Your job contains 1 sequence.
>042165
MATESPIRMSETSGKWPALKKAAAFAHSSASMAAEELGLLQKGCDVHGSVQRAVPNRSGS
APPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLN
PRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVD
RKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSN
GVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSNDTDIWTKDEVLD
RDISHSDISVIISNMKDFNTGHSNLGNQKNQAQLNVHSQVSSSSQVENAHSQVSSLGLIG
THIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYSPQY
GVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQPSGVSTGGSVVHGSDMQYLN
KIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGS
DMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNPPNMGMFVYPSSPLASPALPGSPVV
GTGLLGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGH
IVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPA
QRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNH
VIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILD
NVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGP
AERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKY
TYGKHIVARFEMLIGEENQTSES
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042165
(983 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 1393 3.0e-195 4
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 1328 1.4e-135 1
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 1187 3.7e-131 2
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 1182 1.1e-129 2
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 1142 1.7e-127 3
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 1191 4.6e-121 1
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 1011 7.3e-105 2
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 1010 7.3e-105 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 1010 9.4e-105 2
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 1010 1.2e-104 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 1006 3.2e-104 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 1006 3.2e-104 2
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 1002 8.3e-104 2
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 999 1.1e-103 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 998 2.2e-103 2
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 951 2.2e-103 2
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 990 2.8e-103 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 988 4.6e-103 2
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 988 4.6e-103 2
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 987 7.4e-103 2
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 987 7.4e-103 2
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 987 7.4e-103 2
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 981 2.5e-102 2
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 979 4.1e-102 2
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 979 4.1e-102 2
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 987 6.6e-102 2
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 978 6.6e-102 2
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 978 6.6e-102 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 978 6.6e-102 2
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 978 6.6e-102 2
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 978 6.6e-102 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 976 8.4e-102 2
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 981 1.1e-101 3
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 956 1.2e-98 2
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 863 2.7e-90 2
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 873 2.4e-89 2
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 769 2.0e-79 2
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 731 7.5e-76 2
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 724 6.7e-75 2
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 682 6.4e-74 4
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 696 1.3e-68 1
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 537 2.5e-57 3
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 552 5.6e-54 3
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 526 5.6e-52 2
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 539 3.1e-51 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 486 6.2e-47 2
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 494 8.5e-47 2
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 487 1.4e-45 1
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 458 1.9e-42 1
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 451 3.6e-40 2
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 434 7.3e-40 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 434 7.3e-40 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 448 9.0e-39 2
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 417 5.0e-38 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 417 5.0e-38 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 406 9.9e-36 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 391 3.1e-35 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 388 7.1e-33 2
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 359 8.0e-30 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 357 7.5e-28 2
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 301 1.3e-23 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 301 1.3e-23 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 310 1.2e-22 2
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 298 1.5e-22 2
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 285 7.2e-22 1
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 285 7.2e-22 1
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 252 2.6e-18 3
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 238 2.4e-16 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 234 6.2e-16 1
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 234 6.2e-16 1
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 232 7.3e-16 1
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 222 1.0e-14 1
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 209 2.3e-13 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 186 2.2e-11 1
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 180 2.8e-11 2
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 189 5.5e-11 1
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 196 4.4e-10 2
WB|WBGene00004240 - symbol:puf-4 species:6239 "Caenorhabd... 179 1.8e-09 2
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 171 2.8e-09 1
MGI|MGI:106253 - symbol:D19Bwg1357e "DNA segment, Chr 19,... 171 4.7e-09 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 163 8.7e-09 1
RGD|1564753 - symbol:LOC499339 "hypothetical protein LOC4... 164 2.7e-08 1
UNIPROTKB|Q15397 - symbol:KIAA0020 "Pumilio domain-contai... 163 3.5e-08 1
UNIPROTKB|F1SJG9 - symbol:LOC100152831 "Uncharacterized p... 162 4.5e-08 1
UNIPROTKB|H0YDQ6 - symbol:PUM1 "Pumilio homolog 1" specie... 136 6.2e-08 1
ZFIN|ZDB-GENE-030131-9808 - symbol:si:ch211-241o7.5 "si:c... 158 1.1e-07 1
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 157 1.2e-07 2
UNIPROTKB|A2VDN9 - symbol:KIAA0020 "Uncharacterized prote... 157 1.6e-07 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 151 1.9e-07 1
SGD|S000006246 - symbol:PUF2 "Member of the PUF protein f... 149 4.7e-07 2
TAIR|locus:2086760 - symbol:PUM24 "pumilio 24" species:37... 152 5.3e-07 1
UNIPROTKB|E1C1R5 - symbol:KIAA0020 "Uncharacterized prote... 158 7.3e-07 2
SGD|S000002904 - symbol:PUF6 "Pumilio-homology domain pro... 150 3.5e-06 2
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 141 5.5e-06 1
UNIPROTKB|E2RBF2 - symbol:KIAA0020 "Uncharacterized prote... 147 5.6e-06 2
FB|FBgn0015527 - symbol:pen "penguin" species:7227 "Droso... 130 0.00015 1
CGD|CAL0005913 - symbol:orf19.3547 species:5476 "Candida ... 135 0.00023 2
POMBASE|SPCP1E11.11 - symbol:puf6 "Puf family RNA-binding... 129 0.00035 2
UNIPROTKB|F1NWW8 - symbol:KIAA0020 "Uncharacterized prote... 132 0.00038 2
SGD|S000003851 - symbol:JSN1 "Member of the Puf family of... 137 0.00077 2
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 1393 (495.4 bits), Expect = 3.0e-195, Sum P(4) = 3.0e-195
Identities = 264/367 (71%), Positives = 306/367 (83%)
Query: 615 PVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFI 674
P Y GWQ Q E N P++CNFLEELKSGKGRRF+LSDITGHIVEFSADQHGSRFI
Sbjct: 491 PYVEAYPGWQPQGSLEGANGPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFI 550
Query: 675 QQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQIL 734
QQKLENC +EKA+VF+EILPHA KLMTDVFGNYVIQKFFEYG+ QRKELA+QL+GQI+
Sbjct: 551 QQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIV 610
Query: 735 PLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKI 794
PLS+QMYGCRVIQKAL+ IE +Q+ +L RELDGQVMRCVRDQNGNHVIQKCIE IP +K+
Sbjct: 611 PLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKV 670
Query: 795 GFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYV 854
GF++ AF GQV++LSMHPYGCRVIQR+LE C+ HQC+FI +EIL++VC L++DQYGNYV
Sbjct: 671 GFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYV 730
Query: 855 TQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHN 914
TQHVL++G ER +I RKLSGHIVQLS HKFASNVIEKCL YGG ER+LII+EI G +
Sbjct: 731 TQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPD 790
Query: 915 EE--TLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEM 972
E +LL MMKDQ+ NYVVQKIFE + Q+ + SR+R HA LKKYTYGKHIV+R E
Sbjct: 791 ESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIVSRLEQ 850
Query: 973 LIGEENQ 979
EENQ
Sbjct: 851 PSIEENQ 857
Score = 281 (104.0 bits), Expect = 3.0e-195, Sum P(4) = 3.0e-195
Identities = 70/162 (43%), Positives = 92/162 (56%)
Query: 351 SQVSSLGLIGTHIGMDQFHHG-PSRPSTAVQPVVQSSGFTPPL-Y-ASAAAYMASPNPFY 407
S + S G+ IG QFH+G P + S QPV+QSSGFTPPL Y A+ AYM SP Y
Sbjct: 271 SNMGSHGVNDAVIGAGQFHYGQPYKFSGDGQPVLQSSGFTPPLLYTATQTAYMTSPAHVY 330
Query: 408 SNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHPQPXXXXXX 467
N+Q+P YSPQYG G Y +++ P + GYP HG + +V+ P F PQ
Sbjct: 331 -NMQSPAVYSPQYGYGPY---TNMIPQFMPGYPSHGSVPVVVS----PDFIPQ-LSGPSA 381
Query: 468 XXXXXXXDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGE 509
+MQY K+Y G QPSF +P+++QY QQ FG+
Sbjct: 382 GSVVHGGEMQYAEKLYVPPG---QPSFPDPMYMQYCQQSFGQ 420
Score = 227 (85.0 bits), Expect = 3.0e-195, Sum P(4) = 3.0e-195
Identities = 70/226 (30%), Positives = 113/226 (50%)
Query: 53 AVPNRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKY 112
+VPNRSGSAPPNMEGSFLA++NL++R+ S NL + +++ L
Sbjct: 23 SVPNRSGSAPPNMEGSFLAVDNLLSRQGGSVYNNLMLPRYGFEEPVTTH--PSSKHSLNR 80
Query: 113 YGSNVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPK 172
S P + +D+ + RF + +GL N N +H+SQ LSTHKE SED+ S +
Sbjct: 81 IPSPPIYYPTEYQFIDNRVGRFRSNQGL----NKVNSPIHLSQGKLSTHKEVSEDESSQQ 136
Query: 173 HFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHS----FGYSDS 228
+ + DR +G ++++ +++L D +Q+D +P +++S+S +D
Sbjct: 137 LSVNSVSDRTDGL-----DIRLSPGSQSLADFRQDDTSSGQTPQHSRSNSSNGEVNTADE 191
Query: 229 SS----LRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSH 270
S L D V+ N ST + G D ST + S++
Sbjct: 192 SGNFSELSDDVVVKDNAASTARAS--IGNEKSPDESTIISKMKSTN 235
Score = 54 (24.1 bits), Expect = 2.4e-171, Sum P(4) = 2.4e-171
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 405 PFYSNVQAPG----FYS--PQYGVGGYVMNSSIGPPLVAGYPPH 442
P SN+ PG +Y P G+ + + +GPPL G+ P+
Sbjct: 449 PSNSNMARPGMGVNYYGIQPNMGIMVQYLPTHLGPPLSPGHVPY 492
Score = 41 (19.5 bits), Expect = 3.0e-195, Sum P(4) = 3.0e-195
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 1 MATESPIRMS 10
MATE+PIR+S
Sbjct: 1 MATENPIRIS 10
Score = 39 (18.8 bits), Expect = 4.3e-147, Sum P(3) = 4.3e-147
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 514 SGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHM 573
SG F L V + ++ G++ + + +S P T+K P +
Sbjct: 192 SGNFSELSDDVVVKDNAASTARASIGNEKSPDESTIISKMKSTNISGPGTAKYPREPRY- 250
Query: 574 GNP 576
G P
Sbjct: 251 GQP 253
Score = 37 (18.1 bits), Expect = 1.4e-169, Sum P(4) = 1.4e-169
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 477 QYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEP-LGSKG 524
Q N + Q G ++ N + Q +G+ Y SG +P L S G
Sbjct: 260 QQNNATWIQGGSNMGSHGVNDAVIGAGQFHYGQPYKFSGDGQPVLQSSG 308
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
Identities = 301/606 (49%), Positives = 381/606 (62%)
Query: 402 SPNPFYSNVQA-----PGFYSPQYGVGG-YVMNSSIGPPLVAGYPPHGGIA-MVLDGSAG 454
+P P Y++ A FY + G +V + G GYPP GI + G
Sbjct: 379 APPPMYTSTAAYMTSLSPFYHQNFQSSGMFVPQYNYG-----GYPPASGIVPQYMSGY-- 431
Query: 455 PSFHPQ-PXXXXXXXXXXXXXDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNI 513
PS P + + L + G ++ PS +P LQY+QQ +AY
Sbjct: 432 PSHEATVPMPYDISSTSSGYNNPRLLPGVSSS-GQNI-PSLVDPFQLQYFQQAQVDAY-- 487
Query: 514 SGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHM 573
+ F+ S T+S K D A H +P SP HM
Sbjct: 488 APPFQ----------SSTDSFGQK---DQQAVGYMA-NHEPLNSPLSPGYG--LQSPRHM 531
Query: 574 GN----PPNMGMFVYXXXXXXXXXXXXXXVVGTGLL---GGRNEMRF---SPVSNR--Y- 620
GN PP + + VG G++ G R+E R+ P N Y
Sbjct: 532 GNYFAVPPGVRVMPQYPGSPLASPVMPSSPVG-GMMSHFGRRSETRYHQQGPSRNTGIYP 590
Query: 621 SGWQGQRGFES--YNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKL 678
GWQG RG S +D K +FL+ELKS R+ ELSDI G +VEFS DQHGSRFIQQKL
Sbjct: 591 GGWQGNRGGASSIVDDLKRHSFLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKL 650
Query: 679 ENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSM 738
E+CS +EKASVF E+LP ASKLMTDVFGNYVIQKF E+G+PAQR+EL QL GQ++ LS+
Sbjct: 651 EHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSL 710
Query: 739 QMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFII 798
QMYGCRVIQKALE I+++QK +L+RELDG V++CVRDQNGNHVIQKCIE +P +IGF+I
Sbjct: 711 QMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVI 770
Query: 799 SAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHV 858
+AF GQVA LS HPYGCRVIQR+LEHC+D + I+DEIL++ ALA DQYGNYVTQHV
Sbjct: 771 AAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHV 830
Query: 859 LQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEET- 917
L+RGKP ER +II KL+G++VQ+SQHK+ASNV+EKCL + ERE +IEEI+G +EE
Sbjct: 831 LERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDN 890
Query: 918 -LLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGE 976
LL MMKDQFANYVVQK+ E+S + Q+ +++ R++ H L+KYTYGKHIVARFE L GE
Sbjct: 891 HLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVARFEQLFGE 950
Query: 977 ENQTSE 982
E++ SE
Sbjct: 951 ESEVSE 956
Score = 416 (151.5 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 170/594 (28%), Positives = 248/594 (41%)
Query: 3 TESPIRMSETSGXXXXXXXXXXXXXXXXXXXXEELGLLQKGCDVHGSVQRA-VPNRSGSA 61
T+S +RM E E+LG L K + Q P+RS SA
Sbjct: 4 TQSAMRMVEGDHIKNWQASSDSGIFGSLDMAVEDLGFLMKRNRLDSGDQTGKFPSRSESA 63
Query: 62 PPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLNP 121
PP+MEGSF A+ NL+ ++ SS L+ I N +SEE ++++ + YY SN+NLNP
Sbjct: 64 PPSMEGSFAALRNLLKQQEGSSSEVLSRA---IENYDSEEEIRSDPAYVAYYLSNINLNP 120
Query: 122 RLP-----RHLDHDLNRFG--NRRGLTSLDNSS-NCSVHVSQVTLSTHKEESEDDRSPKH 173
RLP R H L FG N+ TS DN S+H S+ LSTH+EE ED+ S
Sbjct: 121 RLPPPLISRENQHLLRHFGDNNQSPTTSWDNMGIRSSLHSSRTALSTHREEPEDEAS--- 177
Query: 174 FSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRD 233
S E + + S +AG+ +++ D+ QEDFP + S V+ + HS G + +D
Sbjct: 178 -SGE----QQSYAS------LAGRRKSIADMIQEDFPLTLSSVFKRPHSAG--NRPIAQD 224
Query: 234 PSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSND-TDI 292
ISS+ +++ A S V+ S S D A S P T ++ S T+
Sbjct: 225 IHAISSD--TSSEHARRLPESDINSVNLLRETDSLSSD--AIASEDPFTTDLASQSFTNA 280
Query: 293 WTKDEVLXXXXXXXXXXXXXXNMKDFNTGHSNLGNQKNQA----QLNVHXXXXXXXXXEN 348
T+ + NQ++Q ++ +
Sbjct: 281 QTERLNARQASHEDNNLSVFGASPPSSVASRMRRNQEDQQSQGRRMPPQYTPSSYQVQAS 340
Query: 349 AHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSS-GFTPP-LYASAAAYMASPNPF 406
+ Q+S + GT D P + V QS G PP +Y S AAYM S +PF
Sbjct: 341 SPQQMSYPRIGGTQ---DMMQSLPKIATGEVHSTFQSPHGLAPPPMYTSTAAYMTSLSPF 397
Query: 407 Y-SNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGG-IAMVLDGSAGPSFHPQPXXX 464
Y N Q+ G + PQY GGY S I P ++GYP H + M D S+ S + P
Sbjct: 398 YHQNFQSSGMFVPQYNYGGYPPASGIVPQYMSGYPSHEATVPMPYDISSTSSGYNNPRLL 457
Query: 465 XXXXXXXXXXDMQYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYN--ISGQFEPLGS 522
GQ ++ PS +P LQY+QQ +AY + G
Sbjct: 458 PGVSSS-------------GQ---NI-PSLVDPFQLQYFQQAQVDAYAPPFQSSTDSFGQ 500
Query: 523 KGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNP 576
K + +HE +Q+ +H + P V V P + G+P
Sbjct: 501 KDQQAVGYMANHEPLNSPLSPGYGLQSPRHMGNYFAVPPG---VRVMPQYPGSP 551
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 1187 (422.9 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
Identities = 228/383 (59%), Positives = 284/383 (74%)
Query: 607 GRNEMRFSPVSNRYSGW-QGQRGFESYNDPKI-CNFLEELKSGKGRRFELSDITGHIVEF 664
G MR+ + Y+G G ++ D + LEE KS K R FEL++I GH+VEF
Sbjct: 583 GEVNMRYPSATRNYAGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELAEIAGHVVEF 642
Query: 665 SADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKE 724
S+DQ+GSRFIQQKLE + DEK V++EI+PHA LMTDVFGNYVIQKFFE+G P QR+E
Sbjct: 643 SSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRE 702
Query: 725 LANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQK 784
LA++L +LPLS+QMYGCRVIQKA+E ++++QK ++V+ELDG VMRCVRDQNGNHV+QK
Sbjct: 703 LADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQK 762
Query: 785 CIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCA 844
CIEC+P E I FIIS F G V LS HPYGCRVIQRVLEHC D ++DEI+ +
Sbjct: 763 CIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISM 822
Query: 845 LAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERE 904
LAQDQYGNYV QHVL+ GKP ER+ II++L+G IVQ+SQ KFASNV+EKCL +GGP ERE
Sbjct: 823 LAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERE 882
Query: 905 LIIEEILGHNEET--LLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTY 962
++ E+LG +E L MMKDQFANYVVQK+ E + Q+ ++L RI+ H + LKKYTY
Sbjct: 883 FLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTY 942
Query: 963 GKHIVARFEMLI--GEENQTSES 983
GKHIVAR E L+ GE +S
Sbjct: 943 GKHIVARVEKLVAAGERRMALQS 965
Score = 299 (110.3 bits), Expect = 9.2e-30, Sum P(2) = 9.2e-30
Identities = 76/273 (27%), Positives = 148/273 (54%)
Query: 650 RRFELSD-ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNY 708
+R EL+D + +++ S +G R IQ+ +E +D+K + KE+ H + + D GN+
Sbjct: 699 QRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNH 758
Query: 709 VIQKFFEYGSPAQRKE-LANQLVGQILPLSMQMYGCRVIQKALETI-EIEQKAQLVRELD 766
V+QK E P + E + + G ++ LS YGCRVIQ+ LE + + +++++ E+
Sbjct: 759 VVQKCIEC-VPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIM 817
Query: 767 GQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA 826
+ +DQ GN+VIQ +E P++ II G++ +S + V+++ L
Sbjct: 818 STISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGG 877
Query: 827 DKHQCQFIVDEIL----DN--VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+ + +F+V+E+L +N + A+ +DQ+ NYV Q VL+ +R I+ ++ H+
Sbjct: 878 PEER-EFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNA 936
Query: 881 LSQHKFASNVI---EKCLAYGGPAERELIIEEI 910
L ++ + +++ EK +A G ER + ++ +
Sbjct: 937 LKKYTYGKHIVARVEKLVAAG---ERRMALQSL 966
Score = 206 (77.6 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 55/230 (23%), Positives = 118/230 (51%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKAS-VFKEILPHASKLMTDVFGNYVIQK 712
+ ++ GH++ DQ+G+ +Q+ +E C +E + + L T +G VIQ+
Sbjct: 740 VKELDGHVMRCVRDQNGNHVVQKCIE-CVPEENIEFIISTFFGNVVTLSTHPYGCRVIQR 798
Query: 713 FFEY-GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMR 771
E+ P + ++ ++++ I L+ YG VIQ LE + +++ +++EL G++++
Sbjct: 799 VLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQ 858
Query: 772 CVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ------VAALSMHPYGCRVIQRVLEHC 825
+ + ++V++KC+ PE+ F+++ G + A+ + V+Q+VLE C
Sbjct: 859 MSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETC 918
Query: 826 ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLS 875
D+ Q + I+ I ++ AL + YG ++ V + ER ++ L+
Sbjct: 919 DDQ-QRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLT 967
Score = 206 (77.6 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 67/259 (25%), Positives = 116/259 (44%)
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQK-AQLVRELDGQVMRCV 773
+YGSP + L +LP S+ + C +++ E+ + R G VM
Sbjct: 550 DYGSPTFGSYPGSPLAHHLLPNSL-VSPCSPMRRG----EVNMRYPSATRNYAGGVMGSW 604
Query: 774 R-DQNGNHVI-QKCIECIPPEKI-GFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQ 830
D + + +E K GF ++ G V S YG R IQ+ LE A +
Sbjct: 605 HMDASLDEGFGSSMLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLE-TATSDE 663
Query: 831 CQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNV 890
+ +EI+ + AL D +GNYV Q + G P +R ++ KL +++ LS + V
Sbjct: 664 KNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRV 723
Query: 891 IEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRI 950
I+K + ++ +++E+ GH ++ ++DQ N+VVQK E E ++S
Sbjct: 724 IQKAIEVVDLDQKIKMVKELDGH----VMRCVRDQNGNHVVQKCIECVPEENIEFIISTF 779
Query: 951 RTHAHVLKKYTYGKHIVAR 969
+ L + YG ++ R
Sbjct: 780 FGNVVTLSTHPYGCRVIQR 798
Score = 120 (47.3 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
Identities = 104/470 (22%), Positives = 161/470 (34%)
Query: 57 RSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSE---SEERLQANQTCLKYY 113
RSGSAPP ++GS A L S G F G + + +E + + L YY
Sbjct: 52 RSGSAPPTVDGSVSAAGGLF---SGGGGAPFLEFGGGNKGNGFGGDDEEFRKDPAYLSYY 108
Query: 114 GSNVNLNPRLPRHL--DHDLNRFGNRRGLTSLDNS--SNCSVHVSQVTLSTHKEESEDDR 169
+N+ LNPRLP L DL +G +++ V+ SQ S D R
Sbjct: 109 YANMKLNPRLPPPLMSREDLRVAQRLKGSSNVLGGVGDRRKVNDSQSLFSM--PPGFDQR 166
Query: 170 SPKHFSDEMVDRK------NGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSF 223
F E NG G + + G+ ++ DI Q D PV Q
Sbjct: 167 KQHEFEVEKTSASSSEWDANGLI-GLPGLGIGGKQKSFADIFQADMGHGH-PVTKQPSR- 223
Query: 224 GYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTE 283
S + D +V S N +S + + G+ + S A + SS + + TP +
Sbjct: 224 --PASRNTFDENVDSKNNLSPSA---SQGIGAPSPYSYAAVLGSS-----LSRNGTPDPQ 273
Query: 284 EVTSNDTDIWTKDEVLXXXXXXXXXXXXXXNMKDFNTG---HSNLGNQKNQAQLNVHXXX 340
+ + T + N FN G S+L N + L+
Sbjct: 274 AIARVPSPCLTP---IGSGRVSSNDKRNTSNQSPFNGGLNESSDLVNALSGMNLSGSGGL 330
Query: 341 XXXXXXENAHSQVSS--LGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAA 398
E +V + GL G H ++Q HG S Q + A +
Sbjct: 331 DERGQAEQDVEKVRNYMFGLQGGHNEVNQ--HGFPNKSDQAQKATGLLRNSQLRGAQGST 388
Query: 399 YMASPNPF--YSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPP---HGGIAMVLDGSA 453
Y Y ++ +P + YG+ V + Y P + A + S
Sbjct: 389 YNDGGGVATQYQHLDSPNYCLNNYGLNPAVASMMANQLGTNNYSPVYENASAASAMGFSG 448
Query: 454 GPS-FHPQPXXXXXXXXXXXXXDMQYLNKIYGQFGFSLQPSFANPLHLQY 502
S H ++ N++ G G LQ A+P++ QY
Sbjct: 449 MDSRLHGGGYVSSGQNLSESRNLGRFSNRMMGG-GTGLQSHMADPMYHQY 497
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 1182 (421.1 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 228/383 (59%), Positives = 283/383 (73%)
Query: 607 GRNEMRFSPVSNRYSGW-QGQRGFESYNDPKI-CNFLEELKSGKGRRFELSDITGHIVEF 664
G MR+ + Y+G G ++ D + LEE KS K R FELS+I GH+VEF
Sbjct: 575 GEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEF 634
Query: 665 SADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKE 724
S+DQ+GSRFIQQKLE + DEK V++EI+P A LMTDVFGNYVIQKFFE+G P QR+E
Sbjct: 635 SSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRE 694
Query: 725 LANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQK 784
L +L+ +LPLS+QMYGCRVIQKA+E ++++QK Q+V+ELDG VMRCVRDQNGNHV+QK
Sbjct: 695 LGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQK 754
Query: 785 CIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCA 844
CIEC+P E I FIIS F G V LS HPYGCRVIQRVLEHC + +++EIL V
Sbjct: 755 CIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSM 814
Query: 845 LAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERE 904
L QDQYGNYV QHVL+ GKP ER+ II++L+G IVQ+SQ KFASNV+EKCL +GGP ERE
Sbjct: 815 LTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERE 874
Query: 905 LIIEEILGHNEET--LLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTY 962
L++ E+LG +E L MMKDQFANYVVQK+ E + Q+ ++L+RI+ H + LKKYTY
Sbjct: 875 LLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTY 934
Query: 963 GKHIVARFEMLI--GEENQTSES 983
GKHIVAR E L+ GE +S
Sbjct: 935 GKHIVARVEKLVAAGERRMALQS 957
Score = 289 (106.8 bits), Expect = 9.7e-28, Sum P(2) = 9.7e-28
Identities = 74/273 (27%), Positives = 145/273 (53%)
Query: 650 RRFELSD-ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNY 708
+R EL + + +++ S +G R IQ+ +E +D+K + KE+ H + + D GN+
Sbjct: 691 QRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNH 750
Query: 709 VIQKFFEYGSPAQRKE-LANQLVGQILPLSMQMYGCRVIQKALETIEI-EQKAQLVRELD 766
V+QK E P + E + + G ++ LS YGCRVIQ+ LE + +++++ E+
Sbjct: 751 VVQKCIEC-VPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEIL 809
Query: 767 GQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA 826
V +DQ GN+V+Q +E P++ II G++ +S + V+++ L
Sbjct: 810 STVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGG 869
Query: 827 DKHQCQFIVDEIL----DN--VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+ + + +V+E+L +N + A+ +DQ+ NYV Q VL+ +R I+ ++ H+
Sbjct: 870 PEER-ELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNA 928
Query: 881 LSQHKFASNVI---EKCLAYGGPAERELIIEEI 910
L ++ + +++ EK +A G ER + ++ +
Sbjct: 929 LKKYTYGKHIVARVEKLVAAG---ERRMALQSL 958
Score = 205 (77.2 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 54/234 (23%), Positives = 118/234 (50%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKAS-VFKEILPHASKLMTDVFGNYVIQK 712
+ ++ GH++ DQ+G+ +Q+ +E C +E + H L T +G VIQ+
Sbjct: 732 VKELDGHVMRCVRDQNGNHVVQKCIE-CVPEENIEFIISTFFGHVVTLSTHPYGCRVIQR 790
Query: 713 FFEY-GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMR 771
E+ +P + ++ +++ + L+ YG V+Q LE + +++ +++EL G++++
Sbjct: 791 VLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQ 850
Query: 772 CVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ------VAALSMHPYGCRVIQRVLEHC 825
+ + ++V++KC+ PE+ +++ G + A+ + V+Q+VLE C
Sbjct: 851 MSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETC 910
Query: 826 ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
D+ Q + I+ I ++ AL + YG ++ V + ER ++ L +V
Sbjct: 911 DDQ-QRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLPQPLV 963
Score = 111 (44.1 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 57 RSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFN-GNIRNSESEERLQANQTCLKYYGS 115
RSGSAPP ++GS A L + +S + N GN + EE + + L YY +
Sbjct: 53 RSGSAPPTVDGSLSAAGGLFSGGGGASFLEFGGVNKGNGFGGDDEE-FRKDPAYLSYYYA 111
Query: 116 NVNLNPRLP 124
N+ LNPRLP
Sbjct: 112 NMKLNPRLP 120
Score = 40 (19.1 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 218 NQSHSFGYSDSSSLRDPSVIS 238
N+ + FG D +DP+ +S
Sbjct: 87 NKGNGFGGDDEEFRKDPAYLS 107
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 1142 (407.1 bits), Expect = 1.7e-127, Sum P(3) = 1.7e-127
Identities = 217/357 (60%), Positives = 275/357 (77%)
Query: 620 YSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLE 679
+ G QG + + + + LE K+ K R ELS+I GH++EFS DQ+GSRFIQQKLE
Sbjct: 629 FGGLQGSSHVDIGSTAE-ASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYGSRFIQQKLE 687
Query: 680 NCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQ 739
+ +EK ++F EILP+ LMTDVFGNYVIQKFFE+G+ QRKELA Q+ G +L LS+Q
Sbjct: 688 TATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQ 747
Query: 740 MYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIIS 799
MYGCRVIQKALE +E+EQ+A++V+ELDG VM+CV DQNGNHVIQKCIE +P + I FIIS
Sbjct: 748 MYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFIIS 807
Query: 800 AFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVL 859
+F G+V ALS HPYGCRVIQRVLEH D + I++EI+D+VC LAQDQYGNYV QH++
Sbjct: 808 SFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHII 867
Query: 860 QRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEET-- 917
Q GKP ERS+II KL+G IV++SQ KFASNV+EKCL +GGP ER++++ E+LG+ +E
Sbjct: 868 QHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEP 927
Query: 918 LLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLI 974
L MMKD F NYVVQK+ E + A++LSRI+ H + LK+YTYGKHIVAR E LI
Sbjct: 928 LQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIVARVEKLI 984
Score = 309 (113.8 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 83/276 (30%), Positives = 146/276 (52%)
Query: 650 RRFELSD-ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNY 708
+R EL++ +TGH++ S +G R IQ+ LE ++++A + KE+ K + D GN+
Sbjct: 729 QRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNH 788
Query: 709 VIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIE-IEQKAQLVRELDG 767
VIQK E + + + G++L LS YGCRVIQ+ LE I+ IE + ++ E+
Sbjct: 789 VIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMD 848
Query: 768 QVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCAD 827
V +DQ GN+VIQ I+ P + II+ GQ+ +S + V+++ L
Sbjct: 849 SVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGP 908
Query: 828 KHQCQFIVDEIL----DN--VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQL 881
+ + Q +V+E+L +N + A+ +D +GNYV Q VL+ + I+ ++ H+ L
Sbjct: 909 EER-QVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNAL 967
Query: 882 SQHKFASNVI---EKCLAYGGPAERELIIEEILGHN 914
++ + +++ EK + G ER + + L N
Sbjct: 968 KRYTYGKHIVARVEKLITTG---ERRIGLSSSLAAN 1000
Score = 281 (104.0 bits), Expect = 1.8e-25, Sum P(3) = 1.8e-25
Identities = 76/256 (29%), Positives = 134/256 (52%)
Query: 727 NQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI 786
+++VG ++ SM YG R IQ+ LET E+K + E+ + D GN+VIQK
Sbjct: 663 SEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFF 722
Query: 787 ECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALA 846
E ++ + G V ALS+ YGCRVIQ+ LE + Q + +V E+ +V
Sbjct: 723 EHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQAR-MVKELDGSVMKCV 781
Query: 847 QDQYGNYVTQHVLQRGKPLERSK-IIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERE- 904
DQ GN+V Q ++R P + + II G ++ LS H + VI++ L + E +
Sbjct: 782 HDQNGNHVIQKCIER-LPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQR 840
Query: 905 LIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGK 964
+I+EEI+ +++ T+ +DQ+ NYV+Q I + +++ +++++ + + +
Sbjct: 841 IIMEEIM----DSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFAS 896
Query: 965 HIVARFEMLIG-EENQ 979
++V + G EE Q
Sbjct: 897 NVVEKCLTFGGPEERQ 912
Score = 134 (52.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 31/113 (27%), Positives = 55/113 (48%)
Query: 867 RSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQF 926
RS + ++ GH+++ S ++ S I++ L E+ I EIL + T+M D F
Sbjct: 658 RSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGR----TLMTDVF 713
Query: 927 ANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
NYV+QK FE + Q+ + ++ H L YG ++ + ++ E Q
Sbjct: 714 GNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQ 766
Score = 105 (42.0 bits), Expect = 1.7e-127, Sum P(3) = 1.7e-127
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 56 NRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSE-----SEERLQANQTCL 110
+RSGSAPP +EG A++N ++S ++ N + +I S S++ L+ + L
Sbjct: 56 HRSGSAPPTVEGLLRAMDNQYLNNNNSDHRDVGNIS-SITTSNGVELLSDDELRWHPEYL 114
Query: 111 KYYGSNVNLNPRLP 124
YY SN + NPRLP
Sbjct: 115 SYYYSNEHSNPRLP 128
Score = 50 (22.7 bits), Expect = 1.1e-121, Sum P(3) = 1.1e-121
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 94 IRNSESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHV 153
+ NS + R +N T + GSNV+L R R L+ L + N++ + + VH
Sbjct: 2 VTNSYMDTR--SNLTSVNR-GSNVDLEDRFQRELESLLQQHRNQQSF-GRERERDIDVHR 57
Query: 154 S 154
S
Sbjct: 58 S 58
Score = 40 (19.1 bits), Expect = 1.7e-127, Sum P(3) = 1.7e-127
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 475 DMQYLNKIYGQFGFSLQPSFANPLHLQY 502
D Q LN++ Q L +P + QY
Sbjct: 506 DRQSLNRLINQVASELHSPVMDPHYSQY 533
Score = 38 (18.4 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 746 IQKALETIEIEQKAQLVRELDGQVMRCVRDQN 777
+Q L+ +E+E ++ ++R + + +R QN
Sbjct: 370 MQSQLQ-VELENQSDVMRYIPNGHKKALRQQN 400
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
Identities = 282/645 (43%), Positives = 386/645 (59%)
Query: 357 GLIGTHIGMDQFHHGPSRPSTAVQPV--VQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
GL G H ++Q H P++ A + +++S P ++ + NP Y +
Sbjct: 344 GLQGGHNEVNQ-HEFPNKSDQAHKATGSLRNSQLRGPHGSAYNGGVGLANP-YQQLD--- 398
Query: 415 FYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLD-----GSAG-PSFHPQPXXXXXXX 468
SP Y + Y +N ++ ++A + A + D G +G S H
Sbjct: 399 --SPNYCLNNYALNPAVAS-MMANQLGNNNFAPMYDNVSALGFSGMDSRHHGRGFVSSGQ 455
Query: 469 XXXXXXDM-QYLNKIYGQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGVL 527
++ ++ N++ G G LQ +P++ QY ++ ++ +P + +
Sbjct: 456 NLSESRNLGRFSNRMMGG-GAGLQSHMVDPMYNQY-----ADSLDLLN--DPSMDRNFMG 507
Query: 528 GS-HTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNPPNMGMFVYXX 586
GS + + EL++ + A Q Y+SG +P++ SP G+ NM Y
Sbjct: 508 GSSYMDMLELQRAY-LGAQKSQYGVPYKSG---SPNSHSYYGSPT-FGS--NMS---YPG 557
Query: 587 XXXXXXXXXXXXVVGTGLLGGRNE--MRFSPVSNRYSGW-QGQRGFE-SYNDPKICNFLE 642
+ + R+E MRF + YSG G + S+++ + LE
Sbjct: 558 SPLAHHGMPNSLMSPYSPMR-RDEVNMRFPSATRNYSGGLMGSWHMDASFDEGFGSSMLE 616
Query: 643 ELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMT 702
E KS K R FELS+I GH+VEFS+DQ+GSRFIQQKLE + DEK V++EI+P A LMT
Sbjct: 617 EFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMT 676
Query: 703 DVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLV 762
DVFGNYVIQKFFE+G P QR+ELA +L +LPLS+QMYGCRVIQKA+E ++++QK ++V
Sbjct: 677 DVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV 736
Query: 763 RELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVL 822
+ELDG VMRCVRDQNGNHV+QKCIEC+P E I FIIS F G V LS HPYGCRVIQRVL
Sbjct: 737 KELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVL 796
Query: 823 EHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLS 882
EHC D +++EIL V LAQDQYGNYV QHVL+ GKP ER+ II++L+G IVQ+S
Sbjct: 797 EHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMS 856
Query: 883 QHKFASNVIEKCLAYGGPAERELIIEEILGHNEET--LLTMMKDQFANYVVQKIFELSSE 940
Q KFASNV+EKCL +GGP EREL++ E+LG +E L MMKDQFANYVVQK+ E +
Sbjct: 857 QQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDD 916
Query: 941 SQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLI--GEENQTSES 983
Q+ ++L+RI+ H LKKYTYGKH+VAR E L+ GE +S
Sbjct: 917 QQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAAGERRMALQS 961
Score = 303 (111.7 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 77/273 (28%), Positives = 147/273 (53%)
Query: 650 RRFELSD-ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNY 708
+R EL++ + H++ S +G R IQ+ +E +D+K + KE+ H + + D GN+
Sbjct: 695 QRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNH 754
Query: 709 VIQKFFEYGSPAQRKE-LANQLVGQILPLSMQMYGCRVIQKALETI-EIEQKAQLVRELD 766
V+QK E P + E + + G ++ LS YGCRVIQ+ LE + + +++++ E+
Sbjct: 755 VVQKCIEC-VPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEIL 813
Query: 767 GQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA 826
V +DQ GN+V+Q +E P++ II G++ +S + V+++ L
Sbjct: 814 STVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGG 873
Query: 827 DKHQCQFIVDEIL----DN--VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+ + + +V+E+L +N + A+ +DQ+ NYV Q VL+ +R I+ ++ H+
Sbjct: 874 PEER-ELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTA 932
Query: 881 LSQHKFASNV---IEKCLAYGGPAERELIIEEI 910
L ++ + +V IEK +A G ER + ++ +
Sbjct: 933 LKKYTYGKHVVARIEKLVAAG---ERRMALQSL 962
Score = 206 (77.6 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 53/230 (23%), Positives = 116/230 (50%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKAS-VFKEILPHASKLMTDVFGNYVIQK 712
+ ++ GH++ DQ+G+ +Q+ +E C +E + H L T +G VIQ+
Sbjct: 736 VKELDGHVMRCVRDQNGNHVVQKCIE-CVPEENIEFIISTFFGHVVTLSTHPYGCRVIQR 794
Query: 713 FFEY-GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMR 771
E+ P + ++ +++ + L+ YG V+Q LE + +++ +++EL G++++
Sbjct: 795 VLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQ 854
Query: 772 CVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ------VAALSMHPYGCRVIQRVLEHC 825
+ + ++V++KC+ PE+ +++ G + A+ + V+Q+VLE C
Sbjct: 855 MSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETC 914
Query: 826 ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLS 875
D+ Q + I+ I ++ AL + YG +V + + ER ++ L+
Sbjct: 915 DDQ-QRELILTRIKVHLTALKKYTYGKHVVARIEKLVAAGERRMALQSLT 963
Score = 125 (49.1 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 107/474 (22%), Positives = 180/474 (37%)
Query: 57 RSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFN-GNIRNSESEERLQANQTCLKYYGS 115
RSGSAPP ++GS A L + + + N GN + EE + + L YY +
Sbjct: 52 RSGSAPPTVDGSVSAAGGLFSGGGGAPFLEFGGVNKGNGFGGDDEE-FRKDPAYLSYYYA 110
Query: 116 NVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRS----P 171
N+ LNPRLP L ++R + R L S+N V + + D+RS P
Sbjct: 111 NMKLNPRLPPPL---MSR-EDLRVAQRLKGSNNVLGGVGD------RRKVNDNRSLFSMP 160
Query: 172 KHFSDEMVDRK------NGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGY 225
F E NG G + + G+ ++ DI Q D PV Q
Sbjct: 161 PGFEGEKTGASASEWDANGLI-GLPGLGLGGKQKSFADIFQADMGHGH-PVAQQPSR--- 215
Query: 226 SDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEV 285
S + D +V S+N +S + + G+ + S A + SS + + TP + +
Sbjct: 216 PASRNTFDENVDSNNNLSPSA---SQGIGAPSPYSYAAVLGSS-----LSRNGTPDPQAI 267
Query: 286 TSNDTDIWTKDEVLXXXXXXXXXXXXXXNMKDFN---TG---HSNLGNQKNQAQLNVHXX 339
+ T + N FN +G S+L N + L+
Sbjct: 268 ARVPSPCLTP---IGSGRMSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSCSVG 324
Query: 340 XXXXXXXENAHSQVSS--LGLIGTHIGMDQFHHGPSRPSTAVQPV--VQSSGFTPPLYAS 395
E +V + GL G H ++Q H P++ A + +++S P ++
Sbjct: 325 LDDRSQAEQDVEKVRNYMFGLQGGHNEVNQ-HEFPNKSDQAHKATGSLRNSQLRGPHGSA 383
Query: 396 AAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPPHGGIAMVLD----- 450
+ NP Y + SP Y + Y +N ++ ++A + A + D
Sbjct: 384 YNGGVGLANP-YQQLD-----SPNYCLNNYALNPAVAS-MMANQLGNNNFAPMYDNVSAL 436
Query: 451 GSAG-PSFHPQPXXXXXXXXXXXXXDM-QYLNKIYGQFGFSLQPSFANPLHLQY 502
G +G S H ++ ++ N++ G G LQ +P++ QY
Sbjct: 437 GFSGMDSRHHGRGFVSSGQNLSESRNLGRFSNRMMGG-GAGLQSHMVDPMYNQY 489
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 1011 (360.9 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 188/334 (56%), Positives = 254/334 (76%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EIL A +L
Sbjct: 716 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 775
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
MTDVFGNYVIQKFFE+GS Q+ LA ++ G +LPL++QMYGCRVIQKALE+I +Q+++
Sbjct: 776 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSE 835
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
+V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVIQR
Sbjct: 836 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 895
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G ++
Sbjct: 896 ILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 954
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFEL 937
LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+ ++
Sbjct: 955 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1014
Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 1015 AEPAQRKIIMHKIRPHISTLRKYTYGKHILAKLE 1048
Score = 362 (132.5 bits), Expect = 7.4e-29, Sum P(2) = 7.4e-29
