135 (235)
Q Consensus 83 L~l~~~~l~~~-~--~~~~l~~L~~L~l~~~-~~~~~~-~~~~~l~~L~~L~l~~~~~---------------------- 135 (235)
|++++|.+..+ . .++.+++|++|++++| .++.++ ..+..+++|++|++++|.+
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 77777776655 2 4566666666666666 344432 3355556666666665552
Q ss_pred -CCCCchhhhcCCCCCcEEEeccccccccccCCCC-----------------------CccchhcccCCCccceeeecCC
Q 042164 136 -LEVIPPNVISKLSRLEELYMDISFSQWDKVEGGS-----------------------NASLAELKGLSKLTTLNIQVPD 191 (235)
Q Consensus 136 -~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n~ 191 (235)
++.++...+..+++|++|++++|.+++....... ..++..+..+++|+.|++++|.
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 2333333233345555555555555432111000 0123456778899999999999
Q ss_pred CCCCCccc--cccccceeEEEecccccccc
Q 042164 192 AQILPQEW--VFVELQSYRICIGNKWWSSW 219 (235)
Q Consensus 192 ~~~~p~~~--~~~~L~~l~l~~~~~~~~~~ 219 (235)
++.+|..+ .+++|+.|++ .+|.+.+..
T Consensus 289 l~~i~~~~~~~l~~L~~L~L-~~N~~~~~~ 317 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWL-HTNPWDCSC 317 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEEC-CSSCBCCCH
T ss_pred CCccCHHHHhcCCCCCEEEe-eCCCccCcC
Confidence 99998875 7889999999 466664443
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.1e-23 Score=167.65 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=107.3
Q ss_pred cCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEE
Q 042164 6 RKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTL 83 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 83 (235)
.++++.|++++|.++.++.. + .+++|++|++ .++.+..+.+..|..+++|++|++++|.++.+|..+. ++|++|
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL--INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQEL 126 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEEC--CCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEE
Confidence 45677777777777766553 3 6777777777 3334444433335667777777777776665554322 445555
Q ss_pred eccCcCCCCc--cccCCCCCCcEEEecCCCCC---CcchhhccCC---------------------CCcEEcccCCcCCC
Q 042164 84 CLDWCQLEDV--AAIGQLKKLEILSFRGSNIK---QLPLEIGQLT---------------------RLQLLDLSNCWSLE 137 (235)
Q Consensus 84 ~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~---------------------~L~~L~l~~~~~~~ 137 (235)
++++|.+..+ ..++.+++|++|++++|.++ ..+..+..++ +|++|++++|. +.
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-l~ 205 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK-IT 205 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC-CC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc-CC
Confidence 5555554443 33444444555555444443 1222344444 44444444444 22
Q ss_pred CCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEEE
Q 042164 138 VIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRIC 210 (235)
Q Consensus 138 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~ 210 (235)
.+++..+..+++|++|++++|.+++. ....+..+++|+.|++++|.+..+|..+ .+++|+.|++.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAV--------DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEE--------CTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCcee--------ChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 23223355666666666666665522 2335666677777777777777777666 66777777773
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=6.1e-23 Score=165.97 Aligned_cols=143 Identities=22% Similarity=0.319 Sum_probs=64.3
Q ss_pred hCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEccc
Q 042164 52 EGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLS 131 (235)
Q Consensus 52 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 131 (235)
..+++|++|++++|.+..++. +..+++|+++++++|.+.++..+..+++|+.+++++|.++.++. +..+++|++|+++
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIG 229 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC
T ss_pred hhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEcc
Confidence 344444444444444443332 44445555555555554444333444444444444444433322 4445555555555
Q ss_pred CCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEE
Q 042164 132 NCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
+|. +..++. +..+++|++|++++|.++. ...+..+++|+.|++++|.+..++....+++|+.|++
T Consensus 230 ~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 230 NNK-ITDLSP--LANLSQLTWLEIGTNQISD----------INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294 (347)
T ss_dssp SSC-CCCCGG--GTTCTTCCEEECCSSCCCC----------CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred CCc-cCCCcc--hhcCCCCCEEECCCCccCC----------ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence 554 333333 4455555555555554441 1234444445555555554444433224444444444
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=175.06 Aligned_cols=176 Identities=20% Similarity=0.282 Sum_probs=116.1
Q ss_pred CCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCc-cCCCCCh-hhcCCccCcE
Q 042164 7 KGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGI-HFSSLPS-SLGRLINLQT 82 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~l~~l~~L~~ 82 (235)
++|++|++++|.++.++... .+++|+.|++ .++.+..++...|..+++|++|++++| .++.++. .+..+++|++
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWL--RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC--CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeC--CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 44555555555555444422 4555555555 333344444444455555555555552 3333332 4566777777
Q ss_pred EeccCcCCCCccccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 83 LCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 83 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
|++++|.+..++.+..+++|++|++++|.++.+ +..+..+++|+.|++++|. +..++...+..+++|++|++++|.++
T Consensus 190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp EECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred ecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCC
Confidence 777777777776677777888888888887755 4557788888888888887 55555555788888888888888887
Q ss_pred ccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 162 WDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
.. ....+..+++|+.|++++|++.
T Consensus 269 ~~--------~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 269 LL--------PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CC--------CTTTTSSCTTCCEEECCSSCEE
T ss_pred cc--------ChhHhccccCCCEEEcCCCCcc
Confidence 43 3456778899999999999975
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.4e-23 Score=174.17 Aligned_cols=175 Identities=21% Similarity=0.238 Sum_probs=119.7
Q ss_pred CCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecC-ccCCCCCh-hhcCCccCcEE
Q 042164 8 GPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTG-IHFSSLPS-SLGRLINLQTL 83 (235)
Q Consensus 8 ~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~l~~L~~L 83 (235)
+|++|++++|.++.++... .+++|+.|++ .++.+..++...|..+++|+.|++++ +.++.++. .+..+++|++|
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWL--RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEEC--CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEEC--CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 4444444444444443322 3444444444 22333333333344444444444444 22333332 46677888888
Q ss_pred eccCcCCCCccccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccc
Q 042164 84 CLDWCQLEDVAAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQW 162 (235)
Q Consensus 84 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 162 (235)
++++|.+.+++.+..+++|++|++++|.++.+ |..+..+++|+.|++++|. +..+++..+..+++|++|++++|.++.
T Consensus 202 ~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp ECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCc
Confidence 88888888777788889999999999999866 5569999999999999998 555555558999999999999999984
Q ss_pred cccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 163 DKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
. ....+..+++|+.|++++|++.
T Consensus 281 ~--------~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 281 L--------PHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp C--------CTTSSTTCTTCCEEECCSSCEE
T ss_pred c--------ChHHhccccCCCEEEccCCCcC
Confidence 4 3456778899999999999986
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-23 Score=172.90 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=111.9
Q ss_pred ccCCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~ 81 (235)
.+++++.++++++.++.+|... .+++|+.|++ .++.+..++...|..+++|++|++++|.++.++ ..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEEC--CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4688999999999999998865 7999999999 555666677666799999999999999999865 5588999999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcch-hhccCCCCcEEcccCCcC
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPL-EIGQLTRLQLLDLSNCWS 135 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 135 (235)
+|++++|.+..+ ..++.+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 999999999988 346899999999999999997654 588999999999999973
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.5e-23 Score=174.20 Aligned_cols=224 Identities=20% Similarity=0.169 Sum_probs=158.0
Q ss_pred ccCCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 81 (235)
..++++.|++++|.++.+++ .+ .+++|+.|++ .++.+..+++..|..+++|++|++++|.++.+|. .+..+++|+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEEC--CCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 45688999999999987754 34 8999999999 4455555655557889999999999999988775 468899999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccc
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDIS 158 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 158 (235)
+|++++|.+..+ ..+..+++|++|++++|.++.+ +..+..+++|++|++++|. +..++...+..+++|+.|++++|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCC
Confidence 999999998866 6788899999999999988855 4458888999999999998 66677666888899999999988
Q ss_pred cccccccCC----------------CCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEecccccccch
Q 042164 159 FSQWDKVEG----------------GSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNKWWSSWS 220 (235)
Q Consensus 159 ~~~~~~~~~----------------~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~~~~~~ 220 (235)
.+....... .....+.......+|+.|++++|.++.+|... .+++|+.|+++ ++... ..
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~--~~ 263 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS-YNPIS--TI 263 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC-SSCCC--EE
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC-CCcCC--cc
Confidence 877441110 00011111112235666666666666666433 66677777774 33331 11
Q ss_pred hhhhhhhhccccCC
Q 042164 221 VKSGLSRLMKLQGL 234 (235)
Q Consensus 221 ~~~~~~~l~~L~~L 234 (235)
.+..+.++++|+.|
T Consensus 264 ~~~~~~~l~~L~~L 277 (477)
T 2id5_A 264 EGSMLHELLRLQEI 277 (477)
T ss_dssp CTTSCTTCTTCCEE
T ss_pred ChhhccccccCCEE
Confidence 22445566665544
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=173.64 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=155.2
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCcEEeccC
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQTLCLDW 87 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~ 87 (235)
....+++++.++.+|..+ .++|+.|++ .++.+..++...|..+++|++|++++|.++.+ +..+..+++|++|++++
T Consensus 33 ~~~c~~~~~~l~~iP~~~-~~~L~~L~l--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGL-TEAVKSLDL--SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCSSCCTTC-CTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCcccccccc-cccCcEEEC--CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 345888999999999876 469999999 55666677776679999999999999999986 45689999999999999
Q ss_pred cCCCCc--cccCCCCCCcEEEecCCCCCCcch--hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccccc
Q 042164 88 CQLEDV--AAIGQLKKLEILSFRGSNIKQLPL--EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWD 163 (235)
Q Consensus 88 ~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 163 (235)
|.+.++ ..++.+++|++|++++|.++.+|. .+..+++|++|++++|...+.+++..++.+++|++|++++|.+++.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 999988 448999999999999999998887 5889999999999999546777665689999999999999998744
Q ss_pred ccCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEE
Q 042164 164 KVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRIC 210 (235)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~ 210 (235)
.+..++.+++|++|++++|.+..+|... .+++|+.|+++
T Consensus 190 --------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 190 --------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp --------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred --------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence 3455666667777777777666665544 35666666664
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.5e-23 Score=179.78 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=67.1
Q ss_pred cCCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh-hcCCccCcE
Q 042164 6 RKGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS-LGRLINLQT 82 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~ 82 (235)
+++|+.|++++|.+..+++ .+ .+++|+.|++ .++.+..+++..|+.+++|++|++++|.++.+|+. |..+++|++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM--GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEEC--CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 4566777777777665543 33 6677777777 33344445555556667777777777766666544 466677777
Q ss_pred EeccCcCCCCc--cccCCCCCCcEEEecCCCCCC
Q 042164 83 LCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ 114 (235)
Q Consensus 83 L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~ 114 (235)
|++++|.+.++ ..++.+++|++|++++|.++.
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 77777766655 356666666666666666553
No 26
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.1e-23 Score=161.84 Aligned_cols=193 Identities=14% Similarity=0.226 Sum_probs=160.1
Q ss_pred ccCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecC-ccCCCCC-hhhcCCccC
Q 042164 5 IRKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTG-IHFSSLP-SSLGRLINL 80 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~-~~l~~l~~L 80 (235)
..+++++|++++|.++.+++. + .+++|+.|++ +.+..+..++...|..+++|++|++++ |.++.++ ..+..+++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l-~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV-SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEE-ECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeC-CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 345899999999999988774 3 8999999999 544447778776678999999999998 8898876 467889999
Q ss_pred cEEeccCcCCCCccccCCCCCCc---EEEecCC-CCCCcchh-hccCCCCc-EEcccCCcCCCCCchhhhcCCCCCcEEE
Q 042164 81 QTLCLDWCQLEDVAAIGQLKKLE---ILSFRGS-NIKQLPLE-IGQLTRLQ-LLDLSNCWSLEVIPPNVISKLSRLEELY 154 (235)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 154 (235)
++|++++|.+.+++.++.+++|+ +|++++| .++.++.. +..+++|+ +|++++|. +..++..++.. ++|++|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEE
Confidence 99999999998886688888888 9999999 88877764 88899999 99999998 56788765555 8899999
Q ss_pred ecccc-ccccccCCCCCccchhcccC-CCccceeeecCCCCCCCccccccccceeEE
Q 042164 155 MDISF-SQWDKVEGGSNASLAELKGL-SKLTTLNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 155 l~~n~-~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
+++|. ++.. ....+..+ ++|+.|++++|.++.+|.. .+++|+.|++
T Consensus 186 L~~n~~l~~i--------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 186 LNKNKYLTVI--------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp CTTCTTCCEE--------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred cCCCCCcccC--------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 99995 7733 34567778 8999999999999988887 7889998887
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.4e-22 Score=158.52 Aligned_cols=178 Identities=26% Similarity=0.374 Sum_probs=155.0
Q ss_pred ccCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 81 (235)
..+++++|++++|.++.++.. + .+++|+.|++ .++.+..++...|..+++|++|++++|.++.++. .+..+++|+
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL--NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC--CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC--CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 456899999999999988764 3 8999999999 5666677888878899999999999999998764 568899999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccc
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDIS 158 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 158 (235)
+|++++|.+..+ ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..+++|++|++++|
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC
Confidence 999999999987 5688999999999999999988765 7899999999999998 66677666889999999999999
Q ss_pred cccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 159 FSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
.++.. ....+..+++|+.|++++|++.
T Consensus 192 ~l~~~--------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 192 QLKRV--------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcC--------CHHHhccccCCCEEEecCCCee
Confidence 99843 3345778899999999999986
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=175.08 Aligned_cols=128 Identities=23% Similarity=0.257 Sum_probs=82.3
Q ss_pred ccCCCcEEecCCCCCCCC-CCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQEL-PERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~ 81 (235)
.+++|++|++++|.++.+ |..+ .+++|+.|++ .++.+..++...|..+++|++|++++|.++.+ +..+..+++|+
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL--RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEEC--CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 356777777777777755 3334 6777777777 44555556665566777777777777777653 44566677777
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCc
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCW 134 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 134 (235)
+|++++|.+..+ ..++.+++|++|++++|.++.++.. +..+++|+.|++++|.
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 777777766654 4566666666666666666655432 5555555555555554
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.2e-23 Score=167.39 Aligned_cols=190 Identities=22% Similarity=0.215 Sum_probs=148.6
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC---ChhhcCCccCcEEec
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL---PSSLGRLINLQTLCL 85 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l 85 (235)
-+.++++++.++.+|... .++++.|++ .++.+..++...|..+++|++|++++|.++.+ +..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~~-~~~l~~L~L--~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCCC-CCCCCEEEC--CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 357899999999999876 579999999 55666688888789999999999999999854 567788999999999
Q ss_pred cCcCCCCc-cccCCCCCCcEEEecCCCCCCcch--hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccc
Q 042164 86 DWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPL--EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQW 162 (235)
Q Consensus 86 ~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 162 (235)
++|.+..+ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.+ ...++..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCcccc
Confidence 99999888 678899999999999999997764 688999999999999984 44444448889999999999998874
Q ss_pred cccCCCCCccchhcccCCCccceeeecCCCCCCC-ccc-cccccceeEE
Q 042164 163 DKVEGGSNASLAELKGLSKLTTLNIQVPDAQILP-QEW-VFVELQSYRI 209 (235)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p-~~~-~~~~L~~l~l 209 (235)
. ..+..+..+++|+.|++++|.+..++ ..+ .+++|+.|++
T Consensus 165 ~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 165 N-------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp G-------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred c-------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 2 12344555556666666666655442 223 4555555555
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=3.8e-23 Score=166.34 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=95.0
Q ss_pred cCCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEE
Q 042164 6 RKGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTL 83 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 83 (235)
+++++.|++++|.+..+++ .+ .+++|+.|++ .++.+..++...|..+++|++|++++|.++.+|..+. ++|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVL--VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEEC--CCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 3456666666666655433 22 5666666666 3333333433334566666666666666655554332 556666
Q ss_pred eccCcCCCCc--cccCCCCCCcEEEecCCCCCC---cchhhccC--------------------CCCcEEcccCCcCCCC
Q 042164 84 CLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ---LPLEIGQL--------------------TRLQLLDLSNCWSLEV 138 (235)
Q Consensus 84 ~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l--------------------~~L~~L~l~~~~~~~~ 138 (235)
++++|.+..+ ..++.+++|++|++++|.++. .+..+..+ ++|++|++++|. +..
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~ 207 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQA 207 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCc
Confidence 6666655544 335556666666666665541 12223322 233333333333 222
Q ss_pred CchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEE
Q 042164 139 IPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRI 209 (235)
Q Consensus 139 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l 209 (235)
++...+..+++|++|++++|.+++. ....+..+++|+.|++++|.+..+|..+ .+++|+.|++
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMI--------ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCC--------CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEEC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcC--------ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEEC
Confidence 2222244444444444444444421 2224455556666666666666565555 5556666665
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.4e-23 Score=161.06 Aligned_cols=187 Identities=24% Similarity=0.281 Sum_probs=143.8
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCcEE
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTL 83 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L 83 (235)
.+++++.|+++++.+..++....+++|+.|++ .++.+..++ .+..+++|++|++++|.++.+++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l--~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL--GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEEC--TTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEEC--CCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 35678889999988887776668889999998 444444444 25788899999999998887654 46788899999
Q ss_pred eccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccc
Q 042164 84 CLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFS 160 (235)
Q Consensus 84 ~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 160 (235)
++++|.+.++ ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..+++..++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcC
Confidence 9999988877 4478888999999999988877654 6788899999999988 5566666578888999999999888
Q ss_pred cccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEE
Q 042164 161 QWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
++. ....+..+++|+.|++++|++.. .+++++.+++
T Consensus 194 ~~~--------~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~ 229 (272)
T 3rfs_A 194 KSV--------PDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSE 229 (272)
T ss_dssp SCC--------CTTTTTTCTTCCEEECCSSCBCC-----CTTTTHHHHH
T ss_pred Ccc--------CHHHHhCCcCCCEEEccCCCccc-----cCcHHHHHHH
Confidence 743 33456778889999999887652 2344555555
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.4e-22 Score=161.50 Aligned_cols=214 Identities=13% Similarity=0.137 Sum_probs=145.4
Q ss_pred cCCCcEEecCCCCCCCC-CCcC-CCCCccEEEeccCCCCCccc---------------------chhhhhCCCCCcEEee
Q 042164 6 RKGPIAISLPQRDIQEL-PERL-QCPNLQLFLLFREGNGPMQI---------------------SDHFFEGTEELKVLDF 62 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i-~~~~-~l~~L~~L~l~~~~~~~~~~---------------------~~~~~~~~~~L~~L~l 62 (235)
+++|++|++++|.++.+ |..+ .+++|+.|++ .++.+..+ +...|..+++|++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYL--SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC--CCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 45677777777776655 3334 6666666666 33333333 3333455666666666
Q ss_pred cCccCCC---CChhhcCCccCcEEeccCcCCCCc-cccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCC
Q 042164 63 TGIHFSS---LPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLE 137 (235)
Q Consensus 63 ~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~ 137 (235)
++|.++. .+..+..+++|++|++++|.+..+ ..+ .++|++|++++|.++.+ +..+..+++|+.|++++|. +.
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 229 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-IS 229 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-Cc
Confidence 6665542 334556666677777766666655 222 26788888888888855 5568899999999999998 55
Q ss_pred CCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCcccc--------ccccceeEE
Q 042164 138 VIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWV--------FVELQSYRI 209 (235)
Q Consensus 138 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~--------~~~L~~l~l 209 (235)
.++...+..+++|++|++++|.++ .++..+..+++|+.|++++|.++.++.... .+.++.+++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~---------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV---------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS---------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred eeChhhccCCCCCCEEECCCCcCc---------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 555545889999999999999988 345667889999999999999998876542 366788888
Q ss_pred EecccccccchhhhhhhhhccccCC
Q 042164 210 CIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
.+|.+......+..+..+.+++.+
T Consensus 301 -~~N~~~~~~i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 301 -FSNPVQYWEIQPSTFRCVYVRAAV 324 (330)
T ss_dssp -CSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred -ecCcccccccCccccccccceeEE
Confidence 456553222344566666666543
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.9e-23 Score=172.23 Aligned_cols=133 Identities=25% Similarity=0.396 Sum_probs=109.2
Q ss_pred ccCCCcEEecCCCCCCCC-CCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQEL-PERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~ 81 (235)
..+++++|++++|.++.+ |..+ .+++|+.|++ +.+.....++...|..+++|++|++++|.++.+ |..+..+++|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKV-EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEEC-CCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEEC-cCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 346899999999999876 4445 8999999999 655555567766678999999999999999874 67889999999
Q ss_pred EEeccCcCCCCc----cccCCCCCCcEEEecCCCCCCc-chh-hccCCCCcEEcccCCcCCCC
Q 042164 82 TLCLDWCQLEDV----AAIGQLKKLEILSFRGSNIKQL-PLE-IGQLTRLQLLDLSNCWSLEV 138 (235)
Q Consensus 82 ~L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~ 138 (235)
+|++++|.+.+. ..++.+++|++|++++|.++.+ |.. +..+++|++|++++|.+.+.
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 999999998863 3388899999999999999865 544 78899999999999874443
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.1e-22 Score=163.72 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=154.2
Q ss_pred ccCCCcEEecCCCCCCCC-CCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQEL-PERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 81 (235)
.+++|++|++++|.++.+ |..+ .+++|+.|++ .++.+..+|...+ ++|++|++++|.++.++. .+..+++|+
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI--SKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC--CSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC--CCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 456788888888888765 4444 7788888888 4445555665432 677777777777776653 466777777
Q ss_pred EEeccCcCCCC--c--cccCCC--------------------CCCcEEEecCCCCCCcc-hhhccCCCCcEEcccCCcCC
Q 042164 82 TLCLDWCQLED--V--AAIGQL--------------------KKLEILSFRGSNIKQLP-LEIGQLTRLQLLDLSNCWSL 136 (235)
Q Consensus 82 ~L~l~~~~l~~--~--~~~~~l--------------------~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 136 (235)
+|++++|.+.. + ..++.+ ++|++|++++|.++.++ ..+..+++|+.|++++|. +
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l 229 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-I 229 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-C
T ss_pred EEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-C
Confidence 77777776642 1 222221 47788888888888665 568899999999999998 5
Q ss_pred CCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--------cccccceeE
Q 042164 137 EVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--------VFVELQSYR 208 (235)
Q Consensus 137 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--------~~~~L~~l~ 208 (235)
..+++..+..+++|++|++++|.++ .++..+..+++|+.|++++|.++.++... .++.++.++
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~---------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKLS---------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCCC---------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred CcCChhHhhCCCCCCEEECCCCcCe---------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 5566555899999999999999998 34566888999999999999999887654 146688898
Q ss_pred EEecccccccchhhhhhhhhccccCC
Q 042164 209 ICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
+ .++.+......+..+..+++|+.+
T Consensus 301 l-~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 301 L-FNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp C-CSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred e-ecCcccccccCcccccccchhhhh
Confidence 8 466553223345677888887765
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.5e-22 Score=174.97 Aligned_cols=225 Identities=16% Similarity=0.166 Sum_probs=167.0
Q ss_pred cccCCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccC
Q 042164 4 TIRKGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINL 80 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L 80 (235)
...+++++|++++|.++.+++ .+ .+++|++|++ .++.+..+.+..|+.+++|++|++++|.++.+ |..+..+++|
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL--TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEEC--CCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 345689999999999997744 44 8999999999 44555556555578999999999999999874 6678999999
Q ss_pred cEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcc-hhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCc--EEEe
Q 042164 81 QTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLP-LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLE--ELYM 155 (235)
Q Consensus 81 ~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l 155 (235)
++|++++|.+.++ ..++.+++|++|++++|.++.++ +.+..+++|++|++++|. +..+++..++.+++|+ ++++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEec
Confidence 9999999999976 77889999999999999998653 334458999999999998 5555555588888888 8888
Q ss_pred ccccccccccCCCC------------------------------------------------------------------
Q 042164 156 DISFSQWDKVEGGS------------------------------------------------------------------ 169 (235)
Q Consensus 156 ~~n~~~~~~~~~~~------------------------------------------------------------------ 169 (235)
++|.+++.......
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 88877654221100
Q ss_pred -CccchhcccCCCccceeeecCCCCCCCccc-cccccceeEEEecccccccchhhhhhhhhccccCC
Q 042164 170 -NASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 170 -~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
......++.+++|++|++++|.++.+|..+ .+++|+.|++. ++...+ ..+..++++++|+.|
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-~n~l~~--~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFEN--LCQISASNFPSLTHL 330 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECT-TCCCSB--GGGGCGGGCTTCSEE
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECc-cCCcCc--CchhhhhccCcCCEE
Confidence 011223667788999999999988888877 77888888884 444321 122445555555443
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.7e-23 Score=177.52 Aligned_cols=215 Identities=17% Similarity=0.164 Sum_probs=154.2
Q ss_pred ccCCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 81 (235)
.+.+++.++++++.+..+|+.. .+++|+.|++ .++.+..++...|..+++|++|++++|.++.+++ .+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC--CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3578899999999999998875 7999999999 5555666666557999999999999999998664 578999999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcch-hhccCCCCcEEcccCCcCCCCCchhh---------------
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNV--------------- 143 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~--------------- 143 (235)
+|++++|.+..+ ..++.+++|++|++++|.++.++. .++.+++|++|++++|.+ ..++...