Identities = 81/248 (32%), Positives = 133/248 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE+ S D+++ + KE+ H K + D GN+V+QK E
Sbjct: 804 IRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIEC 863
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+DQ
Sbjct: 864 VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ 923
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + ++D
Sbjct: 924 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALLID 982
Query: 837 EIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ + +
Sbjct: 983 EVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHISTLRKYTYGKH 1042
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1043 ILAKLEKY 1050
Score = 169 (64.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 39/110 (35%), Positives = 58/110 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EIL + +M D F NYV
Sbjct: 729 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL----QAAYQLMTDVFGNYV 784
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQT 980
+QK FE S Q+ + +RIR H L YG ++ + I + Q+
Sbjct: 785 IQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQS 834
Score = 141 (54.7 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 40/152 (26%), Positives = 70/152 (46%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 714 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 773
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 774 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESIS 829
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ+ M+ + HVLK K G H+V +
Sbjct: 830 SDQQSEMVKEL--DGHVLKCVKDQNGNHVVQK 859
Score = 47 (21.6 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 200 NLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDP--SVISSNGVSTTTGAHNTGVSSKV 257
+L + Q S P S S G+ SSSL S +S G S + A ++ + +
Sbjct: 533 SLTNSSQSSSLFSHGPGQPGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSA-SSSATRRE 591
Query: 258 DVSTA---YNVSSSS 269
+ST+ Y SSSS
Sbjct: 592 SLSTSSDLYKRSSSS 606
Score = 42 (19.8 bits), Expect = 2.5e-104, Sum P(2) = 2.5e-104
Identities = 22/90 (24%), Positives = 36/90 (40%)
Query: 209 FPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTT--GAHNTG----VSSKVDVSTA 262
F S SP+ S + SL P +SS+G S++ G G +S+
Sbjct: 620 FSSSPSPIGMPLPS--QTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAK 677
Query: 263 YNVSSSSHDWTATISSTPPTEEVTSNDTDI 292
Y +S + ++ S P + N +DI
Sbjct: 678 YRSASGTSSLFSSSSQLFPPSRLRYNRSDI 707
Score = 38 (18.4 bits), Expect = 6.5e-104, Sum P(2) = 6.5e-104
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 349 AHSQVSSLGLIGTHIGMDQFHHGPSRP-STAV 379
++S S L + F HGP +P ST++
Sbjct: 525 SNSFYGSTSLTNSSQSSSLFSHGPGQPGSTSL 556
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 1010 (360.6 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 188/334 (56%), Positives = 254/334 (76%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EIL A +L
Sbjct: 655 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 714
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
MTDVFGNYVIQKFFE+GS Q+ LA ++ G +LPL++QMYGCRVIQKALE+I +Q+++
Sbjct: 715 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSE 774
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
+V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVIQR
Sbjct: 775 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 834
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G ++
Sbjct: 835 ILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 893
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFEL 937
LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+ ++
Sbjct: 894 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 953
Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 954 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 987
Score = 364 (133.2 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 81/248 (32%), Positives = 133/248 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE+ S D+++ + KE+ H K + D GN+V+QK E
Sbjct: 743 IRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIEC 802
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+DQ
Sbjct: 803 VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ 862
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + ++D
Sbjct: 863 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALLID 921
Query: 837 EIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ + +
Sbjct: 922 EVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKH 981
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 982 ILAKLEKY 989
Score = 169 (64.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 39/110 (35%), Positives = 58/110 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EIL + +M D F NYV
Sbjct: 668 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL----QAAYQLMTDVFGNYV 723
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQT 980
+QK FE S Q+ + +RIR H L YG ++ + I + Q+
Sbjct: 724 IQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQS 773
Score = 141 (54.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 40/152 (26%), Positives = 70/152 (46%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 653 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 712
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 713 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESIS 768
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ+ M+ + HVLK K G H+V +
Sbjct: 769 SDQQSEMVKEL--DGHVLKCVKDQNGNHVVQK 798
Score = 48 (22.0 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 52/245 (21%), Positives = 77/245 (31%)
Query: 323 SNLGNQKNQAQLNVHXXXXXXXXXENAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPV 382
+NL Q+ A N + QV G + +Q G S A
Sbjct: 299 ANLFQQQAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAA 358
Query: 383 VQSS-GFTPPLYASAAAYMA-SPNPFYSNVQA----PGFYSPQYGVGGYVMNSSIGPPLV 436
+ F L Y +P +Y A PG + G+G V + P L+
Sbjct: 359 ANPTLAFGQGLATGMPGYQVLAPTAYYDQTGALVVGPG---ARTGLGAPVRLMAPTPVLI 415
Query: 437 -------AGYPPHGGIAMVLDGSAGPSFHPQPXXXXXXXXXXXXXDMQYLNKIYGQFGFS 489
A GG A L GS F P ++Q N YG +
Sbjct: 416 SSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQPPQQQQQQPSTNLQS-NSFYGSSSLT 474
Query: 490 LQPSFANPLHLQYYQQP------FGEAYNISGQF-EPLGSKGGVLGSHTNSHELKKGSDM 542
S ++ L QP FG ++ L G +GS +S ++ S
Sbjct: 475 -NSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLS 533
Query: 543 AASDV 547
+SD+
Sbjct: 534 TSSDL 538
Score = 46 (21.3 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 209 FPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTT--GAHNTG----VSSKVDVSTA 262
F S SP+ S + SL P +SS+G S++ G G +S+
Sbjct: 559 FSSSPSPIGMPLPS--QTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAK 616
Query: 263 YNVSSSSHDWTATISSTPPTEEVTSNDTDI 292
Y +SS+ ++ S P + N +DI
Sbjct: 617 YRSASSTSSLFSSSSQLFPPSRLRYNRSDI 646
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 1010 (360.6 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 188/334 (56%), Positives = 254/334 (76%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EIL A +L
Sbjct: 711 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 770
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
MTDVFGNYVIQKFFE+GS Q+ LA ++ G +LPL++QMYGCRVIQKALE+I +Q+++
Sbjct: 771 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSE 830
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
+V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVIQR
Sbjct: 831 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 890
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G ++
Sbjct: 891 ILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 949
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFEL 937
LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+ ++
Sbjct: 950 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1009
Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 1010 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 1043
Score = 364 (133.2 bits), Expect = 4.4e-29, Sum P(2) = 4.4e-29
Identities = 81/248 (32%), Positives = 133/248 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE+ S D+++ + KE+ H K + D GN+V+QK E
Sbjct: 799 IRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIEC 858
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+DQ
Sbjct: 859 VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ 918
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + ++D
Sbjct: 919 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALLID 977
Query: 837 EIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ + +
Sbjct: 978 EVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKH 1037
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1038 ILAKLEKY 1045
Score = 169 (64.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 39/110 (35%), Positives = 58/110 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EIL + +M D F NYV
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL----QAAYQLMTDVFGNYV 779
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQT 980
+QK FE S Q+ + +RIR H L YG ++ + I + Q+
Sbjct: 780 IQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQS 829
Score = 141 (54.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 40/152 (26%), Positives = 70/152 (46%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 709 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 768
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 769 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESIS 824
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ+ M+ + HVLK K G H+V +
Sbjct: 825 SDQQSEMVKEL--DGHVLKCVKDQNGNHVVQK 854
Score = 47 (21.6 bits), Expect = 9.4e-105, Sum P(2) = 9.4e-105
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 200 NLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDP--SVISSNGVSTTTGAHNTGVSSKV 257
+L + Q S P S S G+ SSSL S +S G S + A ++ + +
Sbjct: 528 SLTNSSQSSSLFSHGPGQPGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSA-SSSATRRE 586
Query: 258 DVSTA---YNVSSSS 269
+ST+ Y SSSS
Sbjct: 587 SLSTSSDLYKRSSSS 601
Score = 46 (21.3 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 209 FPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTT--GAHNTG----VSSKVDVSTA 262
F S SP+ S + SL P +SS+G S++ G G +S+
Sbjct: 615 FSSSPSPIGMPLPS--QTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAK 672
Query: 263 YNVSSSSHDWTATISSTPPTEEVTSNDTDI 292
Y +SS+ ++ S P + N +DI
Sbjct: 673 YRSASSTSSLFSSSSQLFPPSRLRYNRSDI 702
Score = 38 (18.4 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 349 AHSQVSSLGLIGTHIGMDQFHHGPSRP-STAV 379
++S S L + F HGP +P ST++
Sbjct: 520 SNSFYGSTSLTNSSQSSSLFSHGPGQPGSTSL 551
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 1010 (360.6 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 188/334 (56%), Positives = 254/334 (76%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EIL A +L
Sbjct: 710 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 769
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
MTDVFGNYVIQKFFE+GS Q+ LA ++ G +LPL++QMYGCRVIQKALE+I +Q+++
Sbjct: 770 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSE 829
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
+V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVIQR
Sbjct: 830 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 889
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G ++
Sbjct: 890 ILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 948
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFEL 937
LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+ ++
Sbjct: 949 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1008
Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 1009 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 1042
Score = 364 (133.2 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
Identities = 81/248 (32%), Positives = 133/248 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE+ S D+++ + KE+ H K + D GN+V+QK E
Sbjct: 798 IRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIEC 857
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+DQ
Sbjct: 858 VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ 917
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + ++D
Sbjct: 918 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALLID 976
Query: 837 EIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ + +
Sbjct: 977 EVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKH 1036
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1037 ILAKLEKY 1044
Score = 169 (64.5 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 39/110 (35%), Positives = 58/110 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EIL + +M D F NYV
Sbjct: 723 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL----QAAYQLMTDVFGNYV 778
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQT 980
+QK FE S Q+ + +RIR H L YG ++ + I + Q+
Sbjct: 779 IQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQS 828
Score = 141 (54.7 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 40/152 (26%), Positives = 70/152 (46%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 708 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 767
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 768 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESIS 823
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ+ M+ + HVLK K G H+V +
Sbjct: 824 SDQQSEMVKEL--DGHVLKCVKDQNGNHVVQK 853
Score = 46 (21.3 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 212 SSSPVYNQSHSFGYSDSSSLRDP--SVISSNGVSTTTGAHNTGVSSKVDVSTA---YNVS 266
S P S S G+ SSSL S +S G S + A ++ + + +ST+ Y S
Sbjct: 539 SHGPGQPGSTSLGFGSSSSLGAAIGSALSGFGSSVGSSA-SSSATRRESLSTSSDLYKRS 597
Query: 267 SSS 269
SSS
Sbjct: 598 SSS 600
Score = 46 (21.3 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 209 FPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTT--GAHNTG----VSSKVDVSTA 262
F S SP+ S + SL P +SS+G S++ G G +S+
Sbjct: 614 FSSSPSPIGMPLPS--QTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAK 671
Query: 263 YNVSSSSHDWTATISSTPPTEEVTSNDTDI 292
Y +SS+ ++ S P + N +DI
Sbjct: 672 YRSASSTSSLFSSSSQLFPPSRLRYNRSDI 701
Score = 38 (18.4 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 349 AHSQVSSLGLIGTHIGMDQFHHGPSRP-STAV 379
++S S L + F HGP +P ST++
Sbjct: 519 SNSFYGSTSLTSSSQSSSLFSHGPGQPGSTSL 550
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 1006 (359.2 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
Identities = 188/334 (56%), Positives = 253/334 (75%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EIL A +L
Sbjct: 709 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 768
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
MTDVFGNYVIQKFFE+GS Q+ LA ++ G +LPL++QMYGCRVIQKALE+I +Q+ +
Sbjct: 769 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNE 828
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
+V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVIQR
Sbjct: 829 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 888
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G ++
Sbjct: 889 ILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 947
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFEL 937
LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+ ++
Sbjct: 948 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1007
Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 1008 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 1041
Score = 361 (132.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 81/248 (32%), Positives = 132/248 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE+ S D++ + KE+ H K + D GN+V+QK E
Sbjct: 797 IRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIEC 856
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+DQ
Sbjct: 857 VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ 916
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + ++D
Sbjct: 917 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALLID 975
Query: 837 EIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ + +
Sbjct: 976 EVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKH 1035
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1036 ILAKLEKY 1043
Score = 167 (63.8 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 39/109 (35%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EIL + +M D F NYV
Sbjct: 722 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL----QAAYQLMTDVFGNYV 777
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + +RIR H L YG ++ + I + Q
Sbjct: 778 IQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQ 826
Score = 137 (53.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 40/152 (26%), Positives = 69/152 (45%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 707 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 766
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 767 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESIS 822
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ M+ + HVLK K G H+V +
Sbjct: 823 PDQQNEMVKEL--DGHVLKCVKDQNGNHVVQK 852
Score = 46 (21.3 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 212 SSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVD-VSTA---YNVSS 267
S P S S G+ SSSL + G ++ G+ + +++ D +ST+ Y SS
Sbjct: 538 SHGPGQPGSTSLGFGSSSSLGAAIGSALGGFGSSVGSSASSSATRRDSLSTSSDLYKRSS 597
Query: 268 SS 269
SS
Sbjct: 598 SS 599
Score = 40 (19.1 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 507 FGEAYNISGQF-EPLGSKGGVLGSHTNSHELKKGSDMAASDV 547
FG + ++ LG G +GS +S ++ S +SD+
Sbjct: 551 FGSSSSLGAAIGSALGGFGSSVGSSASSSATRRDSLSTSSDL 592
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 1006 (359.2 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
Identities = 188/334 (56%), Positives = 253/334 (75%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EIL A +L
Sbjct: 708 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 767
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
MTDVFGNYVIQKFFE+GS Q+ LA ++ G +LPL++QMYGCRVIQKALE+I +Q+ +
Sbjct: 768 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNE 827
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
+V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVIQR
Sbjct: 828 MVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQR 887
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G ++
Sbjct: 888 ILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 946
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFEL 937
LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+ ++
Sbjct: 947 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 1006
Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 1007 AEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 1040
Score = 361 (132.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 81/248 (32%), Positives = 132/248 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE+ S D++ + KE+ H K + D GN+V+QK E
Sbjct: 796 IRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIEC 855
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+DQ
Sbjct: 856 VQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQ 915
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + ++D
Sbjct: 916 YGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALLID 974
Query: 837 EIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ + +
Sbjct: 975 EVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKH 1034
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1035 ILAKLEKY 1042
Score = 167 (63.8 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 39/109 (35%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EIL + +M D F NYV
Sbjct: 721 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL----QAAYQLMTDVFGNYV 776
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + +RIR H L YG ++ + I + Q
Sbjct: 777 IQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQ 825
Score = 137 (53.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 40/152 (26%), Positives = 69/152 (45%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 706 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 765
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 766 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESIS 821
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ M+ + HVLK K G H+V +
Sbjct: 822 PDQQNEMVKEL--DGHVLKCVKDQNGNHVVQK 851
Score = 46 (21.3 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 212 SSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVD-VSTA---YNVSS 267
S P S S G+ SSSL + G ++ G+ + +++ D +ST+ Y SS
Sbjct: 537 SHGPGQPGSTSLGFGSSSSLGAAIGSALGGFGSSVGSSASSSATRRDSLSTSSDLYKRSS 596
Query: 268 SS 269
SS
Sbjct: 597 SS 598
Score = 40 (19.1 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 507 FGEAYNISGQF-EPLGSKGGVLGSHTNSHELKKGSDMAASDV 547
FG + ++ LG G +GS +S ++ S +SD+
Sbjct: 550 FGSSSSLGAAIGSALGGFGSSVGSSASSSATRRDSLSTSSDL 591
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 1002 (357.8 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 188/336 (55%), Positives = 255/336 (75%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EI+ A +L
Sbjct: 549 LEDFRNNRFPNLQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAYQL 608
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQK-- 758
MTDVFGNYVIQKFFE+GS Q+ LAN++ G +LPL++QMYGCRVIQKALE+I +Q+
Sbjct: 609 MTDVFGNYVIQKFFEFGSLDQKLALANRIRGHVLPLALQMYGCRVIQKALESISSDQQVI 668
Query: 759 AQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVI 818
+++V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVI
Sbjct: 669 SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVI 728
Query: 819 QRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHI 878
QR+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G +
Sbjct: 729 QRILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKV 787
Query: 879 VQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIF 935
+ LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+
Sbjct: 788 LALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI 847
Query: 936 ELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+++ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 848 DMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 883
Score = 353 (129.3 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 81/250 (32%), Positives = 133/250 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEK--ASVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE+ S D++ + + KE+ H K + D GN+V+QK
Sbjct: 637 IRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCI 696
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+
Sbjct: 697 ECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQ 756
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + +
Sbjct: 757 DQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALL 815
Query: 835 VDEIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ +
Sbjct: 816 IDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYG 875
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 876 KHILAKLEKY 885
Score = 169 (64.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 39/113 (34%), Positives = 60/113 (53%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EI+ + +M D F NYV
Sbjct: 562 LRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIV----QAAYQLMTDVFGNYV 617
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR-FEMLIGEENQTSE 982
+QK FE S Q+ + +RIR H L YG ++ + E + ++ SE
Sbjct: 618 IQKFFEFGSLDQKLALANRIRGHVLPLALQMYGCRVIQKALESISSDQQVISE 670
Score = 135 (52.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 39/152 (25%), Positives = 67/152 (44%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 547 RLLEDFRNNRFPNLQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQAAY 606
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 607 QLMTDVFGNYVIQKFFEFGSLDQKLALANRIRGH----VLPLALQMYGCRVIQKALESIS 662
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ + HVLK K G H+V +
Sbjct: 663 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQK 694
Score = 46 (21.3 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 209 FPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTT--GAHNTG----VSSKVDVSTA 262
F S SP+ S + SL P +SS+G S++ G G +S+
Sbjct: 453 FSSSPSPIGMPLPS--QTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAK 510
Query: 263 YNVSSSSHDWTATISSTPPTEEVTSNDTDI 292
Y +SS+ ++ S P + N +DI
Sbjct: 511 YRSASSTSSLFSSSSQLFPPSRLRYNRSDI 540
Score = 40 (19.1 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 349 AHSQVSSLGLIGTHIGMDQFHHGPSRPSTA 378
++S S L + F HGP +P +A
Sbjct: 358 SNSFYGSSSLTNSSQSSSLFSHGPGQPGSA 387
Score = 40 (19.1 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 32/132 (24%), Positives = 46/132 (34%)
Query: 426 VMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHP---QPXXXXXXXXXXXXXDMQYLNKI 482
V+ SS A GG A L GS F P QP ++Q N
Sbjct: 305 VLISSAAAQAAAAAAAAGGTANSLTGSTNGLFRPIGTQPPQQQQQQQPST--NLQS-NSF 361
Query: 483 YGQFGFSLQPSFANPLHLQYYQQP------FGEAYNISGQF-EPLGSKGGVLGSHTNSHE 535
YG + S ++ L QP FG ++ L G +GS +S
Sbjct: 362 YGSSSLT-NSSQSSSLFSHGPGQPGSASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSA 420
Query: 536 LKKGSDMAASDV 547
++ S +SD+
Sbjct: 421 TRRESLSTSSDL 432
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 999 (356.7 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 188/336 (55%), Positives = 254/336 (75%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EIL A +L
Sbjct: 711 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 770
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQK-- 758
MTDVFGNYVIQKFFE+GS Q+ LA ++ G +LPL++QMYGCRVIQKALE+I +Q+
Sbjct: 771 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVI 830
Query: 759 AQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVI 818
+++V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVI
Sbjct: 831 SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVI 890
Query: 819 QRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHI 878
QR+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G +
Sbjct: 891 QRILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKV 949
Query: 879 VQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIF 935
+ LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+
Sbjct: 950 LALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI 1009
Query: 936 ELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+++ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 1010 DMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 1045
Score = 353 (129.3 bits), Expect = 5.6e-28, Sum P(2) = 5.6e-28
Identities = 81/250 (32%), Positives = 133/250 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEK--ASVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE+ S D++ + + KE+ H K + D GN+V+QK
Sbjct: 799 IRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCI 858
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+
Sbjct: 859 ECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQ 918
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + +
Sbjct: 919 DQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALL 977
Query: 835 VDEIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ +
Sbjct: 978 IDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYG 1037
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1038 KHILAKLEKY 1047
Score = 171 (65.3 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EIL + +M D F NYV
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL----QAAYQLMTDVFGNYV 779
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR-FEMLIGEENQTSE 982
+QK FE S Q+ + +RIR H L YG ++ + E + ++ SE
Sbjct: 780 IQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISE 832
Score = 134 (52.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 39/152 (25%), Positives = 67/152 (44%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 709 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAY 768
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 769 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESIS 824
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ + HVLK K G H+V +
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQK 856
Score = 48 (22.0 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 52/245 (21%), Positives = 77/245 (31%)
Query: 323 SNLGNQKNQAQLNVHXXXXXXXXXENAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPV 382
+NL Q+ A N + QV G + +Q G S A
Sbjct: 355 ANLFQQQAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAA 414
Query: 383 VQSS-GFTPPLYASAAAYMA-SPNPFYSNVQA----PGFYSPQYGVGGYVMNSSIGPPLV 436
+ F L Y +P +Y A PG + G+G V + P L+
Sbjct: 415 ANPTLAFGQGLATGMPGYQVLAPTAYYDQTGALVVGPG---ARTGLGAPVRLMAPTPVLI 471
Query: 437 -------AGYPPHGGIAMVLDGSAGPSFHPQPXXXXXXXXXXXXXDMQYLNKIYGQFGFS 489
A GG A L GS F P ++Q N YG +
Sbjct: 472 SSAAAQAAAAAAAGGTASSLTGSTNGLFRPIGTQPPQQQQQQPSTNLQS-NSFYGSSSLT 530
Query: 490 LQPSFANPLHLQYYQQP------FGEAYNISGQF-EPLGSKGGVLGSHTNSHELKKGSDM 542
S ++ L QP FG ++ L G +GS +S ++ S
Sbjct: 531 -NSSQSSSLFSHGPGQPGSTSLGFGSGNSLGAAIGSALSGFGSSVGSSASSSATRRESLS 589
Query: 543 AASDV 547
+SD+
Sbjct: 590 TSSDL 594
Score = 46 (21.3 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 209 FPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTT--GAHNTG----VSSKVDVSTA 262
F S SP+ S + SL P +SS+G S++ G G +S+
Sbjct: 615 FSSSPSPIGMPLPS--QTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAK 672
Query: 263 YNVSSSSHDWTATISSTPPTEEVTSNDTDI 292
Y +SS+ ++ S P + N +DI
Sbjct: 673 YRSASSTSSLFSSSSQLFPPSRLRYNRSDI 702
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 998 (356.4 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 188/336 (55%), Positives = 254/336 (75%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ + +L D+ GHIVEFS DQHGSRFIQQKLE + E+ VF EIL A +L
Sbjct: 711 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQL 770
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQK-- 758
MTDVFGNYVIQKFFE+GS Q+ LA ++ G +LPL++QMYGCRVIQKALE+I +Q+
Sbjct: 771 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVI 830
Query: 759 AQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVI 818
+++V+ELDG V++CV+DQNGNHV+QKCIEC+ P+ + FII AF GQV LS HPYGCRVI
Sbjct: 831 SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVI 890
Query: 819 QRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHI 878
QR+LEHC + Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G +
Sbjct: 891 QRILEHCTAE-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKV 949
Query: 879 VQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIF 935
+ LSQHKFASNV+EKC+ + AER L+I+E+ N+ L TMMKDQ+ANYVVQK+
Sbjct: 950 LALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI 1009
Query: 936 ELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+++ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 1010 DMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLE 1045
Score = 353 (129.3 bits), Expect = 9.0e-28, Sum P(2) = 9.0e-28
Identities = 81/250 (32%), Positives = 133/250 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEK--ASVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE+ S D++ + + KE+ H K + D GN+V+QK
Sbjct: 799 IRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCI 858
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+
Sbjct: 859 ECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQ 918
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I+S G+V ALS H + V+++ + H A + + +
Sbjct: 919 DQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTH-ASRAERALL 977
Query: 835 VDEIL-DN------VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ N + + +DQY NYV Q ++ +P +R I+ K+ HI L ++ +
Sbjct: 978 IDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYG 1037
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1038 KHILAKLEKY 1047
Score = 171 (65.3 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GHIV+ SQ + S I++ L PAER+++ EIL + +M D F NYV
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEIL----QAAYQLMTDVFGNYV 779
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR-FEMLIGEENQTSE 982
+QK FE S Q+ + +RIR H L YG ++ + E + ++ SE
Sbjct: 780 IQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISE 832
Score = 132 (51.5 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 39/152 (25%), Positives = 67/152 (44%)
Query: 820 RVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
R+LE + + +++ ++ +QDQ+G+ Q L+R P ER + ++
Sbjct: 709 RLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAY 768
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
QL F + VI+K +G ++ + I GH +L + + V+QK E S
Sbjct: 769 QLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH----VLPLALQMYGCRVIQKALESIS 824
Query: 940 ESQQAMMLSRIRTHAHVLK--KYTYGKHIVAR 969
QQ + HVLK K G H+V +
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQK 856
Score = 46 (21.3 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 209 FPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTT--GAHNTG----VSSKVDVSTA 262
F S SP+ S + SL P +SS+G S++ G G +S+
Sbjct: 615 FSSSPSPIGMPLPS--QTPGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAAPGAEAK 672
Query: 263 YNVSSSSHDWTATISSTPPTEEVTSNDTDI 292
Y +SS+ ++ S P + N +DI
Sbjct: 673 YRSASSTSSLFSSSSQLFPPSRLRYNRSDI 702
Score = 41 (19.5 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 32/132 (24%), Positives = 46/132 (34%)
Query: 426 VMNSSIGPPLVAGYPPHGGIAMVLDGSAGPSFHP---QPXXXXXXXXXXXXXDMQYLNKI 482
V+ SS A GG A L GS F P QP ++Q N
Sbjct: 466 VLISSTAAQAAAAAAAAGGTANSLTGSTNGLFRPIGTQPPQQQQQQQQPST-NLQS-NSF 523
Query: 483 YGQFGFSLQPSFANPLHLQYYQQP------FGEAYNISGQF-EPLGSKGGVLGSHTNSHE 535
YG + S ++ L QP FG ++ L G +GS +S
Sbjct: 524 YGSSSLT-NSSQSSSLFSHGPGQPGSASLGFGSGSSLGAAIGSALSGFGSSVGSSASSSA 582
Query: 536 LKKGSDMAASDV 547
++ S +SD+
Sbjct: 583 TRRESLSTSSDL 594
Score = 40 (19.1 bits), Expect = 9.5e-103, Sum P(2) = 9.5e-103
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 349 AHSQVSSLGLIGTHIGMDQFHHGPSRPSTA 378
++S S L + F HGP +P +A
Sbjct: 520 SNSFYGSSSLTNSSQSSSLFSHGPGQPGSA 549
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 951 (339.8 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 189/343 (55%), Positives = 249/343 (72%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE+ ++ K + ELSDI GHI EFS DQ GSR IQQK+EN S++EK VF E++ L
Sbjct: 445 LEDFRNLK-MKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQLVFDEVVVAVHSL 503
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
MTDVFGNYV+QKFFE+G+ Q++ LA++L G IL L++QMYGCRVIQKA+E+IE++++
Sbjct: 504 MTDVFGNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDKQIL 563
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
L+ EL+G +++CV DQNGNHVIQKCIE IP I FII +F G + L+ HPYGCRVIQR
Sbjct: 564 LIGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQR 623
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+LEHCA+K Q I+DE++ +L QDQYGNYV QHVL+ G P ++S I+ KL G I
Sbjct: 624 ILEHCAEK-QVAPILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYN 682
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEILG-----HNEETLLTMMKDQFANYVVQKIF 935
LSQHKFASNVIEKC+ +G AER LII EILG ++ LL ++KD +ANYV+QKI
Sbjct: 683 LSQHKFASNVIEKCVQHGCTAERILIINEILGDANSPNSSNVLLKILKDPYANYVIQKIL 742
Query: 936 ELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEEN 978
++ +Q+ M+++RI+ LKK T GKHI++R E N
Sbjct: 743 DIVEPAQRDMIINRIQPFVPTLKKVTPGKHIISRIEKYSANNN 785
Score = 132 (51.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 30/124 (24%), Positives = 63/124 (50%)
Query: 847 QDQYGNYVTQ-HVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAEREL 905
Q Q Y T+ +L+ + L+ + + GHI + S+ + S +I++ + E++L
Sbjct: 432 QQQTNEYTTRSQLLEDFRNLKMKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQL 491
Query: 906 IIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKH 965
+ +E++ + ++M D F NYV+QK FE + Q+ ++ ++ H L YG
Sbjct: 492 VFDEVV----VAVHSLMTDVFGNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCR 547
Query: 966 IVAR 969
++ +
Sbjct: 548 VIQK 551
Score = 93 (37.8 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 45/176 (25%), Positives = 81/176 (46%)
Query: 115 SNVNLNPRLPRHLDHDLNRFGNRRGLTS-LDNSSNCSVHVSQVTLST-HKEESEDDRSPK 172
+N N N + ++ + N GN G+ + + N S H S + S+ + S +P
Sbjct: 259 NNNNSNSNINSNITN--NATGNNGGMNKPVSINLNTSTHSSPNSQSSPNTPNSLSTPTPL 316
Query: 173 HFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLR 232
S + + NG + N++ G V+I Q P S+ + + S++S+
Sbjct: 317 SASTVVANNNNG--NFNDSAN--GNGLKPVEINQTLSPSSTIVANAPAPNVVLSNNST-- 370
Query: 233 DPSVISSNGVSTTTGAHNTGVSSKVD-VSTAYNVSSSSHDWTATISSTPPTEEVTS 287
SV+SS+ TT + ++ SS + +T ++++ TAT S+TPP VTS
Sbjct: 371 -NSVVSSSSPPPTTSSPSSLSSSSLSSAATTTTTTTTTTTATATQSTTPPPPPVTS 425
Score = 54 (24.1 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 210 PRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSS 269
P SSS ++ S ++++S S I+SN + TG +N G++ V + N+++S+
Sbjct: 243 PTSSSLSHSPSTIVTLNNNNS---NSNINSNITNNATG-NNGGMNKPVSI----NLNTST 294
Query: 270 HDWTATISSTPPTEEVTSNDTDI 292
H + S+P T S T +
Sbjct: 295 HS-SPNSQSSPNTPNSLSTPTPL 316
Score = 46 (21.3 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 41/225 (18%), Positives = 79/225 (35%)
Query: 72 IENLIARKSSSSGVNLAN----FNGNIRNSESEERLQANQTCLKYYGSNVN-LNPRL-PR 125
+ N +S VN+ N +N N N+ + + + + G + N L+P + +
Sbjct: 150 LTNNTVSQSPPQPVNIINNHTQYNSNNNNNNNNNNQYYSSSPQQNIGLSPNSLSPSMIQQ 209
Query: 126 HLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNGF 185
H H + + N H VTLS+ S SP + N
Sbjct: 210 HHHHQQQQHHHHHQHHHQQQHHN--QH-PVVTLSSSPTSSSLSHSPSTIVTLNNNNSNSN 266
Query: 186 CSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTT 245
+ N G N + + S+ N S + +SL P+ +S++ V
Sbjct: 267 INSNITNNATGNNGGMNKPVSINLNTSTHSSPNSQSS--PNTPNSLSTPTPLSASTVVAN 324
Query: 246 TGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSNDT 290
N S+ + ++ + + +++ P V SN++
Sbjct: 325 NNNGNFNDSANGNGLKPVEINQTLSPSSTIVANAPAPNVVLSNNS 369
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 990 (353.6 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 190/362 (52%), Positives = 257/362 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 563 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 622
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 623 FIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGH 682
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPE 792
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+ P+
Sbjct: 683 VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQ 742
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
+ FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQYGN
Sbjct: 743 SLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQYGN 801
Query: 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILG 912
YV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 802 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 861
Query: 913 HNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+A+
Sbjct: 862 MNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK 921
Query: 970 FE 971
E
Sbjct: 922 LE 923
Score = 329 (120.9 bits), Expect = 4.5e-26, Sum P(2) = 4.5e-26
Identities = 75/248 (30%), Positives = 128/248 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK E
Sbjct: 679 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIEC 738
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+DQ
Sbjct: 739 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ 798
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I++ G V LS H + V+++ + H A + + ++D
Sbjct: 799 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVLID 857
Query: 837 EIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ + +
Sbjct: 858 EVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKH 917
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 918 ILAKLEKY 925
Score = 160 (61.4 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 37/109 (33%), Positives = 56/109 (51%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L AER+L+ EIL + +M D F NYV
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL----QAAYQLMVDVFGNYV 659
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 660 IQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 708
Score = 53 (23.7 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 23/84 (27%), Positives = 32/84 (38%)
Query: 198 NRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKV 257
N +L Q S + S G+ SSSL + G T NTG S+
Sbjct: 406 NNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRR 465
Query: 258 DVSTAYNVSSSSHDWTATISSTPP 281
D +++ SS + T SS P
Sbjct: 466 D-----SLTGSSDLYKRTSSSLAP 484
Score = 43 (20.2 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 24 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 67
Score = 40 (19.1 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 24/105 (22%), Positives = 38/105 (36%)
Query: 440 PPHGGIAMVLDGSAGPSFHPQPXXXXXXXXXXXXXDMQYLNKIYGQFGFSLQPSFANPLH 499
P + + +VL G PQP + I G G S + +
Sbjct: 29 PANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSSPVP--GSI-GVAGRSQDDAMVD--- 82
Query: 500 LQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAA 544
++Q+ GE + G GS GG G +T+ H G ++ A
Sbjct: 83 -YFFQRQHGE--QLGGG----GSGGG--GYNTSKHRWPTGDNIHA 118
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 988 (352.9 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
Identities = 190/362 (52%), Positives = 258/362 (71%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 805 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 864
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 865 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 924
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPE 792
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+ P+
Sbjct: 925 VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQ 984
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
+ FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQYGN
Sbjct: 985 SLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQYGN 1043
Query: 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILG 912
YV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1044 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 1103
Query: 913 HNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
N+ L TMMKDQ+ANYVVQK+ +++ +Q+ +++ +IR H L+KYTYGKHI+A+
Sbjct: 1104 MNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAK 1163
Query: 970 FE 971
E
Sbjct: 1164 LE 1165
Score = 332 (121.9 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 75/248 (30%), Positives = 128/248 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK E
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIEC 980
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+DQ
Sbjct: 981 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ 1040
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I++ G V LS H + V+++ + H A + + ++D
Sbjct: 1041 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVLID 1099
Query: 837 EIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ + +
Sbjct: 1100 EVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKH 1159
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1160 ILAKLEKY 1167
Score = 165 (63.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 901
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 902 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Score = 53 (23.7 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
Identities = 23/84 (27%), Positives = 32/84 (38%)
Query: 198 NRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKV 257
N +L Q S + S G+ SSSL + G T NTG S+
Sbjct: 648 NNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRR 707
Query: 258 DVSTAYNVSSSSHDWTATISSTPP 281
D +++ SS + T SS P
Sbjct: 708 D-----SLTGSSDLYKRTSSSLTP 726
Score = 43 (20.2 bits), Expect = 5.2e-102, Sum P(2) = 5.2e-102
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 24 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 67
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 988 (352.9 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
Identities = 190/362 (52%), Positives = 258/362 (71%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 354 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 413
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 414 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 473
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPE 792
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+ P+
Sbjct: 474 VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQ 533
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
+ FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQYGN
Sbjct: 534 SLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQYGN 592
Query: 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILG 912
YV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 593 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 652
Query: 913 HNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
N+ L TMMKDQ+ANYVVQK+ +++ +Q+ +++ +IR H L+KYTYGKHI+A+
Sbjct: 653 MNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAK 712
Query: 970 FE 971
E
Sbjct: 713 LE 714
Score = 332 (121.9 bits), Expect = 7.1e-27, Sum P(2) = 7.1e-27
Identities = 75/248 (30%), Positives = 128/248 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK E
Sbjct: 470 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIEC 529
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+DQ
Sbjct: 530 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ 589
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I++ G V LS H + V+++ + H A + + ++D
Sbjct: 590 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVLID 648
Query: 837 EIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ + +
Sbjct: 649 EVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKH 708
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 709 ILAKLEKY 716
Score = 165 (63.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 395 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 450
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 451 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 499
Score = 53 (23.7 bits), Expect = 4.6e-103, Sum P(2) = 4.6e-103
Identities = 23/84 (27%), Positives = 32/84 (38%)
Query: 198 NRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKV 257
N +L Q S + S G+ SSSL + G T NTG S+
Sbjct: 197 NNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRR 256
Query: 258 DVSTAYNVSSSSHDWTATISSTPP 281
D +++ SS + T SS P
Sbjct: 257 D-----SLTGSSDLYKRTSSSLTP 275
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 987 (352.5 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 190/362 (52%), Positives = 257/362 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 746 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 805
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 806 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 865
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPE 792
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+ P+
Sbjct: 866 VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQ 925
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
+ FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQYGN
Sbjct: 926 SLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQYGN 984
Query: 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILG 912
YV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 985 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 1044
Query: 913 HNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+A+
Sbjct: 1045 MNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK 1104
Query: 970 FE 971
E
Sbjct: 1105 LE 1106
Score = 329 (120.9 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 75/248 (30%), Positives = 128/248 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK E
Sbjct: 862 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIEC 921
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+DQ
Sbjct: 922 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ 981
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I++ G V LS H + V+++ + H A + + ++D
Sbjct: 982 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVLID 1040
Query: 837 EIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ + +
Sbjct: 1041 EVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKH 1100
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1101 ILAKLEKY 1108
Score = 165 (63.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 787 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 842
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 843 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 891
Score = 52 (23.4 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 222 SFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPP 281
S G+ SSSL + G T NTG S+ D +++ SS + T SS P
Sbjct: 613 SLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRD-----SLTGSSDLYKRTSSSLTP 667
Score = 45 (20.9 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 49/217 (22%), Positives = 71/217 (32%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYS-PQYGVGGYVM 427
HH P P+ PVV +SG A P P + A G +S P G G
Sbjct: 60 HH-PQEPANPNMPVVLTSG---------TGSQAQPQPAANQALAAGTHSSPVPGSIGVAG 109
Query: 428 NSSIGPPLVAGYPPHGGIAMVLDGSAGPSF----HPQPXXXXXXXXXXXXXDMQYLNKIY 483
S + + G + GS G + H P M LN +
Sbjct: 110 RSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNNSKHRWPTGDNIHAEHQVRS-MDELNHDF 168
Query: 484 GQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFE--PLGS---KGGVLGSHTNSHELKK 538
+ P + GE N G F+ LG +G V+ TN ++
Sbjct: 169 QALALEGRAMGEGPRDADSDENDKGEKKN-KGTFDGDKLGDLKEEGDVMDK-TNGLPVQN 226
Query: 539 GSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGN 575
G D +DV+ F G +N + + P G+
Sbjct: 227 GID---ADVKDFSR-TPGNCQNSANEVDLLGPNQNGS 259
Score = 43 (20.2 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 391 PLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLV 436
P A A PNP+ + PG + Y G +++GP +V
Sbjct: 355 PHIAGLAPAAFVPNPYIISAAPPG--TDPY-TAGLAAAATLGPAVV 397
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 987 (352.5 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 190/362 (52%), Positives = 257/362 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 563 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 622
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 623 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 682
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPE 792
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+ P+
Sbjct: 683 VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQ 742
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
+ FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQYGN
Sbjct: 743 SLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQYGN 801
Query: 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILG 912
YV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 802 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 861
Query: 913 HNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+A+
Sbjct: 862 MNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK 921
Query: 970 FE 971
E
Sbjct: 922 LE 923
Score = 329 (120.9 bits), Expect = 5.8e-26, Sum P(2) = 5.8e-26
Identities = 75/248 (30%), Positives = 128/248 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK E
Sbjct: 679 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIEC 738
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+DQ
Sbjct: 739 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ 798
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I++ G V LS H + V+++ + H A + + ++D
Sbjct: 799 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVLID 857
Query: 837 EIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ + +
Sbjct: 858 EVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKH 917
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 918 ILAKLEKY 925
Score = 165 (63.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 659
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 660 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 708
Score = 52 (23.4 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 222 SFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPP 281
S G+ SSSL + G T NTG S+ D +++ SS + T SS P
Sbjct: 430 SLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRD-----SLTGSSDLYKRTSSSLTP 484
Score = 43 (20.2 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 24 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 67
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 987 (352.5 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 190/362 (52%), Positives = 257/362 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 805 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 864
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 865 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 924
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPE 792
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+ P+
Sbjct: 925 VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQ 984
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
+ FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQYGN
Sbjct: 985 SLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQYGN 1043
Query: 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILG 912
YV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1044 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 1103
Query: 913 HNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+A+
Sbjct: 1104 MNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK 1163
Query: 970 FE 971
E
Sbjct: 1164 LE 1165
Score = 329 (120.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 75/248 (30%), Positives = 128/248 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK E
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIEC 980
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+DQ
Sbjct: 981 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ 1040
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I++ G V LS H + V+++ + H A + + ++D
Sbjct: 1041 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVLID 1099
Query: 837 EIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ + +
Sbjct: 1100 EVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKH 1159
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1160 ILAKLEKY 1167
Score = 165 (63.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 901
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 902 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Score = 52 (23.4 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 222 SFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPP 281
S G+ SSSL + G T NTG S+ D +++ SS + T SS P
Sbjct: 672 SLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRD-----SLTGSSDLYKRTSSSLTP 726
Score = 43 (20.2 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 24 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 67
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 981 (350.4 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 190/364 (52%), Positives = 257/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 806 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 865
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 866 FIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGH 925
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 926 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 985
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQY
Sbjct: 986 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQY 1044
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1045 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 1104
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 1105 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1164
Query: 968 ARFE 971
A+ E
Sbjct: 1165 AKLE 1168
Score = 320 (117.7 bits), Expect = 9.5e-25, Sum P(2) = 9.5e-25
Identities = 75/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 981
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+
Sbjct: 982 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 1041
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 1042 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVL 1100
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 1101 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYG 1160
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1161 KHILAKLEKY 1170
Score = 160 (61.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 37/109 (33%), Positives = 56/109 (51%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L AER+L+ EIL + +M D F NYV
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL----QAAYQLMVDVFGNYV 902
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 903 IQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 951
Score = 53 (23.7 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 23/84 (27%), Positives = 32/84 (38%)
Query: 198 NRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKV 257
N +L Q S + S G+ SSSL + G T NTG S+
Sbjct: 649 NNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRR 708
Query: 258 DVSTAYNVSSSSHDWTATISSTPP 281
D +++ SS + T SS P
Sbjct: 709 D-----SLTGSSDLYKRTSSSLAP 727
Score = 43 (20.2 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 391 PLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLV 436
P A A PNP+ + PG + Y G +++GP +V
Sbjct: 415 PHIAGLAPAAFVPNPYIISAAPPG--TDPY-TAGLAAAATLGPAVV 457
Score = 43 (20.2 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 24 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 67
Score = 40 (19.1 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 24/105 (22%), Positives = 38/105 (36%)
Query: 440 PPHGGIAMVLDGSAGPSFHPQPXXXXXXXXXXXXXDMQYLNKIYGQFGFSLQPSFANPLH 499
P + + +VL G PQP + I G G S + +
Sbjct: 29 PANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSSPVP--GSI-GVAGRSQDDAMVD--- 82
Query: 500 LQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAA 544
++Q+ GE + G GS GG G +T+ H G ++ A
Sbjct: 83 -YFFQRQHGE--QLGGG----GSGGG--GYNTSKHRWPTGDNIHA 118
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 979 (349.7 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 190/364 (52%), Positives = 258/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 779 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 838
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 839 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 898
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 899 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 958
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQY
Sbjct: 959 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQY 1017
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1018 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 1077
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ +Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 1078 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHIL 1137
Query: 968 ARFE 971
A+ E
Sbjct: 1138 AKLE 1141
Score = 323 (118.8 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 75/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 895 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 954
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+
Sbjct: 955 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 1014
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 1015 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVL 1073
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 1074 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYG 1133
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1134 KHILAKLEKY 1143
Score = 165 (63.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 820 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 875
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 876 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 924
Score = 53 (23.7 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 23/84 (27%), Positives = 32/84 (38%)
Query: 198 NRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKV 257
N +L Q S + S G+ SSSL + G T NTG S+
Sbjct: 622 NNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRR 681
Query: 258 DVSTAYNVSSSSHDWTATISSTPP 281
D +++ SS + T SS P
Sbjct: 682 D-----SLTGSSDLYKRTSSSLTP 700
Score = 43 (20.2 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 391 PLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLV 436
P A A PNP+ + PG + Y G +++GP +V
Sbjct: 415 PHIAGLAPAAFVPNPYIISAAPPG--TDPY-TAGLAAAATLGPAVV 457
Score = 43 (20.2 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 24 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 67
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 979 (349.7 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 190/364 (52%), Positives = 258/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 841 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 900
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 901 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 960
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 961 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 1020
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQY
Sbjct: 1021 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQY 1079
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1080 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 1139
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ +Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 1140 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHIL 1199
Query: 968 ARFE 971
A+ E
Sbjct: 1200 AKLE 1203
Score = 323 (118.8 bits), Expect = 4.9e-25, Sum P(2) = 4.9e-25
Identities = 75/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 957 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 1016
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+
Sbjct: 1017 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 1076
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 1077 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVL 1135
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 1136 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYG 1195
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1196 KHILAKLEKY 1205
Score = 165 (63.1 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 937
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 938 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 986
Score = 53 (23.7 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 23/84 (27%), Positives = 32/84 (38%)
Query: 198 NRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKV 257
N +L Q S + S G+ SSSL + G T NTG S+
Sbjct: 684 NNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRR 743
Query: 258 DVSTAYNVSSSSHDWTATISSTPP 281
D +++ SS + T SS P
Sbjct: 744 D-----SLTGSSDLYKRTSSSLTP 762
Score = 43 (20.2 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 60 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 103
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 987 (352.5 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 190/362 (52%), Positives = 257/362 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 744 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 803
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 804 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 863
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPE 792
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+ P+
Sbjct: 864 VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQ 923
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
+ FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQYGN
Sbjct: 924 SLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQYGN 982
Query: 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILG 912
YV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 983 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 1042
Query: 913 HNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+A+
Sbjct: 1043 MNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK 1102
Query: 970 FE 971
E
Sbjct: 1103 LE 1104
Score = 329 (120.9 bits), Expect = 9.3e-25, Sum P(2) = 9.3e-25
Identities = 75/248 (30%), Positives = 128/248 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK E
Sbjct: 860 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIEC 919
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+DQ
Sbjct: 920 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQ 979
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E PE I++ G V LS H + V+++ + H A + + ++D
Sbjct: 980 YGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVLID 1038
Query: 837 EIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
E+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ + +
Sbjct: 1039 EVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKH 1098
Query: 890 VIEKCLAY 897
++ K Y
Sbjct: 1099 ILAKLEKY 1106
Score = 165 (63.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 785 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 840
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 841 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 889
Score = 43 (20.2 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 391 PLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLV 436
P A A PNP+ + PG + Y G +++GP +V
Sbjct: 432 PHIAGLAPAAFVPNPYIISAAPPG--TDPY-TAGLAAAATLGPAVV 474
Score = 43 (20.2 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 41 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 84
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 978 (349.3 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 190/364 (52%), Positives = 257/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 661 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 720
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 721 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 780
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 781 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 840
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQY
Sbjct: 841 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQY 899
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 900 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 959
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 960 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1019
Query: 968 ARFE 971
A+ E
Sbjct: 1020 AKLE 1023
Score = 320 (117.7 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 75/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 777 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 836
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+
Sbjct: 837 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 896
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 897 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVL 955
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 956 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYG 1015
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1016 KHILAKLEKY 1025
Score = 165 (63.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 702 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 757
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 758 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 806
Score = 52 (23.4 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 222 SFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPP 281
S G+ SSSL + G T NTG S+ D +++ SS + T SS P
Sbjct: 528 SLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRD-----SLTGSSDLYKRTSSSLTP 582
Score = 45 (20.9 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 401 ASPNPFYSNVQAPGFYSPQYGVGGYVMNSSI--GPPLVAGYPPHGGIAMVLDGSAG 454
AS P N G + V +NS++ G L AG P A +G+AG
Sbjct: 412 ASQRPLTPNQNQQGQQTDPL-VAAAAVNSALAFGQGLAAGMPAVAAAAASANGAAG 466
Score = 45 (20.9 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
Identities = 49/217 (22%), Positives = 71/217 (32%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYS-PQYGVGGYVM 427
HH P P+ PVV +SG A P P + A G +S P G G
Sbjct: 24 HH-PQEPANPNMPVVLTSG---------TGSQAQPQPAANQALAAGTHSSPVPGSIGVAG 73
Query: 428 NSSIGPPLVAGYPPHGGIAMVLDGSAGPSF----HPQPXXXXXXXXXXXXXDMQYLNKIY 483
S + + G + GS G + H P M LN +
Sbjct: 74 RSQDDAMVDYFFQRQHGEQLGGGGSGGGGYNNSKHRWPTGDNIHAEHQVRS-MDELNHDF 132
Query: 484 GQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFE--PLGS---KGGVLGSHTNSHELKK 538
+ P + GE N G F+ LG +G V+ TN ++
Sbjct: 133 QALALEGRAMGEGPRDADSDENDKGEKKN-KGTFDGDKLGDLKEEGDVMDK-TNGLPVQN 190
Query: 539 GSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGN 575
G D +DV+ F G +N + + P G+
Sbjct: 191 GID---ADVKDFSR-TPGNCQNSANEVDLLGPNQNGS 223
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 978 (349.3 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 190/364 (52%), Positives = 257/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 806 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 865
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 866 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 925
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 926 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 985
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQY
Sbjct: 986 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQY 1044
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1045 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 1104
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 1105 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1164
Query: 968 ARFE 971
A+ E
Sbjct: 1165 AKLE 1168
Score = 320 (117.7 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 75/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 981
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+
Sbjct: 982 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 1041
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 1042 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVL 1100
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 1101 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYG 1160
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1161 KHILAKLEKY 1170
Score = 165 (63.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 902
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 903 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 951
Score = 52 (23.4 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 222 SFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPP 281
S G+ SSSL + G T NTG S+ D +++ SS + T SS P
Sbjct: 673 SLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRD-----SLTGSSDLYKRTSSSLTP 727
Score = 43 (20.2 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 391 PLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLV 436
P A A PNP+ + PG + Y G +++GP +V
Sbjct: 415 PHIAGLAPAAFVPNPYIISAAPPG--TDPY-TAGLAAAATLGPAVV 457
Score = 43 (20.2 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 24 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 67
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 978 (349.3 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 190/364 (52%), Positives = 257/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 805 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 864
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 865 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 924
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 925 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 984
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQY
Sbjct: 985 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQY 1043
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1044 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 1103
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 1104 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1163
Query: 968 ARFE 971
A+ E
Sbjct: 1164 AKLE 1167
Score = 320 (117.7 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 75/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 980
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+
Sbjct: 981 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 1040
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 1041 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVL 1099
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 1100 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYG 1159
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1160 KHILAKLEKY 1169
Score = 165 (63.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 901
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 902 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Score = 52 (23.4 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 222 SFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPP 281
S G+ SSSL + G T NTG S+ D +++ SS + T SS P
Sbjct: 672 SLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRD-----SLTGSSDLYKRTSSSLTP 726
Score = 43 (20.2 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 24 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 67
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 978 (349.3 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 190/364 (52%), Positives = 257/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 841 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 900
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 901 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 960
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 961 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 1020
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQY
Sbjct: 1021 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQY 1079
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1080 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 1139
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 1140 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1199
Query: 968 ARFE 971
A+ E
Sbjct: 1200 AKLE 1203
Score = 320 (117.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 75/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 957 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 1016
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+
Sbjct: 1017 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 1076
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 1077 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVL 1135
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 1136 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYG 1195
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1196 KHILAKLEKY 1205
Score = 165 (63.1 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 937
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 938 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 986
Score = 52 (23.4 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 222 SFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPP 281
S G+ SSSL + G T NTG S+ D +++ SS + T SS P
Sbjct: 708 SLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRD-----SLTGSSDLYKRTSSSLTP 762
Score = 43 (20.2 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 369 HHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPG 414
HH P P+ PVV +SG AA A +S+ PG
Sbjct: 60 HH-PQEPANPNMPVVLTSGTGSQAQPQPAANQALAAGTHSS-PVPG 103
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 978 (349.3 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 190/364 (52%), Positives = 257/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S +S + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 517 FSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 576
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 577 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 636
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 637 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 696
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L QDQY
Sbjct: 697 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQDQY 755
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 756 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 815
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 816 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 875
Query: 968 ARFE 971
A+ E
Sbjct: 876 AKLE 879
Score = 320 (117.7 bits), Expect = 4.6e-25, Sum P(2) = 4.6e-25
Identities = 75/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 633 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 692
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE +Q ++ EL + V+
Sbjct: 693 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 752
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 753 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAVL 811
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 812 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYG 871
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 872 KHILAKLEKY 881
Score = 165 (63.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 558 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 613
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 614 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 662
Score = 52 (23.4 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 222 SFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPP 281
S G+ SSSL + G T NTG S+ D +++ SS + T SS P
Sbjct: 384 SLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRD-----SLTGSSDLYKRTSSSLTP 438
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 976 (348.6 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 189/364 (51%), Positives = 258/364 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S + + + G LE+ ++ + +L +I GHI+EFS DQHGSR
Sbjct: 806 FSPSSTLFPSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSR 865
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 866 FIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGH 925
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 926 VLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 985
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQY 850
P+ + FII AF GQV ALS HPYGCRVIQR+LEHC + Q I++E+ + L QDQY
Sbjct: 986 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPE-QTLPILEELHQHTEQLVQDQY 1044
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
GNYV QHVL+ G+P ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + ER ++I+E+