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhhhcccCccc
Confidence 999999999988 447899999999999999997654 588999999999999973 3333111
Q ss_pred --------------------------------------------hcCCCCCcEEEeccccccccccCCCCCccchhcccC
Q 042164 144 --------------------------------------------ISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGL 179 (235)
Q Consensus 144 --------------------------------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 179 (235)
++.+++|+.|++++|.+++. .+..++.+
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l 277 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI--------MYHPFVKM 277 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE--------ESGGGTTC
T ss_pred cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC--------CHHHhcCc
Confidence 23334444444444444422 34455666
Q ss_pred CCccceeeecCCCCCCCccc-cccccceeEEEecccccccchhhhhhhhhccccCC
Q 042164 180 SKLTTLNIQVPDAQILPQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 180 ~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
++|+.|++++|.+..+|... .+++|+.|+++ ++... . .+.++..+++|++|
T Consensus 278 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls-~N~l~-~--i~~~~~~l~~L~~L 329 (597)
T 3oja_B 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLS-HNHLL-H--VERNQPQFDRLENL 329 (597)
T ss_dssp SSCCEEECTTSCCCEEECSSSCCTTCCEEECC-SSCCC-C--CGGGHHHHTTCSEE
T ss_pred cCCCEEECCCCCCCCCCcccccCCCCcEEECC-CCCCC-c--cCcccccCCCCCEE
Confidence 66666666666666666555 56677777764 33332 1 22345555555544
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=8.3e-23 Score=170.83 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=46.9
Q ss_pred cCCCcEEecCCCCCCCC-CCcC-CCCCccEEEeccCCCCCcccch-hhhhCCCCCcEEeecCccCCCC-Chh-hcCCccC
Q 042164 6 RKGPIAISLPQRDIQEL-PERL-QCPNLQLFLLFREGNGPMQISD-HFFEGTEELKVLDFTGIHFSSL-PSS-LGRLINL 80 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i-~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~-l~~l~~L 80 (235)
+++|++|++++|.+..+ |..+ .+++|++|++ +.+......+. ..|..+++|++|++++|.++.+ |.. +..+++|
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTL-TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC-TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeC-CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 45666666666666544 3333 5666666666 33333222221 2245566666666666666654 333 5566666
Q ss_pred cEEeccCcCCC
Q 042164 81 QTLCLDWCQLE 91 (235)
Q Consensus 81 ~~L~l~~~~l~ 91 (235)
++|++++|.+.
T Consensus 157 ~~L~L~~n~l~ 167 (455)
T 3v47_A 157 HVLDLTFNKVK 167 (455)
T ss_dssp CEEECTTCCBS
T ss_pred cEEeCCCCccc
Confidence 66666666544
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=4e-23 Score=179.65 Aligned_cols=223 Identities=13% Similarity=0.148 Sum_probs=143.3
Q ss_pred cCCCcEEecCCCCCCCCCC--cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCcc-Cc
Q 042164 6 RKGPIAISLPQRDIQELPE--RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLIN-LQ 81 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~--~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~-L~ 81 (235)
+++|++|++++|.++.+|. .+ .+++|+.|++ +.+...+.+| . |..+++|++|++++|.++.+|..+..+++ |+
T Consensus 304 l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L-~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC-LYNQLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380 (636)
T ss_dssp GGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEEC-CSCCCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCC
T ss_pred CCCCCEEECCCCcCCccCchhhhccCCCCCEEeC-cCCcCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCc
Confidence 4788888888888888887 44 7888888888 5554444677 3 57777888888888877777777777777 88
Q ss_pred EEeccCcCCCCc-cccCCC--CCCcEEEecCCCCC-Ccchhhc-------cCCCCcEEcccCCcCCCCCchhhhcCCCCC
Q 042164 82 TLCLDWCQLEDV-AAIGQL--KKLEILSFRGSNIK-QLPLEIG-------QLTRLQLLDLSNCWSLEVIPPNVISKLSRL 150 (235)
Q Consensus 82 ~L~l~~~~l~~~-~~~~~l--~~L~~L~l~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 150 (235)
+|++++|.+..+ ..++.. ++|++|++++|.++ ..|..+. .+++|++|++++|. +..+|..++..+++|
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPL 459 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCC
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCC
Confidence 888887777766 334433 25666666666665 2344444 55566666666665 445555545556666
Q ss_pred cEEEeccccccccccCC----------------------CCCccchhcc--cCCCccceeeecCCCCCCCccc-cccccc
Q 042164 151 EELYMDISFSQWDKVEG----------------------GSNASLAELK--GLSKLTTLNIQVPDAQILPQEW-VFVELQ 205 (235)
Q Consensus 151 ~~L~l~~n~~~~~~~~~----------------------~~~~~~~~~~--~~~~L~~L~l~~n~~~~~p~~~-~~~~L~ 205 (235)
++|++++|.++...... ....++..+. .+++|+.|++++|.+..+|..+ .+++|+
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~ 539 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLK 539 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCC
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCC
Confidence 66666666555221100 0012344444 6778888888888887777776 777788
Q ss_pred eeEEEe-----cccccccchhhhhhhhhccccCC
Q 042164 206 SYRICI-----GNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 206 ~l~l~~-----~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
.|+++. ++...+. .+.++.++++|+.|
T Consensus 540 ~L~Ls~N~~ls~N~l~~~--~p~~l~~l~~L~~L 571 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLRE--WPEGITLCPSLTQL 571 (636)
T ss_dssp EEECCSCBCTTCCBCCCC--CCTTGGGCSSCCEE
T ss_pred EEECCCCcccccCccccc--ChHHHhcCCCCCEE
Confidence 887743 2333222 33567777777665
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2.2e-22 Score=173.97 Aligned_cols=221 Identities=20% Similarity=0.206 Sum_probs=117.1
Q ss_pred cCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCC-CCCh-hhcCCccCcE
Q 042164 6 RKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFS-SLPS-SLGRLINLQT 82 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~-~l~~l~~L~~ 82 (235)
++++++|++++|.++.+|..+ .+++|+.|++ .++.+..+++..+..+++|++|++++|.+. .++. .+..+++|++
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVL--SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEEC--TTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEEC--ccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 567777888887777777666 7777777777 434444443333456666666666666554 2332 2555666666
Q ss_pred EeccCcCCCCc----cccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecc
Q 042164 83 LCLDWCQLEDV----AAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDI 157 (235)
Q Consensus 83 L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 157 (235)
|++++|.+.++ ..++.+++|++|++++|.+..+ +..+..+++|++|++++|.+.+..+...+..+++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 66666655533 2345555555555555555432 333444555555555555432222222234444444444444
Q ss_pred ccccccccCC-------------------CCCccchhcccCCCccceeeecCCCCCCC-ccc-cccccceeEEEeccccc
Q 042164 158 SFSQWDKVEG-------------------GSNASLAELKGLSKLTTLNIQVPDAQILP-QEW-VFVELQSYRICIGNKWW 216 (235)
Q Consensus 158 n~~~~~~~~~-------------------~~~~~~~~~~~~~~L~~L~l~~n~~~~~p-~~~-~~~~L~~l~l~~~~~~~ 216 (235)
|.+.+..... ........+..+++|+.|++++|.+..++ ..+ .+++|+.|+++ ++...
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~ 513 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS-HNRLT 513 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCC
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC-CCccC
Confidence 4443221000 00011234566677777777777776543 333 66777777773 44442
Q ss_pred ccchhhhhhhhhccc
Q 042164 217 SSWSVKSGLSRLMKL 231 (235)
Q Consensus 217 ~~~~~~~~~~~l~~L 231 (235)
+ ..+.++.++++|
T Consensus 514 ~--~~~~~l~~l~~L 526 (606)
T 3t6q_A 514 S--SSIEALSHLKGI 526 (606)
T ss_dssp G--GGGGGGTTCCSC
T ss_pred c--CChhHhCccccc
Confidence 2 233556666555
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1e-21 Score=158.81 Aligned_cols=190 Identities=21% Similarity=0.246 Sum_probs=125.3
Q ss_pred cccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEE
Q 042164 4 TIRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTL 83 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 83 (235)
..++++++|++++|.++.++....+++|++|++ .++.+..++. +..+++|++|++++|.++.++. +..+++|+++
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L--~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISPLSNLVKLTNLYI--GTNKITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC--CSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hhcCCccEEEccCCccccchhhhcCCcCCEEEc--cCCcccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 346788899999998888877558888999998 4445555543 6788888888888888887765 6777788888
Q ss_pred eccCcC-CCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchh--------------------
Q 042164 84 CLDWCQ-LEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPN-------------------- 142 (235)
Q Consensus 84 ~l~~~~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------- 142 (235)
++++|. ...+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++.-
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCc
Confidence 887774 3344556666667777776666665543 5566666666666665 3333330
Q ss_pred hhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEE
Q 042164 143 VISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRIC 210 (235)
Q Consensus 143 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~ 210 (235)
.+..+++|++|++++|.++. ...+..+++|+.|++++|.+..++....+++|+.|+++
T Consensus 216 ~~~~~~~L~~L~l~~n~l~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 216 PVANMTRLNSLKIGNNKITD----------LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCC----------CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred hhhcCCcCCEEEccCCccCC----------CcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEcc
Confidence 03444455555555554441 12266677777777777777766543367777777774
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.9e-22 Score=158.21 Aligned_cols=210 Identities=21% Similarity=0.238 Sum_probs=166.3
Q ss_pred cEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEeccCc
Q 042164 10 IAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWC 88 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~ 88 (235)
..++..+..+..+|..+ .++++.|++ .++.+..++...|..+++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~l--s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp TEEECTTSCCSSCCSSS-CTTCCEEEC--TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEEecCCCccccCCCC-CCCccEEEC--CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 46778888888898876 468999999 556666677656789999999999999999865 46889999999999999
Q ss_pred CCCCc--cccCCCCCCcEEEecCCCCCCcch-hhccCCCCcEEcccCCcCCC-CCchhhhcCCCCCcEEEeccccccccc
Q 042164 89 QLEDV--AAIGQLKKLEILSFRGSNIKQLPL-EIGQLTRLQLLDLSNCWSLE-VIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 89 ~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
.+.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+ .+|.. +..+++|++|++++|.+++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~- 164 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI- 164 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE-
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC-
Confidence 99876 678999999999999999997765 58899999999999998433 24555 89999999999999999844
Q ss_pred cCCCCCccchhcccCCCcc----ceeeecCCCCCCCccc-cccccceeEEEecccccccchhhhhhhhhccccCC
Q 042164 165 VEGGSNASLAELKGLSKLT----TLNIQVPDAQILPQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
....+..+++|+ .|++++|.+..++... ...+|+.|+++ ++... .. .+..+.++++|+.|
T Consensus 165 -------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~-~n~l~-~~-~~~~~~~l~~L~~L 229 (276)
T 2z62_A 165 -------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD-TNQLK-SV-PDGIFDRLTSLQKI 229 (276)
T ss_dssp -------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECC-SSCCS-CC-CTTTTTTCCSCCEE
T ss_pred -------CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECC-CCcee-ec-CHhHhcccccccEE
Confidence 233444444555 8999999999887766 55689999995 45452 22 23456777777654
No 42
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=6.5e-22 Score=153.10 Aligned_cols=177 Identities=24% Similarity=0.345 Sum_probs=152.0
Q ss_pred CCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEec
Q 042164 7 KGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCL 85 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l 85 (235)
.+.++++++++.++.+|..+ .++++.|++ .++.+..++...|..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDL--QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEc--cCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678999999999999877 478999999 555566666666789999999999999999865 45789999999999
Q ss_pred cCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccc
Q 042164 86 DWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQW 162 (235)
Q Consensus 86 ~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 162 (235)
++|.+..+ ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999977 6778999999999999999988765 7889999999999998 667777668999999999999999984
Q ss_pred cccCCCCCccchhcccCCCccceeeecCCCCCC
Q 042164 163 DKVEGGSNASLAELKGLSKLTTLNIQVPDAQIL 195 (235)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 195 (235)
. ....+..+++|+.|++++|++...
T Consensus 170 ~--------~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 V--------PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp C--------CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred c--------CHHHHhCCCCCCEEEeeCCceeCC
Confidence 4 345678889999999999998744
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5.3e-24 Score=169.98 Aligned_cols=190 Identities=18% Similarity=0.169 Sum_probs=92.9
Q ss_pred cCCCcEEecCCCCCC-CCCCc---CCCCCccEEEeccCCCCCcccchhhhhCC-----CCCcEEeecCccCCCCC-hhhc
Q 042164 6 RKGPIAISLPQRDIQ-ELPER---LQCPNLQLFLLFREGNGPMQISDHFFEGT-----EELKVLDFTGIHFSSLP-SSLG 75 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~-~i~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~-~~l~ 75 (235)
++++++|++++|.++ .+|.. ..+++|+.|++ +. +.+...|.. +..+ ++|++|++++|.++.++ ..+.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L-s~-N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL-RN-VSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEE-ES-CBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEc-cC-CCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 445555666655554 34443 14555566665 22 223223322 2333 55566666655555543 4455
Q ss_pred CCccCcEEeccCcCCCCc----ccc--CCCCCCcEEEecCCCCCCcc---hh-hccCCCCcEEcccCCcCCCCCchhhhc
Q 042164 76 RLINLQTLCLDWCQLEDV----AAI--GQLKKLEILSFRGSNIKQLP---LE-IGQLTRLQLLDLSNCWSLEVIPPNVIS 145 (235)
Q Consensus 76 ~l~~L~~L~l~~~~l~~~----~~~--~~l~~L~~L~l~~~~~~~~~---~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~ 145 (235)
.+++|++|++++|.+.+. ..+ +.+++|++|++++|.++.++ .. +..+++|++|++++|.+.+..+...+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 555666666655554321 222 45555566666655555322 12 234555666666655533333222234
Q ss_pred CCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEE
Q 042164 146 KLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 146 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
.+++|++|++++|.++. ++..+. ++|+.|++++|.++.+|....+++|+.|++
T Consensus 251 ~l~~L~~L~Ls~N~l~~---------ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQ---------VPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303 (312)
T ss_dssp CCTTCCEEECTTSCCSS---------CCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEEC
T ss_pred hcCCCCEEECCCCccCh---------hhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEec
Confidence 45556666666555551 122222 455556666665555554225555555555
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=8.9e-23 Score=159.81 Aligned_cols=194 Identities=20% Similarity=0.300 Sum_probs=160.5
Q ss_pred CCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccC
Q 042164 8 GPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDW 87 (235)
Q Consensus 8 ~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 87 (235)
++..+++..+.+..+.....+++|+.|.+ .++.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l--~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIA--NNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEEC--TTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccccccccccceeeeee--CCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 44556666766665544448899999999 5555555554 688999999999999998875 688999999999999
Q ss_pred cCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccc
Q 042164 88 CQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 88 ~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
|.+.++ ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..+++..++.+++|++|++++|.+++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 172 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSL- 172 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC-
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCcc-
Confidence 999987 4578999999999999999977665 7899999999999998 6667776678999999999999999843
Q ss_pred cCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEeccccc
Q 042164 165 VEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNKWW 216 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~~ 216 (235)
....++.+++|+.|++++|.+..++... .+++|+.|++. ++.+.
T Consensus 173 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-~N~~~ 218 (272)
T 3rfs_A 173 -------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH-DNPWD 218 (272)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC-SSCBC
T ss_pred -------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc-CCCcc
Confidence 3445788999999999999999887764 78999999994 55553
No 45
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.9e-22 Score=178.39 Aligned_cols=213 Identities=14% Similarity=0.197 Sum_probs=127.9
Q ss_pred cCCCcEEecCCCCCCCCCC--cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCcc-Cc
Q 042164 6 RKGPIAISLPQRDIQELPE--RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLIN-LQ 81 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~--~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~-L~ 81 (235)
+++|++|++++|.+..+|. .+ .+++|+.|++ +.+ .+..+| .|..+++|+.|++++|.++.+|..+..+++ |+
T Consensus 547 l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~L-s~N-~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC-VHN-KVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622 (876)
T ss_dssp TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEEC-TTS-CCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCC
T ss_pred cCCccEEEeeCCcCCccCChhhhhcCCCCCEEEC-CCC-Ccccch--hhcCCCcceEEECcCCccccchHHHhhccccCC
Confidence 4577778888877777777 44 7777888887 333 333666 257777777777777777777766777777 77
Q ss_pred EEeccCcCCCCc-cccCCCC-------------------------------CCcEEEecCCCCCCcchhh-ccCCCCcEE
Q 042164 82 TLCLDWCQLEDV-AAIGQLK-------------------------------KLEILSFRGSNIKQLPLEI-GQLTRLQLL 128 (235)
Q Consensus 82 ~L~l~~~~l~~~-~~~~~l~-------------------------------~L~~L~l~~~~~~~~~~~~-~~l~~L~~L 128 (235)
+|++++|.+..+ ..+..+. +|+.|++++|.++.+|..+ ..+++|+.|
T Consensus 623 ~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 777777776655 3333222 3444444444444444432 244555555
Q ss_pred cccCCcCCCCCchhhhcCC-------CCCcEEEeccccccccccCCCCCccchhcc--cCCCccceeeecCCCCCCCccc
Q 042164 129 DLSNCWSLEVIPPNVISKL-------SRLEELYMDISFSQWDKVEGGSNASLAELK--GLSKLTTLNIQVPDAQILPQEW 199 (235)
Q Consensus 129 ~l~~~~~~~~~~~~~l~~~-------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~p~~~ 199 (235)
++++|. +..+|...+... ++|++|++++|.++ .++..+. .+++|+.|+|++|.+..+|..+
T Consensus 703 ~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l 772 (876)
T 4ecn_A 703 ILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---------SLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772 (876)
T ss_dssp ECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC---------CCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred ECCCCc-CCccChHHhccccccccccCCccEEECCCCCCc---------cchHHhhhccCCCcCEEEeCCCCCCccchhh
Confidence 555554 334444322211 14555555555554 2344554 6778888888888887777766
Q ss_pred -cccccceeEEEec-----ccccccchhhhhhhhhccccCC
Q 042164 200 -VFVELQSYRICIG-----NKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 200 -~~~~L~~l~l~~~-----~~~~~~~~~~~~~~~l~~L~~L 234 (235)
.+++|+.|+++.+ +...+. .+.++.++++|+.|
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~--ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQ--WPTGITTCPSLIQL 811 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCC--CCTTGGGCSSCCEE
T ss_pred hcCCCCCEEECCCCCCccccccccc--ChHHHhcCCCCCEE
Confidence 7778888877531 333222 23567777777655
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=8.6e-23 Score=177.52 Aligned_cols=194 Identities=17% Similarity=0.169 Sum_probs=117.9
Q ss_pred cCCCcEEecCCCCCC-CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCC-CcEEeecCccCCCCChhh--------
Q 042164 6 RKGPIAISLPQRDIQ-ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEE-LKVLDFTGIHFSSLPSSL-------- 74 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~-~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l-------- 74 (235)
+++|++|++++|.+. .+| .+ .+++|+.|++ .++.+..+|.. +..++. |++|++++|.++.+|..+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L--~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL--AYNQITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEEC--CSSEEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC--CCCccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 455666666666665 555 33 5555555555 33333344444 244444 555555555555444433
Q ss_pred ------------------c-------CCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchhhcc-C----
Q 042164 75 ------------------G-------RLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLEIGQ-L---- 122 (235)
Q Consensus 75 ------------------~-------~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~-l---- 122 (235)
. .+++|++|++++|.+..+ ..+..+++|++|++++|.++.+|..+.. .
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 3 344555555555555544 2233456666666666666655543222 1
Q ss_pred ---CCCcEEcccCCcCCCCCchhhhc--CCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeee------cCC
Q 042164 123 ---TRLQLLDLSNCWSLEVIPPNVIS--KLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQ------VPD 191 (235)
Q Consensus 123 ---~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~------~n~ 191 (235)
++|+.|++++|. +..+|.. +. .+++|++|++++|.++ .++..+..+++|+.|+++ +|.
T Consensus 485 ~~l~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N~l~---------~ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 485 KNTYLLTSIDLRFNK-LTKLSDD-FRATTLPYLVGIDLSYNSFS---------KFPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp TTGGGCCEEECCSSC-CCBCCGG-GSTTTCTTCCEEECCSSCCS---------SCCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred cccCCccEEECcCCc-CCccChh-hhhccCCCcCEEECCCCCCC---------CcChhhhcCCCCCEEECCCCcccccCc
Confidence 267777777776 4466665 44 7777888888887776 346677889999999995 455
Q ss_pred CC-CCCccc-cccccceeEEEecccc
Q 042164 192 AQ-ILPQEW-VFVELQSYRICIGNKW 215 (235)
Q Consensus 192 ~~-~~p~~~-~~~~L~~l~l~~~~~~ 215 (235)
+. .+|..+ .+++|+.|+++ ++..
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls-~N~l 578 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIG-SNDI 578 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECC-SSCC
T ss_pred ccccChHHHhcCCCCCEEECC-CCcC
Confidence 54 788877 89999999995 4444
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1e-22 Score=171.75 Aligned_cols=209 Identities=14% Similarity=0.170 Sum_probs=130.2
Q ss_pred cCCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh----------
Q 042164 6 RKGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS---------- 73 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 73 (235)
++++++|++++|.+..+++ .+ .+++|+.|++ +.| .+...++ +..+++|++|++++|.++.++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNL-SSN-VLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEEC-TTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEe-eCC-CCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcC
Confidence 4589999999999998764 34 8999999999 444 4443443 68889999999998887755421
Q ss_pred -------hcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCC-cchhhc-cCCCCcEEcccCCcCCCCCchh
Q 042164 74 -------LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ-LPLEIG-QLTRLQLLDLSNCWSLEVIPPN 142 (235)
Q Consensus 74 -------l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~ 142 (235)
...+++|++|++++|.+.++ ..++.+++|++|++++|.++. .|..+. .+++|+.|++++|. +..++.
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~- 186 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG- 186 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-
Confidence 01234455555555555544 344555556666666665553 233333 45566666666655 333333
Q ss_pred hhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEEEecccccccchh
Q 042164 143 VISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRICIGNKWWSSWSV 221 (235)
Q Consensus 143 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~~~~~~~ 221 (235)
...+++|+.|++++|.++ ..+..+..+++|+.|++++|.+..+|..+ .+++|+.|++ .++.+. +...
T Consensus 187 -~~~l~~L~~L~Ls~N~l~---------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l-~~N~l~-c~~~ 254 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLA---------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL-RGNGFH-CGTL 254 (487)
T ss_dssp -CCCCTTCCEEECCSSCCC---------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC-TTCCBC-HHHH
T ss_pred -cccCCCCCEEECCCCCCC---------CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc-CCCCCc-Ccch
Confidence 234556666666666655 23445667788888888888888777776 6678888887 355542 1223
Q ss_pred hhhhhhhcccc
Q 042164 222 KSGLSRLMKLQ 232 (235)
Q Consensus 222 ~~~~~~l~~L~ 232 (235)
+.++..+++|+
T Consensus 255 ~~~~~~l~~L~ 265 (487)
T 3oja_A 255 RDFFSKNQRVQ 265 (487)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHHhCCCCc
Confidence 35566555544
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=7.2e-23 Score=163.77 Aligned_cols=210 Identities=14% Similarity=0.185 Sum_probs=139.9
Q ss_pred cCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh----------
Q 042164 6 RKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS---------- 73 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 73 (235)
.+++++|++++|.++.+++. + .+++|+.|++ .++.+...++ +..+++|++|++++|.++.++..
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNL--SSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEEC--TTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEEC--CCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 45899999999999877643 3 8999999999 4444444443 67888999999998887654311
Q ss_pred -------hcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcc-hhh-ccCCCCcEEcccCCcCCCCCchh
Q 042164 74 -------LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLP-LEI-GQLTRLQLLDLSNCWSLEVIPPN 142 (235)
Q Consensus 74 -------l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~~~~~ 142 (235)
...+++|++|++++|.+..+ ..++.+++|++|++++|.++.++ ..+ ..+++|++|++++|. +..++.
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~- 186 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG- 186 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-
Confidence 11234566666666666655 34555666666666666666432 233 356667777777666 444443
Q ss_pred hhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEEEecccccccchh
Q 042164 143 VISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRICIGNKWWSSWSV 221 (235)
Q Consensus 143 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~~~~~~~ 221 (235)
...+++|++|++++|.++ ..+..+..+++|+.|++++|.++.+|..+ .+++|+.|++ .++.+. ....
T Consensus 187 -~~~l~~L~~L~Ls~N~l~---------~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l-~~N~~~-~~~~ 254 (317)
T 3o53_A 187 -QVVFAKLKTLDLSSNKLA---------FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL-RGNGFH-CGTL 254 (317)
T ss_dssp -CCCCTTCCEEECCSSCCC---------EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC-TTCCCB-HHHH
T ss_pred -ccccccCCEEECCCCcCC---------cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc-cCCCcc-CcCH
Confidence 234666777777777666 23445777888999999999988888877 7788888888 455553 1234
Q ss_pred hhhhhhhccccC
Q 042164 222 KSGLSRLMKLQG 233 (235)
Q Consensus 222 ~~~~~~l~~L~~ 233 (235)
+.++.++++|+.
T Consensus 255 ~~~~~~~~~L~~ 266 (317)
T 3o53_A 255 RDFFSKNQRVQT 266 (317)
T ss_dssp HHHHHTCHHHHH
T ss_pred HHHHhccccceE
Confidence 467777666654
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.9e-22 Score=155.49 Aligned_cols=176 Identities=19% Similarity=0.227 Sum_probs=152.9
Q ss_pred cccCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCc
Q 042164 4 TIRKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQ 81 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~ 81 (235)
..+++++.|++++|.++.++.. + .+++|+.|++ .++.+..++.. ..+++|++|++++|.++.+|..+..+++|+
T Consensus 28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALT 103 (290)
T ss_dssp CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEEC--TTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCC
T ss_pred CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEEC--CCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCC
Confidence 3457899999999999977543 4 8999999999 55556666653 689999999999999999998889999999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccc
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDIS 158 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 158 (235)
+|++++|.+..+ ..+..+++|++|++++|.++.++.. +..+++|+.|++++|. +..++..++..+++|++|++++|
T Consensus 104 ~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC
Confidence 999999999987 6789999999999999999988765 7889999999999998 67788877889999999999999
Q ss_pred cccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 159 FSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
.++ .++..+...++|+.+++++|++.
T Consensus 183 ~l~---------~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 183 SLY---------TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCC---------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCC---------ccChhhcccccCCeEEeCCCCcc
Confidence 998 34556666789999999999986
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.4e-21 Score=155.75 Aligned_cols=177 Identities=22% Similarity=0.320 Sum_probs=154.1
Q ss_pred cccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEE
Q 042164 4 TIRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTL 83 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 83 (235)
..++++++|++++|.+..++....+++|+.|++ .++.+..++. +..+++|++|++++|.++.++. +..+++|++|
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L--~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELEL--SGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEEC--CSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEc--cCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEE
Confidence 346899999999999999888559999999999 4555555653 6899999999999999998875 8999999999
Q ss_pred eccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccccc
Q 042164 84 CLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWD 163 (235)
Q Consensus 84 ~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 163 (235)
++++|.+..+..++.+++|++|++++|.++.++. +..+++|++|++++|. +..++. +..+++|++|++++|.+++.
T Consensus 135 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred ECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccCCccCcc
Confidence 9999999988669999999999999999998876 8899999999999998 666665 78999999999999999833
Q ss_pred ccCCCCCccchhcccCCCccceeeecCCCCCCCccc
Q 042164 164 KVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW 199 (235)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~ 199 (235)
..+..+++|+.|++++|++...|...
T Consensus 211 ----------~~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 211 ----------SPLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp ----------GGGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred ----------ccccCCCCCCEEEccCCeeecCCeee
Confidence 24788999999999999998766543
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.9e-22 Score=174.44 Aligned_cols=197 Identities=19% Similarity=0.160 Sum_probs=94.4
Q ss_pred CCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC---ChhhcCCccCcEE
Q 042164 7 KGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL---PSSLGRLINLQTL 83 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L 83 (235)
+++++|++++|.+..+|.. .+++|+.|++ ..+......+ +..+++|++|++++|.++.+ +..+..+++|++|
T Consensus 307 ~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l-~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQFPTL-DLPFLKSLTL-TMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCCSEEEEESCCCSSCCCC-CCSSCCEEEE-ESCSSCEECC---CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred ccCCEEEcccccCcccccC-CCCccceeec-cCCcCccchh---hccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 4566666666666666643 5555555555 3332322221 24455555555555555432 4445555555555
Q ss_pred eccCcCCCCc-cccCCCCCCcEEEecCCCCCCcch--hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccc
Q 042164 84 CLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPL--EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFS 160 (235)
Q Consensus 84 ~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 160 (235)
++++|.+..+ ..++.+++|++|++++|.+...+. .+..+++|++|++++|.+.+..+.. ++.+++|++|++++|.+
T Consensus 382 ~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp ECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEE
T ss_pred ECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcC
Confidence 5555554444 444455555555555555443322 3445555555555555432222222 44455555555555544
Q ss_pred cccccCC-----------------CCCccchhcccCCCccceeeecCCCCCC-Cccc-cccccceeEE
Q 042164 161 QWDKVEG-----------------GSNASLAELKGLSKLTTLNIQVPDAQIL-PQEW-VFVELQSYRI 209 (235)
Q Consensus 161 ~~~~~~~-----------------~~~~~~~~~~~~~~L~~L~l~~n~~~~~-p~~~-~~~~L~~l~l 209 (235)
++...+. .....+..+..+++|+.|++++|.+..+ |..+ .+++|+.|++
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 4210000 0001233445555555566655555543 3333 4555555555
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.2e-21 Score=162.93 Aligned_cols=186 Identities=20% Similarity=0.225 Sum_probs=119.2
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
.+++|++|++++|.+..++....+++|+.|++ . ++.+...++ +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l-~-~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 249 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISVLAKLTNLESLIA-T-NNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD 249 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC-C-SSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred cCCCCCEEECcCCcCCCChhhccCCCCCEEEe-c-CCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEE
Confidence 34677788888887777665557777888887 3 333333333 456777777777777776654 466777777777
Q ss_pred ccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccc
Q 042164 85 LDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 85 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
+++|.+.++..+..+++|++|++++|.++.++. +..+++|+.|++++|. +..+++ +..+++|++|++++|.+++.
T Consensus 250 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~- 324 (466)
T 1o6v_A 250 LANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDI- 324 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCC-
T ss_pred CCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCc-
Confidence 777777766446677777777777777766554 5667777777777776 444443 56667777777777766622
Q ss_pred cCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEE
Q 042164 165 VEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
..+..+++|+.|++++|.+..++....+++|+.|++
T Consensus 325 ---------~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 325 ---------SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA 360 (466)
T ss_dssp ---------GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred ---------hhhccCccCCEeECCCCccCCchhhccCCCCCEEeC
Confidence 114455666666666666655543225556666665
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=2e-21 Score=170.07 Aligned_cols=202 Identities=22% Similarity=0.253 Sum_probs=110.8
Q ss_pred cCCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCC---------------------------CCcccchhhhhCCCC
Q 042164 6 RKGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGN---------------------------GPMQISDHFFEGTEE 56 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~---------------------------~~~~~~~~~~~~~~~ 56 (235)
++++++|++++|.+..+++.. .+++|+.|++ +.+. .+..++...|..+++
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC-TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEEC-CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 467778888888777665432 6677777776 3321 112222233455666
Q ss_pred CcEEeecCccCCC-CC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCC---CcchhhccCCCCcEEc
Q 042164 57 LKVLDFTGIHFSS-LP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIK---QLPLEIGQLTRLQLLD 129 (235)
Q Consensus 57 L~~L~l~~~~~~~-~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~ 129 (235)
|++|++++|.++. +| ..+..+++|+++++++|.+..+ ..+..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 6666666666653 43 4456666666666666665543 44555566666666665553 3455566677777777
Q ss_pred ccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--ccccccee
Q 042164 130 LSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSY 207 (235)
Q Consensus 130 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l 207 (235)
+++|. +..+++..+..+++|++|++++|.+++.............++.+++|+.|++++|.+..+|... .+++|+.|
T Consensus 487 Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 487 LSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 77776 4455555566777777777777766543111000001112344445555555555554444432 44444444
Q ss_pred EE
Q 042164 208 RI 209 (235)
Q Consensus 208 ~l 209 (235)
++
T Consensus 566 ~L 567 (680)
T 1ziw_A 566 DL 567 (680)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1e-22 Score=162.93 Aligned_cols=197 Identities=15% Similarity=0.064 Sum_probs=150.5
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccch----------------hhhhCCCCCcEEeecCccCC
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISD----------------HFFEGTEELKVLDFTGIHFS 68 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~L~~L~l~~~~~~ 68 (235)
.+++|++|++++|.+..+++...+++|+.|++ +. +.+..++. -....+++|++|++++|.++
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L-s~-n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLDLESLSTLRTLDL-NN-NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEEETTCTTCCEEEC-CS-SEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred CCCcCCEEECCCCcCCcchhhhhcCCCCEEEC-cC-CccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence 35677888888887765555446777777777 33 33222210 00134678899999999998
Q ss_pred CCC-hhhcCCccCcEEeccCcCCCCc--ccc-CCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhh
Q 042164 69 SLP-SSLGRLINLQTLCLDWCQLEDV--AAI-GQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVI 144 (235)
Q Consensus 69 ~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~-~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 144 (235)
.++ ..+..+++|++|++++|.+..+ ..+ ..+++|++|++++|.++.++.. ..+++|++|++++|. +..+++. +
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~-~ 210 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPE-F 210 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSC-CCEECGG-G
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCc-CCcchhh-h
Confidence 864 4678899999999999999976 444 4789999999999999977543 358999999999998 6677777 8
Q ss_pred cCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC--CCCccc-cccccceeEEEecccc
Q 042164 145 SKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ--ILPQEW-VFVELQSYRICIGNKW 215 (235)
Q Consensus 145 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~p~~~-~~~~L~~l~l~~~~~~ 215 (235)
..+++|++|++++|.++ .++..+..+++|+.|++++|++. .+|.++ .+++|+.+++..++.+
T Consensus 211 ~~l~~L~~L~L~~N~l~---------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV---------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp GGGTTCSEEECTTSCCC---------EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccCcccEEECcCCccc---------chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 89999999999999998 34566788999999999999998 555555 7888888887534333
No 55
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=1.7e-21 Score=153.91 Aligned_cols=173 Identities=24% Similarity=0.340 Sum_probs=138.1
Q ss_pred cCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEec
Q 042164 6 RKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCL 85 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 85 (235)
+++++.|++++|.+..++....+++|+.|++ ..+.+..++. +..+++|++|++++|.++.++. +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L--~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFL--NGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEEC--CSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEc--cCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 5678889999988888876558888999998 4445555555 5788889999999888887654 788889999999
Q ss_pred cCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccccccc
Q 042164 86 DWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKV 165 (235)
Q Consensus 86 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 165 (235)
++|.+.++..+..+++|++|++++|.++.+ ..+..+++|++|++++|. +..+++ +..+++|++|++++|.++.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~--- 192 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD--- 192 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB---
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC---
Confidence 999888887788888899999999888877 467888889999999887 555554 7888889999999888872
Q ss_pred CCCCCccchhcccCCCccceeeecCCCCCCCc
Q 042164 166 EGGSNASLAELKGLSKLTTLNIQVPDAQILPQ 197 (235)
Q Consensus 166 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~ 197 (235)
...+..+++|+.|++++|.+...|.
T Consensus 193 -------l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 193 -------LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred -------ChhhccCCCCCEEECcCCcccCCcc
Confidence 2347788889999999888765554
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2.7e-21 Score=162.35 Aligned_cols=195 Identities=21% Similarity=0.266 Sum_probs=87.4
Q ss_pred cCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEec
Q 042164 6 RKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCL 85 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 85 (235)
++++++|++++|.++.+++...+++|+.|++ .++.+..++. +..+++|++|++++|.++.+++ +..+++|++|++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l--~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILM--NNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEEC--CSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEE
T ss_pred hcCCCEEECCCCccCCchhhhccccCCEEEC--CCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEEC
Confidence 4455555555555555544335555555555 2233333333 3455555555555555555443 455555555555
Q ss_pred cCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccccccc
Q 042164 86 DWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKV 165 (235)
Q Consensus 86 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 165 (235)
++|.+..+..++.+++|++|+++ +.+..++ .+..+++|++|++++|. ...++. +..+++|++|++++|.+.+...
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCccCCChhhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCccccccc
Confidence 55554433222222222222221 1111111 13344444445554444 222321 3444444444444444432200
Q ss_pred CC------------CCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEE
Q 042164 166 EG------------GSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRIC 210 (235)
Q Consensus 166 ~~------------~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~ 210 (235)
-+ ........+..+++|+.|++++|.+..++....+++|+.|+++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence 00 0000123455566666666666666655553366666666663
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2e-21 Score=170.17 Aligned_cols=198 Identities=18% Similarity=0.245 Sum_probs=103.9
Q ss_pred CCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCcEE
Q 042164 7 KGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQTL 83 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L 83 (235)
++++.|++++|.+..+++ .+ .+++|+.|++ +.+.....++...|..+++|++|++++|.+..+ +..+..+++|++|
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDL-GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEEC-CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeC-CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 356677777777765533 33 7888888888 555444456555567777777777777766543 2334445555555
Q ss_pred eccCcCCCCc----cccCCCCCCcEEEecCCCCCCcchh-hccC--------------------------------CCCc
Q 042164 84 CLDWCQLEDV----AAIGQLKKLEILSFRGSNIKQLPLE-IGQL--------------------------------TRLQ 126 (235)
Q Consensus 84 ~l~~~~l~~~----~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l--------------------------------~~L~ 126 (235)
++++|.+..+ ..++.+++|++|++++|.++.++.. +..+ ++|+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 5555444311 3344444455555555444433322 4444 4455
Q ss_pred EEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc---cccc
Q 042164 127 LLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW---VFVE 203 (235)
Q Consensus 127 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~---~~~~ 203 (235)
.|++++|. +..+|...+..+++|++|++++|.++.. ....+..+++|+.|++++|.++.++... .+++
T Consensus 540 ~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 540 ILNLESNG-FDEIPVEVFKDLFELKIIDLGLNNLNTL--------PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610 (680)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT
T ss_pred EEECCCCC-CCCCCHHHcccccCcceeECCCCCCCcC--------CHhHhCCCCCCCEEECCCCcCCccChhHhcccccc
Confidence 55555544 3344443344555555555555554422 1223444555555555555555544432 3455
Q ss_pred cceeEEEecccc
Q 042164 204 LQSYRICIGNKW 215 (235)
Q Consensus 204 L~~l~l~~~~~~ 215 (235)
|+.+++ .+|.|
T Consensus 611 L~~l~l-~~N~~ 621 (680)
T 1ziw_A 611 LTELDM-RFNPF 621 (680)
T ss_dssp CSEEEC-TTCCC
T ss_pred cCEEEc-cCCCc
Confidence 555555 34443
No 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=5.5e-22 Score=156.76 Aligned_cols=184 Identities=20% Similarity=0.254 Sum_probs=154.7
Q ss_pred cEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcC
Q 042164 10 IAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQ 89 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 89 (235)
..+.+....+..+.....+++|+.|++ .++.+..++. +..+++|++|++++|.++.+++ +..+++|++|++++|.
T Consensus 27 ~~~~l~~~~~~~~~~~~~l~~L~~L~l--~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVTQNELNSIDQIIA--NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHTTCSCTTSEECHHHHHTCCEEEC--TTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHhcCCCcccccchhhcCcccEEEc--cCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 344555666655544447899999999 5556666654 6889999999999999999877 8999999999999999
Q ss_pred CCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCC
Q 042164 90 LEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGS 169 (235)
Q Consensus 90 l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 169 (235)
+..++.++.+++|++|++++|.++.++ .+..+++|++|++++|. +..++ . +..+++|++|++++|.+++.
T Consensus 102 l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~~~------ 171 (291)
T 1h6t_A 102 VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISDI------ 171 (291)
T ss_dssp CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCCCC------
T ss_pred CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCccccc------
Confidence 999988999999999999999999874 57889999999999998 55563 3 89999999999999999833
Q ss_pred CccchhcccCCCccceeeecCCCCCCCccccccccceeEEEec
Q 042164 170 NASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIG 212 (235)
Q Consensus 170 ~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~~ 212 (235)
. .+..+++|+.|++++|.++.++....+++|+.|++..+
T Consensus 172 ---~-~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 172 ---V-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ---G-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred ---h-hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 2 28889999999999999999886448999999999643
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.9e-21 Score=161.68 Aligned_cols=193 Identities=15% Similarity=0.134 Sum_probs=137.1
Q ss_pred cCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEec
Q 042164 6 RKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCL 85 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 85 (235)
++++++|++++|.++.+|....+++|+.|++ .++.+..++ ++.+++|++|++++|.++.++ +..+++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L--s~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLIC--TSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEEC--CSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEc--cCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 5788899999998888875448889999998 444454454 578888889999888888775 778888888888
Q ss_pred cCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccccccc
Q 042164 86 DWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKV 165 (235)
Q Consensus 86 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 165 (235)
++|.+.+++ ++.+++|++|++++|.++.++ ++.+++|++|++++|...+.++ ++.+++|++|++++|.+++...
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l 187 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDV 187 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCC
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceecc
Confidence 888888764 778888888888888887664 5667777777777775455552 4566666666666666654321
Q ss_pred CC------------CCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEEecccc
Q 042164 166 EG------------GSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKW 215 (235)
Q Consensus 166 ~~------------~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~~~~~ 215 (235)
.. .... . .++.+++|+.|++++|.++.+| ...+++|+.|+++ ++.+
T Consensus 188 ~~l~~L~~L~l~~N~l~~-~-~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~-~N~l 245 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITK-L-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCS-VNPL 245 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-C-CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCC
T ss_pred ccCCCCCEEECcCCcCCe-e-ccccCCCCCEEECcCCcccccC-ccccCCCCEEEee-CCcC
Confidence 11 0001 1 3566788888888888888777 2377888888884 4444
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=7.3e-22 Score=157.57 Aligned_cols=212 Identities=17% Similarity=0.189 Sum_probs=168.8
Q ss_pred CCcEEecCCCCCC--CCCCcC--------CCCCccEEEeccCCCCCcccchhhh-hCCCCCcEEeecCccCCCCChhhcC
Q 042164 8 GPIAISLPQRDIQ--ELPERL--------QCPNLQLFLLFREGNGPMQISDHFF-EGTEELKVLDFTGIHFSSLPSSLGR 76 (235)
Q Consensus 8 ~l~~L~l~~~~l~--~i~~~~--------~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~l~~ 76 (235)
.++.|++++|.+. .+|... .+++|+.|++ +.+.....+|..+| ..+++|++|++++|.++.+|..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL-ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEE-EEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEc-cCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHH
Confidence 3778899999885 455543 4999999999 66665556777644 7899999999999999988877777
Q ss_pred C-----ccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCC---cchhh--ccCCCCcEEcccCCcCCC---CCch
Q 042164 77 L-----INLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ---LPLEI--GQLTRLQLLDLSNCWSLE---VIPP 141 (235)
Q Consensus 77 l-----~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~---~~~~~--~~l~~L~~L~l~~~~~~~---~~~~ 141 (235)
+ ++|++|++++|.+.++ ..++.+++|++|++++|.+.. ++..+ ..+++|++|++++|. +. .++.
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHH
Confidence 6 9999999999999977 689999999999999999763 34444 789999999999998 44 3444
Q ss_pred hhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEEecccccccchh
Q 042164 142 NVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSV 221 (235)
Q Consensus 142 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~~~~~~~~~~~ 221 (235)
..+..+++|++|++++|.+++. .....+..+++|+.|++++|.++.+|..+. ++|+.|+++ ++...+. +
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls-~N~l~~~-p- 290 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDA-------AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLS-YNRLDRN-P- 290 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSS-------CCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECC-SSCCCSC-C-
T ss_pred HHHhcCCCCCEEECCCCcCCcc-------cchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECC-CCCCCCC-h-
Confidence 5567889999999999999844 112455567999999999999999998766 899999995 5555322 2
Q ss_pred hhhhhhhccccCC
Q 042164 222 KSGLSRLMKLQGL 234 (235)
Q Consensus 222 ~~~~~~l~~L~~L 234 (235)
. +..+++|+.|
T Consensus 291 -~-~~~l~~L~~L 301 (312)
T 1wwl_A 291 -S-PDELPQVGNL 301 (312)
T ss_dssp -C-TTTSCEEEEE
T ss_pred -h-HhhCCCCCEE
Confidence 3 6777777655
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.2e-22 Score=169.82 Aligned_cols=191 Identities=15% Similarity=0.067 Sum_probs=148.7
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchh----------------hhhCCCCCcEEeecCccCC
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDH----------------FFEGTEELKVLDFTGIHFS 68 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------~~~~~~~L~~L~l~~~~~~ 68 (235)
.+++|+.|++++|.+..+++...+++|+.|++ .++.+..++.. ....+++|+.|++++|.++
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L--s~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~ 133 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLDLESLSTLRTLDL--NNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEECTTCTTCCEEEC--CSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCC
T ss_pred CCCCCCEEEeeCCCCCCCcccccCCCCCEEEe--cCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCC
Confidence 45788888888888876555447778888777 33333322210 0134678899999999998
Q ss_pred CC-ChhhcCCccCcEEeccCcCCCCc--cccC-CCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhh
Q 042164 69 SL-PSSLGRLINLQTLCLDWCQLEDV--AAIG-QLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVI 144 (235)
Q Consensus 69 ~~-~~~l~~l~~L~~L~l~~~~l~~~--~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 144 (235)
.+ |..+..+++|++|++++|.+.++ ..+. .+++|++|++++|.++.++. ...+++|+.|++++|. +..+++. +
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~-~ 210 (487)
T 3oja_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPE-F 210 (487)
T ss_dssp SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGG-G
T ss_pred CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHh-H
Confidence 75 55788899999999999999975 5554 78999999999999997754 3468999999999998 6667776 8
Q ss_pred cCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC--CCCccc-cccccceeEE
Q 042164 145 SKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ--ILPQEW-VFVELQSYRI 209 (235)
Q Consensus 145 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~p~~~-~~~~L~~l~l 209 (235)
..+++|+.|++++|.+++ ++..+..+++|+.|++++|++. .+|.++ .++.++.+++
T Consensus 211 ~~l~~L~~L~Ls~N~l~~---------lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVL---------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGTTCSEEECTTSCCCE---------ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCccEEEecCCcCcc---------cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 899999999999999983 4556788899999999999998 666655 6677776665
No 62
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=9e-22 Score=175.28 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=135.8
Q ss_pred ccCCCcEEecCCCCCCC------------------CCCcC---CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeec
Q 042164 5 IRKGPIAISLPQRDIQE------------------LPERL---QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFT 63 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~------------------i~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 63 (235)
.+++|+.|++++|.++. +|+.+ .+++|+.|++ +.|...+.+|.. |..+++|+.|+++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L-s~N~l~~~iP~~-l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL-YNCPNMTQLPDF-LYDLPELQSLNIA 523 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE-ESCTTCCSCCGG-GGGCSSCCEEECT
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC-cCCCCCccChHH-HhCCCCCCEEECc
Confidence 45678888888888876 77765 4788888888 666666667755 4777888888888
Q ss_pred Ccc-CCC--CChhhcCCc-------cCcEEeccCcCCCCc-c--ccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcc
Q 042164 64 GIH-FSS--LPSSLGRLI-------NLQTLCLDWCQLEDV-A--AIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDL 130 (235)
Q Consensus 64 ~~~-~~~--~~~~l~~l~-------~L~~L~l~~~~l~~~-~--~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 130 (235)
+|. ++. +|..+..++ +|++|++++|.+..+ . .++.+++|++|++++|.++.+| .++.+++|+.|++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence 776 664 665555444 777777777777766 3 5777777777777777777776 6777777777777
Q ss_pred cCCcCCCCCchhhhcCCCC-CcEEEeccccccccccC--------------------CCCCccchhcc--cCCCccceee
Q 042164 131 SNCWSLEVIPPNVISKLSR-LEELYMDISFSQWDKVE--------------------GGSNASLAELK--GLSKLTTLNI 187 (235)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~--------------------~~~~~~~~~~~--~~~~L~~L~l 187 (235)
++|. +..+|.. +..+++ |++|++++|.++..... +..+.....+. ..++|+.|++
T Consensus 603 s~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQ-IEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSC-CSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCc-cccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 7777 4466665 666776 77777777776633100 00001111111 2347788888
Q ss_pred ecCCCCCCCccc--cccccceeEEE
Q 042164 188 QVPDAQILPQEW--VFVELQSYRIC 210 (235)
Q Consensus 188 ~~n~~~~~p~~~--~~~~L~~l~l~ 210 (235)
++|.+..+|..+ .+++|+.|+++
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILS 705 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECC
T ss_pred cCCcCCccCHHHHccCCCCCEEECC
Confidence 888888777766 56788888884
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=164.79 Aligned_cols=122 Identities=16% Similarity=0.279 Sum_probs=66.6
Q ss_pred CCCcEEecCCCCCCCCCC-cC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 7 KGPIAISLPQRDIQELPE-RL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
+++++|++++|.+..+++ .+ .+++|++|++ .++.+..+++..|..+++|++|++++|.++.+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILII--SHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEEC--CSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEec--CCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 556666666666665543 22 5666666666 33333334333346666666666666666655544 566666666
Q ss_pred ccCcCCCCc---cccCCCCCCcEEEecCCCCCCcchhhccCCCC--cEEcccCCc
Q 042164 85 LDWCQLEDV---AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRL--QLLDLSNCW 134 (235)
Q Consensus 85 l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~ 134 (235)
+++|.+.++ ..++.+++|++|++++|.++. ..+..+++| ++|++++|.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 666665542 455666666666666665543 123333344 444444443
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=2.5e-21 Score=167.38 Aligned_cols=191 Identities=17% Similarity=0.235 Sum_probs=142.2
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCcEEeccC
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQTLCLDW 87 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~ 87 (235)
-+.++++++.++.+|..+ .++++.|++ .++.+..++...|..+++|++|++++|.++.+ |..|..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDL--SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEEC--CCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 357888888888888766 478888888 55555666665578888888888888888875 55678888888888888
Q ss_pred cCCCCc--cccCCCCCCcEEEecCCCCCCcc-hhhccCCCCcEEcccCCcCCC-CCchhhhcCCCCCcEEEecccccccc
Q 042164 88 CQLEDV--AAIGQLKKLEILSFRGSNIKQLP-LEIGQLTRLQLLDLSNCWSLE-VIPPNVISKLSRLEELYMDISFSQWD 163 (235)
Q Consensus 88 ~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~ 163 (235)
|.+..+ ..++.+++|++|++++|.++.++ ..++++++|++|++++|.+.+ .+|.. ++.+++|++|++++|.+++.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 888866 67888888888888888888665 458888888888888887443 45665 78888888888888888743
Q ss_pred ccCCCCCccchhcccCCC----ccceeeecCCCCCCCccc-cccccceeEEEe
Q 042164 164 KVEGGSNASLAELKGLSK----LTTLNIQVPDAQILPQEW-VFVELQSYRICI 211 (235)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~----L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~ 211 (235)
.+..++.+++ ++.+++++|.+..++... ...+|+.|++..