Sbjct: 1045 GNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEV 1104
Query: 911 LGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
N+ L TMMKDQ+ANYVVQK+ +++ +Q+ +++ +IR H L+KYTYGKHI+
Sbjct: 1105 CTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHIL 1164
Query: 968 ARFE 971
A+ E
Sbjct: 1165 AKLE 1168
Score = 327 (120.2 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 76/250 (30%), Positives = 128/250 (51%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 981
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
E P + + + GQ+ LS YGCRVIQ+ LE EQ ++ EL + V+
Sbjct: 982 ECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQ 1041
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A + + +
Sbjct: 1042 DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRTERAML 1100
Query: 835 VDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
+DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 1101 IDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYG 1160
Query: 888 SNVIEKCLAY 897
+++ K Y
Sbjct: 1161 KHILAKLEKY 1170
Score = 164 (62.8 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYV 902
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 903 IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQ 951
Score = 53 (23.7 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 23/84 (27%), Positives = 32/84 (38%)
Query: 198 NRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKV 257
N +L Q S + S G+ SSSL + G T NTG S+
Sbjct: 649 NNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRR 708
Query: 258 DVSTAYNVSSSSHDWTATISSTPP 281
D +++ SS + T SS P
Sbjct: 709 D-----SLTGSSDLYKRTSSSLTP 727
Score = 43 (20.2 bits), Expect = 9.6e-101, Sum P(2) = 9.6e-101
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 391 PLYASAAAYMASPNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLV 436
P A A PNP+ + PG + Y G +++GP +V
Sbjct: 415 PHIAGLAPAAFVPNPYIISAAPPG--TDPYAAG-LAAAATLGPAVV 457
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 981 (350.4 bits), Expect = 1.1e-101, Sum P(3) = 1.1e-101
Identities = 187/337 (55%), Positives = 244/337 (72%)
Query: 635 PKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEIL 694
P LE+ ++ + +L D+ HIVEFS DQHGSRFIQQKLE + EK VF EIL
Sbjct: 1090 PGRSRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEIL 1149
Query: 695 PHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIE 754
A LMTDVFGNYVIQKFFE+G+P Q+ L Q+ G +L L++QMYGCRVIQKALE+I
Sbjct: 1150 AAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESIS 1209
Query: 755 IEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYG 814
EQ+ ++V ELDG V++CV+DQNGNHV+QKCIEC+ P + FII+AF GQV +LS HPYG
Sbjct: 1210 PEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYG 1269
Query: 815 CRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKL 874
CRVIQR+LEHC + Q I+DE+ ++ L QDQYGNYV QHVL+ GK ++S +I +
Sbjct: 1270 CRVIQRILEHCTAE-QTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSV 1328
Query: 875 SGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKI 934
G ++ LSQHKFASNV+EKC+ + ER +I+E+ N+ L MMKDQ+ANYVVQK+
Sbjct: 1329 RGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKM 1388
Query: 935 FELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
++S +Q ++++IR H L+KYTYGKHI A+ E
Sbjct: 1389 IDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLE 1425
Score = 344 (126.2 bits), Expect = 4.0e-25, Sum P(3) = 4.0e-25
Identities = 74/245 (30%), Positives = 130/245 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY 716
+ GH+++ + +G R IQ+ LE+ S +++ + E+ H K + D GN+V+QK E
Sbjct: 1184 VKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIEC 1243
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ 776
P + + N GQ+ LS YGCRVIQ+ LE EQ ++ EL + ++DQ
Sbjct: 1244 VDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQ 1303
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
GN+VIQ +E E +I++ G+V LS H + V+++ + H A + + ++D
Sbjct: 1304 YGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTH-ATRGERTGLID 1362
Query: 837 EIL---DNVC-ALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIE 892
E+ DN + +DQY NYV Q ++ +P + K++ K+ H+ L ++ + ++
Sbjct: 1363 EVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINA 1422
Query: 893 KCLAY 897
K Y
Sbjct: 1423 KLEKY 1427
Score = 142 (55.0 bits), Expect = 0.00096, Sum P(3) = 0.00095
Identities = 33/110 (30%), Positives = 57/110 (51%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L+ HIV+ SQ + S I++ L AE++++ EIL ++M D F NYV
Sbjct: 1109 LRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILA----AAYSLMTDVFGNYV 1164
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR-FEMLIGEENQ 979
+QK FE + Q+ + +++ H L YG ++ + E + E+ Q
Sbjct: 1165 IQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQ 1214
Score = 42 (19.8 bits), Expect = 1.1e-101, Sum P(3) = 1.1e-101
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 484 GQFGFSLQPSFANPLHLQYYQQPFGEAYNISGQFEPLGSKGGV 526
GQ+ +L A H+ Y Q G Y+ G G GG+
Sbjct: 277 GQYNANLLNHAAALGHMSSYAQSGGSMYDHHGGAMHPGMNGGM 319
Score = 41 (19.5 bits), Expect = 1.1e-101, Sum P(3) = 1.1e-101
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 521 GSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSG---ETENPSTSKVTVSPYHMGNPP 577
GS GG G +H+ + + M+ G ++P + P HM +P
Sbjct: 591 GSGGGGAGGAYAAHQ-QMAAQMSQLQPPMMNGVGGGMPMAAQSPMLNHQAAGPNHMESPG 649
Query: 578 NM 579
N+
Sbjct: 650 NL 651
Score = 40 (19.1 bits), Expect = 1.8e-101, Sum P(3) = 1.8e-101
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 234 PS-VISSNGVSTTTGAHNTGVSSKVDVSTA----YNVSSSSHDWTATISSTPP-TEEVTS 287
PS + G S T+ + N G+ S D + A Y S S + +++S P +
Sbjct: 431 PSRAYAHGGASDTSNSGNAGILSPRDSTCAKVVEYVFSGSPTNKDSSLSGLEPHLRNLKF 490
Query: 288 NDTD 291
+D D
Sbjct: 491 DDND 494
Score = 40 (19.1 bits), Expect = 2.2e-99, Sum P(2) = 2.2e-99
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 225 YSDSSSLRDPSVI--SSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATIS 277
+ S+S PS + +S+GV+ A N+ V+ + A +++ W +S
Sbjct: 903 FDRSTSAFSPSTMDYTSSGVAAAANAVNSTVAQAAAAAAA--AAAARGKWPGAMS 955
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 956 (341.6 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 189/365 (51%), Positives = 256/365 (70%)
Query: 613 FSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSR 672
FSP S + + + G LE+ ++ + +L +I GH++EFS DQHGSR
Sbjct: 770 FSPSSQLFPSSRLRYGMSDVMPSGRSRLLEDFRNNRYPNLQLREIAGHVMEFSQDQHGSR 829
Query: 673 FIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ 732
FIQ KLE S E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+ LA ++ G
Sbjct: 830 FIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLDQKLALAERIRGH 889
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
+L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQNGNHV+QKCIEC+
Sbjct: 890 VLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQ 949
Query: 791 PEKIGFIISAFCGQ-VAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQ 849
P + FII AF GQ V ALS HPYGCRVIQR+LEHC + Q I++EI + L QDQ
Sbjct: 950 PHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCLPE-QTLSILEEIHQHTEQLVQDQ 1008
Query: 850 YGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEE 909
YGNYV QHVL+ G+ ++SKI+ ++ G+++ LSQHKFASNV+EKC+ + AER ++I+E
Sbjct: 1009 YGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEKCVTHSLRAERAMLIDE 1068
Query: 910 ILGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHI 966
+ + L TMMKDQ+ANYVVQK+ +++ +Q+ +++ +IR H L+KYTYGKHI
Sbjct: 1069 VCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHIATLRKYTYGKHI 1128
Query: 967 VARFE 971
+A+ E
Sbjct: 1129 LAKLE 1133
Score = 304 (112.1 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 74/251 (29%), Positives = 125/251 (49%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDEKA--SVFKEILPHASKLMTDVFGNYVIQKFF 714
I GH++ + +G R IQ+ LE D++ + +E+ H K + D GN+V+QK
Sbjct: 886 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 945
Query: 715 EYGSPAQRKELANQLVGQ-ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCV 773
E P + + + GQ + LS YGCRVIQ+ LE EQ ++ E+ + V
Sbjct: 946 ECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHTEQLV 1005
Query: 774 RDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQF 833
+DQ GN+VIQ +E E I+S G V LS H + V+++ + H +
Sbjct: 1006 QDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEKCVTHSLRAERAM- 1064
Query: 834 IVDEIL---DN----VCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKF 886
++DE+ D + + +DQY NYV Q ++ +P +R ++ K+ HI L ++ +
Sbjct: 1065 LIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHIATLRKYTY 1124
Query: 887 ASNVIEKCLAY 897
+++ K Y
Sbjct: 1125 GKHILAKLEKY 1135
Score = 166 (63.5 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 37/109 (33%), Positives = 57/109 (52%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R+++GH+++ SQ + S I+ L PAER+L+ EIL + +M D F NYV
Sbjct: 811 LREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEIL----QAAYQLMVDVFGNYV 866
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 867 IQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 915
Score = 48 (22.0 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 22/80 (27%), Positives = 31/80 (38%)
Query: 673 FIQQKLENCSVDEKASVFKEILPH---ASKLMTDVFGNYVIQKFFEYGSPAQRKELANQL 729
F + +N ++D SV E L +L D V F+Y SP Q + N L
Sbjct: 311 FSNVETQNVTLDPMESVSMETLQFEYPGGQLPLDSTAATV--GLFDYNSPQQLFQRPNAL 368
Query: 730 -VGQILPLSMQMYGCRVIQK 748
V Q+ Q Y Q+
Sbjct: 369 AVQQLTAAQQQQYALAAAQQ 388
Score = 43 (20.2 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 209 FPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSS 268
F + S+ N S F + +SSL + G T A+++ S+ D T SS
Sbjct: 623 FSQGSAQPGNTSLGFNANPTSSLGATLGAALGGFGTAEVANSSSSGSRRDSLTG---SSD 679
Query: 269 SHDWTATISSTP 280
+ TA+ S TP
Sbjct: 680 LYKRTAS-SLTP 690
Score = 39 (18.8 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 372 PSRPSTAVQPVVQSSGFTP 390
P RP ++ V+ ++G TP
Sbjct: 27 PDRPLPSMPVVLSAAGHTP 45
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 863 (308.9 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 163/330 (49%), Positives = 230/330 (69%)
Query: 646 SGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHAS-KLMTDV 704
+ K R FELSDI G++V FS DQHGSRFIQQKL + +E+ +VF+EI + +LM D+
Sbjct: 386 ANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDI 445
Query: 705 FGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRE 764
FGNYV+QK+FE+G+ Q++ L +Q+ G + LS+QMYGCRV+QKA+E I E + QL++E
Sbjct: 446 FGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQE 505
Query: 765 LDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEH 824
LDG V+ CV DQNGNHVIQK IECI + FI+ A Q+ LS HPYGCRVIQR +EH
Sbjct: 506 LDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEH 565
Query: 825 CADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQH 884
C + + I++E+L ++ L QDQYGNYV QH+L+ G ++ I + H++ LS H
Sbjct: 566 CHSERK--LIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCH 623
Query: 885 KFASNVIEKCLAYGGPAERELIIEEILGHNEET---LLTMMKDQFANYVVQKIFELSSES 941
KFASNV+E+C++Y +R I+ +I+ E L+ MMKD++ANYV+QK+ + S E
Sbjct: 624 KFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEE 683
Query: 942 QQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
++ +++S I H VLKK+TYGKH++ E
Sbjct: 684 ERDLLISYIYPHISVLKKFTYGKHLIMSVE 713
Score = 279 (103.3 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 72/255 (28%), Positives = 122/255 (47%)
Query: 643 ELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMT 702
E + K ++ LS I GH+ S +G R +Q+ +E S + + + +E+ H +
Sbjct: 456 EFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVC 515
Query: 703 DVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLV 762
D GN+VIQK E + + L QI LS YGCRVIQ+A+E E+K ++
Sbjct: 516 DQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERKL-II 574
Query: 763 RELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVL 822
EL +++ +DQ GN+V+Q + +I + LS H + V++R +
Sbjct: 575 EELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCI 634
Query: 823 EHCADKHQCQF---IVDEILDNVCALA---QDQYGNYVTQHVLQRGKPLERSKIIRKLSG 876
+ +D + + I+ E +N L +D+Y NYV Q +L ER +I +
Sbjct: 635 SYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYP 694
Query: 877 HIVQLSQHKFASNVI 891
HI L + + ++I
Sbjct: 695 HISVLKKFTYGKHLI 709
Score = 151 (58.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 37/104 (35%), Positives = 55/104 (52%)
Query: 876 GHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIF 935
G++V S + S I++ LA ERE + +EI + L +M D F NYVVQK F
Sbjct: 399 GNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIAS---TSCLQLMMDIFGNYVVQKYF 455
Query: 936 ELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
E +E Q+ ++LS+I+ H L YG +V + I E+Q
Sbjct: 456 EFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQ 499
Score = 57 (25.1 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 45 DVHGSVQRAVPNRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNG-NIRNSES 99
D+ Q ++ + SGS P+ +GSF + +L+A +S + AN N ++N S
Sbjct: 247 DLTTITQSSISSGSGSFKPSWDGSFDS--SLMAHQSYGTSPAFANGNSPTLKNDSS 300
Score = 45 (20.9 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 224 GYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTP 280
G S +SS + S+ISSN T H + + ++ +Y+ S W + +P
Sbjct: 46 GTSPTSSFFNSSMISSN----YTFPHGSNKQASLESPVSYSNPIPSLTWLSLDGDSP 98
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 873 (312.4 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 168/338 (49%), Positives = 242/338 (71%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKF 713
L DI +++EF+ DQHGSRFIQQKLE S+ +KA++F +L +A +LMTDVFGNYVIQKF
Sbjct: 340 LQDIKNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKF 399
Query: 714 FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCV 773
FE+G+ QR +L + G ++ L++QMYGCRVIQKALE +E + + +++ E++GQV++CV
Sbjct: 400 FEFGNNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCV 459
Query: 774 RDQNGNHVIQKCIECIPPEKIGFIISAFC----GQVAALSMHPYGCRVIQRVLEHCADKH 829
+DQNGNHVIQK IE + PE++ FII AF V LS+HPYGCRVIQRVLE+C ++
Sbjct: 460 KDQNGNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYC-NEE 518
Query: 830 QCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRK-LSGHIVQLSQHKFAS 888
Q Q ++D + ++ L DQYGNYV QHV++ G P ++ +I++ +S +++ +QHKFAS
Sbjct: 519 QKQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFAS 578
Query: 889 NVIEKCLAYGGPAERELIIEEILGH-NEET--LLTMMKDQFANYVVQKIFELSSESQQAM 945
NVIEKCL +GG AER LII+++ G N+ + LL MMKD FANYVVQK+ +++ +
Sbjct: 579 NVIEKCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKK 638
Query: 946 MLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTSES 983
+ I+ H L+KY +GKHI+ + E ++ + S
Sbjct: 639 ITLTIKPHIATLRKYNFGKHILLKLEKYFAKQAPANSS 676
Score = 263 (97.6 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 66/235 (28%), Positives = 119/235 (50%)
Query: 721 QRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNH 780
Q + + ++ + +G R IQ+ LE + KA + + + D GN+
Sbjct: 335 QTPKTLQDIKNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNY 394
Query: 781 VIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILD 840
VIQK E E+ ++ G V L++ YGCRVIQ+ LE+ +K+Q + I+ E+
Sbjct: 395 VIQKFFEFGNNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHE-ILGEMEG 453
Query: 841 NVCALAQDQYGNYVTQHVLQRGKPLERSKII-----RKLSGHIVQLSQHKFASNVIEKCL 895
V +DQ GN+V Q V++R +P ER + I + S ++ LS H + VI++ L
Sbjct: 454 QVLKCVKDQNGNHVIQKVIERVEP-ERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVL 512
Query: 896 AYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRI 950
Y +++ +++ + H ++ +L DQ+ NYV+Q + E S S + ++ +
Sbjct: 513 EYCNEEQKQPVLDALQIHLKQLVL----DQYGNYVIQHVIEHGSPSDKEQIVQDV 563
Score = 248 (92.4 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 73/274 (26%), Positives = 123/274 (44%)
Query: 643 ELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMT 702
E + + R + I G++++ + +G R IQ+ LE + + E+ K +
Sbjct: 401 EFGNNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVK 460
Query: 703 DVFGNYVIQKFFEYGSPAQRKELANQLV----GQILPLSMQMYGCRVIQKALETIEIEQK 758
D GN+VIQK E P + + + + + LS+ YGCRVIQ+ LE EQK
Sbjct: 461 DQNGNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQK 520
Query: 759 AQLVRELDGQVMRCVRDQNGNHVIQKCIEC-IPPEKIGFIISAFCGQVAALSMHPYGCRV 817
++ L + + V DQ GN+VIQ IE P +K + + + H + V
Sbjct: 521 QPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNV 580
Query: 818 IQRVLEHCADKHQCQFIVDEILDN-------VCALAQDQYGNYVTQHVLQRGKPLERSKI 870
I++ L + I+D++ + + + +D + NYV Q +L P R KI
Sbjct: 581 IEKCLTFGGHAER-NLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKKI 639
Query: 871 IRKLSGHIVQLSQHKFASNVI---EKCLAYGGPA 901
+ HI L ++ F +++ EK A PA
Sbjct: 640 TLTIKPHIATLRKYNFGKHILLKLEKYFAKQAPA 673
Score = 38 (18.4 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 225 YSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYN 264
Y+D S + P +IS S G S V+TA+N
Sbjct: 15 YADHS-IAKPIMISGGHPSQDQGHSPKSESFGQSVTTAFN 53
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 769 (275.8 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 160/337 (47%), Positives = 222/337 (65%)
Query: 647 GKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFG 706
GK +RFEL DI GHIVEFS DQ+GSRF+QQK+E + DEK VF+EILP+ +L D+FG
Sbjct: 450 GKNKRFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFG 509
Query: 707 NYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELD 766
NYV QK +E+G+ Q+K + + +++ LS+ YGCRV+QKALE + +Q+A LVRE+
Sbjct: 510 NYVAQKLYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQ 569
Query: 767 GQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA 826
QV+ CV Q+GNHVIQK E +P + ++ +F GQV S H YGCRVIQR+LE C
Sbjct: 570 PQVLECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCE 629
Query: 827 DKHQCQFIVDEILDNVCA--LAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQH 884
D + +FI+ EI CA L +DQYGNYV QH++Q G+ +RS +I + ++ S+H
Sbjct: 630 DVDR-RFILAEI--RACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWYSKH 686
Query: 885 KFASNVIEKCLAYGGPAERELIIEEILGHNE--ET-LLTMMKDQFANYVVQKIFELSSES 941
KFASNV+EK + +G A+R+ II + E ET L+ +M DQ+ NYV QK+ S
Sbjct: 687 KFASNVVEKSIEFGNEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVLGHLSGV 746
Query: 942 QQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEEN 978
++A ++ RI+ LKK GK I A E LIG+ +
Sbjct: 747 ERAALVDRIKPLLVHLKKSNCGKQIAA-IEKLIGDSS 782
Score = 138 (53.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 42/220 (19%), Positives = 99/220 (45%)
Query: 762 VRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRV 821
++++ G ++ DQ G+ +Q+ IE ++ + L+ +G V Q++
Sbjct: 457 LKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYVAQKL 516
Query: 822 LEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQL 881
EH ++ Q + + +++ V L+ YG V Q L+ +++ ++R++ +++
Sbjct: 517 YEH-GNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQVLEC 575
Query: 882 SQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSES 941
+ + ++VI+K Y + +++ G E + V+Q++ E +
Sbjct: 576 VESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVER----QSTHSYGCRVIQRMLEFCEDV 631
Query: 942 QQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTS 981
+ +L+ IR A L + YG +++ + GEE S
Sbjct: 632 DRRFILAEIRACAPRLIEDQYGNYVIQHI-IQSGEEEDRS 670
Score = 48 (22.0 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 212 SSSPVYNQSHSFGY-----SDSSSLRDPSVISSNGVSTTTG 247
++SPV N+S+ G +D+SS SV S+ G S TG
Sbjct: 82 ATSPVQNRSNDLGGVLVDGNDASSYFTQSVSSTLGPSPGTG 122
Score = 47 (21.6 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 213 SSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDW 272
SS + S S G+ ++ PS NG++T+ + + V V S +
Sbjct: 52 SSSLLPSSESDGWDIRRNVPWPSRAQGNGMATSPVQNRSNDLGGVLVDGNDASSYFTQSV 111
Query: 273 TATISSTPPTEEVTSNDT 290
++T+ +P T +VT D+
Sbjct: 112 SSTLGPSPGTGQVTYLDS 129
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 731 (262.4 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
Identities = 156/364 (42%), Positives = 230/364 (63%)
Query: 605 LGGRNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEF 664
+G + + F +N +G G G Y P LEE++S + ++L DI GH +EF
Sbjct: 542 VGSKRKGNFKGKNNTTNG--G--GNHIYRSP----LLEEVRSNP-KPYQLKDIYGHAIEF 592
Query: 665 SADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKE 724
+ DQHGSRFIQQKL + +EK ++F EI + +LMTDVFGNYVIQK+FEYG+ Q++
Sbjct: 593 TKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQV 652
Query: 725 LANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQK 784
L ++G I LS+QMYGCRV+Q+ALE I+ E + +++ EL ++ C +DQNGNHVIQK
Sbjct: 653 LLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCKDQNGNHVIQK 712
Query: 785 CIECIPP-EKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVC 843
IE I P +I +I+++ Q+ LS HPYGCRVIQR+LE+ +D + I+ ++ + +
Sbjct: 713 SIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEY-SDIDDQKLILSQLNNFLY 771
Query: 844 ALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAER 903
L DQYGNYV QH+L+ G E+ I+ + G +VQ S+HKFASNVIEKC+ +G +R
Sbjct: 772 YLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKCIKFGDINQR 831
Query: 904 ELIIEEILGHNE----------------ETLLTMMKDQFANYVVQKIFELSSESQQAMML 947
+ I+ E++ NE L M+KDQF NYV+QK+ E ++ +++
Sbjct: 832 KRILHEVMLGNETILGDDDIDGEPVKEDSPLALMVKDQFGNYVIQKLVEAFDGDERKLLI 891
Query: 948 SRIR 951
+I+
Sbjct: 892 IKIK 895
Score = 278 (102.9 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 67/252 (26%), Positives = 127/252 (50%)
Query: 729 LVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIEC 788
+ G + + +G R IQ+ L E+K + E+ + D GN+VIQK E
Sbjct: 585 IYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEY 644
Query: 789 IPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQD 848
+ ++ + G + LS+ YGCRV+QR LE ++ Q + I++E+ D++ +D
Sbjct: 645 GTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLR-IIEELKDHILICCKD 703
Query: 849 QYGNYVTQHVLQRGKPLERSK-IIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELII 907
Q GN+V Q +++ KP + + I+ L I LS H + VI++ L Y +++LI+
Sbjct: 704 QNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLIL 763
Query: 908 EEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
++ L ++ DQ+ NYV+Q I E ++ ++ +L + K+ + +++
Sbjct: 764 SQL----NNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVI 819
Query: 968 ARFEMLIGEENQ 979
+ + G+ NQ
Sbjct: 820 EKC-IKFGDINQ 830
Score = 138 (53.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 36/130 (27%), Positives = 63/130 (48%)
Query: 851 GNYVTQH-VLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEE 909
GN++ + +L+ + + ++ + GH ++ ++ + S I++ L E+E I E
Sbjct: 561 GNHIYRSPLLEEVRSNPKPYQLKDIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNE 620
Query: 910 ILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
I E +M D F NYV+QK FE + +Q+ ++L + H H L YG +V R
Sbjct: 621 IW----EISYELMTDVFGNYVIQKYFEYGTTTQKQVLLESMIGHIHELSLQMYGCRVVQR 676
Query: 970 FEMLIGEENQ 979
I E Q
Sbjct: 677 ALEAIDNEGQ 686
Score = 124 (48.7 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 44/176 (25%), Positives = 83/176 (47%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKF 713
LS + + DQ+G+ IQ LEN + +EK + + +L + F + VI+K
Sbjct: 763 LSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKC 822
Query: 714 FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCV 773
++G QRK + +++ M G I L +I+ + V+E D + V
Sbjct: 823 IKFGDINQRKRILHEV----------MLGNETI---LGDDDID--GEPVKE-DSPLALMV 866
Query: 774 RDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKH 829
+DQ GN+VIQK +E ++ +I ++ S + R I+ +++H ++ +
Sbjct: 867 KDQFGNYVIQKLVEAFDGDERKLLIIKIKKCLSLSSNNLASIRNIRNIIDHVSESN 922
Score = 52 (23.4 bits), Expect = 7.5e-76, Sum P(2) = 7.5e-76
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 369 HHGPSR-PSTAVQPVVQSSGFTPPLYASAAAYMASP-NPFYSNVQAPGFYSPQYGVGGYV 426
+HGP P P G + S A++M P NP+ +P P+ +GG
Sbjct: 414 YHGPGPVPGPGPGPGPIGVGLMNRQF-SPASFMFHPFNPYSMYQSSPPLVPPEAALGG-- 470
Query: 427 MNSSIGPP 434
M S PP
Sbjct: 471 MASPPPPP 478
Score = 39 (18.8 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 31/113 (27%), Positives = 39/113 (34%)
Query: 439 YPPHGGIAMVLDGSAGPSFHPQPXXXXXXXXXXXXXDMQYLNKIYGQFGFSLQPSFANPL 498
YPP GG A G A S P P Y + +YG G P P
Sbjct: 309 YPPRGGNASN-SGGAN-SISPPPPFMIPSPPPPFLDPSVY-SMMYG--GNFPPPPPPPPS 363
Query: 499 HLQYYQQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQ 551
Q QQP S Q +P S + TNS K + SD ++ +
Sbjct: 364 QQQQQQQP-------SQQQQPSHSNQDKKANETNS----KSKETKYSDTESHE 405
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 724 (259.9 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 161/366 (43%), Positives = 228/366 (62%)
Query: 626 QRGFESYNDPKICNFLEELKSGKGRRFELS--DITGHIVEFSADQHGSRFIQQKLENCSV 683
Q+ ++Y+ + L S K +S DI GH +EF DQHGSRFIQ++L
Sbjct: 506 QQQQQTYHRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPA 565
Query: 684 DEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGC 743
EK +F EI A +L DVFGNYVIQKFFE+GS Q+ L +Q G + LS+QMY C
Sbjct: 566 SEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYAC 625
Query: 744 RVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCG 803
RVIQKALE I+ Q+ +LV EL V++ ++DQNGNHVIQK IE IP EK+ FI+S+ G
Sbjct: 626 RVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTG 685
Query: 804 QVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQR-- 861
+ LS H YGCRVIQR+LE + + Q + I++E+ D + L QDQYGNYV Q+VLQ+
Sbjct: 686 HIYHLSTHSYGCRVIQRLLEFGSSEDQ-ESILNELKDFIPYLIQDQYGNYVIQYVLQQDQ 744
Query: 862 --GKPLE--RSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEIL----GH 913
K + + +II ++ ++V+ S+HKFASNV+EK + YG +++LII +IL H
Sbjct: 745 FTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNH 804
Query: 914 -----NEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKY-TYGKHIV 967
++ ++ M+KDQFANYV+QK+ +S + +++ IR + L K + G +
Sbjct: 805 ALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHL 864
Query: 968 ARFEML 973
A E L
Sbjct: 865 ASVEKL 870
Score = 207 (77.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 52/170 (30%), Positives = 90/170 (52%)
Query: 813 YGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIR 872
+G R IQR L + + + I +EI D+ L+ D +GNYV Q + G ++++ ++
Sbjct: 551 HGSRFIQRELA-TSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVD 609
Query: 873 KLSGHIVQLSQHKFASNVIEKCLAYGGPAER-ELIIEEILGHNEETLLTMMKDQFANYVV 931
+ G++ QLS +A VI+K L Y +R EL++E +++L M+KDQ N+V+
Sbjct: 610 QFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLEL-----SDSVLQMIKDQNGNHVI 664
Query: 932 QKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTS 981
QK E + +LS + H + L ++YG ++ R E+Q S
Sbjct: 665 QKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQES 714
Score = 50 (22.7 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 200 NLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVST-TTGAHNTGVSSKVD 258
N + +K ++ N++H S++++ + + N + T T N SSK +
Sbjct: 429 NPIPVKMPKDEKTFKKRNNKNHPANNSNNAN-KQANPYLENSIPTKNTSKKNA--SSKSN 485
Query: 259 VSTAYNVSSSSH 270
STA N S SH
Sbjct: 486 ESTANNHKSHSH 497
Score = 43 (20.2 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 370 HGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFY 407
HG S S + S G PP ++ + + +Y
Sbjct: 71 HGSSESSPIFKKTALSVGTAPPFSTNSKKFFGNGGNYY 108
Score = 41 (19.5 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 48/246 (19%), Positives = 86/246 (34%)
Query: 193 KVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTG 252
K G N + D SS YN H+ + +++L +N V+ G ++
Sbjct: 99 KFFGNGGNYYQYRSTDTASLSSASYNNYHT--HHTAANLG-----KNNKVNHLLGQYSAS 151
Query: 253 VSSKVDVSTAYNVSSSSHDWTATISST--PPTEEVTSNDTDIWTKDEVLXXXXXXXXXXX 310
++ V + N +S + + T E+ S D + + +
Sbjct: 152 IAGPVYYNGNDNNNSGGEGFFEKFGKSLIDGTRELESQD-----RPDAVNTQSQFISKSV 206
Query: 311 XXXNMKDFNTGHSNLGNQKNQAQLNVHXXXXXXXXXENAHSQVS-SLGLIGTHIGMDQFH 369
++ NT N+ + KN +LN + +++S S SL H
Sbjct: 207 SNASLDTQNTFEQNVESDKNFNKLNRNTTNSGSLYHSSSNSGSSASLESENAHYPKRNIW 266
Query: 370 HGPS----RPSTAVQPVVQSSGFTP-----PLYASAAAYMAS--PNPFYSNVQAPGFYS- 417
+ + RPS V ++ P P + YM PN F+ Q P + +
Sbjct: 267 NVANTPVFRPSNNPAAVGATNVALPNQQDGPANNNFPPYMNGFPPNQFH---QGPHYQNF 323
Query: 418 PQYGVG 423
P Y +G
Sbjct: 324 PNYLIG 329
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 682 (245.1 bits), Expect = 6.4e-74, Sum P(4) = 6.4e-74
Identities = 168/423 (39%), Positives = 242/423 (57%)
Query: 558 TENPS--TSKVTVSPYHMGNPPNMGMFVYXXXXXXXXXXXXXXVVGTGLLGGRNEMRFSP 615
T PS +S + S H+G PN G Y + L +++ F P
Sbjct: 751 TPPPSLPSSHGSSSSIHLGGLPN-GSGRYISAAPGAEAKYRSSGSTSSLFSSSSQL-FPP 808
Query: 616 VSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQ 675
RYS S LE+ ++ + +L D+ GH+VEFS DQHGSRFIQ
Sbjct: 809 PRARYSRSDVMPSGRS-------RLLEDFRNNRFPNLQLRDLPGHMVEFSQDQHGSRFIQ 861
Query: 676 QKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILP 735
QKLE + E+ VF EIL A +LMTDVFGNYVIQKFFE+GS Q+ LA ++ G +LP
Sbjct: 862 QKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLP 921
Query: 736 LSMQMYGCRVIQKALETIEIEQK--AQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEK 793
L++QMYGCRVIQKALE+I +Q+ + +VRELDG V++CV+DQNGNHV+QKCIEC+ P+
Sbjct: 922 LALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCIECVQPQA 981
Query: 794 IGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNY 853
+ FII AF GQV LS HPYGCRVIQR+LEHC + Q I++E+ + +Q G
Sbjct: 982 LQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQE-QTLPILEELHQH-----SEQLGQK 1035
Query: 854 VTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGH 913
T L+ K +R S + L + ++ + VI+ L +G P ++ I+ E+ G
Sbjct: 1036 NTSVQLK-----VTFKGLRICSFDL--LFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGK 1088
Query: 914 NEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRI-----RTHA--HVLKKYTYGKHI 966
+L + + +FA+ VV+K SS +++A+++ + H+ + + K Y ++
Sbjct: 1089 ----VLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGPHSALYTMMKDQYANYV 1144
Query: 967 VAR 969
V R
Sbjct: 1145 VQR 1147
Score = 435 (158.2 bits), Expect = 3.3e-37, Sum P(4) = 3.3e-37
Identities = 111/336 (33%), Positives = 180/336 (53%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
LE S + R+ +I + D G+ IQ+ E S D+K ++ I H L
Sbjct: 864 LERATSAE-RQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPL 922
Query: 701 MTDVFGNYVIQKFFEYGSPAQR--KELANQLVGQILPLSMQMYGCRVIQKALETIEIEQK 758
++G VIQK E S Q+ ++ +L G +L G V+QK +E ++ +
Sbjct: 923 ALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCIECVQPQAL 982
Query: 759 AQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVI 818
++ GQV G VIQ+ +E E+ I+ +H + ++
Sbjct: 983 QFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILE---------ELHQHSEQLG 1033
Query: 819 QRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHI 878
Q+ + + + + F I + L +DQYGNYV QHVL+ G+P ++SKI+ ++ G +
Sbjct: 1034 QK---NTSVQLKVTFKGLRIC-SFDLLFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKV 1089
Query: 879 VQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIF 935
+ LSQHKFASNV+EKC+ + AER L+I+E+ + L TMMKDQ+ANYVVQ++
Sbjct: 1090 LALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMI 1149
Query: 936 ELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
+++ +Q+ +++ +IR H L+KYTYGKHI+A+ E
Sbjct: 1150 DMAEPAQRKIIMHKIRPHIATLRKYTYGKHILAKLE 1185
Score = 200 (75.5 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 66/275 (24%), Positives = 133/275 (48%)
Query: 638 CNFLEE-LKSGKGRRFELSDIT----GHIVEFSADQHGSRFIQQKLENCSVDEKASVFKE 692
C +++ L+S + +SDI GH+++ DQ+G+ +Q+ +E C
Sbjct: 929 CRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCIE-C----------- 976
Query: 693 ILPHASKLMTDVF-GNYVIQKFFEYGSPAQRKELANQLVGQILPL--SMQMYGCRVIQKA 749
+ P A + + D F G + YG ++ L + Q LP+ + + ++ QK
Sbjct: 977 VQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEELHQHSEQLGQKN 1036
Query: 750 LETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALS 809
+++++ + +R ++ +DQ GN+VIQ +E PE I++ G+V ALS
Sbjct: 1037 T-SVQLKVTFKGLRICSFDLL--FKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKVLALS 1093
Query: 810 MHPYGCRVIQRVLEHCADKHQCQFIVDEIL---DN----VCALAQDQYGNYVTQHVLQRG 862
H + V+++ + H + + + ++DE+ D + + +DQY NYV Q ++
Sbjct: 1094 QHKFASNVVEKCVIH-SSRAERALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMA 1152
Query: 863 KPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAY 897
+P +R I+ K+ HI L ++ + +++ K Y
Sbjct: 1153 EPAQRKIIMHKIRPHIATLRKYTYGKHILAKLEKY 1187
Score = 158 (60.7 bits), Expect = 3.9e-07, Sum P(4) = 3.9e-07
Identities = 37/109 (33%), Positives = 56/109 (51%)
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
+R L GH+V+ SQ + S I++ L AER+++ EIL + +M D F NYV
Sbjct: 840 LRDLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEIL----QAAYQLMTDVFGNYV 895
Query: 931 VQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
+QK FE S Q+ + +RIR H L YG ++ + I + Q
Sbjct: 896 IQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQ 944
Score = 51 (23.0 bits), Expect = 3.0e-71, Sum P(3) = 3.0e-71
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 218 NQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSH 270
+QS S +S +S+ PS +S G S+T+G+ G+ S + + +VSSS++
Sbjct: 649 SQSSSL-FSHTSAAPPPS--TSLGFSSTSGSLGVGLGSALGAFGS-SVSSSTN 697
Score = 49 (22.3 bits), Expect = 4.9e-71, Sum P(3) = 4.9e-71
Identities = 16/64 (25%), Positives = 25/64 (39%)
Query: 517 FEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPSTSKVTVSPYHMGNP 576
F P + G S T + E + G A ++ H + + NP T+K +
Sbjct: 292 FNP--TPGSRQASPTEAVE-RLGPSQAGLEIMVQHHQHTLQAPNPVTNKPPPEDFQSQEA 348
Query: 577 PNMG 580
NMG
Sbjct: 349 QNMG 352
Score = 47 (21.6 bits), Expect = 6.4e-74, Sum P(4) = 6.4e-74
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 520 LGSKGGVLGSHTNSHELKKGSDMAASDV 547
LG+ G + S TNS +++ S +A+S++
Sbjct: 685 LGAFGSSVSSSTNSSAVRRDSLLASSEL 712
Score = 47 (21.6 bits), Expect = 6.4e-74, Sum P(4) = 6.4e-74
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 403 PNPFYSNVQAPGFYSPQYGVGGYVMNSSIGPPLVAGYPP 441
PNP+ N PG + Y G +++ P V PP
Sbjct: 430 PNPYIINAAPPG--ADPYTAAGLAAAATLAGPAVV--PP 464
Score = 45 (20.9 bits), Expect = 6.4e-74, Sum P(4) = 6.4e-74
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 165 SEDDRSPKHFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQED 208
S+DD + +F + G C+GN+ G ++ ++ D
Sbjct: 76 SQDDATVGYFFQRQPGEQMGGCTGNKHRWPTGDGNHVDQLRSVD 119
Score = 44 (20.5 bits), Expect = 3.3e-37, Sum P(4) = 3.3e-37
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 348 NAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFY 407
++H SS+ L G G ++ + P + +SSG T L++S++ P Y
Sbjct: 758 SSHGSSSSIHLGGLPNGSGRYIS--AAPGAEAK--YRSSGSTSSLFSSSSQLFPPPRARY 813
Query: 408 S 408
S
Sbjct: 814 S 814
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 136/331 (41%), Positives = 219/331 (66%)
Query: 650 RRFELSDITGHIVEFSADQHGSRFIQQKLENCSVD--EKASVFKEILPHASKLMTDVFGN 707
+ +LSDI G +++F+ DQ GSRFIQQ+L + S D EK S+F E++ +A +L+ D+FGN
Sbjct: 188 KNLKLSDIRGALLKFAKDQVGSRFIQQELAS-SKDRFEKDSIFDEVVSNADELVDDIFGN 246
Query: 708 YVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDG 767
YV+QKFFEYG L + ++ ++ + QMY CRV+QKALE I + +++ ++
Sbjct: 247 YVVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRH 306
Query: 768 QVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFC---GQVAALSMHPYGCRVIQRVLEH 824
+ RC++DQNGNHV+QK IE + P+ + FI+ + +S+ PYGCRV+QR LEH
Sbjct: 307 VIHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEH 366
Query: 825 CADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQH 884
C+ Q + ++ +I +A +QYGNYV QHV++ G +R I+ ++S ++ + + H
Sbjct: 367 CSPS-QTKPVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATH 425
Query: 885 KFASNVIEKCLAYGGPAERELIIEEILGHNEETL---LTMMKDQFANYVVQKIFE-LSSE 940
K++SNVIEKCL G + +I+ H E ++ + MMKDQ+ANYVVQK+F+ ++SE
Sbjct: 426 KYSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSE 485
Query: 941 SQQAMMLSRIRTHAHVLKKYTYGKHIVARFE 971
++ ++L+ +R H VL+++ +GKHI+A+ E
Sbjct: 486 QRRELILT-VRPHIPVLRQFPHGKHILAKLE 515
Score = 222 (83.2 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 66/262 (25%), Positives = 118/262 (45%)
Query: 647 GKGRRF-ELSD-ITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDV 704
G+ R + L D I + E++ + R +Q+ LE + + + +I + M D
Sbjct: 256 GEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRHVIHRCMKDQ 315
Query: 705 FGNYVIQKFFEYGSPAQRKELANQLV---GQILPLSMQMYGCRVIQKALETIEIEQKAQL 761
GN+V+QK E SP + + + L+ I +S+ YGCRV+Q+ LE Q +
Sbjct: 316 NGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPV 375
Query: 762 VRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRV 821
+ ++ + +Q GN+V+Q IE E I++ + + H Y VI++
Sbjct: 376 IGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHKYSSNVIEKC 435
Query: 822 LEHCADKHQCQFI------VDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLS 875
LE A H+ + + + V + +DQY NYV Q + + +R ++I +
Sbjct: 436 LEQGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQRRELILTVR 495
Query: 876 GHIVQLSQHKFASNVIEKCLAY 897
HI L Q +++ K Y
Sbjct: 496 PHIPVLRQFPHGKHILAKLEKY 517
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 537 (194.1 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 124/359 (34%), Positives = 192/359 (53%)
Query: 617 SNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEF--------SADQ 668
+N Y G R ES P + + G +LS H +E+ DQ
Sbjct: 194 ANAYYGNGNYRLVESQPKP-----VGSRRHADGDSAQLSRFNNHPIEYYRNEIYGLCKDQ 248
Query: 669 HGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQ 728
HG R++Q+KLE + D+ +F E H +LMTD FGNY+ QK EY + QR L N+
Sbjct: 249 HGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSNDEQRTVLVNK 308
Query: 729 LVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRE-LDGQVMRCVRDQNGNHVIQKCIE 787
Q++ +++ +G R +QK +E I E++ Q V + L V+ V+D NGNHVIQKC+
Sbjct: 309 AAPQLVKIALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLN 368
Query: 788 CIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQ 847
+ EK FI A Q + H +GC V+QR ++H + + + ++++I +N AL Q
Sbjct: 369 RLTAEKSQFIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRAR-LIEQITENAFALVQ 427
Query: 848 DQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELII 907
D +GNYV Q++L + + R+ I +LS+HKF+SNVIEKCL R +I
Sbjct: 428 DPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQMI 487
Query: 908 EEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHI 966
EE+L +E L M++D +ANYVVQ + + + +A ++ I L+ +G+ I
Sbjct: 488 EEMLAGDE--LEKMLRDSYANYVVQTAMDYADPATRARIVKYIEPILPSLRGTPHGRRI 544
Score = 269 (99.8 bits), Expect = 7.2e-21, Sum P(3) = 7.2e-21
Identities = 68/266 (25%), Positives = 126/266 (47%)
Query: 717 GSPAQRKELANQLV----GQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRC 772
G AQ N + +I L +GCR +Q+ LE +Q + E V+
Sbjct: 221 GDSAQLSRFNNHPIEYYRNEIYGLCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHVIEL 280
Query: 773 VRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQ 832
+ D GN++ QK +E E+ +++ Q+ ++++ +G R +Q+++E + + Q Q
Sbjct: 281 MTDPFGNYLCQKLLEYSNDEQRTVLVNKAAPQLVKIALNQHGTRALQKMIEFISTEEQTQ 340
Query: 833 FIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSG-HIVQLSQHKFASNVI 891
++D + D+V L QD GN+V Q L R E+S+ I G V + H+ V+
Sbjct: 341 TVIDALKDHVVELVQDLNGNHVIQKCLNR-LTAEKSQFIYDAVGAQCVTVGTHRHGCCVL 399
Query: 892 EKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIR 951
++C+ + A+R +IE+I E +++D F NYVVQ I +L+ +
Sbjct: 400 QRCIDHASGAQRARLIEQIT----ENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFL 455
Query: 952 THAHVLKKYTYGKHIVARFEMLIGEE 977
+ L K+ + +++ + EE
Sbjct: 456 SRIPKLSKHKFSSNVIEKCLRTADEE 481
Score = 170 (64.9 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 45/183 (24%), Positives = 88/183 (48%)
Query: 641 LEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