T Consensus 169 --------~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 169 --------TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp --------CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred --------ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 2233333333 446888888888777665 444788888753
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=172.71 Aligned_cols=133 Identities=26% Similarity=0.364 Sum_probs=110.0
Q ss_pred ccCCCcEEecCCCCCCCC-CCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQEL-PERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~ 81 (235)
.++++++|++++|.++.+ +..+ .+++|+.|++ +.+.....+++..|..+++|++|++++|.++.+ |..+..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdL-s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLEL-GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEE-CTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeC-CCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 467899999999999866 4444 8999999999 666677777666679999999999999999874 77889999999
Q ss_pred EEeccCcCCCC-c-c--ccCCCCCCcEEEecCCCCCCc--chhhccCCCCcEEcccCCcCCCC
Q 042164 82 TLCLDWCQLED-V-A--AIGQLKKLEILSFRGSNIKQL--PLEIGQLTRLQLLDLSNCWSLEV 138 (235)
Q Consensus 82 ~L~l~~~~l~~-~-~--~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~ 138 (235)
+|++++|.+.+ + . .++.+++|++|++++|.++.+ +..++++++|++|++++|.+.+.
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 99999999885 2 3 388999999999999998854 34688999999999999874443
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=165.58 Aligned_cols=156 Identities=24% Similarity=0.280 Sum_probs=126.7
Q ss_pred ccCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~ 81 (235)
..+++++|++++|.++.+++. + .+++|+.|++ .++.+..+++..|..+++|++|++++|.++.++ ..+..+++|+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEEC--CCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 456899999999999877653 3 8999999999 455566677666789999999999999998865 6789999999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCC--cchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCC----cEE
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ--LPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRL----EEL 153 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L----~~L 153 (235)
+|++++|.+..+ ..++.+++|++|++++|.++. +|..++++++|++|++++|. +..+++..++.+++| ..+
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhc
Confidence 999999999887 358899999999999999884 68889999999999999998 444444336666666 677
Q ss_pred Eecccccccc
Q 042164 154 YMDISFSQWD 163 (235)
Q Consensus 154 ~l~~n~~~~~ 163 (235)
++++|.++..
T Consensus 183 ~l~~n~l~~~ 192 (570)
T 2z63_A 183 DLSLNPMNFI 192 (570)
T ss_dssp ECTTCCCCEE
T ss_pred ccCCCCceec
Confidence 7777766543
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.5e-21 Score=149.86 Aligned_cols=196 Identities=18% Similarity=0.218 Sum_probs=157.7
Q ss_pred CCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCcc-CCCCCh-hhcCCccCcEEeccC-cCCCCc-
Q 042164 18 DIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIH-FSSLPS-SLGRLINLQTLCLDW-CQLEDV- 93 (235)
Q Consensus 18 ~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~l~~l~~L~~L~l~~-~~l~~~- 93 (235)
.++.+|. . .++++.|++ .++.+..++...|..+++|++|++++|. ++.+++ .+..+++|++|++++ |.++.+
T Consensus 22 ~l~~ip~-~-~~~l~~L~l--~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-L-PPSTQTLKL--IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-C-CTTCCEEEE--ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-C-CCcccEEEE--eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3788888 3 568999999 5566677777668999999999999997 888764 689999999999998 899977
Q ss_pred -cccCCCCCCcEEEecCCCCCCcchhhccCCCCc---EEcccCC-cCCCCCchhhhcCCCCCc-EEEeccccccccccCC
Q 042164 94 -AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQ---LLDLSNC-WSLEVIPPNVISKLSRLE-ELYMDISFSQWDKVEG 167 (235)
Q Consensus 94 -~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~ 167 (235)
..+..+++|++|++++|.++.+|. +..+++|+ +|++++| . ++.++...+..+++|+ ++++++|.++..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~-l~~i~~~~~~~l~~L~~~L~l~~n~l~~i---- 171 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPY-MTSIPVNAFQGLCNETLTLKLYNNGFTSV---- 171 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTT-CCEECTTTTTTTBSSEEEEECCSCCCCEE----
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcc-hhhcCcccccchhcceeEEEcCCCCCccc----
Confidence 578899999999999999998887 78888888 9999999 6 7778777789999999 999999998833
Q ss_pred CCCccchhcccCCCccceeeecCC-CCCCCccc--cc-cccceeEEEecccccccchhhhhhhhhccc
Q 042164 168 GSNASLAELKGLSKLTTLNIQVPD-AQILPQEW--VF-VELQSYRICIGNKWWSSWSVKSGLSRLMKL 231 (235)
Q Consensus 168 ~~~~~~~~~~~~~~L~~L~l~~n~-~~~~p~~~--~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L 231 (235)
....+.. ++|+.|++++|. ++.+|... .+ ++|+.|+++ ++... ..+ +..+.+++.|
T Consensus 172 ----~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~-~N~l~-~l~-~~~~~~L~~L 231 (239)
T 2xwt_C 172 ----QGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS-QTSVT-ALP-SKGLEHLKEL 231 (239)
T ss_dssp ----CTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT-TCCCC-CCC-CTTCTTCSEE
T ss_pred ----CHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC-CCccc-cCC-hhHhccCcee
Confidence 1223344 789999999995 99887654 66 899999994 55552 222 2345555544
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.6e-21 Score=164.49 Aligned_cols=195 Identities=19% Similarity=0.238 Sum_probs=143.3
Q ss_pred ccCCCcEEecCCCCCCCCC-CcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh-hcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELP-ERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS-LGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~-~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~ 81 (235)
.++++++|++++|.++.++ ..+ .+++|++|++ ..+.+..+++..|..+++|++|++++|.++.+++. +..+++|+
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL--KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEEC--CCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 3467888888888888664 334 7888888888 44455555555568888888888888888876654 88888888
Q ss_pred EEeccCcCCCCc---cccCCCCCCcEEEecCCC-CCCcc-hhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEec
Q 042164 82 TLCLDWCQLEDV---AAIGQLKKLEILSFRGSN-IKQLP-LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMD 156 (235)
Q Consensus 82 ~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 156 (235)
+|++++|.+..+ ..++.+++|++|++++|. +..++ ..+..+++|++|++++|.+.+..+.. ++.+++|++|+++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecc
Confidence 888888888743 567888888888888887 55665 35788888888888888855555554 7788888888888
Q ss_pred cccccccccCCCCCccchhcccCCCccceeeecCCCCCCC---ccc--cccccceeEEE
Q 042164 157 ISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILP---QEW--VFVELQSYRIC 210 (235)
Q Consensus 157 ~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p---~~~--~~~~L~~l~l~ 210 (235)
.|.+... ....+..+++|+.|++++|.+..++ ... .+++|+.|++.
T Consensus 181 ~n~~~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 181 LSESAFL--------LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp CSBSTTH--------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred cCccccc--------chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 8876522 1222356788999999999887642 222 56777777774
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=4.3e-21 Score=164.67 Aligned_cols=57 Identities=19% Similarity=0.068 Sum_probs=33.0
Q ss_pred ccCCCccceeeecCCCCC-CCccc-cccccceeEEEecccccccchhhhhhhhhccccCC
Q 042164 177 KGLSKLTTLNIQVPDAQI-LPQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 177 ~~~~~L~~L~l~~n~~~~-~p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
+.+++|+.|++++|.+.. +|..+ .+++|+.|++. ++...+....+..+.++++|+.|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ-RNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC-SSCCCBTTHHHHTTTTCTTCCEE
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECC-CCCcCCcccchhhhcCCCCCCEE
Confidence 456677777777777764 55554 66777777773 34442222223445566655544
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2.2e-21 Score=165.86 Aligned_cols=194 Identities=18% Similarity=0.204 Sum_probs=165.1
Q ss_pred cEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEeccCc
Q 042164 10 IAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWC 88 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~ 88 (235)
...+.+++.++++|..+ .++++.|++ +. +.+..++...|..+++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 8 ~~c~~~~~~l~~ip~~~-~~~L~~L~L-s~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 8 GVCDGRSRSFTSIPSGL-TAAMKSLDL-SF-NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SEEECTTSCCSSCCSCC-CTTCCEEEC-CS-SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ceEECCCCccccccccC-CCCccEEEC-cC-CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 34688889999999876 489999999 44 4455555555789999999999999999854 67899999999999999
Q ss_pred CCCCc--cccCCCCCCcEEEecCCCCCC--cchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccc
Q 042164 89 QLEDV--AAIGQLKKLEILSFRGSNIKQ--LPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 89 ~l~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
.+.++ ..++.+++|++|++++|.++. .|..++.+++|++|++++|...+.++...+..+++|++|++++|.+++.
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~- 163 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY- 163 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-
Confidence 99987 559999999999999999984 4667899999999999999867778765689999999999999999844
Q ss_pred cCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEecccc
Q 042164 165 VEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNKW 215 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~ 215 (235)
.+..++.+++|+.|++++|.+..+|... .+++|+.|+++. +..
T Consensus 164 -------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l 208 (549)
T 2z81_A 164 -------QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD-TNL 208 (549)
T ss_dssp -------CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES-CBC
T ss_pred -------ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC-Ccc
Confidence 5677888999999999999998888776 689999999964 443
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=160.23 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=52.2
Q ss_pred ccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCC---cchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcE
Q 042164 78 INLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ---LPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEE 152 (235)
Q Consensus 78 ~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 152 (235)
++|++|++++|.+.+. ..++.+++|++|++++|.++. +|..+..+++|++|++++|.+.+.+|...+..+++|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 3344444444443331 333444444444444444442 12234444444444444444222243333334444444
Q ss_pred EEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-cccccceeEE
Q 042164 153 LYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVELQSYRI 209 (235)
Q Consensus 153 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l 209 (235)
|++++|.+++. .+..+. ++|+.|++++|.++.+|..+ .+++|+.|++
T Consensus 404 L~Ls~N~l~~~--------~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 404 LNMSSNILTDT--------IFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNV 451 (520)
T ss_dssp EECCSSCCCGG--------GGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred EECcCCCCCcc--------hhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEEC
Confidence 44444444321 111110 45555555555555555544 5555555555
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=4.5e-20 Score=154.44 Aligned_cols=179 Identities=16% Similarity=0.109 Sum_probs=122.1
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
.++++++|++++|.++.+| ...+++|+.|++ +. +.+..++ ++.+++|++|++++|.++.++ +..+++|++|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~L-s~-N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD-LSQNTNLTYLAC-DS-NKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC-CTTCTTCSEEEC-CS-SCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ccCCCCEEEccCCcCCeEc-cccCCCCCEEEC-cC-CCCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 4567888888888887775 337778888888 33 3344443 467777777777777777664 66677777777
Q ss_pred ccCcCCCCcc---------------------ccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhh
Q 042164 85 LDWCQLEDVA---------------------AIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNV 143 (235)
Q Consensus 85 l~~~~l~~~~---------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 143 (235)
+++|.+++++ .++.+++|++|++++|.++.+| +..+++|+.|++++|. +..++
T Consensus 134 l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~--- 207 (457)
T 3bz5_A 134 CARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD--- 207 (457)
T ss_dssp CTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC---
T ss_pred CCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCeec---
Confidence 7777665441 2344556666666666666654 5566777777777776 33332
Q ss_pred hcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEE
Q 042164 144 ISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 144 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
++.+++|++|++++|.+++. + ++.+++|+.|++++|.++.+|.. .+++|+.+++
T Consensus 208 l~~l~~L~~L~Ls~N~l~~i---------p--~~~l~~L~~L~l~~N~l~~~~~~-~l~~L~~L~l 261 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTEI---------D--VTPLTQLTYFDCSVNPLTELDVS-TLSKLTTLHC 261 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC---------C--CTTCTTCSEEECCSSCCSCCCCT-TCTTCCEEEC
T ss_pred cccCCCCCEEECcCCccccc---------C--ccccCCCCEEEeeCCcCCCcCHH-HCCCCCEEec
Confidence 56777788888888877722 2 77889999999999999987743 5666665554
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=2.6e-20 Score=159.85 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=55.0
Q ss_pred CCCCCcEEEecCCCCCC-cchhhccCCCCcEEcccCCcCCCCCch--hhhcCCCCCcEEEeccccccccccCCCC-----
Q 042164 98 QLKKLEILSFRGSNIKQ-LPLEIGQLTRLQLLDLSNCWSLEVIPP--NVISKLSRLEELYMDISFSQWDKVEGGS----- 169 (235)
Q Consensus 98 ~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~----- 169 (235)
.+++|++|++++|.++. .|..+..+++|++|++++|. +..++. ..++.+++|++|++++|.+++....+..
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 44556666666666553 44455566666666666665 333221 1245555666666666655531011000
Q ss_pred --------Ccc-chhcccC-CCccceeeecCCCCCCCccc-cccccceeEE
Q 042164 170 --------NAS-LAELKGL-SKLTTLNIQVPDAQILPQEW-VFVELQSYRI 209 (235)
Q Consensus 170 --------~~~-~~~~~~~-~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l 209 (235)
... ...+..+ ++|+.|++++|.++.+|..+ .+++|+.|++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNV 480 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEEC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEEC
Confidence 000 0111112 45666666666666666555 5566666666
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=163.64 Aligned_cols=198 Identities=19% Similarity=0.205 Sum_probs=132.8
Q ss_pred CCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccc--hhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 7 KGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQIS--DHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
++++.|++++|.+........+++|+.|++ +.+ .+...+ ...+..+++|++|++++|.++.+++.+..+++|++|+
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l-~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDL-SRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402 (570)
T ss_dssp SSCCEEEEESCBSCCBCCCCBCTTCCEEEC-CSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred cccCEEeCcCCccccccccccCCCCCEEeC-cCC-ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEE
Confidence 344444444444332222235666777777 333 333221 2224677778888888777776665577778888888
Q ss_pred ccCcCCCCc---cccCCCCCCcEEEecCCCCCC-cchhhccCCCCcEEcccCCcCC-CCCchhhhcCCCCCcEEEecccc
Q 042164 85 LDWCQLEDV---AAIGQLKKLEILSFRGSNIKQ-LPLEIGQLTRLQLLDLSNCWSL-EVIPPNVISKLSRLEELYMDISF 159 (235)
Q Consensus 85 l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~l~~n~ 159 (235)
+++|.+... ..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+. +.+|.. +..+++|++|++++|.
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ 481 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc
Confidence 888776654 356777888888888887774 4555777888888888888743 345544 7778888888888887
Q ss_pred ccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--cccccceeEEEeccccc
Q 042164 160 SQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VFVELQSYRICIGNKWW 216 (235)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~~ 216 (235)
+++. .+..+..+++|+.|++++|.++.+|... .+++|+.+++. ++.+.
T Consensus 482 l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N~~~ 531 (570)
T 2z63_A 482 LEQL--------SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH-TNPWD 531 (570)
T ss_dssp CCEE--------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC-SSCBC
T ss_pred cccC--------ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec-CCccc
Confidence 7733 3567778888999999998888776653 77888888884 55553
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=151.68 Aligned_cols=195 Identities=17% Similarity=0.124 Sum_probs=113.3
Q ss_pred CCCcEEecCCCCCCC-CCCc---CCCCCccEEEeccCCCCCcccc---hhhhhCCCCCcEEeecCccCCCCC-hhhcCCc
Q 042164 7 KGPIAISLPQRDIQE-LPER---LQCPNLQLFLLFREGNGPMQIS---DHFFEGTEELKVLDFTGIHFSSLP-SSLGRLI 78 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~-i~~~---~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~ 78 (235)
+++++|++++|.+.. +|.. ..+++|++|++ +.+......+ ...+..+++|++|++++|.++.++ ..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~L-s~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRL-RNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEE-ESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEe-ecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 346777777777653 3333 34667777777 4444333222 111235667777777777776543 4566677
Q ss_pred cCcEEeccCcCCCC---c---cccCCCCCCcEEEecCCCCCCcchh----hccCCCCcEEcccCCcCCCCCchhhhcCC-
Q 042164 79 NLQTLCLDWCQLED---V---AAIGQLKKLEILSFRGSNIKQLPLE----IGQLTRLQLLDLSNCWSLEVIPPNVISKL- 147 (235)
Q Consensus 79 ~L~~L~l~~~~l~~---~---~~~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~~~- 147 (235)
+|++|++++|.+.+ + ..++.+++|++|++++|.++.++.. +..+++|++|++++|.+.+..|.. +..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 77777777776543 2 2234666777777777776654432 356677777777777644433443 3343
Q ss_pred --CCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEEecccc
Q 042164 148 --SRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKW 215 (235)
Q Consensus 148 --~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~~~~~ 215 (235)
++|++|++++|.++.. +..+ .++|+.|++++|.++.+|....+++|+.|++ .+|.+
T Consensus 249 ~~~~L~~L~Ls~N~l~~l---------p~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L-~~N~l 306 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQV---------PKGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTL-DGNPF 306 (310)
T ss_dssp CCTTCCCEECCSSCCCSC---------CSCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEEC-SSTTT
T ss_pred CcCcCCEEECCCCCCCch---------hhhh--cCCCCEEECCCCcCCCCchhhhCCCccEEEC-cCCCC
Confidence 5677777777766622 2222 1567777777777776655336667777766 34443
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=2.2e-20 Score=160.93 Aligned_cols=174 Identities=24% Similarity=0.335 Sum_probs=142.7
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
.+++|+.|++++|.+..++....+++|+.|++ ..+.+..++. +..+++|+.|+|++|.++.++ .+..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L--s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL--NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEEC--TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEe--eCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 35788899999999988876558999999999 4445555555 688999999999999988876 578899999999
Q ss_pred ccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccc
Q 042164 85 LDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 85 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
+++|.+..+..+..+++|+.|+++.|.++.+ ..+..+++|+.|++++|. +..+++ +..+++|+.|++++|.+++
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~-- 189 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD-- 189 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCC--
Confidence 9999988887788899999999999998877 567888999999999998 444544 7888999999999998872
Q ss_pred cCCCCCccchhcccCCCccceeeecCCCCCCCc
Q 042164 165 VEGGSNASLAELKGLSKLTTLNIQVPDAQILPQ 197 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~ 197 (235)
+..+..+++|+.|+|++|.+...|.
T Consensus 190 --------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 190 --------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp --------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred --------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 3467888999999999998875554
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=5.7e-20 Score=142.17 Aligned_cols=172 Identities=23% Similarity=0.367 Sum_probs=145.5
Q ss_pred CCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEE
Q 042164 29 PNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEIL 105 (235)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L 105 (235)
...+.+++ .+..+..+|..+ ...++.|++++|.++.++ ..+..+++|++|++++|.+.++ ..+..+++|++|
T Consensus 14 ~~~~~l~~--~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDC--QGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEEC--TTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCeEEec--CCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 45677888 666677777643 368999999999999865 4689999999999999999987 568899999999
Q ss_pred EecCCCCCCcch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccc
Q 042164 106 SFRGSNIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTT 184 (235)
Q Consensus 106 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~ 184 (235)
++++|.++.++. .+..+++|++|++++|. +..++...+..+++|++|++++|.+++. ....++.+++|+.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~ 159 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSI--------PAGAFDKLTNLQT 159 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCE
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCcc--------CHHHcCcCcCCCE
Confidence 999999998765 47899999999999998 6677777688999999999999999843 3346888999999
Q ss_pred eeeecCCCCCCCccc--cccccceeEEEecccc
Q 042164 185 LNIQVPDAQILPQEW--VFVELQSYRICIGNKW 215 (235)
Q Consensus 185 L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~ 215 (235)
|++++|.++.+|... .+++|+.|++ .+|.+
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l-~~N~~ 191 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITL-FGNQF 191 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEEC-CSCCB
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEe-eCCce
Confidence 999999999888744 7899999999 46665
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.8e-20 Score=139.12 Aligned_cols=172 Identities=19% Similarity=0.283 Sum_probs=145.6
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCcEEeccC
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTLCLDW 87 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~ 87 (235)
-+.++++++.+..+|... .++++.|++ .++.+..++...|..+++|++|++++|.++.+++ .+..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~~~p~~~-~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI-PAQTTYLDL--ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccCCCCCC-CCCCcEEEc--CCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 357888999998888766 679999999 5555667777777899999999999999998765 468899999999999
Q ss_pred cCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccc
Q 042164 88 CQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 88 ~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
|.+..+ ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..+++|+++++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeec--
Confidence 999987 4578999999999999999987765 7889999999999998 566776668899999999999997762
Q ss_pred cCCCCCccchhcccCCCccceeeecCCCC-CCCccc
Q 042164 165 VEGGSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEW 199 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~ 199 (235)
.+++|+.|+++.|.+. .+|.++
T Consensus 163 -------------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 163 -------------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp -------------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred -------------CCCCHHHHHHHHHhCCceeeccC
Confidence 3578999999999887 788755
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=167.31 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=57.6
Q ss_pred cCCCcEEecCCCCC-CCC-CCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC-CChh--hcCCcc
Q 042164 6 RKGPIAISLPQRDI-QEL-PERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS-LPSS--LGRLIN 79 (235)
Q Consensus 6 ~~~l~~L~l~~~~l-~~i-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~--l~~l~~ 79 (235)
+++|++|++++|.. ..+ |..+ .+++|++|++ ..+.+..+++..|..+++|++|++++|.++. ++.. +..+++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L--s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL--GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC--TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC--CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 45666666666633 344 2333 5666666666 3333333333334566666666666666654 3332 556666
Q ss_pred CcEEeccCcCCCCc---cccCCCCCCcEEEecCCCCC
Q 042164 80 LQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSNIK 113 (235)
Q Consensus 80 L~~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~ 113 (235)
|++|++++|.+.++ ..++.+++|++|++++|.++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 66666666665543 34556666666666666554
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=4.3e-21 Score=165.36 Aligned_cols=188 Identities=20% Similarity=0.255 Sum_probs=158.0
Q ss_pred CCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccC
Q 042164 8 GPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDW 87 (235)
Q Consensus 8 ~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 87 (235)
.+..+.+..+.+..+.....+++|+.|++ .++.+..++. +..+++|+.|+|++|.++.+++ +..+++|++|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l--~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIA--NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBC--TTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEEC--cCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 34456666777766655557899999999 5566666664 6899999999999999998876 89999999999999
Q ss_pred cCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCC
Q 042164 88 CQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEG 167 (235)
Q Consensus 88 ~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 167 (235)
|.+..++.+..+++|+.|+++.|.++.++ .+..+++|+.|++++|. +..++ . +..+++|+.|++++|.+.+.
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N~l~~~---- 168 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQISDI---- 168 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-G-GGSCTTCSEEECCSSCCCCC----
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-h-hcccCCCCEEECcCCcCCCc----
Confidence 99999988999999999999999999874 58899999999999998 55553 3 89999999999999999833
Q ss_pred CCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEEecccc
Q 042164 168 GSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKW 215 (235)
Q Consensus 168 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~~~~~ 215 (235)
.. +..+++|+.|+|++|.+..+|....+++|+.|++. ++..
T Consensus 169 -----~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~-~N~l 209 (605)
T 1m9s_A 169 -----VP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF-SQEC 209 (605)
T ss_dssp -----GG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC-SEEE
T ss_pred -----hh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEcc-CCcC
Confidence 22 88899999999999999988754489999999995 4433
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.1e-19 Score=155.19 Aligned_cols=190 Identities=20% Similarity=0.235 Sum_probs=153.3
Q ss_pred CCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccC
Q 042164 8 GPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDW 87 (235)
Q Consensus 8 ~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 87 (235)
+++.|++++|.++.+|..+ +++|+.|++ .++.+..+| ..+++|++|++++|.++.+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~L--s~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEI--TQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEEC--CSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEEC--cCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 7999999999999998876 589999999 555556777 357999999999999999887 554 999999999
Q ss_pred cCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCC
Q 042164 88 CQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEG 167 (235)
Q Consensus 88 ~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 167 (235)
|.+++++. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. +. ++|+.|++++|.++..
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~l---- 195 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESL---- 195 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSC----
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCch----
Confidence 99998855 78999999999999998886 67899999999998 555776 44 8999999999999833
Q ss_pred CCCccchhccc-----CCCccceeeecCCCCCCCccc-cccccceeEEEecccccccchhhhhhhhhcc
Q 042164 168 GSNASLAELKG-----LSKLTTLNIQVPDAQILPQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRLMK 230 (235)
Q Consensus 168 ~~~~~~~~~~~-----~~~L~~L~l~~n~~~~~p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~ 230 (235)
+. +.. .+.|+.|++++|.++.+|..+ .+++|+.|++ .+|.+.+ ..+..+..+..
T Consensus 196 -----p~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L-~~N~l~~--~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 -----PA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL-EDNPLSS--RIRESLSQQTA 255 (571)
T ss_dssp -----CC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC-CSSSCCH--HHHHHHHHHHH
T ss_pred -----hh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe-eCCcCCC--cCHHHHHHhhc
Confidence 22 222 122399999999999999977 8899999999 4666633 23355555443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=152.88 Aligned_cols=214 Identities=13% Similarity=0.070 Sum_probs=155.6
Q ss_pred CCcEEecCCCCCC-----CCCCcCCCCCccEEEeccCCCCCcccchhhh-hCCCCCcEEeecCccCCC-CC----hhhcC
Q 042164 8 GPIAISLPQRDIQ-----ELPERLQCPNLQLFLLFREGNGPMQISDHFF-EGTEELKVLDFTGIHFSS-LP----SSLGR 76 (235)
Q Consensus 8 ~l~~L~l~~~~l~-----~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~----~~l~~ 76 (235)
.++.+.+.++.+. .+.....+++|+.|++ +.+......+..++ ..+++|++|++++|.++. .+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTL-EDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEE-ESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEe-eCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3566777776664 1222225677999999 66665555665533 789999999999999985 33 23457
Q ss_pred CccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCC---cchh--hccCCCCcEEcccCCcCCCCCch---hhhcC
Q 042164 77 LINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ---LPLE--IGQLTRLQLLDLSNCWSLEVIPP---NVISK 146 (235)
Q Consensus 77 l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~---~~~~--~~~l~~L~~L~l~~~~~~~~~~~---~~l~~ 146 (235)
+++|++|++++|.+..+ ..++.+++|++|++++|.+.. ++.. ++.+++|++|++++|. +..++. ..++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence 89999999999999876 678899999999999998763 3322 4688999999999998 554443 23578
Q ss_pred CCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEEecccccccchhhhhhh
Q 042164 147 LSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNKWWSSWSVKSGLS 226 (235)
Q Consensus 147 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 226 (235)
+++|++|++++|.+++. .+.....+..+++|++|++++|.++.+|..+ +++|+.|+++ .|... ..+. +.