L L + K + F + V +HG +Q+ +++ S ++A + ++I +A L
Sbjct: 367 LNRLTAEKSQ-FIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQITENAFAL 425
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
+ D FGNYV+Q + + L + + +I LS + VI+K L T + E + Q
Sbjct: 426 VQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQ 485
Query: 761 LVRE-LDG-QVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVI 818
++ E L G ++ + +RD N+V+Q ++ P I+ + +L P+G R+
Sbjct: 486 MIEEMLAGDELEKMLRDSYANYVVQTAMDYADPATRARIVKYIEPILPSLRGTPHGRRIG 545
Query: 819 QRV 821
++
Sbjct: 546 SKI 548
Score = 53 (23.7 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 16/67 (23%), Positives = 24/67 (35%)
Query: 371 GPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYS--NVQAPGFYSPQYGVGGYVMN 428
G + P +GF P + ++A P P N P + YG G Y +
Sbjct: 147 GAATSGNGTMPQPSLAGFPQPFFYGIQPFVAPPLPVNGQYNQSTPFAANAYYGNGNYRLV 206
Query: 429 SSIGPPL 435
S P+
Sbjct: 207 ESQPKPV 213
Score = 50 (22.7 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 210 PRSSSPVYNQSHSFGYSDSSSLRDPSV--------ISSNGVSTTTGAHNTGVSSKVDVST 261
P++S ++ H G +D S P+V + SN + +T G H + + +
Sbjct: 2 PQNSLSMFRLGHIGGSADESHSASPNVARHAARHSLESNALYSTEGNHESSTPTAMSRPA 61
Query: 262 AYNVSSSSHD 271
S S++D
Sbjct: 62 PLQSSYSTND 71
Score = 48 (22.0 bits), Expect = 8.3e-57, Sum P(3) = 8.3e-57
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 373 SRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFYSNVQAPGFYSPQ 419
S+P+T +QP + F P L A+ + P P + P FY Q
Sbjct: 130 SQPTT-LQP--NAPPFGPQLGAATSGNGTMPQPSLAGFPQPFFYGIQ 173
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 552 (199.4 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 113/316 (35%), Positives = 181/316 (57%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKF 713
+ + G I DQHG RF+Q+KLE + +FKE+ + +LMTD FGNY+ QK
Sbjct: 709 IDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQKL 768
Query: 714 FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLV-RELDGQVMRC 772
E+ + QR + ++ I+ +SM M+G R +QK +E + ++ QL+ R L V+
Sbjct: 769 LEHCNDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPL 828
Query: 773 VRDQNGNHVIQKCIECIPPEKIGFIISAFC--GQVAALSMHPYGCRVIQRVLEHCADKHQ 830
++D NGNHVIQKC+ + P+ FI A G A++ H +GC V+QR ++H ++ +
Sbjct: 829 IQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQK 888
Query: 831 CQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNV 890
Q ++ E++ N L QD YGNYV Q+VL +++ ++ GH+ L+ KF+SNV
Sbjct: 889 LQ-LIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFSSNV 947
Query: 891 IEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRI 950
+EKCL R +I+E++ + + LL +++D +ANYV+Q +S Q ++ I
Sbjct: 948 VEKCLHVADAITRGYLIQEVIDY--DNLLHLLQDPYANYVIQTSLTISEPHQHTKLVEAI 1005
Query: 951 RTHAHVLKKYTYGKHI 966
R H +LK YGK I
Sbjct: 1006 RPHLPLLKNTPYGKRI 1021
Score = 285 (105.4 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 63/246 (25%), Positives = 128/246 (52%)
Query: 727 NQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI 786
+Q++G I PL +GCR +QK LE +++ + +E+ ++ + D GN++ QK +
Sbjct: 710 DQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQKLL 769
Query: 787 E-CIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCAL 845
E C +++ II + +SM+ +G R +Q+++E+ Q Q I + D+V L
Sbjct: 770 EHCNDRQRLT-IIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPL 828
Query: 846 AQDQYGNYVTQHVLQRGKPLERSKIIRKLS--GHIVQLSQHKFASNVIEKCLAYGGPAER 903
QD GN+V Q L + P + I +S G + ++ H+ V+++C+ + +++
Sbjct: 829 IQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQK 888
Query: 904 ELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYG 963
+I+E++ ++ L +++D + NYVVQ + +L + M R H +L +
Sbjct: 889 LQLIQEVIANS----LVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFS 944
Query: 964 KHIVAR 969
++V +
Sbjct: 945 SNVVEK 950
Score = 267 (99.0 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 69/268 (25%), Positives = 132/268 (49%)
Query: 637 ICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPH 696
+C L E + + R + + IV S + HG+R +Q+ +E + E+ + K L
Sbjct: 764 LCQKLLEHCNDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKD 823
Query: 697 AS-KLMTDVFGNYVIQKFFEYGSPAQRKELANQLV--GQILPLSMQMYGCRVIQKALETI 753
+ L+ D+ GN+VIQK SP + + + + G + ++ +GC V+Q+ ++
Sbjct: 824 SVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHA 883
Query: 754 EIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGF-IISAFCGQVAALSMHP 812
QK QL++E+ + V+D GN+V+Q ++ +P + + + F G V L+
Sbjct: 884 SESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLD-LPFQGLATEMAKRFVGHVPILATQK 942
Query: 813 YGCRVIQRVLEHCADKHQCQFIVDEILD--NVCALAQDQYGNYVTQHVLQRGKPLERSKI 870
+ V+++ L H AD +++ E++D N+ L QD Y NYV Q L +P + +K+
Sbjct: 943 FSSNVVEKCL-HVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISEPHQHTKL 1001
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYG 898
+ + H+ L + + K + G
Sbjct: 1002 VEAIRPHLPLLKNTPYGKRIQNKIIKEG 1029
Score = 178 (67.7 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 39/173 (22%), Positives = 86/173 (49%)
Query: 659 GHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGS 718
G + + +HG +Q+ +++ S +K + +E++ ++ L+ D +GNYV+Q +
Sbjct: 861 GSCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPF 920
Query: 719 PAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRE-LD-GQVMRCVRDQ 776
E+A + VG + L+ Q + V++K L + + L++E +D ++ ++D
Sbjct: 921 QGLATEMAKRFVGHVPILATQKFSSNVVEKCLHVADAITRGYLIQEVIDYDNLLHLLQDP 980
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKH 829
N+VIQ + P + ++ A + L PYG R+ ++++ D +
Sbjct: 981 YANYVIQTSLTISEPHQHTKLVEAIRPHLPLLKNTPYGKRIQNKIIKEGRDTY 1033
Score = 137 (53.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 44/207 (21%), Positives = 88/207 (42%)
Query: 661 IVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHAS--KLMTDVFGNYVIQKFFEYGS 718
+V D +G+ IQ+ L S + ++ + S + T G V+Q+ ++ S
Sbjct: 825 VVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHAS 884
Query: 719 PAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNG 778
+Q+ +L +++ L L YG V+Q L+ ++ + G V +
Sbjct: 885 ESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFS 944
Query: 779 NHVIQKCIECIPPEKIGFIISAFCG--QVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
++V++KC+ G++I + L PY VIQ L ++ HQ +V+
Sbjct: 945 SNVVEKCLHVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLT-ISEPHQHTKLVE 1003
Query: 837 EILDNVCALAQDQYGNYVTQHVLQRGK 863
I ++ L YG + +++ G+
Sbjct: 1004 AIRPHLPLLKNTPYGKRIQNKIIKEGR 1030
Score = 84 (34.6 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 64/338 (18%), Positives = 120/338 (35%)
Query: 56 NRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGS 115
N+ PP G ++ I R + G NL + ++ N S N T +
Sbjct: 365 NKQPPQPPQSNG--VSGNGAIVRPIAKVGNNLLHSPIDL-NQFSNFNGNMNGTTSNNNNN 421
Query: 116 NVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFS 175
N N N + ++ N N S NSSN + V T + S + SP
Sbjct: 422 NNNNNNNNNNNNNNSNNNSNNNGNGNSNSNSSNNNNTVHPARTPTPPQSSGNSTSPSQHC 481
Query: 176 DEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPS 235
G+CS + + K E+ ++ SP+ + +++ ++SSS
Sbjct: 482 RYFTQ---GYCSKGSKCNFVHDSETSSE-KVEEKQQNVSPITSTNNN--NNNSSS----- 530
Query: 236 VISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSNDTDIWTK 295
S+N +T +N+ ++ V+ + + S+SS++ ++ ++N+ +
Sbjct: 531 --SNNNTNTNNNHNNSNNNNNNSVNNSNSNSNSSNNNNNNNNNNNNNNNNSNNNNSNNSN 588
Query: 296 DEVLXXXXXXXXXXXXXXNMKDFNTGHSNLGNQKNQAQLNVHXXXXXXXXXENAHSQVSS 355
+ + N ++N N N N + E S +
Sbjct: 589 SNNNNKQNNRNNNNNNNNSNNNNNNSNNNSTNSNNTQNNNNNTQSRKSLPVELQPSNIMQ 648
Query: 356 LGLIGTHIGMDQFHHGPSRPSTA-VQPVVQSSGFTPPL 392
L + H Q G + P Q + Q S +PP+
Sbjct: 649 LTKVQPHSKQQQGGRGRNNPMMQNQQQMAQLSITSPPI 686
Score = 70 (29.7 bits), Expect = 1.2e-52, Sum P(2) = 1.2e-52
Identities = 27/101 (26%), Positives = 49/101 (48%)
Query: 56 NRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTC-LKYYG 114
+ S S P + S ++ + + +S +N N N N N+ +++ Q Q+ + G
Sbjct: 324 SNSNSLPRSTSNS--SLNQIFEPQLRNSNINSNNNNNNSNNNNNKQPPQPPQSNGVSGNG 381
Query: 115 SNVNLNPRLPRHLDH---DLNRF----GNRRGLTSLDNSSN 148
+ V ++ +L H DLN+F GN G TS +N++N
Sbjct: 382 AIVRPIAKVGNNLLHSPIDLNQFSNFNGNMNGTTSNNNNNN 422
Score = 40 (19.1 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 55 PNRSGSAPPNM 65
P+RS SAPP++
Sbjct: 21 PDRSTSAPPSL 31
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 526 (190.2 bits), Expect = 5.6e-52, Sum P(2) = 5.6e-52
Identities = 114/319 (35%), Positives = 179/319 (56%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKF 713
LS +I+ F DQHG R++Q+ LE + +VF E P+ + LM D FGNY+ QK
Sbjct: 341 LSLQNSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKL 400
Query: 714 FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEI-EQKAQLVRELDGQVMRC 772
FE+ S AQR + +++P+S M+G R +QK ++ + +Q + +V L V+
Sbjct: 401 FEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLL 460
Query: 773 VRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQ 832
+D NGNHVIQKC+ E FI A C +S H +GC V+QR +H A Q +
Sbjct: 461 TKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDH-ASPAQIE 519
Query: 833 FIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIE 892
+V+ I+ + L QD +GNYV Q+VL+ P II + LS KF+SNV+E
Sbjct: 520 QLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVME 579
Query: 893 KCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT 952
KC+ + A +E +I E++ +E+ L +++D FANYV+Q + +S Q+A ++ RI+
Sbjct: 580 KCIFFAPAAIKEKLISELM--DEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKP 637
Query: 953 HAHVLKKYTYGKHIVARFE 971
+K G+ I+++ E
Sbjct: 638 LIPSIKNTPCGRRILSKLE 656
Score = 220 (82.5 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 71/287 (24%), Positives = 132/287 (45%)
Query: 637 ICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKAS-VFKEILP 695
+C L E S R + I +V S + HG+R +Q+ ++ S ++ S + + P
Sbjct: 396 LCQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRP 455
Query: 696 HASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEI 755
+ L D+ GN+VIQK S + + + + L +S +GC V+Q+ +
Sbjct: 456 NVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASP 515
Query: 756 EQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGC 815
Q QLV + + V+D GN+V+Q +E P IIS F +V ALS +
Sbjct: 516 AQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSS 575
Query: 816 RVIQRVLEHCADKHQCQFIVDEILD--NVCALAQDQYGNYVTQHVLQRGKPLERSKIIRK 873
V+++ + A + ++ E++D ++ L +D + NYV Q L +R++++ +
Sbjct: 576 NVMEKCI-FFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTALDNASVKQRAELVER 634
Query: 874 LSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLT 920
+ I + ++ K L P+ +E + I+ N E + T
Sbjct: 635 IKPLIPSIKNTPCGRRILSK-LERRHPSSKE---KPIVYSNSERVNT 677
Score = 45 (20.9 bits), Expect = 5.6e-52, Sum P(2) = 5.6e-52
Identities = 33/150 (22%), Positives = 57/150 (38%)
Query: 115 SNVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESED---DRSP 171
SN+ NP L + F G +S +NS+ S ++ S K + +
Sbjct: 201 SNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLLSNAT 260
Query: 172 KHFSDEMVDRKNGFCSGNEAVKVAGQN--RNLVDIKQEDFPRSSSPVYNQSHSF--GYSD 227
F + + + + +G N L+ P S++ V N S + G++
Sbjct: 261 SFFGENLTPSLAASTASTGSTDSSGSNIANTLIAPTPTISPPSANTVGNPSPADTPGFNV 320
Query: 228 SSSLRD-PSVISSNGVSTTT-GAHNTGVSS 255
S + D PSV SS S + N+ + S
Sbjct: 321 PSLISDDPSVSSSLSSSVASLSLQNSNILS 350
Score = 38 (18.4 bits), Expect = 3.0e-51, Sum P(2) = 3.0e-51
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 77 ARKSSSSGVNLANFNGNIRNSESEER 102
+R+S SS NL G I N+ S +
Sbjct: 193 SRRSISSSSNLGGNPGLIANNPSASK 218
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 539 (194.8 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 114/215 (53%), Positives = 147/215 (68%)
Query: 659 GHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGS 718
GHI+EFS DQHGSRFIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 719 PAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKA--QLVRELDGQVMRCVRDQ 776
Q+ LA ++ G +L L++QMYGCRVIQKALE I +Q+ ++VRELDG V++CV+DQ
Sbjct: 62 LEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQ 121
Query: 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVD 836
NGNHV+QKCIEC+ P+ + FII AF GQ YG VIQ VLEH + + + IV
Sbjct: 122 NGNHVVQKCIECVQPQSLQFIIDAFKGQ------DQYGNYVIQHVLEHGRPEDKSK-IVA 174
Query: 837 EILDNVCALAQDQYGNYVTQHVLQRGKPLERSKII 871
EI NV L+Q ++ + V + + ER+ +I
Sbjct: 175 EIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLI 209
Score = 357 (130.7 bits), Expect = 1.4e-31, P = 1.4e-31
Identities = 83/232 (35%), Positives = 125/232 (53%)
Query: 696 HASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEI 755
H + D G+ IQ E +PA+R+ + N+++ L + ++G VIQK E +
Sbjct: 3 HIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSL 62
Query: 756 EQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEK--IGFIISAFCGQVAALSMHPY 813
EQK L + G V+ G VIQK +E IP ++ I ++ G V
Sbjct: 63 EQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQN 122
Query: 814 GCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRK 873
G V+Q+ +E C QFI+D QDQYGNYV QHVL+ G+P ++SKI+ +
Sbjct: 123 GNHVVQKCIE-CVQPQSLQFIIDAFK------GQDQYGNYVIQHVLEHGRPEDKSKIVAE 175
Query: 874 LSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMM 922
+ G+++ LSQHKFASNV+EKC+ + ER ++I+E+ N+ L TMM
Sbjct: 176 IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMM 227
Score = 223 (83.6 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 64/223 (28%), Positives = 112/223 (50%)
Query: 731 GQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
G I+ S +G R IQ LE ++ + E+ + + D GN+VIQK E
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHC-ADKHQCQFIVDEILDNVCALAQDQ 849
E+ + G V +L++ YGCRVIQ+ LE +D+ +V E+ +V +DQ
Sbjct: 62 LEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQ 121
Query: 850 YGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEE 909
GN+V Q ++ +P II G Q ++ + VI+ L +G P ++ I+ E
Sbjct: 122 NGNHVVQKCIECVQPQSLQFIIDAFKG------QDQYGNYVIQHVLEHGRPEDKSKIVAE 175
Query: 910 ILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT 952
I G+ +L + + +FA+ VV+K +S +++A+++ + T
Sbjct: 176 IRGN----VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 214
Score = 185 (70.2 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 51/191 (26%), Positives = 91/191 (47%)
Query: 650 RRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYV 709
R+ ++I + D G+ IQ+ E S+++K ++ + I H L ++G V
Sbjct: 29 RQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRV 88
Query: 710 IQKFFEYGSPAQR--KELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDG 767
IQK E+ Q+ E+ +L G +L G V+QK +E ++ + ++ G
Sbjct: 89 IQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKG 148
Query: 768 QVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCAD 827
Q DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A
Sbjct: 149 Q------DQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-AS 201
Query: 828 KHQCQFIVDEI 838
+ + ++DE+
Sbjct: 202 RTERAVLIDEV 212
Score = 174 (66.3 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 49/206 (23%), Positives = 100/206 (48%)
Query: 767 GQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA 826
G +M +DQ+G+ IQ +E P + + + L + +G VIQ+ E
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEF-G 60
Query: 827 DKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLER---SKIIRKLSGHIVQLSQ 883
Q + + I +V +LA YG V Q L+ P ++ ++++R+L GH+++ +
Sbjct: 61 SLEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQQVINEMVRELDGHVLKCVK 119
Query: 884 HKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQ 943
+ ++V++KC+ P + II+ G +DQ+ NYV+Q + E +
Sbjct: 120 DQNGNHVVQKCIECVQPQSLQFIIDAFKG----------QDQYGNYVIQHVLEHGRPEDK 169
Query: 944 AMMLSRIRTHAHVLKKYTYGKHIVAR 969
+ +++ IR + VL ++ + ++V +
Sbjct: 170 SKIVAEIRGNVLVLSQHKFASNVVEK 195
Score = 155 (59.6 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 37/105 (35%), Positives = 53/105 (50%)
Query: 875 SGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKI 934
+GHI++ SQ + S I+ L PAER+L+ EIL + +M D F NYV+QK
Sbjct: 1 AGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYVIQKF 56
Query: 935 FELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
FE S Q+ + RIR H L YG ++ + I + Q
Sbjct: 57 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 101
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 486 (176.1 bits), Expect = 6.2e-47, Sum P(2) = 6.2e-47
Identities = 111/326 (34%), Positives = 187/326 (57%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKL-ENCSVDEKASVFKEILPHASKLMTDVFGNYVIQK 712
+ DI G++ + DQHG RF+Q+ E SVD +F E++ H +LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMI-IFNEVIAHVVELMMDPFGNYLMQK 389
Query: 713 FFEYGSPAQRKEL---ANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVR-ELDGQ 768
+ + QR ++ A + GQ++ +S+ YG RV+Q+ +ETI ++ LV+ L
Sbjct: 390 LLDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPG 449
Query: 769 VMRCVRDQNGNHVIQKCIECIPPEKIGFIISA---FCGQVAALSMHPYGCRVIQRVLEHC 825
+ ++D NGNHVIQ+C++C+ E FI A FC ++A H +GC V+Q+ + +
Sbjct: 450 FLDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIAT---HRHGCCVLQKCIAYS 506
Query: 826 ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHK 885
+ Q + ++ EI N LAQD +GNY Q V++ P + ++ +L GH VQLS K
Sbjct: 507 M-RQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQK 565
Query: 886 FASNVIEKCLAYGGPAERELIIEEILG--HNEETLLTMMKDQFANYVVQKIFELSSESQQ 943
F+S+++E+CL + P R I+ E++ H ++ +++D +AN+V+Q +
Sbjct: 566 FSSHMVERCLMHC-PESRPQIVRELVSVPHFDQ----LLQDPYANFVIQAALAATKGPLH 620
Query: 944 AMMLSRIRTHAHVLKKYTYGKHIVAR 969
A ++ IR H+ +L+ Y K I +R
Sbjct: 621 ASLVEVIRPHS-ILRNNPYCKRIFSR 645
Score = 217 (81.4 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 61/241 (25%), Positives = 114/241 (47%)
Query: 659 GHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEIL-PHASKLMTDVFGNYVIQKFFEYG 717
G ++ S + +G+R +Q+ +E ++ S+ K L P L+ D+ GN+VIQ+ +
Sbjct: 411 GQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCL 470
Query: 718 SPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQN 777
S K + + ++ +GC V+QK + +Q+ +L+ E+ + +D
Sbjct: 471 STEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPF 530
Query: 778 GNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDE 837
GN+ +Q IE P + +++ G LSM + +++R L HC + Q IV E
Sbjct: 531 GNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRP-Q-IVRE 588
Query: 838 ILD--NVCALAQDQYGNYVTQHVLQRGK-PLERSKIIRKLSGHIVQLSQHKFASNVIEKC 894
++ + L QD Y N+V Q L K PL S ++ + H + L + + + +
Sbjct: 589 LVSVPHFDQLLQDPYANFVIQAALAATKGPLHAS-LVEVIRPHSI-LRNNPYCKRIFSRN 646
Query: 895 L 895
L
Sbjct: 647 L 647
Score = 39 (18.8 bits), Expect = 6.2e-47, Sum P(2) = 6.2e-47
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 53 AVPNRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSE 98
+ P R+ PN+ ++ N + KSSS ++F+ + + E
Sbjct: 15 STPLRTPLHSPNLFNGDFSVSNRFSFKSSSDYSLSSSFSNGLCSPE 60
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 494 (179.0 bits), Expect = 8.5e-47, Sum P(2) = 8.5e-47
Identities = 104/314 (33%), Positives = 180/314 (57%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKAS-VFKEILPHASKLMTDVFGNYVIQK 712
L +ITG I + Q G RF+Q+KLE E + +F E+ H ++LM D +G Y+I +
Sbjct: 468 LEEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLIPQ 527
Query: 713 FFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRC 772
+Y QR+++ +++ + + +YG IQK L+ + +Q ++ + G+V++
Sbjct: 528 LMKYCDNNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKGKVIQL 587
Query: 773 VRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQ 832
+D GN++IQ ++ PE F+ A G + + H GC V+ R +++ A+ Q +
Sbjct: 588 SKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDN-ANPEQLE 646
Query: 833 FIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIE 892
+VD+I ++ L QDQ+GNYV QH+L + K SK+I L +I +LS KF+SNVIE
Sbjct: 647 KLVDKITEHSLKLVQDQFGNYVVQHLLSKNKAYS-SKLIVSLKDNIAELSIQKFSSNVIE 705
Query: 893 KCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT 952
KCL ELII+ + E +L++++D++AN+V+Q ++S+++Q A ++ I
Sbjct: 706 KCLQLADTPTYELIIKAL---TEADILSLLQDKYANFVIQTALDVSNDTQHAKLVKIIVP 762
Query: 953 HAHVLKKYTYGKHI 966
+ H +K Y HI
Sbjct: 763 YIHQIKT-PYVIHI 775
Score = 231 (86.4 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 60/233 (25%), Positives = 114/233 (48%)
Query: 650 RRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYV 709
RR + I + F+ +G IQ+ L+ S D+ S+ I +L D GNY+
Sbjct: 537 RRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKGKVIQLSKDNKGNYL 596
Query: 710 IQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQV 769
IQ F + SP + + + ++G I + GC V+ + ++ EQ +LV ++
Sbjct: 597 IQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKITEHS 656
Query: 770 MRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKH 829
++ V+DQ GN+V+Q + I+S +A LS+ + VI++ L+ AD
Sbjct: 657 LKLVQDQFGNYVVQHLLSKNKAYSSKLIVS-LKDNIAELSIQKFSSNVIEKCLQ-LADTP 714
Query: 830 QCQFIVDEILD-NVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQL 881
+ I+ + + ++ +L QD+Y N+V Q L + +K+++ + +I Q+
Sbjct: 715 TYELIIKALTEADILSLLQDKYANFVIQTALDVSNDTQHAKLVKIIVPYIHQI 767
Score = 183 (69.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 54/213 (25%), Positives = 104/213 (48%)
Query: 756 EQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPP-EKIGFIISAFCGQVAALSMHPYG 814
+ K + E+ GQ+ + Q G +QK +E P E + I + + L + PYG
Sbjct: 462 DPKCTSLEEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYG 521
Query: 815 CRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKL 874
+I +++++C D +Q + IVD+I +V A YG + Q +LQ P + II +
Sbjct: 522 QYLIPQLMKYC-DNNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASI 580
Query: 875 SGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKI 934
G ++QLS+ + +I+ L P + + + I+G+ EE + T + VV +
Sbjct: 581 KGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEE-ICT---HKVGCTVVNRC 636
Query: 935 FELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
+ ++ Q ++ +I H+ L + +G ++V
Sbjct: 637 IDNANPEQLEKLVDKITEHSLKLVQDQFGNYVV 669
Score = 68 (29.0 bits), Expect = 8.5e-47, Sum P(2) = 8.5e-47
Identities = 51/227 (22%), Positives = 90/227 (39%)
Query: 76 IARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDLNRFG 135
I SSSS + N +G ++ S A T N N + P LN G
Sbjct: 224 IGHPSSSSTPSSLNSSGGSISTSSSTSSPATST-------NTTPNTQAPFKSPRKLNTSG 276
Query: 136 NRRGLTSL-------DNSSNCSVHV--SQVTLSTHKEESEDDRSPKHFSDEMVDRKNGFC 186
+ GLTS+ ++S N S ++ T +T + + + G
Sbjct: 277 S--GLTSIIPPGFSNESSPNTSSNIVSPSTTTTTPLSSTSPSTTTTTTTPTSFQPSGGKM 334
Query: 187 SGNEAVKVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSS-SLRDPS--VISSNGVS 243
+ ++ V N +K + P +S N ++++ S+ S S P+ +SS+ S
Sbjct: 335 KKSPSMPVIAGKLNGESLKSPNKPNLASNNNNNNNNYSNSNISFSNIKPNNGSLSSSANS 394
Query: 244 TTTGAHN-TGVSSKVDV-STAYNVSSSSHDWTATISSTPPTEEVTSN 288
+TG N +G +V S+ N+ S + + S PT++ T +
Sbjct: 395 ISTGLPNLSGGKINTNVYSSLGNIGSGMNGSSTKDDSVSPTKKSTDH 441
Score = 47 (21.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 28/113 (24%), Positives = 45/113 (39%)
Query: 78 RKSSSSGVNLANFNGNIRNSESEERLQANQTCLK--YYGSNVNLNPRLPRH--LDHDLNR 133
+KS S V NG S ++ L +N Y SN++ + P + L N
Sbjct: 335 KKSPSMPVIAGKLNGESLKSPNKPNLASNNNNNNNNYSNSNISFSNIKPNNGSLSSSANS 394
Query: 134 FGNRRGLTSLDNSS-NCSVHVSQVTLST--HKEESEDDR-SPKHFSDEMVDRK 182
GL +L N +V+ S + + + ++DD SP S + RK
Sbjct: 395 IST--GLPNLSGGKINTNVYSSLGNIGSGMNGSSTKDDSVSPTKKSTDHQPRK 445
Score = 46 (21.3 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 212 SSSPVYNQSHSFGYSDSSSLRDPSVISSNG--VSTTTGAHNTGVSSKVDVST 261
S Q G+ SSS PS ++S+G +ST++ + S+ +T
Sbjct: 213 SQQQTQQQQQPIGHPSSSST--PSSLNSSGGSISTSSSTSSPATSTNTTPNT 262
Score = 37 (18.1 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 490 LQPSFANPLHLQYYQQPFGEAYNISGQFEPLGS 522
++PS +P L + +ISG PL S
Sbjct: 164 VEPSQMSPTPLNSFFSTHAANSSISGSLPPLRS 196
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 487 (176.5 bits), Expect = 1.4e-45, P = 1.4e-45
Identities = 109/324 (33%), Positives = 186/324 (57%)
Query: 653 ELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQK 712
++S+ G++ + DQHG RF+Q E+ S + +F E++PH +LM D FGNY++QK
Sbjct: 195 KVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQK 254
Query: 713 FFEYGSPAQRKELANQLV---GQILPLSMQMYGCRVIQKALETIEIEQKAQLVRE-LDGQ 768
+ + QR ++ + GQ++ +S+ YG RV+Q+ +E+I+ ++ LV+ L
Sbjct: 255 LLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPG 314
Query: 769 VMRCVRDQNGNHVIQKCIECIPPEKIGFII---SAFCGQVAALSMHPYGCRVIQRVLEHC 825
+ +RD NGNHVIQ+C++C+ E FI + FC +A H +GC V+Q+ + +
Sbjct: 315 FLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIAT---HRHGCCVLQKCIAYS 371
Query: 826 ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHK 885
+ Q + +V EI N LAQD YGNY Q VL+ + ++ +L GH V+LS K
Sbjct: 372 SGL-QREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQK 430
Query: 886 FASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAM 945
F+S+++E+CL + P R I+ E++ +L ++D +AN+V+Q ++ S A
Sbjct: 431 FSSHMVERCLTHC-PESRPQIVRELISVPHFDIL--IQDPYANFVIQAALAVTKGSLHAT 487
Query: 946 MLSRIRTHAHVLKKYTYGKHIVAR 969
++ IR H+ +L+ Y K I +R
Sbjct: 488 LVEVIRPHS-ILRNNPYCKRIFSR 510
Score = 252 (93.8 bits), Expect = 4.3e-18, P = 4.3e-18
Identities = 64/255 (25%), Positives = 121/255 (47%)
Query: 718 SPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQN 777
+P + ++ G + ++ +GCR +Q E + E+ V+ + D
Sbjct: 188 NPNESLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPF 247
Query: 778 GNHVIQKCIECIPPEK---IGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
GN+++QK ++ E+ I ++++ GQ+ +S++ YG RV+QR++E + Q +
Sbjct: 248 GNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLV 307
Query: 835 VDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKC 894
+ L +D GN+V Q LQ + I + + ++ H+ V++KC
Sbjct: 308 KSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKC 367
Query: 895 LAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHA 954
+AY +RE ++ EI N L + +D + NY VQ + EL S A ML++++ H
Sbjct: 368 IAYSSGLQREKLVTEI-SRNS---LFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHY 423
Query: 955 HVLKKYTYGKHIVAR 969
L + H+V R
Sbjct: 424 VELSMQKFSSHMVER 438
Score = 142 (55.0 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 45/195 (23%), Positives = 84/195 (43%)
Query: 631 SYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVF 690
+Y + +E +K+ K S + + D +G+ IQ+ L+ S ++ +F
Sbjct: 285 AYGTRVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIF 344
Query: 691 KEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL 750
++ + T G V+QK Y S QR++L ++ L L+ YG +Q L
Sbjct: 345 EDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVL 404
Query: 751 ETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIP---PEKIGFIISAFCGQVAA 807
E + A ++ +L G + + +H++++C+ P P+ + +IS
Sbjct: 405 ELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRPQIVRELISV--PHFDI 462
Query: 808 LSMHPYGCRVIQRVL 822
L PY VIQ L
Sbjct: 463 LIQDPYANFVIQAAL 477
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 458 (166.3 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 98/319 (30%), Positives = 175/319 (54%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKF 713
+++ G I + DQHG RF+Q+ ++ +F EI+ + S+LM D FGNY++QK
Sbjct: 275 IAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKL 334
Query: 714 FEYGSPAQRKELANQLV---GQILPLSMQMYGCRVIQKALETIEIEQKAQLV-RELDGQV 769
E + QR ++ + + G ++ +S M+G R +QK +ET + E++ ++ L +
Sbjct: 335 LEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGI 394
Query: 770 MRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKH 829
+ +++ NGNHV+Q+C++ + P F+ A L+ +GC V+Q+ L + ++
Sbjct: 395 VHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGY-SEGE 453
Query: 830 QCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
Q Q +V EI N L+QD +GNYV Q+V + +I+ +L G+ +LS K +SN
Sbjct: 454 QKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSN 513
Query: 890 VIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSR 949
V+EKCL R II E++ + L +M D + NYV+Q + S + A+++
Sbjct: 514 VVEKCLKLADDKHRARIIRELINYGR--LDQVMLDPYGNYVIQAALKQSKGNVHALLVDA 571
Query: 950 IRTHAHVLKKYTYGKHIVA 968
I+ + L+ YGK +++
Sbjct: 572 IKLNISSLRTNPYGKKVLS 590
Score = 214 (80.4 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 86/377 (22%), Positives = 173/377 (45%)
Query: 610 EMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSA--- 666
+ R + SNR W G+ G ES K+C + E++ R ++ T ++++ A
Sbjct: 190 DYRRAEQSNRNLFWNGEDGNESVR--KMC-YPEKILM----RSQMDLNTAKVIKYGAGDE 242
Query: 667 DQHGSRFIQQKLE--------NCSVD-EKASVFKEILPHASKLMTDVFGNYVIQKFFEYG 717
Q+G ++Q +L N S+ +K + E L D G +Q+ F
Sbjct: 243 SQNGRLWLQNQLNEDLTMSLNNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEK 302
Query: 718 SPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELD---GQVMRCVR 774
+ + N+++ I L M +G ++QK LE +Q+ Q+V + G +++
Sbjct: 303 DGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISC 362
Query: 775 DQNGNHVIQKCIECIP-PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQC-Q 832
D +G +QK +E E+I IISA + L + G V+QR L++ C +
Sbjct: 363 DMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLP--YCGK 420
Query: 833 FIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIE 892
F+ + + + LA D++G V Q L + ++ ++ +++ + + LSQ F + V++
Sbjct: 421 FLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQ 480
Query: 893 KCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT 952
I+E++ G+ E L+M K ++ VV+K +L+ + +A ++ +
Sbjct: 481 YVFELQLQWATFEILEQLEGNYTE--LSMQK--CSSNVVEKCLKLADDKHRARIIRELIN 536
Query: 953 HAHV--LKKYTYGKHIV 967
+ + + YG +++
Sbjct: 537 YGRLDQVMLDPYGNYVI 553
Score = 211 (79.3 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 55/252 (21%), Positives = 117/252 (46%)
Query: 731 GQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIE-CI 789
G+I L+ +GCR +Q+ + + E+ + + D GN+++QK +E C
Sbjct: 280 GKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCN 339
Query: 790 PPEKIGFI--ISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQ 847
+++ + I+ G + +S +G R +Q+++E + + I+ + + L +
Sbjct: 340 EDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIK 399
Query: 848 DQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELII 907
+ GN+V Q LQ P + H V+L+ + V++KCL Y +++ ++
Sbjct: 400 NVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLV 459
Query: 908 EEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
EI + L + +D F NYV+Q +FEL + +L ++ + L ++V
Sbjct: 460 SEIASN----ALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVV 515
Query: 968 ARFEMLIGEENQ 979
+ L ++++
Sbjct: 516 EKCLKLADDKHR 527
Score = 204 (76.9 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 54/169 (31%), Positives = 89/169 (52%)
Query: 652 FELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQ 711
FE + IT H VE + D+HG +Q+ L ++K + EI +A L D FGNYV+Q
Sbjct: 423 FEAA-IT-HCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQ 480
Query: 712 KFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELD--GQV 769
FE E+ QL G LSMQ V++K L+ + + +A+++REL G++
Sbjct: 481 YVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRL 540
Query: 770 MRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVI 818
+ + D GN+VIQ ++ ++ A +++L +PYG +V+
Sbjct: 541 DQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVL 589
Score = 188 (71.2 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 78/320 (24%), Positives = 140/320 (43%)
Query: 609 NEMRFSPVSNRYSGWQGQRGFESY--NDPKICNFLEELKSGK-GRRFEL--SDITGHIVE 663
N + P +Y+ RG Y D C FL+ + S K G E+ ++I +I E
Sbjct: 263 NNLSLQP--QKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISE 320
Query: 664 FSADQHGSRFIQQKLENCSVDEKASVFKEILPHAS---KLMTDVFGNYVIQKFFEYGSPA 720
D G+ +Q+ LE C+ D++ + I K+ D+ G +QK E A
Sbjct: 321 LMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVE---TA 377
Query: 721 QRKE----LANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR-- 774
+R+E + + L I+ L + G V+Q+ L+ + + + + E + CV
Sbjct: 378 KREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYL-LPYCGKFLFE--AAITHCVELA 434
Query: 775 -DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQF 833
D++G V+QKC+ E+ ++S LS P+G V+Q V E F
Sbjct: 435 TDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFE--LQLQWATF 492
Query: 834 -IVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLS--GHIVQLSQHKFASNV 890
I++++ N L+ + + V + L+ R++IIR+L G + Q+ + + V
Sbjct: 493 EILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYV 552
Query: 891 IEKCLAYGGPAERELIIEEI 910
I+ L L+++ I
Sbjct: 553 IQAALKQSKGNVHALLVDAI 572
Score = 173 (66.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 58/230 (25%), Positives = 110/230 (47%)
Query: 749 ALETIEIE-QKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAA 807
+L + ++ QK + E G++ +DQ+G +Q+ I I + ++
Sbjct: 261 SLNNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISE 320
Query: 808 LSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDN---VCALAQDQYGNYVTQHVLQRGKP 864
L M P+G ++Q++LE C + + Q IV I + ++ D +G Q +++ K
Sbjct: 321 LMMDPFGNYLVQKLLEVCNEDQRMQ-IVHSITRKPGLLIKISCDMHGTRAVQKIVETAKR 379
Query: 865 LER-SKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMK 923
E S II L IV L ++ ++V+++CL Y P + + E + H E L T
Sbjct: 380 EEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVE-LAT--- 435
Query: 924 DQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR-FEM 972
D+ V+QK S Q+ ++S I ++A +L + +G +++ FE+
Sbjct: 436 DRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFEL 485
Score = 41 (19.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 38 GLLQK-GCDVHGS--VQRAV 54
GLL K CD+HG+ VQ+ V
Sbjct: 355 GLLIKISCDMHGTRAVQKIV 374
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 451 (163.8 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 111/318 (34%), Positives = 179/318 (56%)
Query: 659 GHIVEFSADQHGSRFIQQKL-ENCSVDEKASVF-KEILPHASKLMTDVFGNYVIQKFFEY 716
GH+ DQ+G R++Q+ L EN V+ AS+F EI +LM D FGNY+ QK F Y
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVN--ASLFFPEIRQSVVQLMIDPFGNYMCQKLFVY 522
Query: 717 GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEI-EQKAQLVRELDGQVMRCVRD 775
S Q+ + N + I+ + +YG R +Q ++ + EQ + L++ + + D
Sbjct: 523 ASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACD 582
Query: 776 QNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIV 835
NG HV+QKCI PPEK+ + + + L+ + +GC ++QR L+ Q + +V
Sbjct: 583 NNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQ-ERLV 641
Query: 836 DEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCL 895
+ I+ + L Q+ YGNY+ QHVL+ +II K G+I +LS KF+SN IE+C+
Sbjct: 642 NSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCI 701
Query: 896 AYGGPAERELIIEEILGH-NEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHA 954
P+ RE +++E L N E LL D +ANYV+Q+ ++ ESQ+ ++L R+ +
Sbjct: 702 RTASPSTREQMLQEFLSFPNIEQLLD---DCYANYVMQRFLNVADESQKFLIL---RSIS 755
Query: 955 HVLKKYT---YGKHIVAR 969
HV+ K +G+HI+A+
Sbjct: 756 HVIPKIQNTRHGRHILAK 773
Score = 198 (74.8 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 57/259 (22%), Positives = 121/259 (46%)
Query: 637 ICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVF-KEILP 695
+C L S + + L+ I IV+ ++ +G+R +Q ++ + +E+ S+ K I+P
Sbjct: 515 MCQKLFVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIP 574
Query: 696 HASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEI 755
+ L D G +V+QK P + + L + ++ L+ +GC ++Q+ L+
Sbjct: 575 SLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNG 634
Query: 756 EQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGC 815
+ + +LV + + V++ GN+++Q +E II F G + LS+ +
Sbjct: 635 DIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSS 694
Query: 816 RVIQRVLEHCADKHQCQFIVDEI-LDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKL 874
I++ + + + Q + + + N+ L D Y NYV Q L ++ I+R +
Sbjct: 695 NAIEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSI 754
Query: 875 SGHIVQLSQHKFASNVIEK 893
S I ++ + +++ K
Sbjct: 755 SHVIPKIQNTRHGRHILAK 773
Score = 171 (65.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 41/209 (19%), Positives = 99/209 (47%)
Query: 730 VGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECI 789
+G + + YGCR +QK L+ + E+ V++ + D GN++ QK
Sbjct: 464 LGHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYA 523
Query: 790 PPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQ 849
E+ +++ + + + YG R +Q +++ Q ++ I+ ++ LA D
Sbjct: 524 SREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDN 583
Query: 850 YGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEE 909
G +V Q + + P + + + +++ L+ ++ ++++CL +E ++
Sbjct: 584 NGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNS 643
Query: 910 ILGHNEETLLTMMKDQFANYVVQKIFELS 938
I+ ++ L ++++ + NY+VQ + EL+
Sbjct: 644 II----KSCLLLVQNAYGNYLVQHVLELN 668
Score = 53 (23.7 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 36/181 (19%), Positives = 78/181 (43%)
Query: 86 NLANFNGNIRNSESE-ERLQANQTCLKYYGSNVNLNPRLPRHL-DH-DLNRFGNRRGLTS 142
N + + N +N ++ ++Q++ + L+ N + H DH D +R + +S
Sbjct: 259 NNVSLSTNSKNYSTDFTKIQSDSSLLQNRQQNHRIETDQLSHFPDHLDPSRIPSPYQPSS 318
Query: 143 LDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNGFCS---GNEAVKVAGQNR 199
L + +H S+V + + K + +P S+ ++ N S N+ V+ +NR
Sbjct: 319 LQPLESRKLH-SKVDVHSKKLNALSQLNPILRSENVLQNDNHHSSLSMDNDPTNVSTKNR 377
Query: 200 NLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDV 259
N + + + N+ G + ++ + + V++ G+H+T SKV +
Sbjct: 378 NNQTVGEHPYVDD-----NKKKKKG---PAKPKEKATLGKT-VNSFFGSHSTSNYSKVPL 428
Query: 260 S 260
S
Sbjct: 429 S 429
Score = 44 (20.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 20/85 (23%), Positives = 33/85 (38%)
Query: 477 QYLNKIYGQFGFSLQPSFANPLHLQYYQQ--PFGEAYNISGQFEPLG-SKGGVLGSHTNS 533
Q L K G FS SF + + ++ P N S P S+ + SH +S
Sbjct: 86 QRLFKAKGNASFSKTKSFPSSVTYSPSEETFPLTSGMNKSVHEYPFTLSESAISSSHKSS 145
Query: 534 HELKKGSDMAASDVQTFQHYRSGET 558
++ D + S H+ + +T
Sbjct: 146 IPERRNFDSSVSVSNPLLHWNNVDT 170
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 434 (157.8 bits), Expect = 7.3e-40, P = 7.3e-40
Identities = 96/330 (29%), Positives = 179/330 (54%)
Query: 642 EELKSGKGR-RFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
EE + +G+ ++S + I ++G +I +KL+ + +EK + +L L
Sbjct: 179 EEKHNEEGQVHIDMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSL 238
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
D++G+YV Q F+ ++ ++ + L++ YGCR+IQK+LE++ E K +
Sbjct: 239 CPDIYGSYVAQSIFDLKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCK 298
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
+ +EL +++ + QNGNHVIQKC+E +P I II+ + LS H YGCR++QR
Sbjct: 299 IFKELQEDLIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQR 358
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+ E ++ Q + ++I+ + L +++YGNYV Q + R I ++ I +
Sbjct: 359 IYE-IGNEQQINRLNEQIIKKI-HLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYK 416
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEI---LGHNEETLLTMMKDQFANYVVQKIFEL 937
LS HK+A N+IEK L ++ II++I + ++ ++ + KD + N+++QK+
Sbjct: 417 LSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTT 476
Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
+ ++ ++ I + LK TYGK+I+
Sbjct: 477 CRKKERNFIIKTIIENLDKLKDETYGKYIL 506
Score = 198 (74.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 56/229 (24%), Positives = 110/229 (48%)
Query: 742 GCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGF-IISA 800
GC I K L+ E+K ++ L M D G++V Q + + EK
Sbjct: 208 GCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFD-LKDEKYKERFTDE 266
Query: 801 FCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQ 860
F + L++H YGCR+IQ+ LE +D+++C+ I E+ +++ Q GN+V Q ++
Sbjct: 267 FLKHTSFLTLHTYGCRLIQKSLESLSDEYKCK-IFKELQEDLIKYICHQNGNHVIQKCVE 325
Query: 861 RGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLT 920