T Consensus 223 l~~L~~L~Ls~N~l~~~-----~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls-~N~l~-~~~~---~~ 291 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRAT-----VNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLS-SNRLN-RAPQ---PD 291 (310)
T ss_dssp TCCCSSEECTTSCCCCC-----CCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECC-SCCCC-SCCC---TT
T ss_pred CCCCCEEECCCCCCCcc-----chhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECC-CCcCC-CCch---hh
Confidence 89999999999999833 0111223333479999999999999999876 4899999995 55443 2222 45
Q ss_pred hhccccCC
Q 042164 227 RLMKLQGL 234 (235)
Q Consensus 227 ~l~~L~~L 234 (235)
.+++|+.|
T Consensus 292 ~l~~L~~L 299 (310)
T 4glp_A 292 ELPEVDNL 299 (310)
T ss_dssp SCCCCSCE
T ss_pred hCCCccEE
Confidence 56666654
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.83 E-value=9.2e-21 Score=147.63 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=129.4
Q ss_pred cCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEec
Q 042164 6 RKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCL 85 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l 85 (235)
+.++..++++++.++.++....+++|+.|++ .++.+..++. +..+++|++|++++|.++.+++ +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l--~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNG--DNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEEC--TTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEEC--cCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 3456667778888877774447888888888 4455555662 5778888888888888888776 788888888888
Q ss_pred cCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccccccc
Q 042164 86 DWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKV 165 (235)
Q Consensus 86 ~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 165 (235)
++|.+.+++.+.. ++|++|++++|.++.++ .+..+++|++|++++|. +..++. +..+++|++|++++|.+++
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~--- 164 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN--- 164 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB---
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc---
Confidence 8888887744444 78888888888888765 47788888888888887 555552 7788888888888888871
Q ss_pred CCCCCccchhcccCCCccceeeecCCCCCCCc
Q 042164 166 EGGSNASLAELKGLSKLTTLNIQVPDAQILPQ 197 (235)
Q Consensus 166 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~ 197 (235)
...+..+++|+.|++++|.+...|.
T Consensus 165 -------~~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 -------TGGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -------CTTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -------hHHhccCCCCCEEeCCCCcccCCcc
Confidence 2566778888888888888765554
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1.2e-19 Score=157.24 Aligned_cols=188 Identities=20% Similarity=0.230 Sum_probs=138.4
Q ss_pred cEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCcEEeccCc
Q 042164 10 IAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTLCLDWC 88 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~ 88 (235)
++++.++.++++||..+ .++++.|++ ..+.+..+++..|..+++|++|++++|.++.+++ .|..+++|++|++++|
T Consensus 34 ~~~~c~~~~l~~vP~~l-p~~~~~LdL--s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL-PFSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCSSCCSSS-CTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCCCC-CcCCCEEEe--eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 45677777888888776 467889999 5566777777667889999999999999888754 5888999999999999
Q ss_pred CCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCC-CCchhhhcCCCCCcEEEeccccccccc
Q 042164 89 QLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLE-VIPPNVISKLSRLEELYMDISFSQWDK 164 (235)
Q Consensus 89 ~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~ 164 (235)
+++.+ ..|+.+++|++|++++|.++.++.. ++++++|++|++++|.+.+ ..|. .++.+++|++|++++|.+++.
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~- 188 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSI- 188 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEE-
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCcccccc-
Confidence 98877 5688899999999999998877654 8888999999999987433 2344 378888999999999988744
Q ss_pred cCCCCCccchhcccCCC----ccceeeecCCCCCCCccc-cccccceeEE
Q 042164 165 VEGGSNASLAELKGLSK----LTTLNIQVPDAQILPQEW-VFVELQSYRI 209 (235)
Q Consensus 165 ~~~~~~~~~~~~~~~~~----L~~L~l~~n~~~~~p~~~-~~~~L~~l~l 209 (235)
....+..+++ ...++++.|.+..++... ....+..+++
T Consensus 189 -------~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l 231 (635)
T 4g8a_A 189 -------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 231 (635)
T ss_dssp -------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred -------ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence 2223333222 235667777777665543 3333444444
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=4e-19 Score=153.43 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=28.8
Q ss_pred CCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC
Q 042164 7 KGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP 71 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 71 (235)
++++.|++++|.++.+|. .+++|+.|++ .++.+..+|. .+++|++|++++|.++.+|
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~L--s~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEV--SGNQLTSLPV----LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEE--CSCCCSCCCC----CCTTCCEEEECSCCCCCCC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEc--CCCcCCcCCC----CCCCCCEEECcCCcCCCCC
Confidence 455556666665555555 3555555555 3333333442 3445555555555554443
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=4.6e-20 Score=149.42 Aligned_cols=198 Identities=14% Similarity=0.108 Sum_probs=134.3
Q ss_pred ccCCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcE-EeecCccCCCCC-hhhcCCccC
Q 042164 5 IRKGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKV-LDFTGIHFSSLP-SSLGRLINL 80 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~-~~l~~l~~L 80 (235)
.++++++|++++|.|+.||+.. ++++|+.|++ +.|.....++...|..++++.+ +.+.+|.++.++ ..|..+++|
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L-s~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI-SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEE-ECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEEC-cCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 4567888888888888887653 7888888888 6655556677777777877665 555667788764 567888888
Q ss_pred cEEeccCcCCCCc--cccCCCCCCcEEEecC-CCCCCcchh-hccCC-CCcEEcccCCcCCCCCchhhhcCCCCCcEEEe
Q 042164 81 QTLCLDWCQLEDV--AAIGQLKKLEILSFRG-SNIKQLPLE-IGQLT-RLQLLDLSNCWSLEVIPPNVISKLSRLEELYM 155 (235)
Q Consensus 81 ~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~-~~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 155 (235)
+++++++|.+..+ ..+.....+..+++.. +.+..++.. +..+. .++.|++++|+ +..++.. .....+++++++
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~f~~~~L~~l~l 184 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-AFNGTQLDELNL 184 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-SSTTEEEEEEEC
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-hccccchhHHhh
Confidence 8888888888766 3333445566677755 356655543 44443 57777777776 5566665 334556777777
Q ss_pred cc-ccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEEEeccc
Q 042164 156 DI-SFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRICIGNK 214 (235)
Q Consensus 156 ~~-n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l~~~~~ 214 (235)
.+ |.++.. ....++.+++|+.|++++|.++.+|.. .+.+|++|++...+.
T Consensus 185 ~~~n~l~~i--------~~~~f~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 185 SDNNNLEEL--------PNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARSTYN 235 (350)
T ss_dssp TTCTTCCCC--------CTTTTTTEECCSEEECTTSCCCCCCSS-SCTTCCEEECTTCTT
T ss_pred ccCCcccCC--------CHHHhccCcccchhhcCCCCcCccChh-hhccchHhhhccCCC
Confidence 54 455522 223567778888888888888888775 467777777644433
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=5.2e-19 Score=152.68 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=52.5
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
.+++|++|++++|.++.+|. .+++|+.|++ .++.+..++. .+.+|+.|++++|.++.+|.. +++|++|+
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~L--s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~ 147 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV--LPPGLLELSI--FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELS 147 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC--CCTTCCEEEE--CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred cCCCCCEEEcCCCcCCcCCC--CCCCCCEEEC--cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEE
Confidence 45788889999888888877 6788888888 4445554553 456666677776666666542 35666666
Q ss_pred ccCcCCCCc
Q 042164 85 LDWCQLEDV 93 (235)
Q Consensus 85 l~~~~l~~~ 93 (235)
+++|.+.++
T Consensus 148 Ls~N~l~~l 156 (622)
T 3g06_A 148 VSDNQLASL 156 (622)
T ss_dssp CCSSCCSCC
T ss_pred CcCCcCCCc
Confidence 666665544
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.1e-19 Score=133.95 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=113.5
Q ss_pred hCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCC-cchhhccCCCCcEEcc
Q 042164 52 EGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQ-LPLEIGQLTRLQLLDL 130 (235)
Q Consensus 52 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l 130 (235)
..++.|+.|++++|.++.+| .+..+++|++|++++|.+..+..+..+++|++|++++|.++. .+..+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45677888888888888777 577888888888888877777777888888888888888874 5666778888888888
Q ss_pred cCCcCCCCCchhhhcCCCCCcEEEecccc-ccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEE
Q 042164 131 SNCWSLEVIPPNVISKLSRLEELYMDISF-SQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
++|.+.+..+.. ++.+++|++|++++|. ++ ....+..+++|+.|++++|.+..++....+++|+.|++
T Consensus 120 s~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~----------~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 120 SHSAHDDSILTK-INTLPKVNSIDLSYNGAIT----------DIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188 (197)
T ss_dssp CSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC----------CCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEE
T ss_pred cCCccCcHhHHH-HhhCCCCCEEEccCCCCcc----------ccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEe
Confidence 888744444444 7788888888888887 55 12357778888888888888887774337888888888
Q ss_pred Eeccc
Q 042164 210 CIGNK 214 (235)
Q Consensus 210 ~~~~~ 214 (235)
. ++.
T Consensus 189 ~-~N~ 192 (197)
T 4ezg_A 189 F-SQT 192 (197)
T ss_dssp C-BC-
T ss_pred e-Ccc
Confidence 3 443
No 89
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=145.38 Aligned_cols=173 Identities=20% Similarity=0.229 Sum_probs=137.4
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhh-CCCCCcEEeecCccCCCCC-hhhcCCccCcEEecc
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFE-GTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLD 86 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~ 86 (235)
-+.++++++.++.+|..+ .+.++.|++ .++.+..++...|. .+.+|++|++++|.++.++ ..|..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~L--s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDL--SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEEC--CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEEC--CCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 357899999999888765 456888999 55566667766666 8899999999999998865 468889999999999
Q ss_pred CcCCCCc--cccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCCCCchhhh---cCCCCCcEEEeccccc
Q 042164 87 WCQLEDV--AAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPPNVI---SKLSRLEELYMDISFS 160 (235)
Q Consensus 87 ~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~ 160 (235)
+|.+..+ ..+..+++|++|++++|.++.+ +..+..+++|++|++++|. +..++..++ ..+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9998877 5688899999999999999866 4568889999999999998 667777655 5688999999999988
Q ss_pred cccccCCCCCccchhcccCCC--ccceeeecCCCC
Q 042164 161 QWDKVEGGSNASLAELKGLSK--LTTLNIQVPDAQ 193 (235)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~ 193 (235)
+.. ....+..++. ++.|++++|++.
T Consensus 176 ~~l--------~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKL--------PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCC--------CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred Ccc--------CHHHhhhccHhhcceEEecCCCcc
Confidence 843 3345666666 478899998875
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.5e-18 Score=132.46 Aligned_cols=149 Identities=24% Similarity=0.300 Sum_probs=106.3
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCcEEeccC
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTLCLDW 87 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~ 87 (235)
-+.++++++.+..+|..+ .++|+.|++ .++.+..++...|..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEc--CCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777777777665 477778887 4444444544446777788888888887777654 356777888888888
Q ss_pred cCCCCc--cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 88 CQLEDV--AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 88 ~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
|.+..+ ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++...+..+++|+.+++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777766 44667777777888777777777777777777777777776 55565555677777777777777766
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1e-18 Score=132.53 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=117.7
Q ss_pred cEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCcEEeccCc
Q 042164 10 IAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQTLCLDWC 88 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~ 88 (235)
+.++++++.++.+|..+ .++++.|++ .++.+..++...|..+++|++|++++|.++.+ |..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l--~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRL--EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEEC--CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEEC--CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56888888888888766 378888888 55566667766678888899999998888875 667888888888888888
Q ss_pred CCCCc--cccCCCCCCcEEEecCCCCCCcc-hhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccc
Q 042164 89 QLEDV--AAIGQLKKLEILSFRGSNIKQLP-LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQW 162 (235)
Q Consensus 89 ~l~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 162 (235)
.+..+ ..+..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++...+..+++|+.+++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88877 44678888888888888888664 457788888888888887 555665557788888888888888763
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=2.1e-19 Score=139.95 Aligned_cols=166 Identities=20% Similarity=0.107 Sum_probs=139.3
Q ss_pred CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEE
Q 042164 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILS 106 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~ 106 (235)
.+.++..+.+ ..+.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+.++..++.+++|++|+
T Consensus 17 ~l~~l~~l~l--~~~~i~~~~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNL--GKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHH--TCSCTTSEEC--HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEE
T ss_pred HHHHHHHHHh--cCCCcccccc--hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEE
Confidence 4556667777 4555555553 578999999999999999887 6889999999999999999985599999999999
Q ss_pred ecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCcccee
Q 042164 107 FRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLN 186 (235)
Q Consensus 107 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 186 (235)
+++|.++.++.... ++|++|++++|. +..++. +..+++|++|++++|.+++. ..++.+++|+.|+
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~~----------~~l~~l~~L~~L~ 156 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKSI----------VMLGFLSKLEVLD 156 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCBC----------GGGGGCTTCCEEE
T ss_pred CCCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCCC----------hHHccCCCCCEEE
Confidence 99999998876433 899999999998 555653 89999999999999999832 4688899999999
Q ss_pred eecCCCCCCCccccccccceeEEEec
Q 042164 187 IQVPDAQILPQEWVFVELQSYRICIG 212 (235)
Q Consensus 187 l~~n~~~~~p~~~~~~~L~~l~l~~~ 212 (235)
+++|.+..++....+++|+.|+++.+
T Consensus 157 L~~N~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 157 LHGNEITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred CCCCcCcchHHhccCCCCCEEeCCCC
Confidence 99999998843338899999999643
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=6.6e-20 Score=149.15 Aligned_cols=201 Identities=13% Similarity=0.176 Sum_probs=142.5
Q ss_pred cCCCcEEecCCCCCCCCCC-----cC-CCC-CccEEEeccCCCCCcccchhhhhCC-----CCCcEEeecCccCCCCChh
Q 042164 6 RKGPIAISLPQRDIQELPE-----RL-QCP-NLQLFLLFREGNGPMQISDHFFEGT-----EELKVLDFTGIHFSSLPSS 73 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~-----~~-~l~-~L~~L~l~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~ 73 (235)
.+++++|++++|.++.++. .+ .++ +|++|++ +. +.+.......+..+ +.|++|++++|.++..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-s~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNL-SG-NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEEC-CS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEEC-cC-CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 4569999999999987663 33 677 8999999 44 45544433334443 8999999999999865432
Q ss_pred -----hcCC-ccCcEEeccCcCCCCc------cccCC-CCCCcEEEecCCCCC-----CcchhhccCC-CCcEEcccCCc
Q 042164 74 -----LGRL-INLQTLCLDWCQLEDV------AAIGQ-LKKLEILSFRGSNIK-----QLPLEIGQLT-RLQLLDLSNCW 134 (235)
Q Consensus 74 -----l~~l-~~L~~L~l~~~~l~~~------~~~~~-l~~L~~L~l~~~~~~-----~~~~~~~~l~-~L~~L~l~~~~ 134 (235)
+..+ ++|++|++++|.+... ..+.. ..+|++|++++|.++ .++..+..++ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 5555 8999999999998854 23444 369999999999888 3444556665 99999999998
Q ss_pred CCCCCchh---hhcCC-CCCcEEEeccccccccccCCCCCccchhccc-CCCccceeeecCCCCCCCccc------cccc
Q 042164 135 SLEVIPPN---VISKL-SRLEELYMDISFSQWDKVEGGSNASLAELKG-LSKLTTLNIQVPDAQILPQEW------VFVE 203 (235)
Q Consensus 135 ~~~~~~~~---~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~p~~~------~~~~ 203 (235)
+.+..+.. .+..+ ++|++|++++|.+... ........+.. .++|++|++++|.+...+... .+++
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLK----SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 43333322 24455 5899999999998843 11123445555 458999999999988655411 5678
Q ss_pred cceeEEEec
Q 042164 204 LQSYRICIG 212 (235)
Q Consensus 204 L~~l~l~~~ 212 (235)
|+.|+++.+
T Consensus 255 L~~L~L~~n 263 (362)
T 3goz_A 255 LQTVYLDYD 263 (362)
T ss_dssp CSEEEEEHH
T ss_pred ccEEEeccC
Confidence 999998644
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=7.1e-19 Score=152.33 Aligned_cols=156 Identities=24% Similarity=0.263 Sum_probs=129.5
Q ss_pred ccCCCcEEecCCCCCCCCCCc-C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCc
Q 042164 5 IRKGPIAISLPQRDIQELPER-L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQ 81 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 81 (235)
.++++++|+|++|.|+.+++. + .+++|+.|++ .++.+..+++..|..+++|++|+|++|.++.+|+ .|..+++|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L--s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC--CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 456899999999999998765 3 8999999999 6667777888888999999999999999999874 589999999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCCCCCC--cchhhccCCCCcEEcccCCcCCCCCchhhhcCCCC----CcEE
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQ--LPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSR----LEEL 153 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~----L~~L 153 (235)
+|++++|.+.++ ..++.+++|++|++++|.++. .|..++.+++|++|++++|. +..+++..+..+.+ ...+
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhh
Confidence 999999999988 568999999999999999984 56778899999999999998 44444333443332 4468
Q ss_pred Eecccccccc
Q 042164 154 YMDISFSQWD 163 (235)
Q Consensus 154 ~l~~n~~~~~ 163 (235)
+++.|.+...
T Consensus 207 ~ls~n~l~~i 216 (635)
T 4g8a_A 207 DLSLNPMNFI 216 (635)
T ss_dssp ECTTCCCCEE
T ss_pred hcccCccccc
Confidence 8888877643
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=8.7e-20 Score=146.72 Aligned_cols=194 Identities=16% Similarity=0.213 Sum_probs=134.5
Q ss_pred CCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC-CChhhcCCccCcEEe
Q 042164 7 KGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS-LPSSLGRLINLQTLC 84 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~ 84 (235)
++++.++++++.+...+... .+++|+.|++ +.+..........+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDL-SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEEC-TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEc-cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 67788888888877554444 7888888888 54443333122345778888888888888774 566777888888888
Q ss_pred ccCc-CCCC--c-cccCCCCCCcEEEecCC-CCCC--cchhhccCC-CCcEEcccCCc--CC-CCCchhhhcCCCCCcEE
Q 042164 85 LDWC-QLED--V-AAIGQLKKLEILSFRGS-NIKQ--LPLEIGQLT-RLQLLDLSNCW--SL-EVIPPNVISKLSRLEEL 153 (235)
Q Consensus 85 l~~~-~l~~--~-~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~l~~~~~L~~L 153 (235)
+++| .+++ + ..+..+++|++|++++| .++. ++..+..++ +|++|++++|. +. +.++. .+..+++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEE
Confidence 8888 5663 4 44677888888888888 7773 566677888 88888888884 22 33343 36778888888
Q ss_pred Eecccc-ccccccCCCCCccchhcccCCCccceeeecCC-CC-CCCccc-cccccceeEEE
Q 042164 154 YMDISF-SQWDKVEGGSNASLAELKGLSKLTTLNIQVPD-AQ-ILPQEW-VFVELQSYRIC 210 (235)
Q Consensus 154 ~l~~n~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~-~~p~~~-~~~~L~~l~l~ 210 (235)
++++|. ++.. .+..+..+++|+.|++++|. +. .....+ .+++|+.|++.
T Consensus 228 ~l~~~~~l~~~--------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 228 DLSDSVMLKND--------CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECTTCTTCCGG--------GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred eCCCCCcCCHH--------HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 888887 4422 45566777888888888875 22 111122 67778888774
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.8e-18 Score=131.11 Aligned_cols=150 Identities=16% Similarity=0.258 Sum_probs=110.1
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCccc-chhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCcEEecc
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQI-SDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTLCLD 86 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~ 86 (235)
-+.++++++.++.+|..+ ...++.|++ .++.+..+ +...|..+++|++|++++|.++.+++ .|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L--~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRL--NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEEC--CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEc--CCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 357888888888887765 455678888 44444444 44556788888888888888887654 67788888888888
Q ss_pred CcCCCCc--cccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccc
Q 042164 87 WCQLEDV--AAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQW 162 (235)
Q Consensus 87 ~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 162 (235)
+|.+..+ ..++.+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8888776 4577888888888888888865 4557778888888888887 444543447778888888888887763
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=9.1e-19 Score=130.53 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=116.4
Q ss_pred CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCC--ccccCCCCCCcE
Q 042164 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIGQLKKLEI 104 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~ 104 (235)
.+++|+.|++ .++.+..++ . +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. ...++.+++|++
T Consensus 42 ~l~~L~~L~l--~~n~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITL--ANINVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEE--ESSCCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEec--cCCCccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 5778888888 444455566 3 578888889999888776654 57788889999998888885 377888889999
Q ss_pred EEecCCCCCC-cchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCcc
Q 042164 105 LSFRGSNIKQ-LPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLT 183 (235)
Q Consensus 105 L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~ 183 (235)
|++++|.++. .+..+..+++|++|++++|..++.++. +..+++|++|++++|.++. ...+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~----------~~~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD----------YRGIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC----------CTTGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC----------hHHhccCCCCC
Confidence 9999998884 566788889999999999875666763 7888999999999998872 23677888999
Q ss_pred ceeeecCCCCC
Q 042164 184 TLNIQVPDAQI 194 (235)
Q Consensus 184 ~L~l~~n~~~~ 194 (235)
.|++++|.+.+
T Consensus 185 ~L~l~~N~i~~ 195 (197)
T 4ezg_A 185 QLYAFSQTIGG 195 (197)
T ss_dssp EEEECBC----
T ss_pred EEEeeCcccCC
Confidence 99999988753
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=2.4e-18 Score=143.85 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=65.6
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
.++++++|++++|.++.+|.. .++|+.|++ .++.+..++. ++.+++|++|++++|.++.+|... ++|++|+
T Consensus 151 ~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L--~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLPDL--PPSLEFIAA--GNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP---LSLESIV 221 (454)
T ss_dssp TCTTCCEEECCSSCCSCCCCC--CTTCCEEEC--CSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEE
T ss_pred CCCCCCEEECCCCcCcccCCC--cccccEEEC--cCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCCc---CcccEEE
Confidence 345677777777777666544 346777777 3333444542 466666666666666666554321 3556666
Q ss_pred ccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCc
Q 042164 85 LDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCW 134 (235)
Q Consensus 85 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 134 (235)
+++|.+..++.++.+++|++|++++|.++.+|.. +++|+.|++++|.
T Consensus 222 l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 222 AGNNILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY 268 (454)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC
T ss_pred CcCCcCCcccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc
Confidence 6666555554455555566666655555544431 2344444444444
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=3.5e-20 Score=151.96 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=115.9
Q ss_pred cCCCcEEecCCCCCCC-----CCCcC-CCCCccEEEeccCCC---CCcccchhh------hhCCCCCcEEeecCccCCC-
Q 042164 6 RKGPIAISLPQRDIQE-----LPERL-QCPNLQLFLLFREGN---GPMQISDHF------FEGTEELKVLDFTGIHFSS- 69 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~-----i~~~~-~l~~L~~L~l~~~~~---~~~~~~~~~------~~~~~~L~~L~l~~~~~~~- 69 (235)
.+++++|++++|.+.. ++..+ .+++|+.|++ +.+. ....+|..+ +..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L-s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEEC-CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeC-cccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 4567788888877762 23333 6777777777 3331 111223322 3567777777777777764
Q ss_pred ----CChhhcCCccCcEEeccCcCCCCc------cccCCC---------CCCcEEEecCCCCC--Ccc---hhhccCCCC
Q 042164 70 ----LPSSLGRLINLQTLCLDWCQLEDV------AAIGQL---------KKLEILSFRGSNIK--QLP---LEIGQLTRL 125 (235)
Q Consensus 70 ----~~~~l~~l~~L~~L~l~~~~l~~~------~~~~~l---------~~L~~L~l~~~~~~--~~~---~~~~~l~~L 125 (235)
++..+..+++|++|++++|.+... ..+..+ ++|++|++++|.++ .++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 455667777777777777776522 222233 67777777777765 333 345566777
Q ss_pred cEEcccCCcCCCC----CchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCC-----CC
Q 042164 126 QLLDLSNCWSLEV----IPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQI-----LP 196 (235)
Q Consensus 126 ~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----~p 196 (235)
++|++++|.+... +.+..+..+++|+.|++++|.++.. .....+..+..+++|+.|++++|.+.. ++
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH----HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 7777777762211 1221256667777777777766411 001234455666667777777666653 23
Q ss_pred ccc---cccccceeEEE
Q 042164 197 QEW---VFVELQSYRIC 210 (235)
Q Consensus 197 ~~~---~~~~L~~l~l~ 210 (235)
..+ .+++|+.|+++
T Consensus 266 ~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HHHHTCSSCCCCEEECC
T ss_pred HHHhhccCCCeEEEECc
Confidence 332 15666666663
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3.4e-20 Score=149.10 Aligned_cols=213 Identities=17% Similarity=0.139 Sum_probs=161.0
Q ss_pred CCCcEEecCCCCCCCCCCcC-CC--CCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC--CChhhcCCccCc
Q 042164 7 KGPIAISLPQRDIQELPERL-QC--PNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS--LPSSLGRLINLQ 81 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~-~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~l~~l~~L~ 81 (235)
...++++++++.+. +..+ .+ ++++.+++ .++.+...+... ..+++|++|++++|.++. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l--~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRC--PRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEEC--TTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEc--CCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34788999988776 2222 34 88999999 444444444443 578999999999999874 777789999999
Q ss_pred EEeccCcCCCCc--cccCCCCCCcEEEecCC-CCC--CcchhhccCCCCcEEcccCC-cCCCC-CchhhhcCCC-CCcEE
Q 042164 82 TLCLDWCQLEDV--AAIGQLKKLEILSFRGS-NIK--QLPLEIGQLTRLQLLDLSNC-WSLEV-IPPNVISKLS-RLEEL 153 (235)
Q Consensus 82 ~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~-~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~l~~~~-~L~~L 153 (235)
+|++++|.+.+. ..++.+++|++|++++| .++ .++..+..+++|++|++++| .+.+. ++. .+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEE
Confidence 999999998743 77888999999999999 677 46777889999999999999 63332 333 478899 99999
Q ss_pred Eecccc--ccccccCCCCCccchhcccCCCccceeeecCC-CC-CCCccc-cccccceeEEEecccccccchhhhhhhhh
Q 042164 154 YMDISF--SQWDKVEGGSNASLAELKGLSKLTTLNIQVPD-AQ-ILPQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRL 228 (235)
Q Consensus 154 ~l~~n~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~-~~p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 228 (235)
++++|. ++.. ..+..+..+++|+.|++++|. ++ ..+..+ .+++|+.|++..+....+. ....++++
T Consensus 201 ~l~~~~~~~~~~-------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~~ 271 (336)
T 2ast_B 201 NLSGYRKNLQKS-------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE--TLLELGEI 271 (336)
T ss_dssp ECCSCGGGSCHH-------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG--GGGGGGGC
T ss_pred EeCCCcccCCHH-------HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH--HHHHHhcC
Confidence 999994 4311 345677789999999999999 55 555555 8899999999655433211 12356777
Q ss_pred ccccCC
Q 042164 229 MKLQGL 234 (235)
Q Consensus 229 ~~L~~L 234 (235)
++|+.|
T Consensus 272 ~~L~~L 277 (336)
T 2ast_B 272 PTLKTL 277 (336)
T ss_dssp TTCCEE
T ss_pred CCCCEE
Confidence 777765
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.3e-18 Score=130.45 Aligned_cols=151 Identities=20% Similarity=0.216 Sum_probs=120.7
Q ss_pred CCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-ChhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEE
Q 042164 29 PNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEIL 105 (235)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L 105 (235)
...+.++. .+..+..+|.. -.++|++|++++|.++.+ +..+..+++|++|++++|.+..+ ..+..+++|++|
T Consensus 19 Cs~~~v~c--~~~~l~~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 19 CSGTTVDC--RSKRHASVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp EETTEEEC--TTSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EeCCEeEc--cCCCcCccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 34556676 66666777764 348889999999999875 56688899999999999998877 557888999999
Q ss_pred EecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccc
Q 042164 106 SFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTT 184 (235)
Q Consensus 106 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~ 184 (235)
++++|.++.++.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.++.. ....+..+++|+.
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSI--------PHGAFDRLSSLTH 163 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCE
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCcc--------CHHHHhCCCCCCE
Confidence 9999999877655 6788999999999998 6678776 68889999999999988733 2356777889999
Q ss_pred eeeecCCCCC
Q 042164 185 LNIQVPDAQI 194 (235)
Q Consensus 185 L~l~~n~~~~ 194 (235)
|++++|++..
T Consensus 164 L~l~~N~~~c 173 (229)
T 3e6j_A 164 AYLFGNPWDC 173 (229)
T ss_dssp EECTTSCBCT
T ss_pred EEeeCCCccC
Confidence 9999998873
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3e-18 Score=128.69 Aligned_cols=150 Identities=21% Similarity=0.275 Sum_probs=128.8
Q ss_pred cccCCCcEEecCCCCCCCCCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccC
Q 042164 4 TIRKGPIAISLPQRDIQELPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINL 80 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L 80 (235)
..++++++|++++|.++.++... .+++|+.|++ .++.+..++...|..+++|++|++++|.++.+++ .+..+++|
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYL--GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEEC--CCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 34578999999999999887754 8999999999 5566667787777899999999999999998765 46899999
Q ss_pred cEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecc
Q 042164 81 QTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDI 157 (235)
Q Consensus 81 ~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 157 (235)
++|++++|.+..+ ..++.+++|++|++++|.++.++.. +..+++|++|++++|.+. +.+++|+.++++.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHH
Confidence 9999999999987 4578999999999999999987765 788999999999999632 4567799999999
Q ss_pred cccccc
Q 042164 158 SFSQWD 163 (235)
Q Consensus 158 n~~~~~ 163 (235)
|.+++.
T Consensus 175 n~~~g~ 180 (208)
T 2o6s_A 175 NKHSGV 180 (208)
T ss_dssp HHCTTT
T ss_pred HhCCce
Confidence 988854
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.3e-18 Score=140.82 Aligned_cols=210 Identities=19% Similarity=0.151 Sum_probs=162.5
Q ss_pred cEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC-CCh-hhcCCccCcE-Eecc
Q 042164 10 IAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS-LPS-SLGRLINLQT-LCLD 86 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~l~~l~~L~~-L~l~ 86 (235)
+.++.+++.+++||..+ .+++++|++ .++.+..++...|+.+++|++|+|++|.+.+ ++. .|..++++++ +...
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~L--s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRF--VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEE--ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEc--cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67899999999999877 578999999 6677788998878999999999999999865 654 5788888776 4556
Q ss_pred CcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCC-CCcEEEeccccccc
Q 042164 87 WCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLS-RLEELYMDISFSQW 162 (235)
Q Consensus 87 ~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~ 162 (235)
.|.+..+ ..++.+++|++|++++|.++.++.. +.....+..+++.++..+..++...+..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6888877 6789999999999999999977654 556778889998775447777766566664 68999999999983
Q ss_pred cccCCCCCccchhcccCCCccceeee-cCCCCCCCccc--cccccceeEEEecccccccchhhhhhhhhccccCC
Q 042164 163 DKVEGGSNASLAELKGLSKLTTLNIQ-VPDAQILPQEW--VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~L~~L~l~-~n~~~~~p~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
. ........+|++++++ +|.++.+|... .+++|+.|+++ ++... .. .+.++.++++|..+
T Consensus 169 i---------~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs-~N~l~-~l-p~~~~~~L~~L~~l 231 (350)
T 4ay9_X 169 I---------HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS-RTRIH-SL-PSYGLENLKKLRAR 231 (350)
T ss_dssp E---------CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT-TSCCC-CC-CSSSCTTCCEEECT
T ss_pred C---------ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC-CCCcC-cc-ChhhhccchHhhhc
Confidence 3 3333345689999997 57789999865 88999999995 55542 22 23456666666543
No 104
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=7.2e-18 Score=140.99 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=56.1
Q ss_pred hhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcc
Q 042164 51 FEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDL 130 (235)
Q Consensus 51 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 130 (235)
|+.+++|++|++++|.++.+|.. .++|++|++++|.+.+++.++.+++|++|++++|.++.+|.. .++|++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVA 222 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEEC
Confidence 35555555555555555554432 135555555555555554455556666666666655554432 235666666
Q ss_pred cCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 131 SNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
++|. ...+|. ++.+++|++|++++|.++
T Consensus 223 ~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 223 GNNI-LEELPE--LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CSSC-CSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred cCCc-CCcccc--cCCCCCCCEEECCCCcCC
Confidence 6665 335552 566666666666666665
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=2.1e-21 Score=166.33 Aligned_cols=190 Identities=21% Similarity=0.237 Sum_probs=117.7
Q ss_pred cCCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCC-------------CcccchhhhhCCCCCcEEe-ecCccCCCC
Q 042164 6 RKGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNG-------------PMQISDHFFEGTEELKVLD-FTGIHFSSL 70 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~ 70 (235)
.+++++|++++|.++.+|+.+ .+++|+.|++ .++. ....++..++.+++|+.|+ ++.|.+..+
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l--~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhcc--ccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 456667777777777777666 6777777776 3332 1112222345566666666 444433322
Q ss_pred Ch------hhcC--CccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchh
Q 042164 71 PS------SLGR--LINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPN 142 (235)
Q Consensus 71 ~~------~l~~--l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 142 (235)
+. .+.. ...|+.|++++|.+++++.++.+++|+.|++++|.++.+|..++.+++|+.|++++|. +..+| .
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~ 503 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c
Confidence 11 1111 1247777777777777755777777777777777777777777777777777777776 44465 3
Q ss_pred hhcCCCCCcEEEeccccccccccCCCCCcc-chhcccCCCccceeeecCCCCCCCccc-----cccccceeE
Q 042164 143 VISKLSRLEELYMDISFSQWDKVEGGSNAS-LAELKGLSKLTTLNIQVPDAQILPQEW-----VFVELQSYR 208 (235)
Q Consensus 143 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~p~~~-----~~~~L~~l~ 208 (235)
++.+++|+.|++++|.+++. . +..++.+++|+.|++++|.+..+|+.. .+++|+.|+
T Consensus 504 -l~~l~~L~~L~Ls~N~l~~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 -VANLPRLQELLLCNNRLQQS--------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GTTCSSCCEEECCSSCCCSS--------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -cCCCCCCcEEECCCCCCCCC--------CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 67777777777777777632 2 556677777777777777777665543 356666554
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.9e-18 Score=129.30 Aligned_cols=148 Identities=19% Similarity=0.250 Sum_probs=116.4
Q ss_pred cEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEec
Q 042164 32 QLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFR 108 (235)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~ 108 (235)
+.++. .++.+..+|..+ ...++.|++++|.++.+++ .+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 14 ~~v~c--~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDC--RGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEEC--TTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEc--CCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 45666 555666677643 3678899999998887654 678888999999999988876 778888999999999
Q ss_pred CCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceee
Q 042164 109 GSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNI 187 (235)
Q Consensus 109 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 187 (235)
+|.++.+|.. +..+++|++|++++|. +..+++..+..+++|+.|++++|.++.. ....+..+++|+.|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTI--------AKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEE--------CHHHHhCCCCCCEEEe
Confidence 9998888765 6788899999999988 5555555588888999999999988744 3345777888999999
Q ss_pred ecCCCC
Q 042164 188 QVPDAQ 193 (235)
Q Consensus 188 ~~n~~~ 193 (235)
++|++.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 998875
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=4.6e-18 Score=145.29 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=137.2
Q ss_pred ccCCCcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEe
Q 042164 5 IRKGPIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLC 84 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 84 (235)
.+++++.|++++|.++.+| ..+++|+.|++ .++.+..+|. +.. +|++|++++|.++.+|. .+++|++|+
T Consensus 78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~L--s~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP--ELPASLEYLDA--CDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC--CCCTTCCEEEC--CSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred HcCCCCEEECcCCCCcccc--cccCCCCEEEc--cCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEe
Confidence 4578999999999999999 45899999999 4455555776 344 99999999999999887 789999999
Q ss_pred ccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCC-------cEEEecc
Q 042164 85 LDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRL-------EELYMDI 157 (235)
Q Consensus 85 l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L-------~~L~l~~ 157 (235)
+++|.+++++. .+++|++|++++|.++.+|. +. ++|+.|++++|. +..+|. +.. +| +.|++++
T Consensus 147 Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 147 ADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCS
T ss_pred CCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCC
Confidence 99999998854 67899999999999999888 65 899999999998 667776 333 66 9999999
Q ss_pred ccccccccCCCCCccchhcccCCCccceeeecCCCC-CCCccc
Q 042164 158 SFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ-ILPQEW 199 (235)
Q Consensus 158 n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~p~~~ 199 (235)
|.++ .++..+..+++|+.|++++|++. .+|..+
T Consensus 217 N~l~---------~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 217 NRIT---------HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SCCC---------CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred Ccce---------ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 9998 34666777999999999999997 555544
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=5.6e-18 Score=122.97 Aligned_cols=140 Identities=22% Similarity=0.180 Sum_probs=119.0
Q ss_pred CCCCCcEEeecCccCC--CCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCC-cchhhccCCCCcEEc
Q 042164 53 GTEELKVLDFTGIHFS--SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQ-LPLEIGQLTRLQLLD 129 (235)
Q Consensus 53 ~~~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 129 (235)
..+.+++|++++|.++ .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 4588999999999998 6888889999999999999999988888899999999999999997 777788899999999
Q ss_pred ccCCcCCCCCch-hhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCcc
Q 042164 130 LSNCWSLEVIPP-NVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQE 198 (235)
Q Consensus 130 l~~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~ 198 (235)
+++|. +..++. ..+..+++|++|++++|.+++. .......+..+++|+.|++++|.+.++|..
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNL-----NDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTS-----TTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcch-----HHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99998 566552 3488999999999999999833 000114788899999999999999888864
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=1.9e-19 Score=147.56 Aligned_cols=204 Identities=18% Similarity=0.231 Sum_probs=153.0
Q ss_pred ccCCCcEEecCCCCCCCC----CCc--------CCCCCccEEEeccCCCCCc----ccchhhhhCCCCCcEEeecCccCC
Q 042164 5 IRKGPIAISLPQRDIQEL----PER--------LQCPNLQLFLLFREGNGPM----QISDHFFEGTEELKVLDFTGIHFS 68 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~i----~~~--------~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~ 68 (235)
.+++|++|++++|.+..+ |.. ..+++|+.|++ +.+.... .++.. +..+++|++|++++|.++
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L-s~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL-SDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC-CSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC-CCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCC
Confidence 468899999999876533 332 26899999999 5554433 24433 578999999999999986
Q ss_pred C-----CChhhcCC---------ccCcEEeccCcCCC--Cc----cccCCCCCCcEEEecCCCCC--C---cch-hhccC
Q 042164 69 S-----LPSSLGRL---------INLQTLCLDWCQLE--DV----AAIGQLKKLEILSFRGSNIK--Q---LPL-EIGQL 122 (235)
Q Consensus 69 ~-----~~~~l~~l---------~~L~~L~l~~~~l~--~~----~~~~~l~~L~~L~l~~~~~~--~---~~~-~~~~l 122 (235)
. ++..+..+ ++|++|++++|.+. .+ ..+..+++|++|++++|.++ . +.+ .+..+
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 3 23334445 89999999999987 33 35667889999999999988 2 333 67889
Q ss_pred CCCcEEcccCCcCC----CCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhc--ccCCCccceeeecCCCCC--
Q 042164 123 TRLQLLDLSNCWSL----EVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAEL--KGLSKLTTLNIQVPDAQI-- 194 (235)
Q Consensus 123 ~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~-- 194 (235)
++|++|++++|.+. ..++.. +..+++|++|++++|.++.. .....+..+ +.+++|+.|++++|.+..
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~----~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLSAR----GAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHH----HHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCCCchh----hHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 99999999999842 445554 78999999999999998732 111123455 338999999999999986
Q ss_pred ---CCccc--cccccceeEEEeccccc
Q 042164 195 ---LPQEW--VFVELQSYRICIGNKWW 216 (235)
Q Consensus 195 ---~p~~~--~~~~L~~l~l~~~~~~~ 216 (235)
+|..+ .+++|+.|++. ++.+.
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~-~N~l~ 316 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELN-GNRFS 316 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECT-TSBSC
T ss_pred HHHHHHHHHhcCCCceEEEcc-CCcCC
Confidence 88776 47999999994 55553
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=9.6e-18 Score=127.13 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=121.8
Q ss_pred ccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC--hhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEE
Q 042164 31 LQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP--SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILS 106 (235)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~ 106 (235)
-+.+++ .++.+..+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.+..+ ..++.+++|++|+
T Consensus 13 ~~~l~~--s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDC--SNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEEC--CSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEeEe--CCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 357777 666666777643 456789999999998763 3478999999999999999977 5789999999999
Q ss_pred ecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccce
Q 042164 107 FRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTL 185 (235)
Q Consensus 107 l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L 185 (235)
+++|.++.++.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+++. .+..+..+++|+.|
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L 158 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTL 158 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEE
Confidence 999999977654 8889999999999998 5555444588999999999999999844 45677888999999
Q ss_pred eeecCCCC
Q 042164 186 NIQVPDAQ 193 (235)
Q Consensus 186 ~l~~n~~~ 193 (235)
++++|++.
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 99999986
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.3e-17 Score=135.56 Aligned_cols=156 Identities=25% Similarity=0.346 Sum_probs=132.8
Q ss_pred cccCCCcEEecCCCCCCCCCCcC---CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCcc
Q 042164 4 TIRKGPIAISLPQRDIQELPERL---QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLIN 79 (235)
Q Consensus 4 ~~~~~l~~L~l~~~~l~~i~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~ 79 (235)
..++.++.|++++|.++.++... .+++|+.|++ .++.+..++...|..+++|++|++++|.++.+++ .|..+++
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L--~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL--SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEEC--CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEEC--CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 34567999999999999876654 7899999999 6666667777668999999999999999998654 6889999
Q ss_pred CcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchhh----ccCCCCcEEcccCCcCCCCCchhhhcCCCC--Cc
Q 042164 80 LQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLEI----GQLTRLQLLDLSNCWSLEVIPPNVISKLSR--LE 151 (235)
Q Consensus 80 L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~--L~ 151 (235)
|++|++++|.+..+ ..+..+++|++|++++|.++.+|..+ ..+++|++|++++|. +..++...+..+++ ++
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHT
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcc
Confidence 99999999999977 77899999999999999999988764 579999999999998 67788766788876 48
Q ss_pred EEEeccccccc
Q 042164 152 ELYMDISFSQW 162 (235)
Q Consensus 152 ~L~l~~n~~~~ 162 (235)
.|++++|.+..
T Consensus 193 ~l~l~~N~~~C 203 (361)
T 2xot_A 193 GLYLHNNPLEC 203 (361)
T ss_dssp TEECCSSCEEC
T ss_pred eEEecCCCccC
Confidence 89999998763
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=9.4e-20 Score=152.49 Aligned_cols=183 Identities=17% Similarity=0.168 Sum_probs=107.0
Q ss_pred ccCCCcEEecCCCCCC-----CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCC----CCcEEeecCccCCC-----
Q 042164 5 IRKGPIAISLPQRDIQ-----ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTE----ELKVLDFTGIHFSS----- 69 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~-----~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----- 69 (235)
.++++++|++++|.++ .++..+ .+++|++|++ +.+......+..++..+. +|++|++++|.++.
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL-RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC-TTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC-CCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 3567888888888776 334444 6788888888 443332223333334454 58888888887762
Q ss_pred CChhhcCCccCcEEeccCcCCCCc--c----c-cCCCCCCcEEEecCCCCCC-----cchhhccCCCCcEEcccCCcCCC
Q 042164 70 LPSSLGRLINLQTLCLDWCQLEDV--A----A-IGQLKKLEILSFRGSNIKQ-----LPLEIGQLTRLQLLDLSNCWSLE 137 (235)
Q Consensus 70 ~~~~l~~l~~L~~L~l~~~~l~~~--~----~-~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~ 137 (235)
++..+..+++|++|++++|.+... . . ....++|++|++++|.++. ++..+..+++|++|++++|. ++
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-IN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cc
Confidence 456677788888888888876532 1 1 2234567777777777663 34445666777777777776 32
Q ss_pred CCchhhhc-----CCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 138 VIPPNVIS-----KLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 138 ~~~~~~l~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
......+. ..++|++|++++|.++.. ........+..+++|++|++++|.+.
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSD----NCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTT----HHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHH----HHHHHHHHHHhCCCccEEeccCCcCC
Confidence 22111121 245677777777666522 00012334445556666666666554
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=3.1e-19 Score=149.33 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=95.0
Q ss_pred CCcEEecCCCCCCC-----CCCcC-CCCCccEEEeccCCCCCcccchhhh-----hCCCCCcEEeecCccCCC-----CC
Q 042164 8 GPIAISLPQRDIQE-----LPERL-QCPNLQLFLLFREGNGPMQISDHFF-----EGTEELKVLDFTGIHFSS-----LP 71 (235)
Q Consensus 8 ~l~~L~l~~~~l~~-----i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~-----~~ 71 (235)
++++|++++|.++. ++..+ .+++|+.|++ +.+ .+...+...+ ...+.|++|++++|.++. ++
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L-~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV-SNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC-CSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC-cCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 46666666665542 12222 4566677776 333 3322211111 124567777777776664 34
Q ss_pred hhhcCCccCcEEeccCcCCCCc------cc-cCCCCCCcEEEecCCCCCC-----cchhhccCCCCcEEcccCCcCCCCC
Q 042164 72 SSLGRLINLQTLCLDWCQLEDV------AA-IGQLKKLEILSFRGSNIKQ-----LPLEIGQLTRLQLLDLSNCWSLEVI 139 (235)
Q Consensus 72 ~~l~~l~~L~~L~l~~~~l~~~------~~-~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~ 139 (235)
..+..+++|++|++++|.+... .. +..+++|++|++++|.++. ++..+..+++|++|++++|. ++..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~ 299 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDE 299 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchH
Confidence 4556677777777777766532 11 2246677777777777763 55556667777777777776 3221
Q ss_pred chhhh-----cCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 140 PPNVI-----SKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 140 ~~~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
....+ ...++|++|++++|.+++. ........+..+++|++|++++|.+.
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAA----CCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGG----GHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchH----HHHHHHHHHhhCCCccEEEccCCccc
Confidence 11111 1224666666666665522 00112333444555566666555554
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=2e-18 Score=140.40 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=148.7
Q ss_pred EEecCCCCCCCC-CCcC-CCCCccEEEeccCCCCCcccch----hhhhCCC-CCcEEeecCccCCCC-ChhhcCC-----
Q 042164 11 AISLPQRDIQEL-PERL-QCPNLQLFLLFREGNGPMQISD----HFFEGTE-ELKVLDFTGIHFSSL-PSSLGRL----- 77 (235)
Q Consensus 11 ~L~l~~~~l~~i-~~~~-~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~-~~~l~~l----- 77 (235)
..+++.+.++.. |... ..++|+.|++ .++.+...+. ..+..++ +|++|++++|.++.. +..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDL--SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEEC--TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEc--cCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 467888888754 4444 4555999999 5555665554 4567788 899999999999864 4455554
Q ss_pred ccCcEEeccCcCCCCc------cccCCC-CCCcEEEecCCCCCCcch-h----hcc-CCCCcEEcccCCcCCCCCch---
Q 042164 78 INLQTLCLDWCQLEDV------AAIGQL-KKLEILSFRGSNIKQLPL-E----IGQ-LTRLQLLDLSNCWSLEVIPP--- 141 (235)
Q Consensus 78 ~~L~~L~l~~~~l~~~------~~~~~l-~~L~~L~l~~~~~~~~~~-~----~~~-l~~L~~L~l~~~~~~~~~~~--- 141 (235)
++|++|++++|.+... ..+..+ ++|++|++++|.++..+. . +.. .++|++|++++|.+......
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 9999999999998854 235555 899999999999985543 2 334 36999999999984332221
Q ss_pred hhhcCCC-CCcEEEeccccccccccCCCCCccchhcccC-CCccceeeecCCCCC-----CCccc-c-ccccceeEEEec
Q 042164 142 NVISKLS-RLEELYMDISFSQWDKVEGGSNASLAELKGL-SKLTTLNIQVPDAQI-----LPQEW-V-FVELQSYRICIG 212 (235)
Q Consensus 142 ~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~-----~p~~~-~-~~~L~~l~l~~~ 212 (235)
..+..++ +|++|++++|.++.. ........+..+ ++|+.|++++|.+.. ++..+ . .++|+.|+++ +
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls-~ 234 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASK----NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC-L 234 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGS----CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC-S
T ss_pred HHHhcCCccccEeeecCCCCchh----hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc-C
Confidence 1245565 999999999999744 111223355566 599999999999986 55554 3 4699999995 4
Q ss_pred cccccc--chhhhhhhhhccccCC
Q 042164 213 NKWWSS--WSVKSGLSRLMKLQGL 234 (235)
Q Consensus 213 ~~~~~~--~~~~~~~~~l~~L~~L 234 (235)
+...+. ......+..+++|+.|
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CCCCcHHHHHHHHHHhcCCCccEE
Confidence 444221 1112334455555544
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=1e-16 Score=116.26 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=56.7
Q ss_pred cCCCcEEecCCCCCC--CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC-CChhhcCCccCc
Q 042164 6 RKGPIAISLPQRDIQ--ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS-LPSSLGRLINLQ 81 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~--~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L~ 81 (235)
++++++|++++|.+. .+|..+ .+++|+.|++ +.+. +..+ ..+..+++|++|++++|.++. +|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l-~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL-INVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEE-ESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeC-cCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 344555555555554 444443 4455555555 2222 2222 113445555555555555544 343334455555
Q ss_pred EEeccCcCCCCc---cccCCCCCCcEEEecCCCCCCcch----hhccCCCCcEEcccCCc
Q 042164 82 TLCLDWCQLEDV---AAIGQLKKLEILSFRGSNIKQLPL----EIGQLTRLQLLDLSNCW 134 (235)
Q Consensus 82 ~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 134 (235)
+|++++|.+..+ ..++.+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 555555544433 234444444444444444443333 34444444444444443
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=7.4e-17 Score=114.71 Aligned_cols=130 Identities=19% Similarity=0.147 Sum_probs=102.1
Q ss_pred CCCCCcEEeecCccCC--CCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCC-cchhhccCCCCcEEc
Q 042164 53 GTEELKVLDFTGIHFS--SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQ-LPLEIGQLTRLQLLD 129 (235)
Q Consensus 53 ~~~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 129 (235)
..++++.|++++|.++ .+|..+..+++|++|++++|.+.++..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4577899999999988 6887788899999999999998877778888899999999998886 676677788999999
Q ss_pred ccCCcCCCCCc-hhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeee
Q 042164 130 LSNCWSLEVIP-PNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQ 188 (235)
Q Consensus 130 l~~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 188 (235)
+++|. +..++ ...++.+++|++|++++|.+++. .......++.+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-----~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNL-----NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGS-----TTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccch-----HHHHHHHHHHCCCcccccCC
Confidence 99988 55543 13378888899999998888733 00011367778888888875
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.69 E-value=1.3e-16 Score=116.63 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=106.0
Q ss_pred hhCCCCCcEEeecCccCCCCChhhcCC-ccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEE
Q 042164 51 FEGTEELKVLDFTGIHFSSLPSSLGRL-INLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLL 128 (235)
Q Consensus 51 ~~~~~~L~~L~l~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 128 (235)
+..+.+|++|++++|.++.++. +..+ ++|++|++++|.+.++..++.+++|++|++++|.++.+|.. +..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4577888999999998888765 4444 48999999999988877888889999999999999877755 4888999999
Q ss_pred cccCCcCCCCCch-hhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 129 DLSNCWSLEVIPP-NVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 129 ~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
++++|. ++.++. ..+..+++|+.|++++|.+... .......+..+++|+.||+++|...