II + ++ LS H + ++++ G + + E+I+ +
Sbjct: 326 VLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKK-----IH 380
Query: 921 MMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
++K+++ NYV+QK FE S ++ + ++ I + L + Y +I+ +
Sbjct: 381 LIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEK 429
Score = 144 (55.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 57/243 (23%), Positives = 113/243 (46%)
Query: 626 QRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLE--NCS- 682
Q+ ES +D C +EL+ ++++ Q+G+ IQ+ +E CS
Sbjct: 285 QKSLESLSDEYKCKIFKELQED-------------LIKYICHQNGNHVIQKCVEVLPCSY 331
Query: 683 VDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYG 742
+D ++ +E LP S + +G ++Q+ +E G+ Q L Q++ +I L YG
Sbjct: 332 IDIIINIIEEYLPFLS---SHAYGCRIVQRIYEIGNEQQINRLNEQIIKKI-HLIKNRYG 387
Query: 743 CRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI---ECIPPEKI-GFII 798
VIQK E + + + E+ + + + ++I+K + E +KI I+
Sbjct: 388 NYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIV 447
Query: 799 SAFC-GQ--VAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVT 855
+ G+ + + YG ++Q++L C K + FI+ I++N+ L + YG Y+
Sbjct: 448 NDISDGKDNIINICKDCYGNFMMQKLLTTCRKKER-NFIIKTIIENLDKLKDETYGKYIL 506
Query: 856 QHV 858
+ +
Sbjct: 507 RAI 509
Score = 139 (54.0 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 45/173 (26%), Positives = 80/173 (46%)
Query: 808 LSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLER 867
L H GC I + L+ +K + + I++ +L + +L D YG+YV Q + +
Sbjct: 202 LCFHKNGCEYIIKKLKE-DNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKYK 260
Query: 868 SKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFA 927
+ + H L+ H + +I+K L + I +E+ +E L+ + Q
Sbjct: 261 ERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKEL----QEDLIKYICHQNG 316
Query: 928 NYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR-FEMLIGEENQ 979
N+V+QK E+ S ++++ I + L + YG IV R +E IG E Q
Sbjct: 317 NHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYE--IGNEQQ 367
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 434 (157.8 bits), Expect = 7.3e-40, P = 7.3e-40
Identities = 96/330 (29%), Positives = 179/330 (54%)
Query: 642 EELKSGKGR-RFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKL 700
EE + +G+ ++S + I ++G +I +KL+ + +EK + +L L
Sbjct: 179 EEKHNEEGQVHIDMSKVMYDIYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSL 238
Query: 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQ 760
D++G+YV Q F+ ++ ++ + L++ YGCR+IQK+LE++ E K +
Sbjct: 239 CPDIYGSYVAQSIFDLKDEKYKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCK 298
Query: 761 LVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQR 820
+ +EL +++ + QNGNHVIQKC+E +P I II+ + LS H YGCR++QR
Sbjct: 299 IFKELQEDLIKYICHQNGNHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQR 358
Query: 821 VLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ 880
+ E ++ Q + ++I+ + L +++YGNYV Q + R I ++ I +
Sbjct: 359 IYE-IGNEQQINRLNEQIIKKI-HLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYK 416
Query: 881 LSQHKFASNVIEKCLAYGGPAERELIIEEI---LGHNEETLLTMMKDQFANYVVQKIFEL 937
LS HK+A N+IEK L ++ II++I + ++ ++ + KD + N+++QK+
Sbjct: 417 LSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTT 476
Query: 938 SSESQQAMMLSRIRTHAHVLKKYTYGKHIV 967
+ ++ ++ I + LK TYGK+I+
Sbjct: 477 CRKKERNFIIKTIIENLDKLKDETYGKYIL 506
Score = 198 (74.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 56/229 (24%), Positives = 110/229 (48%)
Query: 742 GCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGF-IISA 800
GC I K L+ E+K ++ L M D G++V Q + + EK
Sbjct: 208 GCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFD-LKDEKYKERFTDE 266
Query: 801 FCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQ 860
F + L++H YGCR+IQ+ LE +D+++C+ I E+ +++ Q GN+V Q ++
Sbjct: 267 FLKHTSFLTLHTYGCRLIQKSLESLSDEYKCK-IFKELQEDLIKYICHQNGNHVIQKCVE 325
Query: 861 RGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLT 920
II + ++ LS H + ++++ G + + E+I+ +
Sbjct: 326 VLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKK-----IH 380
Query: 921 MMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
++K+++ NYV+QK FE S ++ + ++ I + L + Y +I+ +
Sbjct: 381 LIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEK 429
Score = 144 (55.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 57/243 (23%), Positives = 113/243 (46%)
Query: 626 QRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLE--NCS- 682
Q+ ES +D C +EL+ ++++ Q+G+ IQ+ +E CS
Sbjct: 285 QKSLESLSDEYKCKIFKELQED-------------LIKYICHQNGNHVIQKCVEVLPCSY 331
Query: 683 VDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYG 742
+D ++ +E LP S + +G ++Q+ +E G+ Q L Q++ +I L YG
Sbjct: 332 IDIIINIIEEYLPFLS---SHAYGCRIVQRIYEIGNEQQINRLNEQIIKKI-HLIKNRYG 387
Query: 743 CRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI---ECIPPEKI-GFII 798
VIQK E + + + E+ + + + ++I+K + E +KI I+
Sbjct: 388 NYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIV 447
Query: 799 SAFC-GQ--VAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVT 855
+ G+ + + YG ++Q++L C K + FI+ I++N+ L + YG Y+
Sbjct: 448 NDISDGKDNIINICKDCYGNFMMQKLLTTCRKKER-NFIIKTIIENLDKLKDETYGKYIL 506
Query: 856 QHV 858
+ +
Sbjct: 507 RAI 509
Score = 139 (54.0 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 45/173 (26%), Positives = 80/173 (46%)
Query: 808 LSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLER 867
L H GC I + L+ +K + + I++ +L + +L D YG+YV Q + +
Sbjct: 202 LCFHKNGCEYIIKKLKE-DNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKYK 260
Query: 868 SKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFA 927
+ + H L+ H + +I+K L + I +E+ +E L+ + Q
Sbjct: 261 ERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKEL----QEDLIKYICHQNG 316
Query: 928 NYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR-FEMLIGEENQ 979
N+V+QK E+ S ++++ I + L + YG IV R +E IG E Q
Sbjct: 317 NHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYE--IGNEQQ 367
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 448 (162.8 bits), Expect = 9.0e-39, Sum P(2) = 9.0e-39
Identities = 109/329 (33%), Positives = 174/329 (52%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKF 713
L G I DQHG RF+Q++L+ ++F+E + +LMTD FGNY+IQK
Sbjct: 561 LDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKL 620
Query: 714 FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRE-LDGQVMRC 772
E + QR L + +S+ +G R +QK +E I+ +++AQ+V + L ++
Sbjct: 621 LEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQL 680
Query: 773 VRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQ 832
+D NGNHVIQKC++ + PE FI A ++ H +GC V+QR L+H QC
Sbjct: 681 SKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDH-GTTEQCD 739
Query: 833 FIVDEILDNVCALAQDQYGNYVTQHVL----QRGKPLERSKIIRKLSGHIVQLSQHKFAS 888
+ D++L V L D +GNYV Q+++ ++ K KI+ L ++LS HKF S
Sbjct: 740 NLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGS 799
Query: 889 NVIEKCLAYGGPAERELIIEEILGHNEET-LLTMMKDQFANYVVQKIFELSSESQQAMM- 946
NVIEK L +E ++ EIL + ET + +++ D + NYV+Q ++S + +
Sbjct: 800 NVIEKILKTAIVSEPMIL--EILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYK 857
Query: 947 -LSRIRTHAHV--LKKYTYGKHIVARFEM 972
LS I V ++ +GK I+ +
Sbjct: 858 RLSEIVAPLLVGPIRNTPHGKRIIGMLHL 886
Score = 160 (61.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 68/299 (22%), Positives = 126/299 (42%)
Query: 675 QQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEY-GSPAQRKELANQLVGQI 733
Q+K+E S A V + + L D G +QK + GS A + +
Sbjct: 547 QRKIEESSRFADA-VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAA-DAIFEETKDYT 604
Query: 734 LPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPP-E 792
+ L +G +IQK LE + EQ+ L + + + +G +QK IECI E
Sbjct: 605 VELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDE 664
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
+ ++ + LS G VIQ+ L+ ++ QFI D I D+ +A ++G
Sbjct: 665 EAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPEN-FQFIFDAISDSCIDIATHRHGC 723
Query: 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILG 912
V Q L G + + KL + +L+ F + V++ + + +I+
Sbjct: 724 CVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVH 783
Query: 913 HNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIR----THAHVLKKYTYGKHIV 967
+ + + +F + V++KI + + S+ M+L + T L +YG +++
Sbjct: 784 LLKPRAIELSIHKFGSNVIEKILKTAIVSEP-MILEILNNGGETGIQSLLNDSYGNYVL 841
Score = 47 (21.6 bits), Expect = 9.0e-39, Sum P(2) = 9.0e-39
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 504 QQPFGEAYNISGQFEPLGSKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRSGETENPST 563
+ PF +Y + QF+P +L + SH L S + + Q+ H NPS+
Sbjct: 336 RSPFPNSYEMGAQFQPFSP---IL--NPTSHSLNANSPIPLT--QSPIHL--APVLNPSS 386
Query: 564 SKVTVS 569
+ V S
Sbjct: 387 NSVAFS 392
Score = 43 (20.2 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 314 NMKDFNTGHSNLGNQKN 330
N KD TG SN+G KN
Sbjct: 497 NNKD--TGRSNVGKMKN 511
Score = 41 (19.5 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 64 NMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEER 102
NM+ S+ N ++++ N N N N NS S E+
Sbjct: 511 NMKNSYHGYYN---NNNNNNNNNNNNNNSNATNSNSAEK 546
Score = 39 (18.8 bits), Expect = 6.2e-38, Sum P(2) = 6.2e-38
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 560 NPSTSKVTVSPYHMGNPP 577
N T+ ++ SP + G PP
Sbjct: 98 NDPTAPLSSSPLNAGGPP 115
Score = 39 (18.8 bits), Expect = 6.2e-38, Sum P(2) = 6.2e-38
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 144 DNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNG 184
+N++N + + S T S E+ F+D ++D+ G
Sbjct: 526 NNNNNNNNNNSNATNSNSAEKQRKIEESSRFADAVLDQYIG 566
Score = 38 (18.4 bits), Expect = 7.9e-38, Sum P(2) = 7.9e-38
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 545 SDVQTFQHYRSGETENPSTSKVTVSPYHMGNPPNMGMFV 583
SD+Q F + +T+K N P+ F+
Sbjct: 229 SDMQNFSKAKKPSVGANNTAKTRTQSISFDNTPSSTSFI 267
Score = 38 (18.4 bits), Expect = 7.9e-38, Sum P(2) = 7.9e-38
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 360 GTHIGMDQFHH--GPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNP 405
G ++ MD + GPS + P Q++ P LY++ + A P
Sbjct: 409 GPNVRMDLINPNLGPSMQPFHILPPQQNTPPPPWLYSTPPPFNAMVPP 456
Score = 37 (18.1 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 20/77 (25%), Positives = 24/77 (31%)
Query: 430 SIGPPLVAGYPPH--GGIAMVLDGSAGPSFHPQPXXXXXXXXXXXXX-DMQYLNKIYGQF 486
S PP A PPH M L SA H + + Y NK G+
Sbjct: 445 STPPPFNAMVPPHLLAQNHMPLMNSANNKHHGRNNNSMSSHNDNDNIGNSNYNNKDTGRS 504
Query: 487 GFSLQPSFANPLHLQYY 503
+ N H YY
Sbjct: 505 NVGKMKNMKNSYH-GYY 520
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 417 (151.9 bits), Expect = 5.0e-38, P = 5.0e-38
Identities = 93/223 (41%), Positives = 133/223 (59%)
Query: 703 DVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLV 762
D G+ IQ E +PA+R+ + N+++ L + ++G VIQK E +EQK L
Sbjct: 6 DQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALA 65
Query: 763 RELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVL 822
+ G V+ G VIQK +E IP ++ QV ALS HPYGCRVIQR+L
Sbjct: 66 ERIRGHVLSLALQMYGCRVIQKALEFIPSDQ----------QVFALSTHPYGCRVIQRIL 115
Query: 823 EHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLS 882
EHC Q I++E+ + L QDQYGNYV QHVL+ G+P ++SKI+ ++ G+++ LS
Sbjct: 116 EHCLPD-QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 174
Query: 883 QHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMM 922
QHKFASNV+EKC+ + ER ++I+E+ N+ L TMM
Sbjct: 175 QHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMM 217
Score = 365 (133.5 bits), Expect = 1.9e-32, P = 1.9e-32
Identities = 92/210 (43%), Positives = 120/210 (57%)
Query: 663 EFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQR 722
EFS DQHGSRFIQ KLE + E+ VF EIL A +LM DVFGNYVIQKFFE+GS Q+
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQK 61
Query: 723 KELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVI 782
LA ++ G +L L++QMYGCRVIQKALE I +Q QV G VI
Sbjct: 62 LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ----------QVFALSTHPYGCRVI 111
Query: 783 QKCIE-CIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDN 841
Q+ +E C+P + + I+ L YG VIQ VLEH + + + IV EI N
Sbjct: 112 QRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK-IVAEIRGN 169
Query: 842 VCALAQDQYGNYVTQHVLQRGKPLERSKII 871
V L+Q ++ + V + + ER+ +I
Sbjct: 170 VLVLSQHKFASNVVEKCVTHASRTERAVLI 199
Score = 215 (80.7 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 64/216 (29%), Positives = 108/216 (50%)
Query: 737 SMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGF 796
S +G R IQ LE ++ + E+ + + D GN+VIQK E E+
Sbjct: 4 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 797 IISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQ 856
+ G V +L++ YGCRVIQ+ LE FI + V AL+ YG V Q
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALE---------FIPSD--QQVFALSTHPYGCRVIQ 112
Query: 857 HVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEE 916
+L+ P + I+ +L H QL Q ++ + VI+ L +G P ++ I+ EI G+
Sbjct: 113 RILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN--- 169
Query: 917 TLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT 952
+L + + +FA+ VV+K +S +++A+++ + T
Sbjct: 170 -VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCT 204
Score = 207 (77.9 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 56/189 (29%), Positives = 94/189 (49%)
Query: 650 RRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYV 709
R+ ++I + D G+ IQ+ E S+++K ++ + I H L ++G V
Sbjct: 25 RQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRV 84
Query: 710 IQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQV 769
IQK E+ P+ + Q+ LS YGCRVIQ+ LE +Q ++ EL
Sbjct: 85 IQKALEF-IPSDQ---------QVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHT 134
Query: 770 MRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKH 829
+ V+DQ GN+VIQ +E PE I++ G V LS H + V+++ + H A +
Sbjct: 135 EQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTH-ASRT 193
Query: 830 QCQFIVDEI 838
+ ++DE+
Sbjct: 194 ERAVLIDEV 202
Score = 153 (58.9 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 48/196 (24%), Positives = 92/196 (46%)
Query: 774 RDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQF 833
+DQ+G+ IQ +E P + + + L + +G VIQ+ E Q
Sbjct: 5 QDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEF-GSLEQKLA 63
Query: 834 IVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEK 893
+ + I +V +LA YG V Q L+ P ++ + LS H + VI++
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQQ---------VFALSTHPYGCRVIQR 113
Query: 894 CLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTH 953
L + P + I+EE+ H E+ +++DQ+ NYV+Q + E ++ +++ IR +
Sbjct: 114 ILEHCLPDQTLPILEELHQHTEQ----LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 169
Query: 954 AHVLKKYTYGKHIVAR 969
VL ++ + ++V +
Sbjct: 170 VLVLSQHKFASNVVEK 185
Score = 135 (52.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 880 QLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
+ SQ + S I+ L PAER+L+ EIL + +M D F NYV+QK FE S
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEIL----QAAYQLMVDVFGNYVIQKFFEFGS 57
Query: 940 ESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQ 979
Q+ + RIR H L YG ++ + I + Q
Sbjct: 58 LEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 97
Score = 115 (45.5 bits), Expect = 0.00067, P = 0.00067
Identities = 32/110 (29%), Positives = 51/110 (46%)
Query: 846 AQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAEREL 905
+QDQ+G+ Q L+R P ER + ++ QL F + VI+K +G ++
Sbjct: 4 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 906 IIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAH 955
+ E I GH +L++ + V+QK E QQ LS TH +
Sbjct: 64 LAERIRGH----VLSLALQMYGCRVIQKALEFIPSDQQVFALS---THPY 106
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 417 (151.9 bits), Expect = 5.0e-38, P = 5.0e-38
Identities = 104/321 (32%), Positives = 179/321 (55%)
Query: 656 DITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFE 715
D G + + DQ G R +Q+ ++ + + +FKE++ + +L TD FGNY+IQK E
Sbjct: 241 DSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIE 300
Query: 716 YGSPAQRKELANQLV---GQILPLSMQMYGCRVIQKALETIEIEQKAQLVRE-LDGQVMR 771
+ QR ++ +L G ++ +S+ YG RV+QK +ET+ +++ LV+ L +
Sbjct: 301 VCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLS 360
Query: 772 CVRDQNGNHVIQKCIECIPPEKIGFIISA---FCGQVAALSMHPYGCRVIQRVLEHCADK 828
R+ NGNHVI C++ P FI+ A FC ++A + H GC V+QR + + +
Sbjct: 361 LFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIAT-TRH--GCCVLQRCVSYSVGE 417
Query: 829 HQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFAS 888
Q + +VDEI N LAQD +GNY+ Q++++ K + ++ +L G+ V+L+ KF S
Sbjct: 418 -QHEKLVDEISRNSLLLAQDPFGNYLVQYIIE--KKVGGVNVLFELRGNYVKLATQKFGS 474
Query: 889 NVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLS 948
+V+EKCL Y P R I+ E++ L ++D +ANYV+Q + +A ++
Sbjct: 475 HVVEKCLRYY-PESRSQIVNELVSVLNFGYL--LQDPYANYVIQCALSKTKGFVRASLVE 531
Query: 949 RIRTHAHVLKKYTYGKHIVAR 969
++R + + LK Y K I ++
Sbjct: 532 KVRRYEN-LKMTPYCKRIFSK 551
Score = 215 (80.7 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 69/265 (26%), Positives = 126/265 (47%)
Query: 636 KICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEIL- 694
++CN EE ++ R L+ G +V+ S + +G+R +Q+ +E + E+ S+ K L
Sbjct: 300 EVCN--EEQRTQILIR--LTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALV 355
Query: 695 PHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIE 754
P L ++ GN+VI ++ SP K + + ++ +GC V+Q+ +
Sbjct: 356 PGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSV 415
Query: 755 IEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAF--CGQVAALSMHP 812
EQ +LV E+ + +D GN+++Q IE +K+G + F G L+
Sbjct: 416 GEQHEKLVDEISRNSLLLAQDPFGNYLVQYIIE----KKVGGVNVLFELRGNYVKLATQK 471
Query: 813 YGCRVIQRVLEHCADKHQCQFIVDEILD--NVCALAQDQYGNYVTQHVLQRGKPLERSKI 870
+G V+++ L + + Q IV+E++ N L QD Y NYV Q L + K R+ +
Sbjct: 472 FGSHVVEKCLRYYPESRS-Q-IVNELVSVLNFGYLLQDPYANYVIQCALSKTKGFVRASL 529
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCL 895
+ K+ + L + + K L
Sbjct: 530 VEKVRRY-ENLKMTPYCKRIFSKNL 553
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 406 (148.0 bits), Expect = 9.9e-36, P = 9.9e-36
Identities = 100/320 (31%), Positives = 173/320 (54%)
Query: 656 DITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFE 715
+I G + + DQ G R +Q+ +E + E + I+ H +L D FGNY++QK F+
Sbjct: 249 EIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFD 308
Query: 716 YGSPAQRKELANQLVG---QILPLSMQMYGCRVIQKALETIEIEQKAQLVRE-LDGQVMR 771
QR + + L +++ + + YG RV+QK +ET++ +Q+ LV+ L +
Sbjct: 309 VSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLA 368
Query: 772 CVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQC 831
V+D NGNHVIQ C++ + P F++ A A +++H +GC V+Q + + Q
Sbjct: 369 LVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGL-QR 427
Query: 832 QFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVI 891
+ +V EI N L+QD +GNYV Q+++ + + K++ + H +L+ KF+S+VI
Sbjct: 428 ERLVAEISRNSLHLSQDPFGNYVVQYLIDQ--QVSAVKLLVQFRMHYAELATQKFSSHVI 485
Query: 892 EKCLA-YGGPAERELIIEEILG-HNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSR 949
EKCL Y P R I+ E+L N E LL +D +ANYV+Q ++ +A ++++
Sbjct: 486 EKCLRKY--PESRAEIVRELLCVPNFEYLL---QDPYANYVIQTALSVTKGPVRAKLVAK 540
Query: 950 IRTHAHVLKKYTYGKHIVAR 969
+ + L Y K I ++
Sbjct: 541 VYRYGK-LHSSPYCKKIFSK 559
Score = 237 (88.5 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 65/262 (24%), Positives = 123/262 (46%)
Query: 716 YG--SPAQRKELAN--QLVGQILPLSMQMYGCRVIQKALETIEI-EQKAQLVRELDGQVM 770
YG SP +L + ++ G + ++ GCRV+QK +E E K L+ +D V+
Sbjct: 233 YGKMSPKSNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIID-HVV 291
Query: 771 RCVRDQNGNHVIQKCIECIPPEKIGFIISAFCG---QVAALSMHPYGCRVIQRVLEHCAD 827
D GN+++QK + E+ I+S ++ + ++ YG RV+Q+++E
Sbjct: 292 ELSMDPFGNYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKT 351
Query: 828 KHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
K Q + + AL +D GN+V Q LQ P + ++ + + +++ H+
Sbjct: 352 KQQIALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHG 411
Query: 888 SNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMML 947
V++ C++ +RE ++ EI N L + +D F NYVVQ + + + +L
Sbjct: 412 CCVLQCCISNSVGLQRERLVAEI-SRNS---LHLSQDPFGNYVVQYLID--QQVSAVKLL 465
Query: 948 SRIRTHAHVLKKYTYGKHIVAR 969
+ R H L + H++ +
Sbjct: 466 VQFRMHYAELATQKFSSHVIEK 487
Score = 181 (68.8 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 80/332 (24%), Positives = 145/332 (43%)
Query: 616 VSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQ 675
VS + + RGF D + + E SGK L D V +G
Sbjct: 184 VSQTLAAMEASRGFYPEEDSSLLSPFHEKVSGKLGASYLEDT----VLIGQGSYG----- 234
Query: 676 QKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILP 735
K+ S ++ S+ EI + + D G V+QK E G+ + K + ++ ++
Sbjct: 235 -KMSPKSNNDLVSMV-EIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVE 292
Query: 736 LSMQMYGCRVIQKALETIEIEQKAQLVRELDG---QVMRCVRDQNGNHVIQKCIECIPP- 791
LSM +G ++QK + + EQ+ +V L +++R + G V+QK IE +
Sbjct: 293 LSMDPFGNYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTK 352
Query: 792 EKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCA-LAQDQY 850
++I + S AL G VIQ L+ +F++ E CA +A ++
Sbjct: 353 QQIALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDN-EFVL-EAATKYCAEIAIHRH 410
Query: 851 GNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
G V Q + L+R +++ ++S + + LSQ F + V++ + A + L+ +
Sbjct: 411 GCCVLQCCISNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAVKLLV--QF 468
Query: 911 LGHNEETLLTMMKDQFANYVVQKIFELSSESQ 942
H E L T +F+++V++K ES+
Sbjct: 469 RMHYAE-LATQ---KFSSHVIEKCLRKYPESR 496
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 391 (142.7 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 99/320 (30%), Positives = 170/320 (53%)
Query: 656 DITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFE 715
+I G + + DQ G R +Q+ +E +V + +F EI+ H +L D GNY++QK
Sbjct: 213 EIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLV 272
Query: 716 YGSPAQRKELANQLVG---QILPLSMQMYGCRVIQKALETIEIEQKAQLVRE-LDGQVMR 771
QR + + L +++ + + G RVIQK ++T++ +Q+ LV+ L+ +
Sbjct: 273 VSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLV 332
Query: 772 CVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQC 831
V D NG HV+Q C+E + P F++ A A L+ H YGC V+Q L + Q
Sbjct: 333 LVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGL-QH 391
Query: 832 QFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVI 891
+ +V EI + L+QD +GNYV Q ++ + + ++ H ++L+ KF+S+VI
Sbjct: 392 ERLVAEISRDSLRLSQDPFGNYVVQCLIDQ--QVSSVNLLLPFRTHCIELATQKFSSHVI 449
Query: 892 EKCLA-YGGPAERELIIEEILGH-NEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSR 949
EKCL Y P R I+ E+L + N E LL +D +ANYV+Q ++ + +A ++ +
Sbjct: 450 EKCLRKY--PESRAEIVRELLSYPNFEQLL---QDPYANYVIQTALSVTKGAVRARLVEK 504
Query: 950 IRTHAHVLKKYTYGKHIVAR 969
++ L+ Y K I ++
Sbjct: 505 VKRFGK-LQSNPYCKKIFSK 523
Score = 125 (49.1 bits), Expect = 0.00033, P = 0.00033
Identities = 35/145 (24%), Positives = 69/145 (47%)
Query: 837 EILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLA 896
EI +V +A+DQ G Q +++ G L+ I ++ H+V+LS + +++K L
Sbjct: 213 EIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLV 272
Query: 897 YGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQ-AMMLSRIRTHAH 955
+R +I+ +L L+ + + V+QK+ + QQ A++ S +
Sbjct: 273 VSDEEQRTMIVS-VLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFL 331
Query: 956 VLKKYTYGKHIVAR-FEMLIGEENQ 979
VL + G H++ E L+ +N+
Sbjct: 332 VLVNDSNGYHVLQSCLEFLVPNDNK 356
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 388 (141.6 bits), Expect = 7.1e-33, Sum P(2) = 7.1e-33
Identities = 88/312 (28%), Positives = 171/312 (54%)
Query: 665 SADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKE 724
S DQ S F+QQKL+ S D K ++ I+ LM + FGN+++Q+ FE+G+ Q ++
Sbjct: 370 SNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQ 429
Query: 725 LANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQK 784
+ + ++G +L L+ +GC V+QKA++ + + K ++ EL + + HV QK
Sbjct: 430 MGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQK 489
Query: 785 CIEC----IPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA--DKHQCQFIVDEI 838
E P + + +A G+ +++ G V+Q + E+C DK +C ++EI
Sbjct: 490 LFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKREC---IEEI 546
Query: 839 LDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYG 898
+ ++ +A+ Q+GN+V QH+++ G+ + ++I L V+ S +FAS VIEK + G
Sbjct: 547 IFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSG 606
Query: 899 GPAERELIIEEI----LGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHA 954
L +++I + + L+ + DQ+ NY++Q+I +L +++ ++++ I+ H
Sbjct: 607 PKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHM 666
Query: 955 HVLKKYTYGKHI 966
L+ YG+ +
Sbjct: 667 VSLRGSKYGQKV 678
Score = 205 (77.2 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 58/247 (23%), Positives = 112/247 (45%)
Query: 655 SDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFF 714
S + G++++ + D G +Q+ ++N + D K ++ E+ + + +V QK F
Sbjct: 432 SAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLF 491
Query: 715 E---YGSPAQ-RKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVM 770
E Y P + N L G+ +++ G V+Q E + K + + E+ +
Sbjct: 492 ETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLD 551
Query: 771 RCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQ 830
R Q GN V+Q +E E + +I A + S+ + +VI++ ++
Sbjct: 552 GIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFI 611
Query: 831 CQFI-------VDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQ 883
++ VD + +A DQYGNY+ Q ++Q G+P E++ +I + H+V L
Sbjct: 612 SLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRG 671
Query: 884 HKFASNV 890
K+ V
Sbjct: 672 SKYGQKV 678
Score = 147 (56.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 45/189 (23%), Positives = 87/189 (46%)
Query: 663 EFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQR 722
E + ++GS +Q ENC +K +EI+ H + +GN+V+Q E G
Sbjct: 516 EVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDL 575
Query: 723 KELANQLVGQILPLSMQMYGCRVIQKALET-----IEIEQKAQLVRELDGQ---VMRCVR 774
K + + L+ + + S+ + +VI+KA+++ I + K +D ++
Sbjct: 576 KRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIAS 635
Query: 775 DQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFI 834
DQ GN++IQ+ I+ P + +I+ + +L YG Q+V + +K Q
Sbjct: 636 DQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRGSKYG----QKVA-YLVEKWNSQKQ 690
Query: 835 VDEILDNVC 843
V +++ C
Sbjct: 691 VSSVINYNC 699
Score = 49 (22.3 bits), Expect = 7.1e-33, Sum P(2) = 7.1e-33
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 86 NLANFNGNIRNSESEERLQANQTCLKYYGSNVNLNPRLPRHLDHDLNRFGNRRGLTSLDN 145
+LANF + +S L + +T ++Y S + P P +D NR ++ N
Sbjct: 223 SLANFQSDNCKLKSHNSLPSIRTNVRYSNSKPS-TPLSPEDVDLGTYTVKNRDSWSNEVN 281
Query: 146 SSNCSVHVSQVTLSTHKEES-EDDRSPKH 173
S + ++S T T K S RS +
Sbjct: 282 LSASTNNLSTNTSGTLKPYSLSSSRSSSY 310
Score = 41 (19.5 bits), Expect = 4.9e-32, Sum P(2) = 4.9e-32
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 228 SSSLRDPSVISSNGV-STTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTP 280
SSSL +SSN + ST T V + V + SSS + + + P
Sbjct: 150 SSSLNYSRKLSSNSIKSTNAPVFGTAVKN-VTGENILSASSSEENLNSNRNGDP 202
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 359 (131.4 bits), Expect = 8.0e-30, P = 8.0e-30
Identities = 89/316 (28%), Positives = 162/316 (51%)
Query: 664 FSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRK 723
F DQ S +QQ+L+N +++ ++ ILP + LM + FGN++IQK FEY + AQ +
Sbjct: 263 FQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQ 322
Query: 724 ELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQ 783
+ L + LS+ +G V+QK+LE L+ EL + + ++ HV Q
Sbjct: 323 SFSYFLKKHVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQ 382
Query: 784 KCIECIPPEKIGFIISAFC----GQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEIL 839
K E + I F G+ +S+ G V+Q + E+C +K + + +DEI+
Sbjct: 383 KFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDK-RTCLDEII 441
Query: 840 DNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGG 899
+N+ + Q+GN+V QH+++ G ++ +I+ L + S +++AS V+E+ L
Sbjct: 442 NNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCH 501
Query: 900 PAERELIIEEILGHNEET----LLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAH 955
+ ++EI E L + +Q+ NY+VQ + ++++ SQ +M ++ H
Sbjct: 502 VTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMV 561
Query: 956 VLKKYTYGKHIVARFE 971
L+ + YG+ I A E
Sbjct: 562 SLRGHKYGQRIAALVE 577
Score = 187 (70.9 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 64/247 (25%), Positives = 115/247 (46%)
Query: 660 HIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSP 719
H+ E S D GS +Q+ LE ++ +E++ + +V QKFFE
Sbjct: 331 HVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFE---- 386
Query: 720 AQRKELAN--------QLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMR 771
+RK L + ++ G+ L +S+ G V+Q E + + K + E+ + +
Sbjct: 387 TRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINNMDQ 446
Query: 772 CVRDQNGNHVIQKCIEC-IPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA---- 826
+ Q GN VIQ IE P+K I+++ +V + S + Y +V++R L C
Sbjct: 447 IICGQWGNWVIQHIIEHGSEPDKQR-ILNSLLKEVESYSTNRYASKVVERALRVCHVTFF 505
Query: 827 DKHQCQFIVDEI-LDNVCA--LAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQ 883
D++ + + L + +A +QYGNY+ Q++LQ P + + + L H+V L
Sbjct: 506 DRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRG 565
Query: 884 HKFASNV 890
HK+ +
Sbjct: 566 HKYGQRI 572
Score = 171 (65.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 39/167 (23%), Positives = 79/167 (47%)
Query: 659 GHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGS 718
G ++ S + GS +Q ENC +K + EI+ + +++ +GN+VIQ E+GS
Sbjct: 406 GKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINNMDQIICGQWGNWVIQHIIEHGS 465
Query: 719 PAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQ--------VM 770
++ + N L+ ++ S Y +V+++AL + + V+E+ +
Sbjct: 466 EPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNELPTIFLQ 525
Query: 771 RCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRV 817
+Q GN+++Q ++ P +I + + +L H YG R+
Sbjct: 526 EIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYGQRI 572
Score = 42 (19.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 116 NVNL-NPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKH 173
N+NL N LP + N+FGN + S+ + L H +E D H
Sbjct: 285 NINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSH 343
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 357 (130.7 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
Identities = 86/246 (34%), Positives = 137/246 (55%)
Query: 662 VEFSADQHGSRFIQQKLENCSVDEKAS--VFKEILPHASKLMTDVFGNYVIQKFFEYGSP 719
++ + DQ G RF+Q+KLE S ++++I P L+ D FGNY++QK +Y +
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 720 AQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLV-----RELDG--QVMRC 772
Q+ L + + +S+ YG R +QK ++T++ E + L+ +E QV+
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTL 335
Query: 773 VRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ--VAALSMHPYGCRVIQRVLEHCADKHQ 830
+ D NGNHVIQKCI P K GFII A Q + +S H +GC V+Q++L C +
Sbjct: 336 INDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQI 395
Query: 831 CQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE---RSKIIRKLSGHIVQLSQHKFA 887
+ V +I+ + L DQ+GNY+ Q +L K L+ +++ +LS + QLS KF+
Sbjct: 396 FKISV-KIVQFLPGLINDQFGNYIIQFLLDI-KELDFYLLAELFNRLSNELCQLSCLKFS 453
Query: 888 SNVIEK 893
SNV+EK
Sbjct: 454 SNVVEK 459
Score = 179 (68.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 59/252 (23%), Positives = 120/252 (47%)
Query: 734 LPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMR-----CVRDQNGNHVIQKCIEC 788
+ L+ +GCR +QK LET ++ +VR+L + ++ + D GN+++QK +
Sbjct: 216 IKLATDQFGCRFLQKKLET---PSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDY 272
Query: 789 IPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIV----DEI--LDNV 842
+ E+ +I V +S++ YG R +Q++++ ++ Q I+ E ++ V
Sbjct: 273 LTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQV 332
Query: 843 CALAQDQYGNYVTQHVLQRGKPLERSKIIRKL--SGHIVQLSQHKFASNVIEKCLAYGGP 900
L D GN+V Q + + P + II + +I+ +S HK V++K L+
Sbjct: 333 VTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTL 392
Query: 901 AERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQ--AMMLSRIRTHAHVLK 958
+ I +I+ + L ++ DQF NY++Q + ++ A + +R+ L
Sbjct: 393 QQIFKISVKIV----QFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLS 448
Query: 959 KYTYGKHIVARF 970
+ ++V +F
Sbjct: 449 CLKFSSNVVEKF 460
Score = 39 (18.8 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 230 SLRDPSVI--SSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSH 270
S D +V+ S++GV+T++ T SS ++ N S+S++
Sbjct: 138 SSHDFTVVAPSNSGVNTSSLIMETPSSSVTPAASLRNFSNSNN 180
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 301 (111.0 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 81/262 (30%), Positives = 144/262 (54%)
Query: 654 LSDITGH--IVEFSADQHGSRFIQQKL--ENCSVDEKASVFKEILPHAS---KLMTDVFG 706
L D+ + +VEF+ D++G RF+Q+ EN + D +F++++ + L +++FG
Sbjct: 137 LQDVLANDALVEFATDKNGCRFLQEHYPTENDN-DVHQKLFRKLVEDRAIFLSLCSNMFG 195
Query: 707 NYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVREL- 765
N+ +Q+ E + +++ L L + L + CRVIQ A++ +++ +L EL
Sbjct: 196 NFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELR 255
Query: 766 DGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ--VAALSMHPYGCRVIQRVLE 823
D ++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ +E
Sbjct: 256 DTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVE 315
Query: 824 HCA-DKH-QCQ----FIVDEILDNV---CA-LAQDQYGNYVTQHVLQRGKPLE--RSKII 871
+ D++ QC ++ ++ V C LA +++ NYV QHV++ G L R II
Sbjct: 316 TLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIII 375
Query: 872 RK-LSGHIVQLSQHKFASNVIE 892
+ L +++ +SQ K+AS+V+E
Sbjct: 376 EQCLLQNLLSMSQEKYASHVVE 397
Score = 166 (63.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 90/336 (26%), Positives = 150/336 (44%)
Query: 666 ADQHGSRFIQQKLENCSVDEKASVFKEILP-HASKLMTDVFGNYVIQKFFEYGSPAQRKE 724
++ G+ F+Q+ LE CS E+ + E L L D VIQ +
Sbjct: 191 SNMFGNFFVQRVLE-CSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATR 249
Query: 725 LANQLVG-QILPLSMQMYGCRVIQKALETIEIEQKAQLVREL--DGQVMRCVRDQNGNHV 781
L+ +L ++ LS+ G VIQK ++T+ + LV D ++ +D+ G V
Sbjct: 250 LSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRV 309
Query: 782 IQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDN 841
IQ +E + ++ A C Q H RVI +L ++ + N
Sbjct: 310 IQSTVETLSTDQY-----AQCYQ------H----RVI--LLRS---------LMAGVTRN 343
Query: 842 VCALAQDQYGNYVTQHVLQRGKPLE--RSKIIRK-LSGHIVQLSQHKFASNVIE---KCL 895
LA +++ NYV QHV++ G L R II + L +++ +SQ K+AS+V+E +C
Sbjct: 344 CTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLLQNLLSMSQEKYASHVVEVAFECA 403
Query: 896 AYGGPAER-ELIIEEILGH---NEETLLTMMKDQFANYVVQKIFELSSESQQA------- 944
Y AE I E + H N + L ++ Q+ NYVVQ++ + Q A
Sbjct: 404 PYRLVAEMMNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQQMIQTCVLGQNARDQKQSE 463
Query: 945 ---MMLS----RIRTHAHVLKKYTYGKHIVARFEML 973
M L R+ +AH L++++ GK I+ + +
Sbjct: 464 MYGMWLEKIHGRVMRNAHRLERFSSGKKIIEALQSM 499
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 301 (111.0 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 81/262 (30%), Positives = 144/262 (54%)
Query: 654 LSDITGH--IVEFSADQHGSRFIQQKL--ENCSVDEKASVFKEILPHAS---KLMTDVFG 706
L D+ + +VEF+ D++G RF+Q+ EN + D +F++++ + L +++FG
Sbjct: 137 LQDVLANDALVEFATDKNGCRFLQEHYPTENDN-DVHQKLFRKLVEDRAIFLSLCSNMFG 195
Query: 707 NYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVREL- 765
N+ +Q+ E + +++ L L + L + CRVIQ A++ +++ +L EL
Sbjct: 196 NFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELR 255
Query: 766 DGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ--VAALSMHPYGCRVIQRVLE 823
D ++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ +E
Sbjct: 256 DTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQSTVE 315
Query: 824 HCA-DKH-QCQ----FIVDEILDNV---CA-LAQDQYGNYVTQHVLQRGKPLE--RSKII 871
+ D++ QC ++ ++ V C LA +++ NYV QHV++ G L R II
Sbjct: 316 TLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIKCGDALAVYRDIII 375
Query: 872 RK-LSGHIVQLSQHKFASNVIE 892
+ L +++ +SQ K+AS+V+E
Sbjct: 376 EQCLLQNLLSMSQEKYASHVVE 397
Score = 166 (63.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 90/336 (26%), Positives = 150/336 (44%)
Query: 666 ADQHGSRFIQQKLENCSVDEKASVFKEILP-HASKLMTDVFGNYVIQKFFEYGSPAQRKE 724
++ G+ F+Q+ LE CS E+ + E L L D VIQ +
Sbjct: 191 SNMFGNFFVQRVLE-CSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATR 249
Query: 725 LANQLVG-QILPLSMQMYGCRVIQKALETIEIEQKAQLVREL--DGQVMRCVRDQNGNHV 781
L+ +L ++ LS+ G VIQK ++T+ + LV D ++ +D+ G V
Sbjct: 250 LSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRV 309
Query: 782 IQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDN 841
IQ +E + ++ A C Q H RVI +L ++ + N
Sbjct: 310 IQSTVETLSTDQY-----AQCYQ------H----RVI--LLRS---------LMAGVTRN 343
Query: 842 VCALAQDQYGNYVTQHVLQRGKPLE--RSKIIRK-LSGHIVQLSQHKFASNVIE---KCL 895
LA +++ NYV QHV++ G L R II + L +++ +SQ K+AS+V+E +C
Sbjct: 344 CTQLASNEFANYVVQHVIKCGDALAVYRDIIIEQCLLQNLLSMSQEKYASHVVEVAFECA 403
Query: 896 AYGGPAER-ELIIEEILGH---NEETLLTMMKDQFANYVVQKIFELSSESQQA------- 944
Y AE I E + H N + L ++ Q+ NYVVQ++ + Q A
Sbjct: 404 PYRLVAEMMNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQQMIQTCVLGQNARDQKQSE 463
Query: 945 ---MMLS----RIRTHAHVLKKYTYGKHIVARFEML 973
M L R+ +AH L++++ GK I+ + +
Sbjct: 464 MYGMWLEKIHGRVMRNAHRLERFSSGKKIIEALQSM 499
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 310 (114.2 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 85/308 (27%), Positives = 147/308 (47%)
Query: 651 RFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEK----AS---VFKEILPHASKLMTD 703
+ L+ + I++ + DQ+G RF+Q+K++ V A+ +F +I H +L+ D
Sbjct: 276 KLPLTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVD 335
Query: 704 VFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIE-IEQKAQLV 762
FGNY+IQK Y + + L L + +S+ +G R +QK ++++ Q L+
Sbjct: 336 PFGNYLIQKLIVYCNESNLDLLMEILQYNLFQISINQHGTRALQKIIDSLNNSHQLGLLI 395
Query: 763 RELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVL 822
+ L ++ ++D NGNHVIQK + P FI + + ++ H +GC V+Q+ L
Sbjct: 396 KGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCL 455
Query: 823 EHCADKHQCQFIVDEI-LDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGH-IVQ 880
H + +F + +N L DQ+GNYV Q+++ +I + I
Sbjct: 456 NHVTLQQLGEFSRAILKFENFKLLINDQFGNYVLQYLISINSLDINFQIFQNFVNFGISN 515
Query: 881 LSQHKFASNVIEKCL--AYGGPAER----ELIIEEILGHNEETLLTMMKDQFANYVVQKI 934
L KF+SNV+EK L Y + L E I L ++ D + NYV+Q +
Sbjct: 516 LCNLKFSSNVVEKFLKNCYANESVNVSFSNLKFELIYIILVSDLNVLINDPYGNYVIQTM 575
Query: 935 FELSSESQ 942
++ Q
Sbjct: 576 IDIMVNPQ 583
Score = 201 (75.8 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 57/232 (24%), Positives = 109/232 (46%)
Query: 715 EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL-ETIEIEQKAQLVR------ELDG 767
EY + + L QL +IL L+ YGCR +QK + E++ + +L ++
Sbjct: 269 EYLASINKLPLT-QLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYS 327
Query: 768 QVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCAD 827
V + D GN++IQK I + ++ + +S++ +G R +Q++++ +
Sbjct: 328 HVYELIVDPFGNYLIQKLIVYCNESNLDLLMEILQYNLFQISINQHGTRALQKIIDSLNN 387
Query: 828 KHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFA 887
HQ ++ + + L +D GN+V Q +L + +P + I + + ++ HK
Sbjct: 388 SHQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHG 447