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-----~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNK-----KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGS-----TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCc-----HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999998 566765 2378888999999999988732 0001124778889999999888765
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2.5e-17 Score=145.02 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCCcEEecCCCCCCCCCCcC-CCCCccEEEec---cCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcE
Q 042164 7 KGPIAISLPQRDIQELPERL-QCPNLQLFLLF---REGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQT 82 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~ 82 (235)
+.++.|++.++.+..++... ....|..+.+. ..++.+. ++...|..+..|+.|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 35778888888887665554 44444444330 0222222 4455578899999999999999999988889999999
Q ss_pred EeccCcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 83 LCLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 83 L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
|++++|.+..+ ..++.+++|++|++++|.++.+|..++.+++|++|++++|. ++.+|.. ++.+++|+.|++++|.++
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 99999999988 77899999999999999999999999999999999999998 6788887 899999999999999988
Q ss_pred cc
Q 042164 162 WD 163 (235)
Q Consensus 162 ~~ 163 (235)
+.
T Consensus 330 ~~ 331 (727)
T 4b8c_D 330 KQ 331 (727)
T ss_dssp SH
T ss_pred CC
Confidence 44
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.7e-16 Score=115.86 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=65.5
Q ss_pred cEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh--hcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEe
Q 042164 32 QLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS--LGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 107 (235)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l 107 (235)
+.+++ .++.+..+|..+ ...+++|++++|.++.+++. +..+++|++|++++|.++++ ..++.+++|++|++
T Consensus 11 ~~l~~--s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDC--TGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEEC--TTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEc--CCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 44555 334444455432 22556666666666554432 55566666666666665554 44555566666666
Q ss_pred cCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 108 RGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 108 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
++|.++.++.. +..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCcc
Confidence 66665544332 55555666666666553222222 2555555666666655554
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=4.1e-16 Score=110.82 Aligned_cols=123 Identities=19% Similarity=0.193 Sum_probs=75.0
Q ss_pred ccCCCcEEecCCCCCC--CCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCC-CChhhcCCccC
Q 042164 5 IRKGPIAISLPQRDIQ--ELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSS-LPSSLGRLINL 80 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~--~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~l~~L 80 (235)
.++++++|++++|.++ .+|..+ .+++|+.|++ .++.+..+ ..+..+++|++|++++|.++. +|..+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l--~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST--INVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEEC--TTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEEC--cCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 3456777777777776 566654 6677777777 33333333 224666677777777776665 55555556666
Q ss_pred cEEeccCcCCCCc---cccCCCCCCcEEEecCCCCCCcch----hhccCCCCcEEccc
Q 042164 81 QTLCLDWCQLEDV---AAIGQLKKLEILSFRGSNIKQLPL----EIGQLTRLQLLDLS 131 (235)
Q Consensus 81 ~~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~ 131 (235)
++|++++|.+.++ ..++.+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666666654 455566666666666666665443 35556666666554
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=3.5e-16 Score=125.50 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=47.7
Q ss_pred cCCCcEEecCCCCCC--------------------CCCCcC--C--------CCCccEEEeccCCCCCcccchhhhhCCC
Q 042164 6 RKGPIAISLPQRDIQ--------------------ELPERL--Q--------CPNLQLFLLFREGNGPMQISDHFFEGTE 55 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~--------------------~i~~~~--~--------l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 55 (235)
+++|+.|++++|.+. .||+.. + |++|+.+.+ .. .+..+++..|..+.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L--~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVIL--SE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CB--CT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEEC--Cc-cccchhHHHhhcCc
Confidence 578999999999887 233333 4 666666666 33 44556666666666
Q ss_pred CCcEEeecCccCCCCC-hhhcCCccCcEEeccC
Q 042164 56 ELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDW 87 (235)
Q Consensus 56 ~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~ 87 (235)
+|+.+++++|.+..++ ..|..+.++..+....
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 6666666666655543 3345555555554443
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=112.30 Aligned_cols=124 Identities=18% Similarity=0.285 Sum_probs=90.2
Q ss_pred cEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecC
Q 042164 32 QLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRG 109 (235)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~ 109 (235)
+.++. .++.+..+|..+ ...+++|++++|.++.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++
T Consensus 13 ~~l~~--~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRC--SNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEEC--TTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEc--CCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45565 555566666542 3577888888888877777777888888888888887766 5577778888888888
Q ss_pred CCCCCcch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 110 SNIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 110 ~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
|.++.++. .+..+++|++|++++|. +..++...+..+++|+.+++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 88776654 47777788888888877 55666655777777888888777775
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=3.7e-15 Score=110.43 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=111.3
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccch-hhhhCCCCCcEEeecCccCCCC-ChhhcCCccCcEEecc
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISD-HFFEGTEELKVLDFTGIHFSSL-PSSLGRLINLQTLCLD 86 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~ 86 (235)
-+.++++++.++.+|..+ ..+++.|++ .++.+..++. ..|..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~~~-~~~l~~L~l--~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDI-PLHTTELLL--NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEEC--CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCC-CCCCCEEEC--CCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 378999999999999876 349999999 5555665654 3578999999999999999986 6789999999999999
Q ss_pred CcCCCCc--cccCCCCCCcEEEecCCCCCCc-chhhccCCCCcEEcccCCcCCCCCch
Q 042164 87 WCQLEDV--AAIGQLKKLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCWSLEVIPP 141 (235)
Q Consensus 87 ~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~ 141 (235)
+|.+.++ ..++.+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999987 5688999999999999999965 66689999999999999986665543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=4.3e-15 Score=110.19 Aligned_cols=123 Identities=21% Similarity=0.378 Sum_probs=92.4
Q ss_pred cEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEeccCc
Q 042164 10 IAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWC 88 (235)
Q Consensus 10 ~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~ 88 (235)
+.++++++.++.+|..+ .++++.|++ .++.+..+|.. |..+++|++|++++|.++.++ ..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L--~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYL--DGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEEC--CSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEEC--CCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56788888888887665 467888888 55555566643 577888888888888888765 45778888888888888
Q ss_pred CCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCC
Q 042164 89 QLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSL 136 (235)
Q Consensus 89 ~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 136 (235)
.+..+ ..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88876 4677888888888888888877664 777888888888887643
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=5.1e-15 Score=108.21 Aligned_cols=126 Identities=22% Similarity=0.303 Sum_probs=64.7
Q ss_pred CcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCC
Q 042164 57 LKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNC 133 (235)
Q Consensus 57 L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 133 (235)
.+.+++++++++.+|..+ .++|++|++++|.+.++ ..++.+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345555555555554322 24555555555555544 2345555555555555555544433 455555555555555
Q ss_pred cCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 134 WSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 134 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
. +..++...+..+++|++|++++|.+++. ....+..+++|+.|++++|++.
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 K-LQSLPNGVFDKLTQLKELALDTNQLKSV--------PDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccccCHHHhhCCcccCEEECcCCcceEe--------CHHHhcCCcccCEEEecCCCee
Confidence 5 3344444345555566666655555522 1223344555666666666554
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=1.6e-15 Score=110.80 Aligned_cols=130 Identities=16% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc-cc-cCCCCCCcE
Q 042164 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AA-IGQLKKLEI 104 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~-~~~l~~L~~ 104 (235)
.+.+|+.|++ .++.+..++. +....++|++|++++|.++.+ +.+..+++|++|++++|.+..+ .. ++.+++|++
T Consensus 17 ~~~~L~~L~l--~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDL--RGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEEC--TTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEe--eCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 5555666666 3333333432 222233666666666666555 3455666666666666666655 22 355666666
Q ss_pred EEecCCCCCCcch--hhccCCCCcEEcccCCcCCCCCchh---hhcCCCCCcEEEecccccc
Q 042164 105 LSFRGSNIKQLPL--EIGQLTRLQLLDLSNCWSLEVIPPN---VISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 105 L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~~~~L~~L~l~~n~~~ 161 (235)
|++++|.++.+|. .+..+++|++|++++|. +..++.. ++..+++|+.++++.|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666665554 45666666666666665 3344432 3556666666666666543
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=9.7e-15 Score=106.69 Aligned_cols=105 Identities=24% Similarity=0.437 Sum_probs=49.3
Q ss_pred CCcEEeecCccCCCCCh-hhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEccc
Q 042164 56 ELKVLDFTGIHFSSLPS-SLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLS 131 (235)
Q Consensus 56 ~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~ 131 (235)
.++.|++++|.++.++. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.++.++.. +..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444444332 234444444444444444433 2234444555555555555444332 3445555555555
Q ss_pred CCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 132 NCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
+|. +..++...+..+++|+++++++|.+.
T Consensus 109 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 554 33444443445555555555555554
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.6e-16 Score=139.87 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=110.7
Q ss_pred CCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc-cccCCCC
Q 042164 23 PERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLK 100 (235)
Q Consensus 23 ~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~ 100 (235)
+..+ .+++|+.|++ .++.+..++..++ .++.|++|+|++|.++.+|..+..+++|++|++++|.+..+ ..++.++
T Consensus 217 ~~~~~~l~~L~~L~L--s~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDL--SNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEEC--TTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEEC--CCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 4444 8899999999 5556668888764 89999999999999999999999999999999999999988 7889999
Q ss_pred CCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCC-CCcEEEecccccc
Q 042164 101 KLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLS-RLEELYMDISFSQ 161 (235)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~ 161 (235)
+|++|++++|.++.+|..++.+++|++|++++|.+.+.+|.. +..+. ....+++++|.++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence 999999999999999999999999999999999965555544 43322 1233567777776
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=1.4e-15 Score=130.88 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=81.6
Q ss_pred cCCCcEEecCCCCCCCCC-----CcC-CCCCccEEEeccCCCCCc---ccchhhhhCCCCCcEEeecCccCCCCChhhcC
Q 042164 6 RKGPIAISLPQRDIQELP-----ERL-QCPNLQLFLLFREGNGPM---QISDHFFEGTEELKVLDFTGIHFSSLPSSLGR 76 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i~-----~~~-~l~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 76 (235)
+++|++|++++|.+.... ... .+++|+.|++ +.+.... .....++..+++|+.|++++|.+..++..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L-~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF-YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEEC-TTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEe-eccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 456666666666554221 112 4666666666 3333220 11112235567777777777666666666666
Q ss_pred CccCcEEeccCcCCC----Cc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCc
Q 042164 77 LINLQTLCLDWCQLE----DV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLE 151 (235)
Q Consensus 77 l~~L~~L~l~~~~l~----~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 151 (235)
+++|++++++.+... .. ..++.+++|+.++++.+....+|..+..+++|++|++++|.+.+......+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 666776666542211 11 4445556666666666544455666666777777777776622222223345666666
Q ss_pred EEEec
Q 042164 152 ELYMD 156 (235)
Q Consensus 152 ~L~l~ 156 (235)
+|+++
T Consensus 322 ~L~L~ 326 (592)
T 3ogk_B 322 VLETR 326 (592)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 66665
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=2.2e-15 Score=129.73 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=81.4
Q ss_pred cCCCcEEecCCCCCCCC-----CCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecC---------------
Q 042164 6 RKGPIAISLPQRDIQEL-----PERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTG--------------- 64 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~~i-----~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------------- 64 (235)
+++|++|+++++.++.+ +... .+++|+.|++ .. +....++. .+..+++|+.|+++.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L-~~-~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV-GD-FEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC-SS-CBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec-cC-ccHHHHHH-HHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 56788888888877633 2222 6778888887 33 33333442 245556666666542
Q ss_pred ------------ccCCCCChhhcCCccCcEEeccCcCCCCc---cccCCCCCCcEEEecCCCCC--CcchhhccCCCCcE
Q 042164 65 ------------IHFSSLPSSLGRLINLQTLCLDWCQLEDV---AAIGQLKKLEILSFRGSNIK--QLPLEIGQLTRLQL 127 (235)
Q Consensus 65 ------------~~~~~~~~~l~~l~~L~~L~l~~~~l~~~---~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~ 127 (235)
+....+|..+..+++|++|++++|.+... ..++.+++|++|+++ +.+. .++.....+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 22223444455666777777777765422 334566666666666 3332 23333445666666
Q ss_pred EcccC----------CcCCCCC-chhhhcCCCCCcEEEecccccc
Q 042164 128 LDLSN----------CWSLEVI-PPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 128 L~l~~----------~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
|++++ +...+.. ...+...+++|++|+++.+.++
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 66662 2112211 1122344566666666555554
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=2.6e-17 Score=122.68 Aligned_cols=111 Identities=23% Similarity=0.237 Sum_probs=55.9
Q ss_pred hhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcE
Q 042164 73 SLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEE 152 (235)
Q Consensus 73 ~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 152 (235)
.+..+++|++|++++|.+.+++.++.+++|++|++++|.++.+|..+..+++|++|++++|. +..++ . +..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~-~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-G-IEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H-HHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-c-cccCCCCCE
Confidence 45555555555555555554444445555555555555555555444445555555555554 33333 2 445555555
Q ss_pred EEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 153 LYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 153 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
|++++|.++.. .....+..+++|+.|++++|++.
T Consensus 120 L~l~~N~i~~~-------~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 120 LYMSNNKITNW-------GEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEESEEECCCH-------HHHHHHTTTTTCSEEEECSCHHH
T ss_pred EECCCCcCCch-------hHHHHHhcCCCCCEEEecCCccc
Confidence 55555555421 01124445555555555555554
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=2.7e-14 Score=122.29 Aligned_cols=125 Identities=19% Similarity=0.211 Sum_probs=106.4
Q ss_pred CCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhccCCCCcEEcccCC
Q 042164 55 EELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQLTRLQLLDLSNC 133 (235)
Q Consensus 55 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 133 (235)
..|+.|++++|.++.+|. +..+++|++|++++|.+..+ ..++.+++|++|++++|.++.+| .++.+++|+.|++++|
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 358999999999999987 99999999999999999988 88999999999999999999988 8999999999999999
Q ss_pred cCCCCC-chhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceee
Q 042164 134 WSLEVI-PPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNI 187 (235)
Q Consensus 134 ~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 187 (235)
.+.+.. |.. ++.+++|+.|++++|.+++. .+.....+..+|+|+.|++
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE-----EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGGGS-----SSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCCCC-----ccHHHHHHHHCcccCccCC
Confidence 844433 555 89999999999999999844 1122334556889998864
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=3.8e-16 Score=116.37 Aligned_cols=145 Identities=21% Similarity=0.210 Sum_probs=105.6
Q ss_pred CcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc-cccCCCCCCcEEEecCCCCCCcchhhcc
Q 042164 43 PMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRGSNIKQLPLEIGQ 121 (235)
Q Consensus 43 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 121 (235)
+..++.. +..+++|++|++++|.++.+| .+..+++|++|++++|.+..+ ..+..+++|++|++++|.++.+| .+..
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 3344444 578888999999988888887 788888999999999888877 55556688999999999888876 5778
Q ss_pred CCCCcEEcccCCcCCCCCch-hhhcCCCCCcEEEeccccccccccCCC--CCccchhcccCCCccceeeecCCCC
Q 042164 122 LTRLQLLDLSNCWSLEVIPP-NVISKLSRLEELYMDISFSQWDKVEGG--SNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
+++|++|++++|. +..++. ..+..+++|+++++++|.+.+...... .......+..+++|+.|| ++.+.
T Consensus 114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8899999999988 555544 347888999999999998863311000 001122367788888776 66554
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=2.5e-14 Score=114.72 Aligned_cols=213 Identities=11% Similarity=0.084 Sum_probs=145.7
Q ss_pred cCCCcEEecCCCCCC-CCCCcC-CCCCccEEEeccCCCCC-------------------cccchhhhhC--------CCC
Q 042164 6 RKGPIAISLPQRDIQ-ELPERL-QCPNLQLFLLFREGNGP-------------------MQISDHFFEG--------TEE 56 (235)
Q Consensus 6 ~~~l~~L~l~~~~l~-~i~~~~-~l~~L~~L~l~~~~~~~-------------------~~~~~~~~~~--------~~~ 56 (235)
+.++++|.++++--. .+.... .+++|+.|+| +.+... ..+++..|.+ +.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdL-s~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDI-SNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEE-EEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEec-CcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 446788888764210 111111 2888999999 444332 0467777888 999
Q ss_pred CcEEeecCccCCCCC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCC-------C-------------
Q 042164 57 LKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNI-------K------------- 113 (235)
Q Consensus 57 L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~-------~------------- 113 (235)
|+.|++.+ .++.++ ..|..|++|+.++++.|.+..+ .+|..+.++..+....+.. .
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 99999998 788776 4688999999999999988765 6666666666665544110 0
Q ss_pred -------Ccch---------------------------hh-ccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccc
Q 042164 114 -------QLPL---------------------------EI-GQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDIS 158 (235)
Q Consensus 114 -------~~~~---------------------------~~-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 158 (235)
.++. .+ ..+++|+.+++++|. +..++..++..|++|+++++..|
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc
Confidence 0000 00 137889999999887 77888888999999999999887
Q ss_pred cccccccCCCCCccchhcccCCCcc-ceeeecCCCCCCCccc--cccccceeEEEecccccccchhhhhhhhhccccCC
Q 042164 159 FSQWDKVEGGSNASLAELKGLSKLT-TLNIQVPDAQILPQEW--VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~p~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
++.+ ...+|.++++|+ .+++.. .++.++... .+++|+.+++. .+.. .......|.++++|+.+
T Consensus 261 -i~~I--------~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~-~n~i--~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 261 -LKTI--------GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT-GDKI--TTLGDELFGNGVPSKLI 326 (329)
T ss_dssp -CCEE--------CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC-SSCC--CEECTTTTCTTCCCCEE
T ss_pred -ccee--------hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC-CCcc--CccchhhhcCCcchhhh
Confidence 5533 456788889998 999988 777776554 77888888873 4444 22234578888888754
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=3e-13 Score=98.20 Aligned_cols=103 Identities=22% Similarity=0.339 Sum_probs=69.1
Q ss_pred CCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccC
Q 042164 56 ELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSN 132 (235)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 132 (235)
..+.++++++.++.+|..+ .++|++|++++|.+.++ ..++.+++|++|++++|.++.++.. +..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566777777777776544 36677777777777766 4566677777777777777766554 56677777777777
Q ss_pred CcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 133 CWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 133 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
|. +..+++..+..+++|+.|++++|.++
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 76 45555554666777777777777665
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=1.4e-14 Score=124.70 Aligned_cols=224 Identities=19% Similarity=0.104 Sum_probs=139.1
Q ss_pred cCCCcEEecCCCCC-C---CCCCc------------C-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCc-cC
Q 042164 6 RKGPIAISLPQRDI-Q---ELPER------------L-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGI-HF 67 (235)
Q Consensus 6 ~~~l~~L~l~~~~l-~---~i~~~------------~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~ 67 (235)
+++++.|+++++.. . -.|.. . .+++|+.|++ +.+......+..+...+++|++|++++| .+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L-~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRL-KRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEE-ESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEe-eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 57889999988752 2 11211 1 5789999999 6555444444443336889999999988 55
Q ss_pred CC--CChhhcCCccCcEEeccCcCCCCc------cccCCCCCCcEEEecCCC--CC--CcchhhccCCCCcEEcccCCcC
Q 042164 68 SS--LPSSLGRLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRGSN--IK--QLPLEIGQLTRLQLLDLSNCWS 135 (235)
Q Consensus 68 ~~--~~~~l~~l~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~~~--~~--~~~~~~~~l~~L~~L~l~~~~~ 135 (235)
+. ++..+..+++|++|++++|.+.+. .....+++|++|+++.+. ++ .++.....+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 53 455556789999999999886532 223367789999999886 32 2333345678999999998843
Q ss_pred CCCCchhhhcCCCCCcEEEeccccc-------ccc--------------cc-CCCCCccchhcccCCCccceeeecCCCC
Q 042164 136 LEVIPPNVISKLSRLEELYMDISFS-------QWD--------------KV-EGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 136 ~~~~~~~~l~~~~~L~~L~l~~n~~-------~~~--------------~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
.+.++. .+..+++|+++++..+.. .+. .. ..........+..+++|++|++++|.+.
T Consensus 224 ~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 224 LEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 444444 367778888887654421 000 00 0011122333446789999999999876
Q ss_pred C--CCccc-cccccceeEEEecccccccchhhhhhhhhccccCC
Q 042164 194 I--LPQEW-VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQGL 234 (235)
Q Consensus 194 ~--~p~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 234 (235)
. ++... .+++|+.|++..+ .. ..........+++|+.|
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~--~~-~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY--IE-DAGLEVLASTCKDLREL 343 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG--GH-HHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc--cC-HHHHHHHHHhCCCCCEE
Confidence 2 22222 7899999999643 21 11122233346666654
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=4.7e-13 Score=97.52 Aligned_cols=101 Identities=24% Similarity=0.423 Sum_probs=59.4
Q ss_pred cEEeecCccCCCCChhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCc
Q 042164 58 KVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCW 134 (235)
Q Consensus 58 ~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 134 (235)
+.++++++.++.+|..+. ++|++|++++|.+.++ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 556666666666665432 5666666666666655 4455666666666666666655543 4556666666666665
Q ss_pred CCCCCchhhhcCCCCCcEEEecccccc
Q 042164 135 SLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 135 ~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
+..++...+..+++|+.|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 44455444555666666666666554
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=1.1e-14 Score=125.40 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=21.6
Q ss_pred cCCCccceeeecCCCCC-CCccc--cccccceeEEE
Q 042164 178 GLSKLTTLNIQVPDAQI-LPQEW--VFVELQSYRIC 210 (235)
Q Consensus 178 ~~~~L~~L~l~~n~~~~-~p~~~--~~~~L~~l~l~ 210 (235)
.+++|+.|++.+|.+.. .+..+ .+++|+.|++.
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 46777777777777652 22222 47788888886
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=2.1e-12 Score=93.62 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=60.6
Q ss_pred CcEEecCCCCCCCCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChh-hcCCccCcEEeccC
Q 042164 9 PIAISLPQRDIQELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSS-LGRLINLQTLCLDW 87 (235)
Q Consensus 9 l~~L~l~~~~l~~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~ 87 (235)
.++++++++.++.+|..+ .++++.|++ .++.+..+++..|..+++|++|++++|.++.+++. |..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L--~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEc--CCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456677777776666554 366666666 44444444444456666666666666666665443 45666666666666
Q ss_pred cCCCCc--cccCCCCCCcEEEecCCCCC
Q 042164 88 CQLEDV--AAIGQLKKLEILSFRGSNIK 113 (235)
Q Consensus 88 ~~l~~~--~~~~~l~~L~~L~l~~~~~~ 113 (235)
|.+..+ ..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666655 33555666666666666554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=2.1e-12 Score=94.05 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=39.4
Q ss_pred CCCcEEeecCccCCCC-ChhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcc
Q 042164 55 EELKVLDFTGIHFSSL-PSSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDL 130 (235)
Q Consensus 55 ~~L~~L~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 130 (235)
..|++|++++|.++.+ |..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4444455555554443 23344455555555555554444 2234455555555555555544443 445555555555
Q ss_pred cCCc
Q 042164 131 SNCW 134 (235)
Q Consensus 131 ~~~~ 134 (235)
++|.
T Consensus 113 ~~N~ 116 (174)
T 2r9u_A 113 YNNP 116 (174)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5554
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=3.3e-12 Score=104.94 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=76.6
Q ss_pred CCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEecc
Q 042164 8 GPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLD 86 (235)
Q Consensus 8 ~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~ 86 (235)
+++.+.+..+ ++.|+... .-.+|+.+.+ .+ .+..++...|..+.+|+.+++.+|.++.++.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~l--p~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVF--PS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEEC--CT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEe--CC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 4556665543 55555444 2245777777 33 445566666777777777777777776665433335667777666
Q ss_pred CcCCCCc--cccCCCCCCcEEEecCCCCCCcchh-hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccc
Q 042164 87 WCQLEDV--AAIGQLKKLEILSFRGSNIKQLPLE-IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDIS 158 (235)
Q Consensus 87 ~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 158 (235)
.+ +..+ .+|..+++|+.+++..+ ++.++.. |.. .+|+.+.+..+ +..++..++..|++|+.+.+..+
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESS
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCc
Confidence 33 4444 55666666666666553 3333222 222 34444444322 33344444445555555554444
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=9.9e-12 Score=102.13 Aligned_cols=185 Identities=12% Similarity=0.196 Sum_probs=116.7
Q ss_pred CCCcEEecCCCCCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCCh-hhcCCccCcEEe
Q 042164 7 KGPIAISLPQRDIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLPS-SLGRLINLQTLC 84 (235)
Q Consensus 7 ~~l~~L~l~~~~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~ 84 (235)
.+|+.+++..+.++.++... .+.+|+.+.+ ..+ +..++...|..+.+|+.+++..+ ++.++. .|.. .+|+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l--p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLL--PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEEC--CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEe--CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 34555555555555555444 4455555555 222 44555555666666666666653 444432 3333 5666666
Q ss_pred ccCcCCCCc--cccCCCCCCcEEEecCCCCC-----Ccc-hhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEec
Q 042164 85 LDWCQLEDV--AAIGQLKKLEILSFRGSNIK-----QLP-LEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMD 156 (235)
Q Consensus 85 l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~-----~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 156 (235)
+. +.+..+ .+|..+++|+.+.+..+.+. .++ ..|..|++|+.+.+..+ +..++..++.+|.+|+.+.+.