Query: 888 SNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSS 939
V++KCL + + IL LL + DQF NYV+Q + ++S
Sbjct: 448 CCVLQKCLNHVTLQQLGEFSRAILKFENFKLL--INDQFGNYVLQYLISINS 497
Score = 40 (19.1 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 132 NRFGNRRGLTSLDNSSNCSVHVSQVT 157
N+ GN LTS D+ N V+ S V+
Sbjct: 167 NKGGNN--LTSFDDKENIMVNKSVVS 190
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 298 (110.0 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 81/267 (30%), Positives = 147/267 (55%)
Query: 654 LSDITGH--IVEFSADQHGSRFIQQKLENCSVDE-KASVFKEILPHAS---KLMTDVFGN 707
L D+ + +VEF+ D++G RF+Q+ S ++ +F++++ + L ++FGN
Sbjct: 140 LPDVLANDALVEFATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGN 199
Query: 708 YVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVREL-D 766
+ +Q+ E + +++ L L + L + CRVIQ A++ +++ +L EL D
Sbjct: 200 FFVQRVLECSNTEEQEILTEHLASDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRD 259
Query: 767 GQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ--VAALSMHPYGCRVIQRVLEH 824
++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ +E
Sbjct: 260 TYLVRLSIDQNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQSTVET 319
Query: 825 CA-DKH-QC--QFIV--DEILDNV---CA-LAQDQYGNYVTQHVLQRGKPLE--RSKIIR 872
+ D + +C Q +V ++ V C+ LA +++ NYV QHV++ G + R II
Sbjct: 320 LSSDTYAECYQQRVVLLRSLMSGVTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDVIIE 379
Query: 873 K-LSGHIVQLSQHKFASNVIEKCLAYG 898
+ L +++ +SQ K+AS+V+E +A+G
Sbjct: 380 QCLLQNLLSMSQEKYASHVVE--VAFG 404
Score = 161 (61.7 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 88/334 (26%), Positives = 153/334 (45%)
Query: 670 GSRFIQQKLENCSVDEKASVFKEILPH-ASKLMTDVFGNYVIQKFFEYGSPAQRKELANQ 728
G+ F+Q+ LE CS E+ + E L L D VIQ + L+ +
Sbjct: 198 GNFFVQRVLE-CSNTEEQEILTEHLASDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLE 256
Query: 729 LVGQILP-LSMQMYGCRVIQKALETIEIEQKAQLVREL--DGQVMRCVRDQNGNHVIQKC 785
L L LS+ G VIQK ++T+ + + +V D ++ +D+ G VIQ
Sbjct: 257 LRDTYLVRLSIDQNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQST 316
Query: 786 IECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCAL 845
+E + + A C Q QRV+ + ++ + N L
Sbjct: 317 VETLSSDTY-----AECYQ--------------QRVV-------LLRSLMSGVTRNCSQL 350
Query: 846 AQDQYGNYVTQHVLQRGKPLE--RSKIIRK-LSGHIVQLSQHKFASNVIEKCLAYG-GPA 901
A +++ NYV QHV++ G + R II + L +++ +SQ K+AS+V+E +A+G P
Sbjct: 351 ASNEFANYVVQHVIKCGDAMAVYRDVIIEQCLLQNLLSMSQEKYASHVVE--VAFGCAPC 408
Query: 902 E--REL---IIEEILGH---NEETLLTMMKDQFANYVVQKIFEL------SSESQQA--- 944
E+ I E + H N + L ++ Q+ NYVVQK+ ++ + + +QA
Sbjct: 409 RLAAEMMNEIFEGYIPHPDTNRDALDILLFHQYGNYVVQKMIQICVLGQNARDQKQAEMY 468
Query: 945 -MMLSRIRT----HAHVLKKYTYGKHIVARFEML 973
M L +IR +A+ L++++ GK I+ + +
Sbjct: 469 GMWLEKIRERVMRNANRLERFSSGKKIIEALQSM 502
Score = 38 (18.4 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 57 RSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQA 105
R +PP E ++ +N +S+ N+ N N+ +S +R+ +
Sbjct: 12 RYHESPPTTEARNVSGKNTFGGCFNSNSSNIWTPNRNVDSSMGFQRVSS 60
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 285 (105.4 bits), Expect = 7.2e-22, P = 7.2e-22
Identities = 79/276 (28%), Positives = 148/276 (53%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDE-KASVFKEILPHASKLMTDVF----GNYVIQ 711
+ G +++F+ D G +F++ S D+ + +VF++ L ++ L + GN+++Q
Sbjct: 89 LNGLLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEK-LTESTTLFVGLCHSRNGNFIVQ 147
Query: 712 KFFEYGSPAQRKELANQLV-GQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDG-QV 769
K E +PA+++EL Q++ G +L + + CRV+Q AL+ + QL++EL +
Sbjct: 148 KLVELATPAEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDL 207
Query: 770 MRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCG--QVAALSMHPYGCRVIQRVLEHCAD 827
DQ HVIQ+ ++ +P + F + + A+ YGCR++Q+V++ A+
Sbjct: 208 AAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAE 267
Query: 828 --KHQC-QF-------IVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE--RSKIIRK-L 874
K C +F ++ I+ N L+ +++ NYV Q+V++ +E R II K L
Sbjct: 268 NPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCL 327
Query: 875 SGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
+++ +SQ K+AS+VIE + PA ++EEI
Sbjct: 328 LRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEI 363
Score = 128 (50.1 bits), Expect = 0.00014, P = 0.00014
Identities = 36/110 (32%), Positives = 62/110 (56%)
Query: 838 ILDNVCALAQDQYGNYVTQHVLQRGKPLE--RSKIIRK-LSGHIVQLSQHKFASNVIEKC 894
I+ N L+ +++ NYV Q+V++ +E R II K L +++ +SQ K+AS+VIE
Sbjct: 288 IVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGA 347
Query: 895 LAYGGPAERELIIEEIL-GH------NEETLLTMMKDQFANYVVQKIFEL 937
+ PA ++EEI G+ N + L ++ Q+ NYVVQ++ +
Sbjct: 348 FLFAPPALLHEMMEEIFSGYVKDVELNRDALDILLFHQYGNYVVQQMISI 397
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 285 (105.4 bits), Expect = 7.2e-22, P = 7.2e-22
Identities = 78/275 (28%), Positives = 145/275 (52%)
Query: 657 ITGHIVEFSADQHGSRFIQQKLENCSVDE-KASVFKEILPHASK---LMTDVFGNYVIQK 712
+ G +++F+ D G +F++ S D+ + +VF++ + L GN+++QK
Sbjct: 89 LNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQK 148
Query: 713 FFEYGSPAQRKELANQLV-GQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDG-QVM 770
E +PA+++EL Q++ G +L + + CRV+Q AL+ + QL++EL +
Sbjct: 149 LVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLA 208
Query: 771 RCVRDQNGNHVIQKCIECIPPEKIGFIISAFCG--QVAALSMHPYGCRVIQRVLEHCAD- 827
DQ HVIQ+ ++ +P + F + + A+ YGCR++Q+V++ A+
Sbjct: 209 AMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAEN 268
Query: 828 -KHQC-QF-------IVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE--RSKIIRK-LS 875
K C +F ++ I+ N L+ +++ NYV Q+V++ +E R II K L
Sbjct: 269 PKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLL 328
Query: 876 GHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEI 910
+++ +SQ K+AS+VIE + PA ++EEI
Sbjct: 329 RNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEI 363
Score = 128 (50.1 bits), Expect = 0.00014, P = 0.00014
Identities = 36/110 (32%), Positives = 62/110 (56%)
Query: 838 ILDNVCALAQDQYGNYVTQHVLQRGKPLE--RSKIIRK-LSGHIVQLSQHKFASNVIEKC 894
I+ N L+ +++ NYV Q+V++ +E R II K L +++ +SQ K+AS+VIE
Sbjct: 288 IVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGA 347
Query: 895 LAYGGPAERELIIEEIL-GH------NEETLLTMMKDQFANYVVQKIFEL 937
+ PA ++EEI G+ N + L ++ Q+ NYVVQ++ +
Sbjct: 348 FLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISI 397
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 252 (93.8 bits), Expect = 2.6e-18, Sum P(3) = 2.6e-18
Identities = 91/349 (26%), Positives = 157/349 (44%)
Query: 638 CNFLE-ELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPH 696
C FL+ EL + ++I VE D G+ IQ+ +++++ + +
Sbjct: 458 CRFLQRELINETNATLIFNEIYFKAVELMIDPFGNYLIQKLFTMINLEQRLVLINQCSNE 517
Query: 697 ASKLMTDVFGNYVIQKFFEYGSPAQRKELANQ-LVGQILPLSMQMYGCRVIQKAL---ET 752
++ D G +QK + + E+ + L I+ LS + G V+QK L T
Sbjct: 518 LFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDLNGNHVVQKILTKFNT 577
Query: 753 IEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHP 812
I + + DG + QN N FI + ++ H
Sbjct: 578 ISSDSNSSDSNR-DG-----AQHQNQNQ---------------FIFDIIQANLLYIACHR 616
Query: 813 YGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQR---GKPLERSK 869
+GC V+QR L++ +K QCQ + EI + L+ D YGNYV Q+VL + G + +
Sbjct: 617 HGCCVLQRCLDY-GNKQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTD 675
Query: 870 ------IIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMK 923
II+++ + +QLS HKF SNVIEKCL ++LI I+ + + ++
Sbjct: 676 NQVIDIIIQEIKSNFIQLSLHKFGSNVIEKCLKISS-ISKDLIDNLIVLDHGQAFNQLLN 734
Query: 924 DQFANYVVQKIFELSSESQQAMMLSRIRTHAHV-LKKYTYGKHIVARFE 971
D F NYV+Q ++++ +Q LS+I +K +G+ I+ + +
Sbjct: 735 DPFGNYVLQTSLDVAN-LEQFEQLSKILLPLLPNIKSTPHGRRILNKIQ 782
Score = 236 (88.1 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 55/150 (36%), Positives = 85/150 (56%)
Query: 639 NFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKAS-VFKEILPHA 697
N + S K +L D TG I+ DQHG RF+Q++L N + A+ +F EI A
Sbjct: 426 NLRRKEDSAKYSDAKLQDFTGSILTLCKDQHGCRFLQRELIN---ETNATLIFNEIYFKA 482
Query: 698 SKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQ 757
+LM D FGNY+IQK F + QR L NQ ++ +++ +G R +QK ++ IE +
Sbjct: 483 VELMIDPFGNYLIQKLFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNE 542
Query: 758 KAQLV-RELDGQVMRCVRDQNGNHVIQKCI 786
+ +++ R L ++ RD NGNHV+QK +
Sbjct: 543 EIEIITRNLYSNIVVLSRDLNGNHVVQKIL 572
Score = 151 (58.2 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 45/206 (21%), Positives = 96/206 (46%)
Query: 731 GQILPLSMQMYGCRVIQKALETIEIEQKAQLV-RELDGQVMRCVRDQNGNHVIQKCIECI 789
G IL L +GCR +Q+ E I E A L+ E+ + + + D GN++IQK I
Sbjct: 446 GSILTLCKDQHGCRFLQR--ELIN-ETNATLIFNEIYFKAVELMIDPFGNYLIQKLFTMI 502
Query: 790 PPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQ 849
E+ +I+ ++ +++ P+G R +Q++++ + + I + N+ L++D
Sbjct: 503 NLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDL 562
Query: 850 YGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ-LSQHKFASNVIEKCLAYGGPAERE--LI 906
GN+V Q +L + + + Q +Q++F ++I+ L Y R +
Sbjct: 563 NGNHVVQKILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIA-CHRHGCCV 621
Query: 907 IEEILGHNEETLLTMMKDQFANYVVQ 932
++ L + + + + A + ++
Sbjct: 622 LQRCLDYGNKQQCQQLSQEIAKHTIK 647
Score = 56 (24.8 bits), Expect = 2.6e-18, Sum P(3) = 2.6e-18
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 218 NQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVD-VSTAYNVSSSSHDWTATI 276
N +H G S+SSS DPS + NG +T+ N+ S + + ++ T +
Sbjct: 44 NNTHGAG-SNSSSSNDPSFL--NGENTSANCTNSTESDDNELIEPTKDIDIVGAISTLHL 100
Query: 277 SSTPPTEEVTSNDTD 291
EE T+ T+
Sbjct: 101 DDDDEDEEATTTGTN 115
Score = 45 (20.9 bits), Expect = 2.6e-18, Sum P(3) = 2.6e-18
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 492 PSFANPLHLQYYQQPFGE 509
P+ NPLH + PFG+
Sbjct: 346 PTMWNPLHSPLVRLPFGQ 363
Score = 37 (18.1 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 37 LGLLQKGCDVHGSVQRAVPNRSGSAPPNMEGS--FLAI-ENLIARKSSSSGVNLAN 89
L LL+K D G + N S S P +G+ F+ + +N+ +S L N
Sbjct: 202 LPLLEKILDSEGRTKDNDQNISSSKPQFYDGAIPFVPVNQNVTGNGNSQIPPPLGN 257
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 238 (88.8 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 79/311 (25%), Positives = 152/311 (48%)
Query: 646 SGKGR-RFELSDI--TGHIVEFSADQHGSRFIQQKLENCSVD-EKASVFKEILPHAS--- 698
+G+ R R LS++ +G +++F+ D+ G +F+++ ++ +K +F++++
Sbjct: 176 NGEMRSRLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFL 235
Query: 699 KLMTDVFGNYVIQKFF-------EYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALE 751
KL T++FGNY++Q + G ++++L N + Q+ + + + CRVIQ +L+
Sbjct: 236 KLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQ 295
Query: 752 TIEIEQKAQLVREL--DGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIIS--AFCGQVAA 807
+++ +LV+ L D +++ DQN NHVIQK + IP + FI+ A +
Sbjct: 296 NMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQ 355
Query: 808 LSMHPYGCRVIQRVLEHC-ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE 866
+ YGCRV+Q ++E AD VD L + +++ + V R + L
Sbjct: 356 ICSDKYGCRVVQTIIEKLTADSMN----VD--LTSAAQNLRERALQRLMTSVTNRCQELA 409
Query: 867 RSKIIRKLSGHIVQLSQHK-FASNVIEKCLAYG--GPAEREL---IIEEILGHNEETLLT 920
++ + HIV + +IEKCL ++ + ++E+ H LL
Sbjct: 410 TNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLA 469
Query: 921 MMKDQ-FANYV 930
M D+ F Y+
Sbjct: 470 EMMDEIFDGYI 480
Score = 139 (54.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 85/360 (23%), Positives = 161/360 (44%)
Query: 638 CNFLEELKSGK---GRRFELSD-ITGHIVEF---SADQHGSRFIQQKL--ENCSVDEKAS 688
C FLE+ G ++F+L + + G +F S + G+ +Q + + D+ +
Sbjct: 204 CQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYT 263
Query: 689 VFKEILPH-ASKLMTDV----FGNYVIQKFFEYGSPAQRKELANQLV--GQILPLSMQMY 741
+E L + S MTD+ F VIQ + + +L L +++ + +
Sbjct: 264 KRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQN 323
Query: 742 GCRVIQKALETIEIEQKAQLVREL-DGQVMRCV-RDQNGNHVIQKCIECIPPEKIGFIIS 799
VIQK + I ++ +V + + +R + D+ G V+Q IE + + + ++
Sbjct: 324 ANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLT 383
Query: 800 AFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVL 859
+ AA ++ R +QR++ ++ CQ LA ++Y NY+ QH++
Sbjct: 384 S-----AAQNLRE---RALQRLMTSVTNR--CQ-----------ELATNEYANYIIQHIV 422
Query: 860 QRGK-PLERSKIIRK-LSGHIVQLSQHKFASNVIEKCLAYGGPAE--RELIIEEILGH-- 913
+ R II K L +++ LSQ KFAS+V+EK + P E E++ E G+
Sbjct: 423 SNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHA-PLELLAEMMDEIFDGYIP 481
Query: 914 ----NEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
++ L MM QF NYVVQ + + ++ ++ + H + + K + +R
Sbjct: 482 HPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSR 541
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 234 (87.4 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 78/311 (25%), Positives = 153/311 (49%)
Query: 646 SGKGR-RFELSDI--TGHIVEFSADQHGSRFIQQKLENCSVD-EKASVFKEILPHAS--- 698
+G+ R R LS++ +G +++F+ D+ G +F+++ ++ +K +F++++
Sbjct: 174 NGEMRSRLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFL 233
Query: 699 KLMTDVFGNYVIQKF-------FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALE 751
KL T++FGNY +Q+ ++ + ++++L N + Q+ + + + CRVIQ +L+
Sbjct: 234 KLSTNIFGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQ 293
Query: 752 TIEIEQKAQLVREL--DGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIIS--AFCGQVAA 807
+++ +LV+ L D +++ DQN NHVIQK + IP + FI+ A +
Sbjct: 294 NMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQ 353
Query: 808 LSMHPYGCRVIQRVLEHC-ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE 866
+ YGCRV+Q ++E AD VD L + +++ + V R + L
Sbjct: 354 ICFDKYGCRVVQTIIEKLTADSIN----VD--LTSAAQHLRERALQRLMTSVTNRCQELA 407
Query: 867 RSKIIRKLSGHIVQLSQHK-FASNVIEKCLAYG--GPAEREL---IIEEILGHNEETLLT 920
++ + HIV + +IEKCL ++ + ++E+ H LL
Sbjct: 408 TNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPMELLA 467
Query: 921 MMKDQ-FANYV 930
M D+ F Y+
Sbjct: 468 EMMDEIFDGYM 478
Score = 145 (56.1 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 85/346 (24%), Positives = 156/346 (45%)
Query: 638 CNFLEELKSGK---GRRFELSD-ITGHIVEF---SADQHGSRFIQQ--KLENCSVDEKAS 688
C FLE+ G ++F+L + + G +F S + G+ F+Q+ + + D+
Sbjct: 202 CQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNI 261
Query: 689 VFKEILPH-ASKLMTDV----FGNYVIQKFFEYGSPAQRKELANQLV--GQILPLSMQMY 741
+E L + S MTD+ F VIQ + + +L L +++ + +
Sbjct: 262 KRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQN 321
Query: 742 GCRVIQKALETIEIEQKAQLVREL-DGQVMRCVR-DQNGNHVIQKCIECIPPEKIGFIIS 799
VIQK + I ++ +V + + +R + D+ G V+Q IE + + I ++
Sbjct: 322 ANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVDLT 381
Query: 800 AFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVL 859
+ AA + R +QR++ ++ CQ LA ++Y NY+ QH++
Sbjct: 382 S-----AAQHLRE---RALQRLMTSVTNR--CQ-----------ELATNEYANYIIQHIV 420
Query: 860 QRGK-PLERSKIIRK-LSGHIVQLSQHKFASNVIEKCLAYGGPAEREL-IIEEIL----- 911
+ R II K L +++ LSQ KFAS+V+EK + P E +++EI
Sbjct: 421 SNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHA-PMELLAEMMDEIFDGYMP 479
Query: 912 --GHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAH 955
G ++ L MM QF NYVVQ + + ++ ++ ++ H
Sbjct: 480 HPGTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGSYDH 525
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 234 (87.4 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 78/311 (25%), Positives = 153/311 (49%)
Query: 646 SGKGR-RFELSDI--TGHIVEFSADQHGSRFIQQKLENCSVD-EKASVFKEILPHAS--- 698
+G+ R R LS++ +G +++F+ D+ G +F+++ ++ +K +F++++
Sbjct: 174 NGEMRSRLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFL 233
Query: 699 KLMTDVFGNYVIQKF-------FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALE 751
KL T++FGNY +Q+ ++ + ++++L N + Q+ + + + CRVIQ +L+
Sbjct: 234 KLSTNIFGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQ 293
Query: 752 TIEIEQKAQLVREL--DGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIIS--AFCGQVAA 807
+++ +LV+ L D +++ DQN NHVIQK + IP + FI+ A +
Sbjct: 294 NMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQ 353
Query: 808 LSMHPYGCRVIQRVLEHC-ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE 866
+ YGCRV+Q ++E AD VD L + +++ + V R + L
Sbjct: 354 ICFDKYGCRVVQTIIEKLTADSIN----VD--LTSAAQHLRERALQRLMTSVTNRCQELA 407
Query: 867 RSKIIRKLSGHIVQLSQHK-FASNVIEKCLAYG--GPAEREL---IIEEILGHNEETLLT 920
++ + HIV + +IEKCL ++ + ++E+ H LL
Sbjct: 408 TNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPMELLA 467
Query: 921 MMKDQ-FANYV 930
M D+ F Y+
Sbjct: 468 EMMDEIFDGYM 478
Score = 145 (56.1 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 85/346 (24%), Positives = 156/346 (45%)
Query: 638 CNFLEELKSGK---GRRFELSD-ITGHIVEF---SADQHGSRFIQQ--KLENCSVDEKAS 688
C FLE+ G ++F+L + + G +F S + G+ F+Q+ + + D+
Sbjct: 202 CQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNI 261
Query: 689 VFKEILPH-ASKLMTDV----FGNYVIQKFFEYGSPAQRKELANQLV--GQILPLSMQMY 741
+E L + S MTD+ F VIQ + + +L L +++ + +
Sbjct: 262 KRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQN 321
Query: 742 GCRVIQKALETIEIEQKAQLVREL-DGQVMRCVR-DQNGNHVIQKCIECIPPEKIGFIIS 799
VIQK + I ++ +V + + +R + D+ G V+Q IE + + I ++
Sbjct: 322 ANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVDLT 381
Query: 800 AFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVL 859
+ AA + R +QR++ ++ CQ LA ++Y NY+ QH++
Sbjct: 382 S-----AAQHLRE---RALQRLMTSVTNR--CQ-----------ELATNEYANYIIQHIV 420
Query: 860 QRGK-PLERSKIIRK-LSGHIVQLSQHKFASNVIEKCLAYGGPAEREL-IIEEIL----- 911
+ R II K L +++ LSQ KFAS+V+EK + P E +++EI
Sbjct: 421 SNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHA-PMELLAEMMDEIFDGYMP 479
Query: 912 --GHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAH 955
G ++ L MM QF NYVVQ + + ++ ++ ++ H
Sbjct: 480 HPGTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGSYDH 525
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 232 (86.7 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 82/363 (22%), Positives = 170/363 (46%)
Query: 621 SGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLEN 680
+ W+ G +YN + + +E +G+G F ++ T + +S + + F+ K E
Sbjct: 187 NSWRSNEGC-TYNQDQAASSME---NGRGSYFSIA--TDRV--WSKELEKTIFVGTK-E- 236
Query: 681 CSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQR---KELANQLVGQILPLS 737
++D +F ++ +LM D FGN V++ S Q ++ + + + + +
Sbjct: 237 -TID---MIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVDVVTRHISKFVNIC 292
Query: 738 MQMYGCRVIQKALETIEIEQKAQLVRELDG---QVMRCVRDQNGNHVIQKCIECIPPE-- 792
G IQ L +I Q+ R +D ++ R+ N +VI C
Sbjct: 293 FNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYVILACFRMFTSSQC 352
Query: 793 -KIGFIISAFCGQVAALSMHPYGCRVIQRVLE-HCADKHQC-QFIVDEILDNVCALAQDQ 849
++ ++S C Q+A + GC ++Q+ + H+ Q ++ E++++ L +
Sbjct: 353 RRLLEVVSQHCYQIA---IDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNC 409
Query: 850 YGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEE 909
+GNYV Q+V++ E ++ KL + L+++K+ S+V++K L G + +LI+ +
Sbjct: 410 HGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRG-IDSKLIVVD 468
Query: 910 ILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVAR 969
+L +TLL D F NYV+Q + +S E + M+ I + +++ +G I+ +
Sbjct: 469 LL-RGIDTLLL---DPFGNYVIQTAWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEK 524
Query: 970 FEM 972
+
Sbjct: 525 LNI 527
Score = 140 (54.3 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 58/249 (23%), Positives = 112/249 (44%)
Query: 744 RVIQKALE-TIEIEQKAQLVRELDGQVMR-C--VRDQNGNHVIQKCIECIPPEKIGFIIS 799
RV K LE TI + K + DG ++ C + D GN V++ I E+I I+
Sbjct: 220 RVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVD 279
Query: 800 AFCGQVAA---LSMHPYGCRVIQRVLE--HCADKHQCQFIVDEILDNVCALAQDQYGNYV 854
++ + +P G IQ +L H +Q I+D I L ++ YV
Sbjct: 280 VVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYV 339
Query: 855 TQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAEREL---IIEEIL 911
+ + +++ +S H Q++ + ++++C E+ +I E++
Sbjct: 340 ILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVI 399
Query: 912 GHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRI-RTHAHVLKKYTYGKHIVARF 970
H L + + NYVVQ + EL ++ + ++++++ R +AH L + YG H+V +
Sbjct: 400 EH----ALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAH-LARNKYGSHVVQKL 454
Query: 971 EMLIGEENQ 979
L G +++
Sbjct: 455 LKLRGIDSK 463
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 222 (83.2 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 62/250 (24%), Positives = 124/250 (49%)
Query: 733 ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDG-QVMRCVRDQNGNHVIQKCIECIPP 791
++ + + + CRV+Q +++ ++ +LV ++ + DQ HV+QK ++ +P
Sbjct: 230 LIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKISSLDFLPLCTDQCAIHVLQKVVKLLPI 289
Query: 792 EKIGFIISAFC--GQVAALSMHPYGCRVIQRVLEHCAD--KHQC-----QFI---VDEIL 839
F + C + + YGCR++Q+ ++ +D K C Q + + +
Sbjct: 290 SAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTIDKLSDNPKLHCFNTRLQLLHGLMTSVA 349
Query: 840 DNVCALAQDQYGNYVTQHVLQRGKPLE--RSKIIRK-LSGHIVQLSQHKFASNVIEKCLA 896
N L+ +++ NYV Q+V++ +E R II K L +I+ +SQ K+AS+V+E
Sbjct: 350 RNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTIIEKCLLRNILSMSQDKYASHVVEGAFL 409
Query: 897 YGGPAERELIIEEIL-GH------NEETLLTMMKDQFANYVVQKIFE-----LSSESQQA 944
+ P +++EI G+ N + L ++ Q+ NYVVQ++ L + ++
Sbjct: 410 FAPPLLLSEMMDEIFDGYVKDQETNRDALDILLFHQYGNYVVQQMISICISALLGKEERK 469
Query: 945 MMLSRIRTHA 954
M+ S +R +A
Sbjct: 470 MVASEMRLYA 479
Score = 211 (79.3 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 55/242 (22%), Positives = 117/242 (48%)
Query: 654 LSDIT--GHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVF----GN 707
L D+ G +++F+ D+ G +F+++ +E V + L + T + GN
Sbjct: 144 LQDVVSNGSLIDFAMDRTGVKFLERHFPEDHDNEMHFVLFDKLTEQGAVFTSLCRSAAGN 203
Query: 708 YVIQKFFEYGSPAQRKELANQLVGQ-ILPLSMQMYGCRVIQKALETIEIEQKAQLVRELD 766
++IQKF E+ + +++ L ++ ++ + + + CRV+Q +++ ++ +LV ++
Sbjct: 204 FIIQKFVEHATLDEQERLVRKMCDNGLIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKIS 263
Query: 767 G-QVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFC--GQVAALSMHPYGCRVIQRVLE 823
+ DQ HV+QK ++ +P F + C + + YGCR++Q+ ++
Sbjct: 264 SLDFLPLCTDQCAIHVLQKVVKLLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTID 323
Query: 824 HCAD--KHQC-----QFI---VDEILDNVCALAQDQYGNYVTQHVLQRGKPLE--RSKII 871
+D K C Q + + + N L+ +++ NYV Q+V++ +E R II
Sbjct: 324 KLSDNPKLHCFNTRLQLLHGLMTSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTII 383
Query: 872 RK 873
K
Sbjct: 384 EK 385
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 209 (78.6 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 84/384 (21%), Positives = 167/384 (43%)
Query: 601 GTGLL--GGRNEMRFSPVSNRYSGWQGQR-GFESYNDPKICNFLEELKSGKGRRFELSDI 657
G G+L G N++ S +R S + R G+E YN + +G F+ +
Sbjct: 154 GNGMLNNGFLNDVPSSS-RDRVSDYYTNRFGYEGYN---------YWRGNEG--FDYNQC 201
Query: 658 TGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYG 717
F+ D+ S + + + + +++ ++ +LM D +G+ V+Q
Sbjct: 202 QASFSAFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRC 261
Query: 718 SPAQRKELAN---QLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVR 774
S Q +L + Q + Q + + + G IQ L I K Q+ R +D V+R V
Sbjct: 262 SSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVD--VVRTVA 319
Query: 775 DQ--NGNHVIQKCIECIP--PEKIGFIISAFCGQVAALSMHPYGCRVIQRVL--EHCADK 828
Q NH I + C P ++ +++ +GC ++Q + +
Sbjct: 320 LQLSKSNHAIFVILACFRLFPLHCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNL 379
Query: 829 HQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFAS 888
Q ++ E + N L + YGNYV Q++++ ++R+L G+ L+++K+ S
Sbjct: 380 EIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGS 439
Query: 889 NVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLS 948
+ ++K L R ++I+ L +TLL D F NYV+Q + +S + + M+
Sbjct: 440 HAVQKLLKLRWIDSRVIVID--LLREIDTLLL---DPFGNYVIQTAWFVSKDDVRRMLRY 494
Query: 949 RIRTHAHVLKKYTYGKHIVARFEM 972
I + +++ +G ++ + +
Sbjct: 495 HIERNIPMMRCNKFGNKVLEKLNI 518
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 186 (70.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 44/152 (28%), Positives = 81/152 (53%)
Query: 813 YGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQ-RGKPLERSKII 871
YGC + ++ D + ++D + +N L+ D YGN+V QHVL+ R R+ I
Sbjct: 166 YGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRN-IA 224
Query: 872 RKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVV 931
KL G+ V+LS K+ S ++E+ L G ++ ++L E L+ + + ++ N+VV
Sbjct: 225 DKLCGYCVELSFKKYGSYIVERLLE-AGDVPMATVVLDLLACKTEMLIRLARSEYGNFVV 283
Query: 932 QKIFELSSESQQAMM----LSRIRTHAHVLKK 959
K EL++E A + ++R+ + H+L +
Sbjct: 284 CKALELTNEILTADLFYGLVNRLMPYRHLLHR 315
Score = 146 (56.5 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 46/205 (22%), Positives = 92/205 (44%)
Query: 660 HIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSP 719
+ + + +++GS+ +Q KL S D F+ I+ +MTD + +YV +
Sbjct: 86 YFMVITTNKNGSKTLQ-KLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQ 144
Query: 720 AQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQ-KAQLVRELDGQVMRCVRDQNG 778
+R+ + +Q++ L+ YGC + + + ++ + QL+ + + D G
Sbjct: 145 DKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYG 204
Query: 779 NHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEI 838
N V+Q ++ I CG LS YG +++R+LE D ++D +
Sbjct: 205 NFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLE-AGDVPMATVVLDLL 263
Query: 839 L---DNVCALAQDQYGNYVTQHVLQ 860
+ + LA+ +YGN+V L+
Sbjct: 264 ACKTEMLIRLARSEYGNFVVCKALE 288
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 180 (68.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 56/247 (22%), Positives = 112/247 (45%)
Query: 672 RFIQQKLEN--CSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQL 729
R ++++++N C+ +E + L S L +D GN V+QK F+Y S ++ + ++
Sbjct: 751 RQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDYCSDPVKEMMLERI 810
Query: 730 VGQILPLSMQMYGCRVIQKALETIEIEQKAQLV-RELDGQVMRCVRDQNGNHVIQKCIEC 788
+ + + G QK ++ E + +L+ + L + DQ GN+V+Q C++
Sbjct: 811 APHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQTCLKF 870
Query: 789 IPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHC-ADKHQCQFIVDEILDNVCALAQ 847
P F+ A Q ++ YG R ++ LE + Q + I LA
Sbjct: 871 GAPMN-DFVFEAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYSVHLAM 929
Query: 848 DQYGNYVTQHVLQR-GKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAY--GGPAERE 904
+ G + ++++ P + R+ IV++ H+ A N + K ++ G A +
Sbjct: 930 NGNGTLLLTYLVENMNYPHIPILLTRRFVQDIVRVCTHRLAYNSLLKIISISQGDTACGD 989
Query: 905 LIIEEIL 911
L+++ IL
Sbjct: 990 LVVDAIL 996
Score = 111 (44.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 42/204 (20%), Positives = 86/204 (42%)
Query: 633 NDPKICNFLEELKSGKGRRFELSDIT----GHIVEFSADQHGSRFIQQKLENCSVDEKAS 688
N PK+ + + +G + E+ DI + + S+D G+ +Q+ + CS K
Sbjct: 746 NAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDYCSDPVKEM 805
Query: 689 VFKEILPHASKLMTDVFGNYVIQKFFEYGSP-AQRKELANQLVGQILPLSMQMYGCRVIQ 747
+ + I PH +++ G + QK + S AQ + +A L I L +G V+Q
Sbjct: 806 MLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQ 865
Query: 748 KALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIEC--IPPEKIGFIISAFCGQV 805
L+ + + Q + + G+ ++ C+E + E+ + +A
Sbjct: 866 TCLK-FGAPMNDFVFEAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYS 924
Query: 806 AALSMHPYGCRVIQRVLEHCADKH 829
L+M+ G ++ ++E+ H
Sbjct: 925 VHLAMNGNGTLLLTYLVENMNYPH 948
Score = 67 (28.6 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 57/240 (23%), Positives = 96/240 (40%)
Query: 60 SAPPNMEG-SF----LAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYG 114
S P N E +F I ++ ++ +SS L N N N+ + S R + + Y
Sbjct: 102 SVPENQEAMNFNEGPTGISSIASKNNSSITSKLQN-NSNLSVTSSANRGRTSSVSSSYDP 160
Query: 115 SNVNLNPRLPRHLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRS-PKH 173
S PR+ + + T + SS+ +V + S K S + P
Sbjct: 161 S-FPWGPRMSS-VSSGKQHLSSLSLHTHFNPSSSSTVSSDSLESSQQKAPSSSSTATPAS 218
Query: 174 FSDEMVDRKNGFCSG-NEAVKVAGQNRNLVDIKQEDFPRSS----SP-VYN-----QSHS 222
+ E++ K+ + A A N + +Q RS+ SP V+ +
Sbjct: 219 AASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNTPP 278
Query: 223 FGY--SDSSSLRDPSVISSN--GVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISS 278
FGY + SS+L + S SS+ G+ T A + G S D+S A +S ++ + SS
Sbjct: 279 FGYPPTTSSALPNASGSSSSFFGLPTAVSA-SAGTSFS-DISPAAPKASLENNIASNASS 336
Score = 54 (24.1 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 33/182 (18%), Positives = 63/182 (34%)
Query: 228 SSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTS 287
S SL + SSN + ++ + S++++S ++ + WT+T+ + P +
Sbjct: 51 SGSLNGTTNPSSNFNDSNRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGLSVPENQEAM 110
Query: 288 NDTDIWTKDEVLXXXXXXXXXXXXXXNMKDFNTGHSNLGNQKNQAQLNVHXXXXXXXXXE 347
N + T + N T +N G + + +
Sbjct: 111 NFNEGPTGISSIASKNNSSITSKLQNNSNLSVTSSANRGRTSSVSS-SYDPSFPWGPRMS 169
Query: 348 NAHSQVSSLGLIGTHIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASPNPFY 407
+ S L + H H PS ST ++SS P +S A ++ +
Sbjct: 170 SVSSGKQHLSSLSLHT-----HFNPSSSSTVSSDSLESSQQKAPSSSSTATPASAASEII 224
Query: 408 SN 409
SN
Sbjct: 225 SN 226
Score = 52 (23.4 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 55 PNRSGSAPPNMEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCL 110
P + SA PN GS + L S+S+G + ++ + + E + +N + L
Sbjct: 282 PPTTSSALPNASGSSSSFFGLPTAVSASAGTSFSDISPAAPKASLENNIASNASSL 337
Score = 47 (21.6 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 228 SSSLRDPSVISSNGVSTTTGAHNTGVSSK---VDVSTAYNVSSSSHDWTATISSTPPTEE 284
S SL + S SS+ + HN VSS ++T N +S A IS+ +E
Sbjct: 509 SGSLANSSEHSSSPRLRGSPIHNQPVSSSKSTASLNTNNNGLRASTPEMANISTRSSSE- 567
Query: 285 VTSNDTDIW 293
SN+T+ W
Sbjct: 568 --SNNTNSW 574
Score = 46 (21.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 33/143 (23%), Positives = 57/143 (39%)
Query: 135 GNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNGFC--SGNEAV 192
G+ G T+ ++ N S + S ++ S E + K+ ++ G EA+
Sbjct: 52 GSLNGTTNPSSNFNDS-NRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGLSVPENQEAM 110
Query: 193 KVAGQNRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTG 252
+ I ++ +S + N S+ S ++ R SV SS S G +
Sbjct: 111 NFNEGPTGISSIASKNNSSITSKLQNNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSS 170
Query: 253 VSS------KVDVSTAYNVSSSS 269
VSS + + T +N SSSS
Sbjct: 171 VSSGKQHLSSLSLHTHFNPSSSS 193
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 234 PSVISSNGVSTTTGAHNTGVSS 255
PS +S+ V+TT A+ T VSS
Sbjct: 600 PSGVSATTVATTFSAYGT-VSS 620
Score = 38 (18.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 212 SSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHD 271
+++P N + S + SSSLR +S+N + T N +S V +S N + + +
Sbjct: 57 TTNPSSNFNDSNRSNISSSLRSEMEMSNNLLKNT---QNDTWTSTVGLSVPENQEAMNFN 113
Query: 272 WTAT-ISS 278
T ISS
Sbjct: 114 EGPTGISS 121
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 189 (71.6 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 60/247 (24%), Positives = 111/247 (44%)
Query: 684 DEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGC 743
+E + + +L ++L +D GN V+QKFFEY S ++ + ++ + + + G
Sbjct: 183 EEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNGT 242
Query: 744 RVIQKALETIEIEQKAQL-VRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFC 802
QK ++ E++ L V+ L DQ GN+V Q C+ P+ F+
Sbjct: 243 WAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLRFKYPKNT-FLFEVMA 301
Query: 803 GQVAALSMHPYGCRVIQRVLEH-CADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQR 861
+ +G R I+ LE+ A Q +V I+ N LA + G + +L
Sbjct: 302 RHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINSHLLATNSNGMLLLTWLLDN 361
Query: 862 GKPLERSKIIR-KLSGHIVQLSQHKFASNVIEKCLAYGG-PAERELIIEEILGHNEETLL 919
R +++ L+ H+ HK AS +I K + P R L+++ + ++ +L
Sbjct: 362 SFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEPESRNLLLKNLFFSEKDNVL 421
Query: 920 T-MMKDQ 925
T +++DQ
Sbjct: 422 TYILQDQ 428
Score = 145 (56.1 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 53/275 (19%), Positives = 119/275 (43%)
Query: 718 SPAQRKELANQLVGQILPLSMQMYGC---RVIQKALET-IEIEQKAQLV-RELDGQVMRC 772
S + ++A +++ + L + + R I+K +++ +++ +++ R + V
Sbjct: 140 SAIENNKVATEILPPVETLRSRQFEASKLREIRKNIDSGFYTQEEIEVIARSMLDDVAEL 199
Query: 773 VRDQNGNHVIQKCIE-CIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQC 831
D GN V+QK E C P K ++ +AA+ +H G Q++++ + + Q
Sbjct: 200 SSDYLGNTVVQKFFEYCSDPIKEA-MLERIAPYLAAIGIHKNGTWAAQKIIDVASTEKQM 258
Query: 832 QFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVI 891
IV + L DQ+GNYV Q L+ P + + + ++ H ++ Q +F + I
Sbjct: 259 DLIVKHLRPYTALLYFDQFGNYVAQCCLRFKYP-KNTFLFEVMARHCCEIGQSRFGARAI 317
Query: 892 EKCLAYGGPA--ERELIIEEILGHNEETLLTMMKDQFA-NYVVQKIFELSSESQQAMMLS 948
CL ++ L++ I+ N L T +++ F ++ ++
Sbjct: 318 RACLENENATFEQQALVVASII-INSHLLATNSNGMLLLTWLLDNSF---FRNRHRLLAI 373
Query: 949 RIRTHAHVLKKYTYGKHIVARFEMLIGEENQTSES 983
+ TH H + ++ F+++ ++ S +
Sbjct: 374 HLATHLHTTCTHKLASTLI--FKLINNKQEPESRN 406
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 196 (74.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 63/261 (24%), Positives = 116/261 (44%)
Query: 672 RFIQQKLEN--CSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQL 729
R I+++++N CS+ E +LP ++L +D GN V+QK FEY S ++ + +
Sbjct: 658 RDIRKRIDNGNCSIQEIEETAIAMLPEIAELASDYLGNTVVQKLFEYSSEPIKERILVPI 717
Query: 730 VGQILPLSMQMYGCRVIQKALETIEIE-QKAQLVRELDGQVMRCVRDQNGNHVIQKCIEC 788
+ + + G QK ++ + Q +V L + DQ GN+V+Q C+
Sbjct: 718 APHLGEIGVHKNGTWAAQKIIDVAKTPAQMRMIVDALRPYTVPLFLDQYGNYVLQCCLRF 777
Query: 789 IPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLE-HCADKHQCQFIVDEILDNVCALAQ 847
P F+ ++ ++ +G R ++ LE H A K Q + + I + LA
Sbjct: 778 GSPYN-DFVFETMLSRMWEIAQGRFGARAMRACLESHHATKDQQRMLAAAIALHSVQLAT 836
Query: 848 DQYGNYVTQHVLQRGK-PLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGG-PAEREL 905
+ G + L P R+ + +L H+V L HK A + K + P R +
Sbjct: 837 NANGALLLTWFLDTCTFPHRRTVLAPRLVPHLVHLCTHKVAYLTVLKVINQRNEPEARNI 896
Query: 906 IIEEIL-GHNEETLLTMMKDQ 925
+++ + +E L ++ DQ
Sbjct: 897 VLKALFFSPGDEVLEKILSDQ 917
Score = 40 (19.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 376 STAVQPVVQSSGF--TPPLYASAAAYMASPNPFYSNVQA 412
+T +P +++G PP +S Y+A+P+ ++ A
Sbjct: 392 ATVNRPRARTAGILEAPPQRSSIRNYLATPSRLENSFSA 430
>WB|WBGene00004240 [details] [associations]
symbol:puf-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000016078 EMBL:FO081656 PIR:T33752 RefSeq:NP_500301.1
UniGene:Cel.28747 ProteinModelPortal:Q8I723 SMR:Q8I723
EnsemblMetazoa:M4.2 GeneID:191754 KEGG:cel:CELE_M4.2 UCSC:M4.2
CTD:191754 WormBase:M4.2 InParanoid:Q8I723 NextBio:950224
Uniprot:Q8I723
Length = 420
Score = 179 (68.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 52/157 (33%), Positives = 85/157 (54%)
Query: 747 QKAL-ETIEIEQKAQLVRELDGQVMR--CVRDQNGNHVIQKCIECIPPEKIGFIISAFCG 803
QK + E + I ++L EL G + C+ DQNGNHVIQ+ ++ +PP F++ F
Sbjct: 224 QKIIVEYLAIVLASRLASELRGVDLTHACI-DQNGNHVIQQLLKTLPPSSWQFLVEFFSR 282
Query: 804 QVAALSM--HPYGCRVIQRVLEHCADKHQC---QFIVDEILDNVCALAQDQYGNYVTQHV 858
+ + Y CRVIQ LE + + Q + +V I+ N LA +++ NYV +HV
Sbjct: 283 DTNFVEVCEDKYVCRVIQSTLETLSKREQLVALRRLVGVIIRNCGQLASNEFANYVVRHV 342
Query: 859 LQ---RGKPLERSKIIRK-LSGHIVQLSQHKFASNVI 891
++ + R II K L +++ +SQ K+AS++I
Sbjct: 343 IKCDDAEMTIYRDVIIEKCLLQNLLSMSQEKYASHMI 379
Score = 38 (18.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 551 QHYRSGETEN-PSTSKVTVSPYH 572
QH + N P ++K T + YH
Sbjct: 54 QHPLGSKCPNAPKSNKATATSYH 76
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 171 (65.3 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 61/265 (23%), Positives = 122/265 (46%)
Query: 689 VFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ---ILPLSMQMYGCRV 745
+F ++ H +LM D +G+ V +K E + Q + + ++ + + L + +G
Sbjct: 183 IFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHA 242
Query: 746 IQKALETI-EIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ 804
IQ + ++ EQ ++ + L + +D + VI C P +++
Sbjct: 243 IQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQN 302
Query: 805 VAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYG----------NYV 854
+++ GC ++++++ + + ++ EI+ L + YG NYV
Sbjct: 303 CYQVAIDQNGCCMLKKLIRQ-SSRELRDPLIKEIISIAVRLCGNCYGTLTPKSLLVRNYV 361
Query: 855 TQHVLQRGKPLERSKIIRK-LSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGH 913
Q++L R K E + + K L G+ VQLS K+ S+V++KCL + R II E+L
Sbjct: 362 VQYLL-RLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSRR-IIAELLSD 419
Query: 914 NEETLLTMMKDQFANYVVQKIFELS 938
+ L+ D + +YV+Q + +S
Sbjct: 420 IDSLLV----DPYGDYVIQTAWIVS 440
Score = 160 (61.4 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 53/206 (25%), Positives = 92/206 (44%)
Query: 662 VEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMT-DVFGNYVIQKFFEYGSPA 720
V HG+ IQ + + +E+ S F E L + S L+T DV + VI F SP+
Sbjct: 231 VRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPS 290
Query: 721 QRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNG-- 778
+ L +V +++ GC +++K + E + L++E+ +R + G
Sbjct: 291 HTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTL 350
Query: 779 --------NHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQ 830
N+V+Q + E + G LS YG V+Q+ LE + +
Sbjct: 351 TPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLE--SREFS 408
Query: 831 CQFIVDEILDNVCALAQDQYGNYVTQ 856
+ I+ E+L ++ +L D YG+YV Q
Sbjct: 409 SRRIIAELLSDIDSLLVDPYGDYVIQ 434
>MGI|MGI:106253 [details] [associations]
symbol:D19Bwg1357e "DNA segment, Chr 19, Brigham & Women's
Genetics 1357 expressed" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:106253 GO:GO:0005783
SUPFAM:SSF48371 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844
OMA:RKDCDKE OrthoDB:EOG4X3H13 EMBL:AK050829 EMBL:AK088081
EMBL:AK141893 EMBL:AK172872 IPI:IPI00222675 RefSeq:NP_803425.1
UniGene:Mm.261027 ProteinModelPortal:Q8BKS9 STRING:Q8BKS9
PhosphoSite:Q8BKS9 PaxDb:Q8BKS9 PRIDE:Q8BKS9
Ensembl:ENSMUST00000076219 GeneID:52874 KEGG:mmu:52874
UCSC:uc008hby.1 CTD:52874 GeneTree:ENSGT00390000015757
HOGENOM:HOG000237322 InParanoid:Q8BKS9 NextBio:309667 Bgee:Q8BKS9
Genevestigator:Q8BKS9 GermOnline:ENSMUSG00000041360 Uniprot:Q8BKS9
Length = 647
Score = 171 (65.3 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 76/352 (21%), Positives = 160/352 (45%)
Query: 635 PKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEIL 694
PK +F ++ K K R +LSD T + + A +H +++K +C +++ + ++
Sbjct: 107 PKWDDFKKKKKELKQSR-QLSDKTNYDIVVRA-KHIWESLRRK--DCDKEKRVKLMSDLQ 162
Query: 695 PHAS-KLMTDVFGN---YVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL 750
K+ T F + VIQ F +YG+ QRK+ +L G ++ LS Y +++K L
Sbjct: 163 KLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFL 222
Query: 751 ETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI-ECIPPEKIGFIISAFCGQVAAL- 808
Q A+++R G V + +R + +++ + E+ + G L
Sbjct: 223 MYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLY 282
Query: 809 --SMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQR----- 861
+ HP + +VLE + + I+DE+ + +AQ + V +H L
Sbjct: 283 KSADHP----TLDKVLE--LQPAKLELIMDEMKQILTPMAQKEA---VIKHSLVHKVFLD 333
Query: 862 ----GKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEET 917
P RS++I + +V L+ + V CL +G P +R++I++ + + E+
Sbjct: 334 FFTYAPPKPRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEK- 392
Query: 918 LLTMMKDQFANYVVQKIFELSSESQ--QAMMLSRIRTHAHVLKKYTYGKHIV 967
+ Q+++ V+ F+ +++ + +++S I + + YG+ ++
Sbjct: 393 ---VANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVL 441
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 163 (62.4 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 55/279 (19%), Positives = 120/279 (43%)