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEEC
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEEC
Confidence 63 334444 66777888888888777654 344 34778888888888743 566776678888888888885
Q ss_pred cccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc--cc-cccceeEE
Q 042164 157 ISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW--VF-VELQSYRI 209 (235)
Q Consensus 157 ~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~--~~-~~L~~l~l 209 (235)
.+ ++.+ ...+|.++ +|+.+++++|....++... .+ .+++.+.+
T Consensus 332 ~~-l~~I--------~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 332 AN-VTQI--------NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp TT-CCEE--------CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred cc-ccEE--------cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 54 4422 35577788 8999999988877666554 44 35677777
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=8.5e-14 Score=113.35 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=76.2
Q ss_pred CCCcEEeecCccCCC--CChhhcCCccCcEEeccCcCCCCc--cc----c-CCCCCCcEEEecCCCCCC-----cchhhc
Q 042164 55 EELKVLDFTGIHFSS--LPSSLGRLINLQTLCLDWCQLEDV--AA----I-GQLKKLEILSFRGSNIKQ-----LPLEIG 120 (235)
Q Consensus 55 ~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~--~~----~-~~l~~L~~L~l~~~~~~~-----~~~~~~ 120 (235)
..|++|++++|.++. +......+++|++|++++|.+... .. + ...++|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 567777777776653 212223345677777777766532 22 2 235667777777776652 334445
Q ss_pred cCCCCcEEcccCCcCCCCCc----hhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 121 QLTRLQLLDLSNCWSLEVIP----PNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 121 ~l~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
.+++|++|++++|. ++... .+.+..+++|++|++++|.++.. ........+..+++|+.|+|++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~----g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT----AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH----HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH----HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 66677777777776 33221 12245566777777777766532 11122334445677777777777765
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=4.1e-13 Score=109.32 Aligned_cols=157 Identities=12% Similarity=0.021 Sum_probs=116.1
Q ss_pred ccCCCcEEecCCCCCCC-----CCCcC--CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCC-----Ch
Q 042164 5 IRKGPIAISLPQRDIQE-----LPERL--QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSL-----PS 72 (235)
Q Consensus 5 ~~~~l~~L~l~~~~l~~-----i~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~ 72 (235)
.++.++.|++++|.++. +.... ..++|+.|++ +.|.........++..+.+|+.|++++|.++.. ..
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~L-s~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNL-ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEEC-TTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEe-cCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 35789999999999873 22222 3479999999 555543333334445567899999999999742 22
Q ss_pred hh-cCCccCcEEeccCcCCCCc------cccCCCCCCcEEEecCCCCCC-----cchhhccCCCCcEEcccCCcCCCCCc
Q 042164 73 SL-GRLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRGSNIKQ-----LPLEIGQLTRLQLLDLSNCWSLEVIP 140 (235)
Q Consensus 73 ~l-~~l~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~ 140 (235)
.+ ...++|++|++++|.+... ..+...++|++|++++|.++. ++..+..+++|+.|++++|. ++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence 23 3578999999999998742 455788999999999999872 35567788899999999998 44332
Q ss_pred h----hhhcCCCCCcEEEecccccccc
Q 042164 141 P----NVISKLSRLEELYMDISFSQWD 163 (235)
Q Consensus 141 ~----~~l~~~~~L~~L~l~~n~~~~~ 163 (235)
. ..+..+++|++|++++|.++..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 1 2255678999999999998733
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=5.1e-11 Score=95.99 Aligned_cols=92 Identities=24% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCcccchhhhhCCCCCcEEeecC-ccCCCCC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcch
Q 042164 42 GPMQISDHFFEGTEELKVLDFTG-IHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPL 117 (235)
Q Consensus 42 ~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~ 117 (235)
.+..+|. +..+.+|++|+|++ |.++.++ ..|..+++|++|++++|.++++ ..|+.+++|++|++++|.++.+|.
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4555665 46666777777764 6666654 4566677777777777776655 456667777777777777766655
Q ss_pred hhccCCCCcEEcccCCcC
Q 042164 118 EIGQLTRLQLLDLSNCWS 135 (235)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~ 135 (235)
.+.....|+.|++.+|.+
T Consensus 98 ~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp TTTCSCCCCEEECCSSCC
T ss_pred HHcccCCceEEEeeCCCc
Confidence 432222377777776663
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=3e-10 Score=91.44 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=87.3
Q ss_pred cEEecCCC-CCCCCCCcC-CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEecc
Q 042164 10 IAISLPQR-DIQELPERL-QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLD 86 (235)
Q Consensus 10 ~~L~l~~~-~l~~i~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~ 86 (235)
..++++++ .+..||. + .+.+|+.|+| +.++.+..++...|..+.+|++|+|++|.++.++ ..|..+++|++|+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l-~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYI-ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEEC-CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEc-cCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 46799998 8999999 6 8899999999 4347788888777899999999999999999865 568999999999999
Q ss_pred CcCCCCc--cccCCCCCCcEEEecCCCCCC
Q 042164 87 WCQLEDV--AAIGQLKKLEILSFRGSNIKQ 114 (235)
Q Consensus 87 ~~~l~~~--~~~~~l~~L~~L~l~~~~~~~ 114 (235)
+|.+..+ ..+..+. |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999988 3444454 9999999999874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=1e-09 Score=88.81 Aligned_cols=138 Identities=18% Similarity=0.200 Sum_probs=71.1
Q ss_pred hhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCC--ccccC--CCCCCcEEEecCC--C------CCCcch
Q 042164 50 FFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLED--VAAIG--QLKKLEILSFRGS--N------IKQLPL 117 (235)
Q Consensus 50 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~--~l~~L~~L~l~~~--~------~~~~~~ 117 (235)
++..++.|+.|.++++.-..++. + .+++|++|++..|.+.. +..+. .+++|++|+++.+ . +..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34566777777776663123333 2 36677777777666552 23332 5667777776421 1 111112
Q ss_pred hh--ccCCCCcEEcccCCcCCCCCchhhh--cCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 118 EI--GQLTRLQLLDLSNCWSLEVIPPNVI--SKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 118 ~~--~~l~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
.+ ..+++|++|++++|.+.......+. ..+++|++|+++.|.+... ........+..+++|+.|++++|.+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~----G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE----GARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH----HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH----HHHHHHhhcccCCcceEEECCCCcCC
Confidence 22 2356777777776653222221111 2456677777777666522 00112223345667777777777654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=2.1e-09 Score=78.80 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=39.0
Q ss_pred hhCCCCCcEEeecCc-cCCC-----CChhhcCCccCcEEeccCcCCCCc------cccCCCCCCcEEEecCCCCCC----
Q 042164 51 FEGTEELKVLDFTGI-HFSS-----LPSSLGRLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRGSNIKQ---- 114 (235)
Q Consensus 51 ~~~~~~L~~L~l~~~-~~~~-----~~~~l~~l~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~~~~~~---- 114 (235)
+...+.|++|++++| .++. +...+...++|++|++++|.+..- ..+...++|++|++++|.++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345566666666666 5542 223344455566666666655421 333334455555555555541
Q ss_pred -cchhhccCCCCcEEcc
Q 042164 115 -LPLEIGQLTRLQLLDL 130 (235)
Q Consensus 115 -~~~~~~~l~~L~~L~l 130 (235)
+...+...++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 2233344444555554
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=6.8e-09 Score=76.08 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=84.7
Q ss_pred hhhcCCccCcEEeccCc-CCCC-----c-cccCCCCCCcEEEecCCCCC-----CcchhhccCCCCcEEcccCCcCCCCC
Q 042164 72 SSLGRLINLQTLCLDWC-QLED-----V-AAIGQLKKLEILSFRGSNIK-----QLPLEIGQLTRLQLLDLSNCWSLEVI 139 (235)
Q Consensus 72 ~~l~~l~~L~~L~l~~~-~l~~-----~-~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~ 139 (235)
..+...++|++|++++| .+.. + ..+...++|++|++++|.+. .+...+...++|++|++++|. ++..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 44667888999999998 7762 2 66677788999999999887 244556677889999999987 4432
Q ss_pred c----hhhhcCCCCCcEEEe--ccccccccccCCCCCccchhcccCCCccceeeecCCCC
Q 042164 140 P----PNVISKLSRLEELYM--DISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQ 193 (235)
Q Consensus 140 ~----~~~l~~~~~L~~L~l--~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 193 (235)
. .+.+...++|++|++ ++|.+... ........+...+.|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~----g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNN----VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHH----HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHH----HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 223667788999999 77888633 11224456667788999999998875
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=1.5e-08 Score=82.02 Aligned_cols=156 Identities=17% Similarity=0.048 Sum_probs=103.0
Q ss_pred hCCCCCcEEeecCccCC----------CCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCC-cchhhc
Q 042164 52 EGTEELKVLDFTGIHFS----------SLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQ-LPLEIG 120 (235)
Q Consensus 52 ~~~~~L~~L~l~~~~~~----------~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~ 120 (235)
..+++|+.|.+.+.... .+...+..+|+|+.|++++|.-..+..+. +++|++|++..+.+.. ....+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence 45789999988754331 24455678899999999887422333343 7899999999888762 222333
Q ss_pred --cCCCCcEEcccCC--cCCCC-----Cchhhh--cCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeec
Q 042164 121 --QLTRLQLLDLSNC--WSLEV-----IPPNVI--SKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQV 189 (235)
Q Consensus 121 --~l~~L~~L~l~~~--~~~~~-----~~~~~l--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 189 (235)
.+++|++|+++.+ ...+. +... + ..+++|+.|++.+|.+.... .........+++|+.|+|+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~~i~~~~-----~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDAEEQNVV-----VEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESCTTHHHH-----HHHHHHCSSGGGCSEEECCS
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCCCCchHH-----HHHHHhCccCCCCCEEECCC
Confidence 7899999998632 11111 1111 2 35789999999999886320 01122223578999999999
Q ss_pred CCCCC-----CCccc-cccccceeEEEecccc
Q 042164 190 PDAQI-----LPQEW-VFVELQSYRICIGNKW 215 (235)
Q Consensus 190 n~~~~-----~p~~~-~~~~L~~l~l~~~~~~ 215 (235)
|.+.. ++..+ .+++|+.|++. .+.+
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~-~n~i 319 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMK-YNYL 319 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECC-SBBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECC-CCcC
Confidence 99874 34433 67899999995 4433
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=8.1e-07 Score=72.68 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=42.8
Q ss_pred hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCcc
Q 042164 119 IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQE 198 (235)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~ 198 (235)
+.++..|+.+.+... ...++..++..|.+|+.+.+..+ ++.+ ...+|.++.+|+.+.+..+ ++.+...
T Consensus 284 F~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I--------~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQI--------LDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEE--------CTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEe--------hHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 334444444444321 33444555666666666666433 2211 2446667777777777543 5556554
Q ss_pred c--cccccceeEE
Q 042164 199 W--VFVELQSYRI 209 (235)
Q Consensus 199 ~--~~~~L~~l~l 209 (235)
. .|.+|+.+++
T Consensus 352 aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 352 AFSNCTALNNIEY 364 (394)
T ss_dssp GGTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEE
Confidence 3 6677777776
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.52 E-value=7.1e-07 Score=73.00 Aligned_cols=98 Identities=9% Similarity=0.109 Sum_probs=66.5
Q ss_pred hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCcc
Q 042164 119 IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQE 198 (235)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~ 198 (235)
+..+.+|+.+.+.++ ...++..++..|.+|+.+.+..+ ++.+ ...+|.++.+|+.+++..+ ++.+...
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I--------~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEI--------GKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEE--------CTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEE--------hHHhccCCCCCCEEEECcc-ccEehHH
Confidence 556667777776654 45566666888888888888643 4422 3567888999999999766 7666665
Q ss_pred c--cccccceeEEEecccccccchhhhhhhhhccccC
Q 042164 199 W--VFVELQSYRICIGNKWWSSWSVKSGLSRLMKLQG 233 (235)
Q Consensus 199 ~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~ 233 (235)
. .|.+|+.+++. .+.. .. ...+.++++|++
T Consensus 361 aF~~C~~L~~i~lp-~~~~--~~--~~~F~~c~~L~~ 392 (394)
T 4fs7_A 361 AFQGCINLKKVELP-KRLE--QY--RYDFEDTTKFKW 392 (394)
T ss_dssp TBTTCTTCCEEEEE-GGGG--GG--GGGBCTTCEEEE
T ss_pred HhhCCCCCCEEEEC-CCCE--Eh--hheecCCCCCcE
Confidence 4 77899999884 3222 11 246888888764
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=2e-06 Score=70.27 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=93.5
Q ss_pred chhhhhCCCCCcEEeecCccCCCCChhhcCCccCcEEeccCcCCCCccccCCCCCCcEEEecCCCCCCcch-hhccCCCC
Q 042164 47 SDHFFEGTEELKVLDFTGIHFSSLPSSLGRLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRGSNIKQLPL-EIGQLTRL 125 (235)
Q Consensus 47 ~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L 125 (235)
+...|..+..++.+.+..+...--...+..+..++.+......+.+ ..+..+.+|+.+.+..+ ++.++. +|.++.+|
T Consensus 245 ~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 245 GKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp CSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCC
Confidence 3334555566666666544222122345556666666554433221 45667788899888765 565544 48889999
Q ss_pred cEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccc-ccccc
Q 042164 126 QLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEW-VFVEL 204 (235)
Q Consensus 126 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~-~~~~L 204 (235)
+.+++..+ ...+...++.+|.+|+.+.+..+ ++.+ ...+|.++++|+.+++..+ +..+.... .+++|
T Consensus 323 ~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I--------~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L 390 (394)
T 4fs7_A 323 VSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKI--------GANAFQGCINLKKVELPKR-LEQYRYDFEDTTKF 390 (394)
T ss_dssp CEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEE--------CTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEE
T ss_pred CEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEe--------hHHHhhCCCCCCEEEECCC-CEEhhheecCCCCC
Confidence 99999764 66777777999999999998765 4422 3568889999999999764 33333322 44555
Q ss_pred ce
Q 042164 205 QS 206 (235)
Q Consensus 205 ~~ 206 (235)
+.
T Consensus 391 ~~ 392 (394)
T 4fs7_A 391 KW 392 (394)
T ss_dssp EE
T ss_pred cE
Confidence 44
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=4.1e-07 Score=70.23 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=40.6
Q ss_pred CCccCcEEeccCcCCCCcc----ccCCCCCCcEEEecCCCCCCcchhhccCC--CCcEEcccCCcCCCCCc------hhh
Q 042164 76 RLINLQTLCLDWCQLEDVA----AIGQLKKLEILSFRGSNIKQLPLEIGQLT--RLQLLDLSNCWSLEVIP------PNV 143 (235)
Q Consensus 76 ~l~~L~~L~l~~~~l~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~------~~~ 143 (235)
.+++|+.|++++|.+.++. .++.+++|+.|++++|.++.+. .+..+. +|++|++++|.+.+.++ ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4556666666666655442 2235566666666666665441 122222 66666666666443333 123
Q ss_pred hcCCCCCcEEE
Q 042164 144 ISKLSRLEELY 154 (235)
Q Consensus 144 l~~~~~L~~L~ 154 (235)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55566666654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=4.6e-07 Score=65.28 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=15.6
Q ss_pred cCcEEeccCcCCCC--ccccCCCCCCcEEEecCC
Q 042164 79 NLQTLCLDWCQLED--VAAIGQLKKLEILSFRGS 110 (235)
Q Consensus 79 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~ 110 (235)
+|+.+++++|.++. +..+..+++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 45555555555442 244444455555555544
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.31 E-value=3.9e-06 Score=68.57 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=75.8
Q ss_pred hhcCCccCcEEeccCcCCC-CccccCCCCCCcEEEecCCCCCCcch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCC
Q 042164 73 SLGRLINLQTLCLDWCQLE-DVAAIGQLKKLEILSFRGSNIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRL 150 (235)
Q Consensus 73 ~l~~l~~L~~L~l~~~~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 150 (235)
.|..+.+|+.+.+..+... +-.++..+..|+.+.+. +.++.++. .|..|.+|+.+.+..+ +..+...++.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCC
Confidence 4667777888777655432 22667777778887775 34555544 3777788888887654 455666667788888
Q ss_pred cEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCCccccccccceeEE
Q 042164 151 EELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILPQEWVFVELQSYRI 209 (235)
Q Consensus 151 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p~~~~~~~L~~l~l 209 (235)
+.+.+..+ ++.+ ...+|.++++|+.+++.++... +-....+.+|+.+.+
T Consensus 337 ~~i~ip~s-v~~I--------~~~aF~~C~~L~~i~~~~~~~~-~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 337 ERIAIPSS-VTKI--------PESAFSNCTALNNIEYSGSRSQ-WNAISTDSGLQNLPV 385 (394)
T ss_dssp CEEEECTT-CCBC--------CGGGGTTCTTCCEEEESSCHHH-HHTCBCCCCC-----
T ss_pred CEEEECcc-cCEE--------hHhHhhCCCCCCEEEECCceee-hhhhhccCCCCEEEe
Confidence 88887543 4322 3557777888888888776432 111125566776666
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=2.7e-06 Score=65.61 Aligned_cols=110 Identities=20% Similarity=0.143 Sum_probs=71.7
Q ss_pred hcCCccCcE--EeccCcCCCCc----c-ccCCCCCCcEEEecCCCCCCcc---hhhccCCCCcEEcccCCcCCCCCch-h
Q 042164 74 LGRLINLQT--LCLDWCQLEDV----A-AIGQLKKLEILSFRGSNIKQLP---LEIGQLTRLQLLDLSNCWSLEVIPP-N 142 (235)
Q Consensus 74 l~~l~~L~~--L~l~~~~l~~~----~-~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~-~ 142 (235)
+...+.|.. ++++.|....+ . ....+++|+.|++++|.++.++ ..+..+++|+.|++++|. +..+.. .
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhh
Confidence 444455554 55666653322 1 1246789999999999998654 556789999999999998 444421 1
Q ss_pred hhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCcccee
Q 042164 143 VISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLN 186 (235)
Q Consensus 143 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 186 (235)
.+..+ +|++|++++|.+.+.. +.........+..+|+|+.||
T Consensus 216 ~l~~l-~L~~L~L~~Npl~~~~-~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGL-KLEELWLDGNSLCDTF-RDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTS-CCSEEECTTSTTGGGC-SSHHHHHHHHHHHCTTCCEES
T ss_pred hcccC-CcceEEccCCcCcccc-CcchhHHHHHHHHCcccCeEC
Confidence 23334 8999999999987320 000011234677889999876
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=2.2e-06 Score=61.74 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=15.1
Q ss_pred CCcEEEecCCCCCCc-chhhccCCCCcEEcccCCc
Q 042164 101 KLEILSFRGSNIKQL-PLEIGQLTRLQLLDLSNCW 134 (235)
Q Consensus 101 ~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~ 134 (235)
.|+.||++++.++.. -..+..+++|++|++++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 345555555544411 1223444555555555543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.06 E-value=5.9e-05 Score=61.12 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=81.0
Q ss_pred hhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCcEEEecCCCCCCcch-hhccCCC
Q 042164 49 HFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRGSNIKQLPL-EIGQLTR 124 (235)
Q Consensus 49 ~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~ 124 (235)
..|..+..++.+.+..+ +..++ ..+..+..|+.+.+..+ +..+ .++..+.+++.+.+..+ +..++. .|..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 33556677777766544 33332 34566777777777654 4444 56666777777777543 444443 3667777
Q ss_pred CcEEcccCCcCCCCCchhhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCCCCCC
Q 042164 125 LQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDAQILP 196 (235)
Q Consensus 125 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~p 196 (235)
|+.+.+.++. +..++..++.+|.+|+.+.+..+ ++.+ ...+|.++++|+.+.+..+ ++.+.
T Consensus 288 L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I--------~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 288 LTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTI--------QVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp CCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEE--------CTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred cccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEE--------HHHHhhCCCCCCEEEECCc-cCEEc
Confidence 7777776665 55566666777777777777543 3322 2456677777777776543 44443
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.00 E-value=5.9e-05 Score=61.12 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=95.9
Q ss_pred CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccCCCCC-hhhcCCccCcEEeccCcCCCCc--cccCCCCCCc
Q 042164 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHFSSLP-SSLGRLINLQTLCLDWCQLEDV--AAIGQLKKLE 103 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~ 103 (235)
.+.+++.+.+ ... +..++...|..+..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +..+ ..+..+.+|+
T Consensus 215 ~~~~l~~i~~--~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITI--TSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEEC--CTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccceeee--ccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 6788888887 333 34566666788999999999765 55554 45778889999988654 4444 7788899999
Q ss_pred EEEecCCCCCCcch-hhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEeccc
Q 042164 104 ILSFRGSNIKQLPL-EIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDIS 158 (235)
Q Consensus 104 ~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 158 (235)
.+.+..+.++.++. .|.+|.+|+.+.+..+ ...+...++.+|.+|+.+.+..+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc
Confidence 99998888887754 4888999999999764 56677777899999999888654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=6.2e-05 Score=55.15 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=40.1
Q ss_pred hCCCCCcEEeecCc-cCCC-----CChhhcCCccCcEEeccCcCCCCc------cccCCCCCCcEEEecCCCCC-----C
Q 042164 52 EGTEELKVLDFTGI-HFSS-----LPSSLGRLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRGSNIK-----Q 114 (235)
Q Consensus 52 ~~~~~L~~L~l~~~-~~~~-----~~~~l~~l~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~~~~~-----~ 114 (235)
..-+.|++|+|+++ .+.. +...+..-+.|+.|++++|.+... ..+..-++|++|+++.|.++ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666653 5541 223344455566666666665521 33334455555555555554 1
Q ss_pred cchhhccCCCCcEEcccC
Q 042164 115 LPLEIGQLTRLQLLDLSN 132 (235)
Q Consensus 115 ~~~~~~~l~~L~~L~l~~ 132 (235)
+...+.....|++|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 223333444455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.68 E-value=3.2e-05 Score=56.70 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=72.0
Q ss_pred hcCCccCcEEeccCc-CCCC-----c-cccCCCCCCcEEEecCCCCC-----CcchhhccCCCCcEEcccCCcCCCCCch
Q 042164 74 LGRLINLQTLCLDWC-QLED-----V-AAIGQLKKLEILSFRGSNIK-----QLPLEIGQLTRLQLLDLSNCWSLEVIPP 141 (235)
Q Consensus 74 l~~l~~L~~L~l~~~-~l~~-----~-~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 141 (235)
+..-+.|+.|+++++ .+.. + ..+..-.+|+.|++++|.+. .+...+...+.|++|+++.|. ++.-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHH
Confidence 344567888888875 6652 2 66667778888888888887 344556667788888888887 443221
Q ss_pred ----hhhcCCCCCcEEEeccccccccccCCCCCccchhcccCCCccceeeecCCC
Q 042164 142 ----NVISKLSRLEELYMDISFSQWDKVEGGSNASLAELKGLSKLTTLNIQVPDA 192 (235)
Q Consensus 142 ----~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 192 (235)
+++..-+.|++|+++++..... .......+...+...+.|+.|+++.|..
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~i-g~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVL-GNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCC-CHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCc-CHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2255566788888875432100 0001113445566667777777766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.15 E-value=0.0011 Score=45.27 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=24.9
Q ss_pred EEecCCCCCC--CCCCcCCCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecCccC
Q 042164 11 AISLPQRDIQ--ELPERLQCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTGIHF 67 (235)
Q Consensus 11 ~L~l~~~~l~--~i~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 67 (235)
+++.+++.++ .+|..+ .++++.|+| .++.+..++...|..++.|+.|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~L--s~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVL--TGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEEC--TTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEEC--CCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 555432 233444454 33444444444444444444444444433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.00 E-value=0.0014 Score=44.69 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=31.9
Q ss_pred EEEecCCCCC--CcchhhccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEecccccc
Q 042164 104 ILSFRGSNIK--QLPLEIGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYMDISFSQ 161 (235)
Q Consensus 104 ~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 161 (235)
.++.+++.++ .+|..+ .++|++|++++|. +..++..++..+++|+.|++++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 4555555555 555432 2356666666665 55566555666666666666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.39 E-value=3.4 Score=26.22 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=14.2
Q ss_pred hccCCCCcEEcccCCcCCCCCchhhhcCCCCCcEEEe
Q 042164 119 IGQLTRLQLLDLSNCWSLEVIPPNVISKLSRLEELYM 155 (235)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 155 (235)
|..|.+|+.+.+-.+ ...+...+|..|.+|+.+.+
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEE
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEE
Confidence 334444444444332 23333333444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.92 E-value=8.4 Score=24.33 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=16.3
Q ss_pred CCCCccEEEeccCCCCCcccchhhhhCCCCCcEEeecC
Q 042164 27 QCPNLQLFLLFREGNGPMQISDHFFEGTEELKVLDFTG 64 (235)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 64 (235)
+|.+|+.+.+ ... +..+....|..|.+|+.+.+..
T Consensus 18 ~c~~L~~i~i--P~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITV--QPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEE--CTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEc--CCc-hheEcHHHHhccCCccEEEEcC
Confidence 4555555555 222 2234444455555555555543
Done!