Query: 696 HAS--KLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ---ILPLSMQMYGCRVIQKAL 750
HA+ LMTD G ++ + + +A+ L + + +G R +QK L
Sbjct: 42 HAALFNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL 101
Query: 751 ETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSM 810
+ + A + + + D+ ++V + + + L+
Sbjct: 102 GKSD-DVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLAC 160
Query: 811 HPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKI 870
+GC + ++ D + +++ ++ N L+ D GN+V QHVL I
Sbjct: 161 DQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNI 220
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
L G ++LS K+ S ++EK L +++ E+LG + + L+ + +++F N+V
Sbjct: 221 AVNLYGQCIELSFKKYGSYIVEKLLEV--EESMVVVVVELLGCDGDRLMRLARNEFGNFV 278
Query: 931 VQKIFELSSESQQAM---MLSRIRTHAHVLKKYTYGKHI 966
V K + E + + ++ ++ H+L++ ++G +I
Sbjct: 279 VVKALRFTKEMRMDLFWGLVQKLMPFIHLLRR-SHGNNI 316
Score = 149 (57.5 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 56/249 (22%), Positives = 109/249 (43%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKF 713
L+ + + + + GSR +Q KL S D A IL + TD + +YV +
Sbjct: 77 LTSDSDYFMSIVTTKFGSRRVQ-KLLGKSDDVDAFFCAAILRRFLHITTDKYASYVTIRA 135
Query: 714 FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL-ETIEIEQKAQLVRELDGQVMRC 772
+K L +++ L L+ +GC + + + + + QL+ + +R
Sbjct: 136 MVVFDKVMKKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRL 195
Query: 773 VRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQ 832
D +GN V+Q + I I GQ LS YG +++++LE +
Sbjct: 196 SNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEV---EESMV 252
Query: 833 FIVDEIL----DNVCALAQDQYGNYVTQHVLQRGKPLERSK---IIRKLSG--HIVQLSQ 883
+V E+L D + LA++++GN+V L+ K + +++KL H+++ S
Sbjct: 253 VVVVELLGCDGDRLMRLARNEFGNFVVVKALRFTKEMRMDLFWGLVQKLMPFIHLLRRSH 312
Query: 884 HKFASNVIE 892
+N+++
Sbjct: 313 GNNIANILD 321
>RGD|1564753 [details] [associations]
symbol:LOC499339 "hypothetical protein LOC499339" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1564753 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:BC092579 EMBL:BC098744 IPI:IPI00563669 RefSeq:NP_001020207.1
UniGene:Rn.127943 UniGene:Rn.52964 ProteinModelPortal:Q562C7
STRING:Q562C7 PhosphoSite:Q562C7 PRIDE:Q562C7
Ensembl:ENSRNOT00000033724 GeneID:499339 KEGG:rno:499339
InParanoid:Q562C7 NextBio:702600 Genevestigator:Q562C7
GermOnline:ENSRNOG00000012574 Uniprot:Q562C7
Length = 647
Score = 164 (62.8 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 76/352 (21%), Positives = 159/352 (45%)
Query: 635 PKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEIL 694
PK +F ++ K K R +LSD T + V A +H +++K +C +++ + ++
Sbjct: 107 PKWDDFKKKKKELKQNR-QLSDKTNYDVVVRA-KHIWESLRRK--DCDKEKRVKLMSDLQ 162
Query: 695 PHAS-KLMTDVFGN---YVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL 750
K+ T F + VIQ +YGS QRK +L G ++ LS Y +++K L
Sbjct: 163 KLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFL 222
Query: 751 ETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI-ECIPPEKIGFIISAFCGQVAAL- 808
Q A+++R G V + +R + +++ + E+ + G L
Sbjct: 223 MYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLY 282
Query: 809 --SMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQR----- 861
+ HP +++VLE + + I+DE+ + +AQ + V +H L
Sbjct: 283 KSADHP----TLEKVLE--VQPGKLELILDEMKQILTPMAQKEA---VIKHSLVHKVFLD 333
Query: 862 ----GKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEET 917
P RS++I + +V L+ + V CL +G P +R++I++ + + E+
Sbjct: 334 FFTYAPPKLRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEK- 392
Query: 918 LLTMMKDQFANYVVQKIFELSSESQ--QAMMLSRIRTHAHVLKKYTYGKHIV 967
+ Q+++ V+ F+ +++ + +++S + + + YG+ ++
Sbjct: 393 ---IANGQYSHLVLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVL 441
>UNIPROTKB|Q15397 [details] [associations]
symbol:KIAA0020 "Pumilio domain-containing protein
KIAA0020" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:CH471071 EMBL:AK292169 EMBL:AL354723 EMBL:AL589675
EMBL:BC016137 EMBL:D13645 EMBL:AF490254 EMBL:CR456957 EMBL:AY047588
EMBL:AY047589 EMBL:AY047590 IPI:IPI00791325 RefSeq:NP_055693.4
UniGene:Hs.493309 ProteinModelPortal:Q15397 IntAct:Q15397
MINT:MINT-1404790 STRING:Q15397 PhosphoSite:Q15397 DMDM:81175177
SWISS-2DPAGE:Q15397 PaxDb:Q15397 PRIDE:Q15397 DNASU:9933
Ensembl:ENST00000397885 GeneID:9933 KEGG:hsa:9933 UCSC:uc003zhp.1
CTD:9933 GeneCards:GC09M002720 HGNC:HGNC:29676 HPA:HPA002353
MIM:609960 neXtProt:NX_Q15397 PharmGKB:PA134895115 eggNOG:NOG273657
HOVERGEN:HBG052166 InParanoid:Q15397 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 ChiTaRS:KIAA0020 GenomeRNAi:9933 NextBio:37470
Bgee:Q15397 CleanEx:HS_KIAA0020 Genevestigator:Q15397
GermOnline:ENSG00000080608 Uniprot:Q15397
Length = 648
Score = 163 (62.4 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 79/376 (21%), Positives = 168/376 (44%)
Query: 612 RFSPVS--NRYSGWQ--GQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSAD 667
+F P + N+ +Q G+ + PK +F ++ K K R +LSD T + + A
Sbjct: 81 KFQPANKFNKKRKFQPDGRSDESAAKKPKWDDFKKKKKELKQSR-QLSDKTNYDIVVRAK 139
Query: 668 QHGSRFIQQKLENCSVDEKASVFKEILPHAS-KLMTDVFGN---YVIQKFFEYGSPAQRK 723
Q +++K +C +++ + ++ K+ T F + VIQ + +YG+ QRK
Sbjct: 140 QMWE-ILRRK--DCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRK 196
Query: 724 ELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQ 783
+ +L ++ LS Y +++K L Q A+++R G V + +R + +++
Sbjct: 197 QAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVE 256
Query: 784 KCI-ECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNV 842
+ E+ + G L R + +VLE +K + I+DE+ +
Sbjct: 257 YAYNDKAILEQRNMLTEELYGNTFQLYKSA-DHRTLDKVLEVQPEK--LELIMDEMKQIL 313
Query: 843 CALAQDQYGNYVTQHVLQR---------GKPLERSKIIRKLSGHIVQLSQHKFASNVIEK 893
+AQ + V +H L P RS++I + +V L+ + V
Sbjct: 314 TPMAQKEA---VIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHDGARVAMH 370
Query: 894 CLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQ--QAMMLSRIR 951
CL +G P +R++I++ + + E+ + Q+++ V+ F+ +++ + +++S I
Sbjct: 371 CLWHGTPKDRKVIVKTMKTYVEK----VANGQYSHLVLLAAFDCIDDTKLVKQIIISEII 426
Query: 952 THAHVLKKYTYGKHIV 967
+ + YG+ ++
Sbjct: 427 SSLPSIVNDKYGRKVL 442
>UNIPROTKB|F1SJG9 [details] [associations]
symbol:LOC100152831 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:CU062572
Ensembl:ENSSSCT00000005761 Uniprot:F1SJG9
Length = 647
Score = 162 (62.1 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 73/349 (20%), Positives = 156/349 (44%)
Query: 635 PKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEIL 694
PK F ++ K K R +LSD + + A Q +++K +C+ +++ + ++
Sbjct: 107 PKWDEFKKKKKELKQSR-QLSDKANYDIVVRAKQIWE-ILRRK--DCNKEKRVKLMSDLQ 162
Query: 695 PHAS-KLMTDVFGN---YVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL 750
K+ T F + VIQ + +YG+ QRK+ +L G ++ LS Y +++K L
Sbjct: 163 KLIQGKIKTIAFAHDSTRVIQCYIQYGTEEQRKQAFEELRGDLVELSKAKYSRNIVKKFL 222
Query: 751 ETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI-ECIPPEKIGFIISAFCGQVAALS 809
Q A+++R G V + +R + +++ + E+ + G L
Sbjct: 223 MYGNKAQIAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLY 282
Query: 810 MHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVL---------Q 860
C + +VLE +K + I+DE+ + +AQ + V +H L
Sbjct: 283 KSA-DCPTLDKVLEVQPEK--LELIMDEMKQILTPMAQKEA---VIKHSLVHKVFLDFFT 336
Query: 861 RGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLT 920
P RS++I + ++ L+ + V CL +G P +R++I++ + + E+
Sbjct: 337 HAPPKLRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEK---- 392
Query: 921 MMKDQFANYVVQKIFELSSESQ--QAMMLSRIRTHAHVLKKYTYGKHIV 967
+ Q+++ V+ F+ +++ + +++S I + YG+ ++
Sbjct: 393 VANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVL 441
>UNIPROTKB|H0YDQ6 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957 ChiTaRS:PUM1
Ensembl:ENST00000530669 Bgee:H0YDQ6 Uniprot:H0YDQ6
Length = 76
Score = 136 (52.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 30/52 (57%), Positives = 35/52 (67%)
Query: 796 FIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQ 847
FII AF GQV ALS HPYGCRVIQR+LEHC Q I++E+ + L Q
Sbjct: 1 FIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD-QTLPILEELHQHTEQLVQ 51
>ZFIN|ZDB-GENE-030131-9808 [details] [associations]
symbol:si:ch211-241o7.5 "si:ch211-241o7.5"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
ZFIN:ZDB-GENE-030131-9808 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000015757
EMBL:CR628386 IPI:IPI00799550 Ensembl:ENSDART00000127277
ArrayExpress:E9QJ83 Bgee:E9QJ83 Uniprot:E9QJ83
Length = 601
Score = 158 (60.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 58/247 (23%), Positives = 104/247 (42%)
Query: 653 ELSDITGHIVEFSADQHGS-RFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQ 711
EL D+ ++ A H S R +Q ++ S ++ VF E+ H +L + +++
Sbjct: 144 ELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSKSKYARNIVK 203
Query: 712 KFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEI-EQKAQLVRELDGQVM 770
KF YGS Q E+ G++ + V++ A I Q+ L EL G
Sbjct: 204 KFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLMLTEELYGNTF 263
Query: 771 RCVRDQNGNHVIQKCIECIPPEKIGFIISAF------CGQVAALSMHPYGCRVIQRVLEH 824
++ + ++K +E P K+ I+ Q A+ H +V EH
Sbjct: 264 TVLKS-SVCPTLEKVLEA-NPGKLESILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFEH 321
Query: 825 CADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQH 884
DK + + I + I + V +A G VT H L G +R I++ + +I + +
Sbjct: 322 APDKQRTEMI-ESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKSYIAKFAMG 380
Query: 885 KFASNVI 891
++A V+
Sbjct: 381 EYAHLVL 387
Score = 143 (55.4 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 58/306 (18%), Positives = 141/306 (46%)
Query: 679 ENCSVDEKASVFKEILPHAS-KLMTDVFGN---YVIQKFFEYGSPAQRKELANQLVGQIL 734
++C ++ + KE+ K+ T F + V+Q F ++GS QRKE+ ++L I+
Sbjct: 131 KDCDKQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIV 190
Query: 735 PLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI--ECIPPE 792
LS Y +++K L EQ +++ G+V + +R + V++ + I +
Sbjct: 191 ELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQ 250
Query: 793 KIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGN 852
++ + G + + C +++VLE A+ + + I+DE+ + +AQ +
Sbjct: 251 RL-MLTEELYGNTFTV-LKSSVCPTLEKVLE--ANPGKLESILDEMKQILTPMAQKEA-- 304
Query: 853 YVTQHVL---------QRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAER 903
V +H L + +R+++I + +V ++ + V CL +G +R
Sbjct: 305 -VIKHSLVHKVFLDFFEHAPDKQRTEMIESIREAVVYMAHTHDGARVTMHCLWHGTTKDR 363
Query: 904 ELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQ--QAMMLSRIRTHAHVLKKYT 961
++I++ + + + ++A+ V+ F+ +++ + +++S + + +
Sbjct: 364 KVIVKTMKSY----IAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSEIISNK 419
Query: 962 YGKHIV 967
+GK ++
Sbjct: 420 HGKKVL 425
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 157 (60.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 50/205 (24%), Positives = 90/205 (43%)
Query: 765 LDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEH 824
+D + D+ G +I I + K + L+ GC + VL+
Sbjct: 294 VDTNFFLLMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQE 353
Query: 825 CADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQH 884
++ I + + +N L+ D YG +V Q++L P+ + I +L G +L+
Sbjct: 354 IRGIYR-DLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAME 412
Query: 885 KFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQA 944
+ S V+EKCL R+ ++EE G+ +E + M D+F N+VVQ + E +
Sbjct: 413 RQGSYVVEKCLK--SDFARDQVLEEFRGNAKEWV-RMTTDKFGNFVVQSALRVMKEKEMR 469
Query: 945 MMLSRIRTHAHVLKKYTYGKHIVAR 969
+L R L+ + +GK + R
Sbjct: 470 PLL---REFVEKLRPH-FGKMEIGR 490
Score = 47 (21.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 347 ENAHSQVSSLGLIGT-HIGMDQFHHGPSRPSTAVQPVVQSSGFTPPLYASAAAYMASP 403
E++++ +L + HI F+ P PS+ QP SS ++ + SP
Sbjct: 148 ESSNNNYPNLNVYNVGHISAASFNAPPFTPSSLTQPDDSSSRYSGKPFPPPPLSFVSP 205
>UNIPROTKB|A2VDN9 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 CTD:9933
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:DAAA02022736 EMBL:BC133332 EMBL:BT030563 IPI:IPI00693374
RefSeq:NP_001091499.1 UniGene:Bt.24626 STRING:A2VDN9
Ensembl:ENSBTAT00000017765 GeneID:514957 KEGG:bta:514957
InParanoid:A2VDN9 NextBio:20871591 Uniprot:A2VDN9
Length = 647
Score = 157 (60.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 75/352 (21%), Positives = 158/352 (44%)
Query: 635 PKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEIL 694
PK F ++ K K R +LSD T + + A Q +++K +C +++ + ++
Sbjct: 107 PKWDEFKKKKKELKQSR-QLSDKTNYDIVIRAKQIWE-ILRRK--DCDKEKRVKLMSDLQ 162
Query: 695 PHAS-KLMTDVFGN---YVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL 750
K+ T F + VIQ + ++G+ QRK+ +L G ++ LS Y +++K L
Sbjct: 163 KLIQGKIKTIAFAHDSTRVIQCYIQFGNEEQRKQAFEELRGDLVELSKAKYSRNIVKKFL 222
Query: 751 ETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI-ECIPPEKIGFIISAFCGQVAAL- 808
Q A+++R G V + +R + +++ + E+ + G L
Sbjct: 223 MYGSKAQIAEIIRSFKGHVRKLLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLY 282
Query: 809 --SMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQR----- 861
+ HP + +VLE +K + I+DE+ + +AQ + V +H L
Sbjct: 283 KSADHP----TLDKVLEVQPEK--LELIMDEMKQILTPMAQKEA---VIKHSLVHKVFLD 333
Query: 862 ----GKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEET 917
P RS++I + +V L+ + V CL +G P +R++I++ + + E+
Sbjct: 334 FFTYAPPKLRSEMIEAIREAVVYLAHTHDGARVAMYCLWHGTPKDRKVIVKTMKTYIEK- 392
Query: 918 LLTMMKDQFANYVVQKIFELSSESQ--QAMMLSRIRTHAHVLKKYTYGKHIV 967
+ Q+++ V+ F+ +++ + +++S I + YG+ ++
Sbjct: 393 ---VANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVL 441
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 54/279 (19%), Positives = 118/279 (42%)
Query: 696 HAS--KLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQ---ILPLSMQMYGCRVIQKAL 750
HA+ LMTD G ++ + + +A+ L + + +G R +QK L
Sbjct: 42 HAALFNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL 101
Query: 751 ETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSM 810
+ + A + + + D+ ++V + + + L+
Sbjct: 102 GKSD-DVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLAC 160
Query: 811 HPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKI 870
+GC + ++ D + +++ + N L+ D GN+V QHVL I
Sbjct: 161 DQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNI 220
Query: 871 IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
L G ++LS K+ S ++EK L +++ E+LG + + L+ + +++F N+V
Sbjct: 221 AVNLYGQCIELSFKKYGSYIVEKLLEV--EESMVVVVVELLGCDGDRLMRLARNEFGNFV 278
Query: 931 VQKIFELSSESQQAM---MLSRIRTHAHVLKKYTYGKHI 966
V K + S+ + ++ ++ +L++ ++G +I
Sbjct: 279 VVKALRFTKMSRMDLFWGLVQKLMPFIRLLRR-SHGSNI 316
Score = 145 (56.1 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 58/246 (23%), Positives = 107/246 (43%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKF 713
L+ + + + + GSR +Q KL S D A IL + TD + +YV +
Sbjct: 77 LTSDSDYFMSIVTTKFGSRRVQ-KLLGKSDDVDAFFCAAILRRFLHITTDKYASYVTIRA 135
Query: 714 FEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL-ETIEIEQKAQLVRELDGQVMRC 772
+K L +++ L L+ +GC + + + + + QL+ + +R
Sbjct: 136 MVVFDKVMKKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRL 195
Query: 773 VRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQ 832
D +GN V+Q + I I GQ LS YG +++++LE +
Sbjct: 196 SNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEV---EESMV 252
Query: 833 FIVDEIL----DNVCALAQDQYGNYVTQHVLQRGKPLERSKI----IRKLSGHIVQLSQH 884
+V E+L D + LA++++GN+V L+ K + R + ++KL I +L +
Sbjct: 253 VVVVELLGCDGDRLMRLARNEFGNFVVVKALRFTK-MSRMDLFWGLVQKLMPFI-RLLRR 310
Query: 885 KFASNV 890
SN+
Sbjct: 311 SHGSNI 316
>SGD|S000006246 [details] [associations]
symbol:PUF2 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000006246
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:Z71255
EMBL:BK006949 EMBL:Z49219 GO:GO:0000288 EMBL:Z68111 eggNOG:COG5099
EMBL:Z73616 GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136
OrthoDB:EOG4MWCFG PIR:S54067 RefSeq:NP_015367.1
ProteinModelPortal:Q12221 SMR:Q12221 IntAct:Q12221
MINT:MINT-4505998 STRING:Q12221 PaxDb:Q12221 EnsemblFungi:YPR042C
GeneID:856155 KEGG:sce:YPR042C CYGD:YPR042c NextBio:981289
Genevestigator:Q12221 GermOnline:YPR042C Uniprot:Q12221
Length = 1075
Score = 149 (57.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 45/148 (30%), Positives = 71/148 (47%)
Query: 749 ALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQ-VAA 807
+L TIE+EQ A ++ LD Q+ D GN VIQK E I I+ C + + +
Sbjct: 564 SLSTIEMEQLAIVM--LD-QLPELSSDYLGNTVIQKLFEN-SSNIIRDIMLRKCNKYLTS 619
Query: 808 LSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLER 867
+ +H G V Q++++ Q + + D L DQ+GNYV Q +L+ G P
Sbjct: 620 MGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGFPWN- 678
Query: 868 SKIIRKLSGHIVQLSQHKFASNVIEKCL 895
S I + H + Q+++ S + CL
Sbjct: 679 SFIFESVLSHFWTIVQNRYGSRAVRACL 706
Score = 58 (25.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 210 PRSSSPVYNQSHSFG---YSDSSSLRDPSVISSNGVSTTTGAHNTGVSSKVDVSTAYNV- 265
P SS+P S ++ SDS ++ P +S +T T N VSS++ S++
Sbjct: 100 PTSSTPDSLNSTTYAPRVSSDSFTVATP--LSLQSTTTRTRTRNNTVSSQITASSSLTTD 157
Query: 266 ---SSSSHDWTATISS 278
++S++ W+A S
Sbjct: 158 VGNATSANIWSANAES 173
Score = 41 (19.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 198 NRNLVDIKQEDFPRSSSPVYNQSHSFGYSDSSSLRDPSVISSNGVSTTTGAHNTG 252
N NL +I + P + P+Y + +++ R V G S++T G
Sbjct: 8 NGNLSNIPEVIDPGITIPIYEEDIRNDTRMNTNARSVRVSDKRGRSSSTSPQKIG 62
>TAIR|locus:2086760 [details] [associations]
symbol:PUM24 "pumilio 24" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB028608 eggNOG:NOG273657 KO:K14844 EMBL:AY045638
IPI:IPI00521400 RefSeq:NP_566559.1 UniGene:At.5720
ProteinModelPortal:Q9LRZ3 SMR:Q9LRZ3 STRING:Q9LRZ3 PaxDb:Q9LRZ3
PRIDE:Q9LRZ3 EnsemblPlants:AT3G16810.1 GeneID:820934
KEGG:ath:AT3G16810 TAIR:At3g16810 HOGENOM:HOG000070534
InParanoid:Q9LRZ3 OMA:IKHGSAK PhylomeDB:Q9LRZ3
ProtClustDB:CLSN2688458 Genevestigator:Q9LRZ3 Uniprot:Q9LRZ3
Length = 641
Score = 152 (58.6 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 57/276 (20%), Positives = 120/276 (43%)
Query: 659 GHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGS 718
G + E + SR +Q ++ CS EK +F E+ P L ++ + + IQK + S
Sbjct: 121 GKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGAS 180
Query: 719 PAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNG 778
Q + L G + PL ++G V++ A QK +L+ EL ++ +
Sbjct: 181 KQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYSTELQLFKGLTT 240
Query: 779 NHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEH--------CADKHQ 830
++ + ++ I K+G A + A+ ++ + H ADK
Sbjct: 241 SNE-KTVVDIIA--KLGLQKGAVNRHMTAIIQPILEKGIVDHTITHKLLIEYLTIADKTS 297
Query: 831 CQFIVDEILDNVCA-LAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASN 889
++ + ++ + + G+ + ++ G ER KII+ + H+ +++ +F S
Sbjct: 298 AADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKERKKIIKAMKEHVKKMAFDQFGSM 357
Query: 890 VIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQ 925
V+ C+ + + +L+ + I+ E TL ++ D+
Sbjct: 358 VLA-CI-FSIVDDTKLVTKIIVRELEATLKDLVMDK 391
Score = 122 (48.0 bits), Expect = 0.00093, P = 0.00093
Identities = 27/115 (23%), Positives = 61/115 (53%)
Query: 868 SKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFA 927
S+ IRK+ G + +++ +S V++ C+ + AE++++ E+ + L + +++A
Sbjct: 113 SEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTEL----QPQFLNLASNKYA 168
Query: 928 NYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEMLIGEENQTSE 982
+ +QK+ + +S+ Q A +S +R H L ++ +G +V +G Q E
Sbjct: 169 VHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGS-LVVEHAYHLGSAAQKQE 222
>UNIPROTKB|E1C1R5 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 OMA:RKDCDKE
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00574038 Ensembl:ENSGALT00000016546
ArrayExpress:E1C1R5 Uniprot:E1C1R5
Length = 638
Score = 158 (60.7 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 73/377 (19%), Positives = 166/377 (44%)
Query: 608 RNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSAD 667
+N+ + ++ + +G PK +F ++ K K R +L+D + + + +
Sbjct: 73 KNKQQSEKLAKKRRYQDSTQGESDSKKPKWDDFKKKKKELKQSR-QLNDRSNYDIIVKSK 131
Query: 668 QHGSRFIQQKLENCSVDEKASVFKEI--LPHASKLMTDVFGN---YVIQKFFEYGSPAQR 722
Q ++K C +++ + E+ L H K+ F + VIQ F +YG+ QR
Sbjct: 132 QIWESVRRKK---CDKEKREKLMNELQKLLHG-KIKNLAFAHDSTRVIQCFIQYGNDKQR 187
Query: 723 KELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVI 782
+E +L ++ LS Y +++K L +Q A++++ G V + +R + V+
Sbjct: 188 QETFEELKDSLVELSKSKYSRNIVKKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVV 247
Query: 783 QKCI-ECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDN 841
+ + E+ + G + P + +VLE +K + I+DE+
Sbjct: 248 EYAYNDKAILEQRNMLTEELYGNTFQVYKTPI-VPTLDKVLEAQPEKREA--ILDEMKQI 304
Query: 842 VCALAQDQYGNYVTQHVL---------QRGKPLERSKIIRKLSGHIVQLSQHKFASNVIE 892
+ +AQ + V +H L P +RS++I + ++ L+ + V
Sbjct: 305 LTPMAQKEA---VIKHSLVHKVFLDFFTHALPKQRSEMIEAIREAVIYLAHTHDGARVAM 361
Query: 893 KCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQ--QAMMLSRI 950
CL +G P +R++I++ + + E+ + +F++ V+ F+ +++ + ++++ +
Sbjct: 362 HCLWHGTPKDRKVIVKTMKTYIEK----IATGEFSHLVLLAAFDCIDDTKLVKQLIITEL 417
Query: 951 RTHAHVLKKYTYGKHIV 967
L +GK ++
Sbjct: 418 NASLPSLISNKHGKKVL 434
Score = 41 (19.5 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 156 VTLSTHKEESEDDRSPKHFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSP 215
V L T + +++ PK S + V K G +VK Q +N KQ+ +
Sbjct: 35 VPLKTFHSKGDEEEKPKSISKKPV--KGNLRPGRASVK---QFKN----KQQSEKLAKKR 85
Query: 216 VYNQSHSFGYSDS 228
Y S G SDS
Sbjct: 86 RYQDSTQ-GESDS 97
>SGD|S000002904 [details] [associations]
symbol:PUF6 "Pumilio-homology domain protein that binds the
3' UTR of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0015934 "large ribosomal subunit"
evidence=IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IDA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002904 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005934 GO:GO:0006810
EMBL:BK006938 EMBL:U33057 GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:0015934 eggNOG:NOG273657 KO:K14844
GeneTree:ENSGT00390000015757 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF PIR:S69554 RefSeq:NP_010784.1
ProteinModelPortal:Q04373 SMR:Q04373 DIP:DIP-6579N IntAct:Q04373
MINT:MINT-637951 STRING:Q04373 PaxDb:Q04373 PeptideAtlas:Q04373
EnsemblFungi:YDR496C GeneID:852107 KEGG:sce:YDR496C CYGD:YDR496c
NextBio:970463 Genevestigator:Q04373 GermOnline:YDR496C
Uniprot:Q04373
Length = 656
Score = 150 (57.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 47/226 (20%), Positives = 98/226 (43%)
Query: 671 SRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLV 730
SR +Q ++ S D + + + L T +G Y++ K YGS + R+ + N+L
Sbjct: 171 SRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELH 230
Query: 731 GQILPLSMQMYGCRVIQKALETIEI-EQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECI 789
G + L G V++ EQ+ Q+++E G R+ + + I+K E
Sbjct: 231 GSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKDLTIEKVCES- 289
Query: 790 PPEKIGFIISAFCGQV-AALSMHPYGCRVIQRVLEH---CADKHQCQFIVDEILDNVCAL 845
EK I G + A++ G +++ + A++ + +++ + + L
Sbjct: 290 SIEKRNIIARNLIGTITASVEKGSTGFQILHAAMREYVKIANEKEISEMIELLHEQFAEL 349
Query: 846 AQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVI 891
G+ V ++ R ER I++ L H +L ++++ N++
Sbjct: 350 VHTPEGSDVACTLVARANAKERKLILKALKNHAEKLIKNEYG-NIV 394
Score = 130 (50.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 47/228 (20%), Positives = 96/228 (42%)
Query: 709 VIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQ 768
++Q +Y S +R+++ + L G+ L+ YG ++ K L + ++ EL G
Sbjct: 173 IVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGS 232
Query: 769 VMRCVRDQNGNHVIQKCIECIPP-EKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCAD 827
+ + +R + G +V++ E+ +I F G A+ + I++V E +
Sbjct: 233 LRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKDLTIEKVCESSIE 292
Query: 828 KHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQR-----GKPLERSKIIRKLSGHIVQLS 882
K I ++ + A + + H R E S++I L +L
Sbjct: 293 KRN--IIARNLIGTITASVEKGSTGFQILHAAMREYVKIANEKEISEMIELLHEQFAELV 350
Query: 883 QHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYV 930
S+V +A ER+LI++ + H E+ ++K+++ N V
Sbjct: 351 HTPEGSDVACTLVARANAKERKLILKALKNHAEK----LIKNEYGNIV 394
Score = 127 (49.8 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 43/171 (25%), Positives = 77/171 (45%)
Query: 816 RVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLS 875
R++Q ++++ + K + + IVD + LA YG Y+ +L G R II +L
Sbjct: 172 RIVQTLVKY-SSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELH 230
Query: 876 GHIVQLSQHKFASNVIEKCLA-YGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKI 934
G + +L +H+ + V+E Y +R+ +I+E G KD ++K+
Sbjct: 231 GSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKD----LTIEKV 286
Query: 935 FELSSESQQAMMLSRIRTHAHVLKKYTYG---KHIVARFEMLIGEENQTSE 982
E S E + + + I T ++K + G H R + I E + SE
Sbjct: 287 CESSIEKRNIIARNLIGTITASVEKGSTGFQILHAAMREYVKIANEKEISE 337
Score = 43 (20.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 522 SKGGVLGSHTNSHELKKGSDMAASDVQTFQHYRS 555
S+GG G+HT +L K M Q +S
Sbjct: 96 SEGGENGNHTEQRKLLKERKMQRKSGTQVQQIKS 129
Score = 42 (19.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 140 LTSLDNS-SNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNG 184
L L S S ++ +S EE E++ K D+ +NG
Sbjct: 57 LDDLSTSDSEAEEEADELDISDDSEEHENENEEKEGKDKSEGGENG 102
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 141 (54.7 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 59/246 (23%), Positives = 105/246 (42%)
Query: 693 ILPHASKLMTDVFGNYVIQKFFEY-GSPAQRKELANQLVGQILPLSMQMYGCRVIQKALE 751
+L +L D GN ++QK F S + + ++ + L + G IQK +
Sbjct: 13 MLDELPELSYDYLGNTIVQKLFTLVESSLVKLMMVKEVAPYLTQLGIHKNGTWAIQKIIN 72
Query: 752 TIEIE-QKAQLV-RELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALS 809
+ Q+ L+ L ++ DQ GN+VIQ CI+ P F+ A +S
Sbjct: 73 LCHSDYQQMYLIGASLKPYAVKLFNDQFGNYVIQGCIKFGSPFN-DFVFEAMLDNFLEIS 131
Query: 810 MHPYGCRVIQRVLEHCADKHQCQFIVDE--------ILDNVCALAQDQYGNYVTQHVLQR 861
+ +G R I+ +LE C D + +E I++ LA + G+ + L
Sbjct: 132 VGRFGARCIRTILESCHDSSSTSPVTNEQVLLVAGLIIEFANELAVNSNGSLLITWYLDT 191
Query: 862 GKPLERSKI---IRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETL 918
K + SKI + K +I L HK A+ + K L + + + + +N+ETL
Sbjct: 192 FKDCD-SKIELLMSKFLPNIRALCVHKLANLTVLKILNNRIDDKSRVATMDAIFNNKETL 250
Query: 919 LTMMKD 924
++++
Sbjct: 251 EYILQE 256
Score = 130 (50.8 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 44/201 (21%), Positives = 90/201 (44%)
Query: 654 LSDITGHIVEFSADQHGSRFIQQKLENCSVDEKAS--VFKEILPHASKLMTDVFGNYVIQ 711
+ ++ ++ + ++G+ IQ+ + C D + + + P+A KL D FGNYVIQ
Sbjct: 47 VKEVAPYLTQLGIHKNGTWAIQKIINLCHSDYQQMYLIGASLKPYAVKLFNDQFGNYVIQ 106
Query: 712 KFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETI-EIEQKAQLVRE----LD 766
++GSP + ++ L +S+ +G R I+ LE+ + + + E +
Sbjct: 107 GCIKFGSPFN-DFVFEAMLDNFLEISVGRFGARCIRTILESCHDSSSTSPVTNEQVLLVA 165
Query: 767 GQVMRCVRD----QNGNHVIQKCIECIPP--EKIGFIISAFCGQVAALSMHPYGCRVIQR 820
G ++ + NG+ +I ++ KI ++S F + AL +H + +
Sbjct: 166 GLIIEFANELAVNSNGSLLITWYLDTFKDCDSKIELLMSKFLPNIRALCVHKLANLTVLK 225
Query: 821 VLEHCADKHQCQFIVDEILDN 841
+L + D +D I +N
Sbjct: 226 ILNNRIDDKSRVATMDAIFNN 246
>UNIPROTKB|E2RBF2 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:AAEX03000606
EMBL:AAEX03000607 Ensembl:ENSCAFT00000003228 Uniprot:E2RBF2
Length = 648
Score = 147 (56.8 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 78/381 (20%), Positives = 168/381 (44%)
Query: 608 RNEMRFSPVSNRYSGWQ--GQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFS 665
+N+ + + NR +Q G+ + PK +F ++ K K R +LSD T + +
Sbjct: 79 KNKFQQANKFNRKRKFQADGKSDESAAKKPKWDDFKKKKKELKQSR-QLSDKTNYDIVVR 137
Query: 666 ADQHGSRFIQQKLENCSVDEKASVFKEILPHAS-KLMTDVFGN---YVIQKFFEYGSPAQ 721
A Q +++K +C +++ + ++ K+ T F + VIQ + +YG+ Q
Sbjct: 138 AKQIWET-LRRK--DCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQ 194
Query: 722 RKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHV 781
R++ +L + LS Y +++K L Q A+++R G V + +R + +
Sbjct: 195 REQAFEELRDDFVQLSKAKYSRNIVKKFLMYGSKPQIAEIMRSFKGHVRKMLRHAEASAI 254
Query: 782 IQKCI-ECIPPEKIGFIISAFCGQVAAL---SMHPYGCRVIQRVLEHCADKHQCQFIVDE 837
++ + E+ + G L + HP + +VLE +K I+DE
Sbjct: 255 VEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHP----TLDKVLETQPEK--LDLIMDE 308
Query: 838 ILDNVCALAQDQYGNYVTQHVLQR---------GKPLERSKIIRKLSGHIVQLSQHKFAS 888
+ + +AQ + V +H L P RS++I + ++ L+ +
Sbjct: 309 MKQILTPMAQKEA---VIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVIYLAHTHDGA 365
Query: 889 NVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQ--QAMM 946
V CL +G P +R++I++ + + E+ + Q+++ V+ F+ +++ + ++
Sbjct: 366 RVAMHCLWHGTPKDRKVIVKTMKTYIEK----VANGQYSHLVLLAAFDCIDDTKLVKQII 421
Query: 947 LSRIRTHAHVLKKYTYGKHIV 967
+S I + YG+ ++
Sbjct: 422 ISEIINSLPNIVNDKYGRKVL 442
Score = 44 (20.5 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 140 LTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKH-FSD-EMVDRKNGFCSGNEAVKVAGQ 197
+TS N C++ + + K + + D+ PK+ F +RK F + ++ + A +
Sbjct: 48 ITS-KNFEKCAIKPGKKGVKQFKNKQQGDKIPKNKFQQANKFNRKRKFQADGKSDESAAK 106
Query: 198 NRNLVDIKQE 207
D K++
Sbjct: 107 KPKWDDFKKK 116
>FB|FBgn0015527 [details] [associations]
symbol:pen "penguin" species:7227 "Drosophila melanogaster"
[GO:0007475 "apposition of dorsal and ventral imaginal disc-derived
wing surfaces" evidence=IMP] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AE014298
GO:GO:0003723 GO:GO:0007475 EMBL:AF017777 ChiTaRS:Pen
eggNOG:NOG273657 KO:K14844 GeneTree:ENSGT00390000015757
EMBL:AF132165 PIR:T08427 RefSeq:NP_523429.1 UniGene:Dm.235
ProteinModelPortal:O61345 SMR:O61345 DIP:DIP-21277N
MINT:MINT-752576 STRING:O61345 PaxDb:O61345 PRIDE:O61345
EnsemblMetazoa:FBtr0077223 GeneID:33112 KEGG:dme:Dmel_CG1685
UCSC:CG1685-RA CTD:33112 FlyBase:FBgn0015527 HOGENOM:HOG000245365
InParanoid:O61345 OMA:SNSHIGL OrthoDB:EOG4PRR64 PhylomeDB:O61345
GenomeRNAi:33112 NextBio:781967 Bgee:O61345 GermOnline:CG1685
Uniprot:O61345
Length = 737
Score = 130 (50.8 bits), Expect = 0.00015, P = 0.00015
Identities = 50/266 (18%), Positives = 106/266 (39%)
Query: 671 SRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLV 730
+R IQ L+ S +A + +++LP ++ + + +Q+ +YG+PA + +L + L
Sbjct: 182 ARVIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLY 241
Query: 731 GQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790
G I+ L+ G ++ ++ Q+ + +E G + R +D N + E
Sbjct: 242 GHIVRLAGHSIGSGLLDSMYQSATPNQRIYMRQEFYGDLYRKAKDSNVKTLSDTYKEATN 301
Query: 791 PE-KIGFIISAFCGQVAALSMHPYGC--RVIQRVLEHC-ADKHQCQFIVDEILDNVCALA 846
+ I + A VA + V+ L C D+ + + V V +
Sbjct: 302 MKASILGSVKANLDHVANKQLVDSALVHAVMLEYLRACDEDEEKLEETVTAFAALVPHML 361
Query: 847 QDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELI 906
+ G+ + P R II+ + H+++++ H+ + L + +
Sbjct: 362 STKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHEHGHVFLISLL--NALDDTKAT 419
Query: 907 IEEILGHNEETLLTMMKDQFANYVVQ 932
+ I H L +M + V+Q
Sbjct: 420 KKAIYDHLHGDLKALMSSPYGRRVIQ 445
>CGD|CAL0005913 [details] [associations]
symbol:orf19.3547 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0005913 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000094
EMBL:AACQ01000093 eggNOG:NOG273657 KO:K14844 HOGENOM:HOG000246618
RefSeq:XP_714906.1 RefSeq:XP_714969.1 ProteinModelPortal:Q59ZH2
STRING:Q59ZH2 GeneID:3643365 GeneID:3643461 KEGG:cal:CaO19.11031
KEGG:cal:CaO19.3547 Uniprot:Q59ZH2
Length = 667
Score = 135 (52.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 55/252 (21%), Positives = 107/252 (42%)
Query: 653 ELSDITGHIVEFSADQH-GSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQ 711
E+ +++ ++ +H SR +Q ++ S + + + + +L T +G Y++
Sbjct: 157 EVWELSHDVINDLVMKHDASRVVQTLVKYSSKERRDIIVNSLKGSFYQLATSAYGKYLLI 216
Query: 712 KFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEI-EQKAQLVRELDGQVM 770
K YGS R + ++L G++ L G V++ EQ+ Q++RE G
Sbjct: 217 KLLHYGSKESRAIIVDELHGKLRKLMRHKEGAYVVEDLYVLYSTSEQRQQMIREFWGSQY 276
Query: 771 RCVRDQN-GNHVIQKCIECIPPEKIGFIISAFCGQV-AALSMHPYGCRVIQR-------V 821
RD G V+ E EK I+S G + A++ G +++ V
Sbjct: 277 AVFRDSGKGKTVLDITRESA--EKKQLIMSNLYGTIKASVEKGSTGFQILHAAMKEYVTV 334
Query: 822 LEHCADKHQCQF--IVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIV 879
L+ D + +D + + L Q G+ V +++ ER IIR L H
Sbjct: 335 LKDDIDANDSAIRDFIDLLGEQFAELVHTQEGSDVACNLIALANAKERKVIIRGLKTHTN 394
Query: 880 QLSQHKFASNVI 891
+L ++++ + V+
Sbjct: 395 ELIKNEYGNIVL 406
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 135 GNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRSPKHFSDEMVDRKNGFCSGNEAVKV 194
G +R +N S+ V++ L + ESE H S++ ++ + S + + +
Sbjct: 7 GVKRSADKYNNKSSKKAKVAE-KLPSPSSESE------H-SEDQIEESDAESSSGDDLDI 58
Query: 195 AGQNRNLVDIKQED 208
+ L D+ ED
Sbjct: 59 SEDEDELDDLDDED 72
Score = 40 (19.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 239 SNGVSTTTGAHNTGVSSKVDVSTAYNVSSSSHDWTATISSTPPTEEVTSNDTDIWTKDE 297
+ GV + +N S K V+ SS + + E + +D DI ++DE
Sbjct: 5 AKGVKRSADKYNNKSSKKAKVAEKLPSPSSESEHSEDQIEESDAESSSGDDLDI-SEDE 62
>POMBASE|SPCP1E11.11 [details] [associations]
symbol:puf6 "Puf family RNA-binding protein Puf6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISO] [GO:2000766 "negative regulation of cytoplasmic
translation" evidence=ISO] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPCP1E11.11 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:2000766 eggNOG:NOG273657 KO:K14844 PIR:T41690
RefSeq:NP_588564.1 ProteinModelPortal:Q9UU76 STRING:Q9UU76
PRIDE:Q9UU76 EnsemblFungi:SPCP1E11.11.1 GeneID:2538833
KEGG:spo:SPCP1E11.11 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF NextBio:20800015 Uniprot:Q9UU76
Length = 642
Score = 129 (50.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 52/287 (18%), Positives = 128/287 (44%)
Query: 653 ELSDITGHIVEFSADQHG-SRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQ 711
EL D+ V+ +H SR +Q ++ S ++ ++ E+ L +G Y+
Sbjct: 157 ELFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAI 216
Query: 712 KFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKAL-ETIEIEQKAQLVRELDGQVM 770
K F+YG+P ++ + ++ G ++ + V++ A E ++Q+ L+ E G
Sbjct: 217 KIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYGPEF 276
Query: 771 RCVRDQNGN-HVIQKCIECIPPEKIGFIISAFCGQV-AALSMHPYGCRVIQR-VLEHC-- 825
+ +D+ + H+ + I+ PEK I+ + +++ G ++ R +LE
Sbjct: 277 QVFKDRTQDIHIDKLLID--HPEKRPSIMQNLWKTIEGSIAKGSIGFTMVHRAMLEFINH 334
Query: 826 ADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHK 885
AD ++ + +++ + + + G+ V + +R +++ L ++++ ++
Sbjct: 335 ADSNEAKELLNLTKELIYEFVHTRDGSQVAMKLFALANAKDRKVMLKSLRPYLIETAKDS 394
Query: 886 FASNVIEKCLAYGGPAERELIIEEIL-GHNEETLLTMMKDQFANYVV 931
+ V+ L + ++ ++L E LL + D+FA ++
Sbjct: 395 YGHLVVVAALDC---TDDTIMTGKLLQAEFEGELLKLSADKFARRIL 438
Score = 45 (20.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 929 YVVQKIFELSSESQQAMMLSRIRTHAHVLKK 959
+VV + E S+S++ L +R H + L K
Sbjct: 599 FVVVAVLEALSDSEKQEFLKILRKHKNQLNK 629
>UNIPROTKB|F1NWW8 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00681111 Ensembl:ENSGALT00000034677
ArrayExpress:F1NWW8 Uniprot:F1NWW8
Length = 613
Score = 132 (51.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 62/305 (20%), Positives = 129/305 (42%)
Query: 608 RNEMRFSPVSNRYSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDITGHIVEFSAD 667
+N+ + ++ + +G PK +F ++ K K R +L+D + + + +
Sbjct: 73 KNKQQSEKLAKKRRYQDSTQGESDSKKPKWDDFKKKKKELKQSR-QLNDRSNYDIIVKSK 131
Query: 668 QHGSRFIQQKLENCSVDEKASVFKEI--LPHASKLMTDVFGN---YVIQKFFEYGSPAQR 722
Q ++K C +++ + E+ L H K+ F + VIQ F +YG+ QR
Sbjct: 132 QIWESVRRKK---CDKEKREKLMNELQKLLHG-KIKNLAFAHDSTRVIQCFIQYGNDKQR 187
Query: 723 KELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVI 782
+E +L ++ LS Y +++K L +Q A++++ G V + +R + V+
Sbjct: 188 QETFEELKDSLVELSKSKYSRNIVKKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVV 247
Query: 783 QKCI-ECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQC------QFI- 834
+ + E+ + G + P + +VLE +K + Q +
Sbjct: 248 EYAYNDKAILEQRNMLTEELYGNTFQVYKTPI-VPTLDKVLEAQPEKREAILDEMKQILT 306
Query: 835 --------VDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKF 886
++ I + V LA G V H L G P +R I++ + +I +++ +F
Sbjct: 307 PMAQNAEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYIEKIATGEF 366
Query: 887 ASNVI 891
+ V+
Sbjct: 367 SHLVL 371
Score = 41 (19.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 156 VTLSTHKEESEDDRSPKHFSDEMVDRKNGFCSGNEAVKVAGQNRNLVDIKQEDFPRSSSP 215
V L T + +++ PK S + V K G +VK Q +N KQ+ +
Sbjct: 35 VPLKTFHSKGDEEEKPKSISKKPV--KGNLRPGRASVK---QFKN----KQQSEKLAKKR 85
Query: 216 VYNQSHSFGYSDS 228
Y S G SDS
Sbjct: 86 RYQDSTQ-GESDS 97
>SGD|S000003851 [details] [associations]
symbol:JSN1 "Member of the Puf family of RNA-binding
proteins" species:4932 "Saccharomyces cerevisiae" [GO:0051654
"establishment of mitochondrion localization" evidence=IMP]
[GO:0034629 "cellular protein complex localization" evidence=IMP]
[GO:0032473 "external side of mitochondrial outer membrane"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000003851
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006943
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:L47993
GO:GO:0051654 GO:GO:0000288 EMBL:Z49591 eggNOG:COG5099
GO:GO:0034629 EMBL:L43493 PIR:S57112 RefSeq:NP_012624.1
ProteinModelPortal:P47135 SMR:P47135 DIP:DIP-1281N IntAct:P47135
MINT:MINT-405099 STRING:P47135 PaxDb:P47135 PeptideAtlas:P47135
EnsemblFungi:YJR091C GeneID:853553 KEGG:sce:YJR091C CYGD:YJR091c
GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136 OMA:CLEAHDI
OrthoDB:EOG4MWCFG NextBio:974290 Genevestigator:P47135
GermOnline:YJR091C GO:GO:0032473 Uniprot:P47135
Length = 1091
Score = 137 (53.3 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 51/226 (22%), Positives = 95/226 (42%)
Query: 693 ILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALET 752
+L +L +D GN ++QK FE+ S + + + + + + G QK +
Sbjct: 618 MLDELPELSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITM 677
Query: 753 IEI-EQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMH 811
Q Q+ + + + DQ GN+VIQ ++ P FI + + +
Sbjct: 678 AHTPRQIMQVTQGVKDYCTPLINDQFGNYVIQCVLKFGFPWN-QFIFESIIANFWVIVQN 736
Query: 812 PYGCRVIQRVLE-HCADKHQCQFIVDEILDNVCA-LAQDQYGNYVTQHVLQRGK-PLERS 868
YG R ++ LE H + ++ ++ L+ + G + L P S
Sbjct: 737 RYGARAVRACLEAHDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHS 796
Query: 869 KIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAE-RELIIEEILGH 913
+ +L+ IV+L H+ AS I K L Y G R++I++ + G+
Sbjct: 797 ILAPRLTKRIVELCGHRLASLTILKVLNYRGDDNARKIILDSLFGN 842
Score = 39 (18.8 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 22/109 (20%), Positives = 49/109 (44%)
Query: 65 MEGSFLAIENLIARKSSSSGVNLANFNGNIRNSESEERLQANQTCLKYYGSNVN-LNPRL 123
M +I ++ + +SSG+ +N + N + + LQ Q +N N LN
Sbjct: 175 MSSQITSISSIAPKPRTSSGIWSSNASAN--DPMQQHLLQQLQPTTSNNTTNSNTLNDYS 232
Query: 124 PR--HLDHDLNRFGNRRGLTSLDNSSNCSVHVSQVTLSTHKEESEDDRS 170
+ + D+ ++ G++ + N++N ++ S S ++ S+ + S
Sbjct: 233 TKTAYFDNMVSTSGSQMADNKM-NTNNLAIPNS--VWSNTRQRSQSNAS 278
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 983 913 0.00089 122 3 11 23 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 100
No. of states in DFA: 620 (66 KB)
Total size of DFA: 435 KB (2208 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 86.60u 0.10s 86.70t Elapsed: 00:00:06
Total cpu time: 86.64u 0.10s 86.74t Elapsed: 00:00:06
Start: Mon May 20 22:08:35 2013 End: Mon May 20 22:08:41 2013