Query 042165
Match_columns 983
No_of_seqs 308 out of 1671
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 1.2E-63 4E-68 560.7 26.6 343 636-979 3-348 (351)
2 3k49_A MRNA-binding protein PU 100.0 6.4E-62 2.2E-66 550.1 23.3 341 636-977 3-364 (369)
3 3k62_A FEM-3 mRNA-binding fact 100.0 7E-59 2.4E-63 532.7 22.8 341 620-977 5-406 (412)
4 3v71_A PUF (pumilio/FBF) domai 100.0 3E-57 1E-61 514.9 23.2 323 651-973 10-381 (382)
5 3bwt_A Protein PUF4; pumilio, 100.0 2E-57 6.8E-62 505.6 19.3 319 650-971 4-332 (333)
6 3gvo_A Pumilio 2, pumilio homo 100.0 7.5E-41 2.6E-45 375.6 18.6 302 632-938 32-343 (351)
7 3bwt_A Protein PUF4; pumilio, 100.0 1.3E-39 4.5E-44 362.2 19.8 282 688-976 6-297 (333)
8 3k49_A MRNA-binding protein PU 100.0 3.7E-40 1.3E-44 372.3 13.7 302 669-975 3-325 (369)
9 3v71_A PUF (pumilio/FBF) domai 100.0 3.9E-36 1.3E-40 341.5 19.4 302 631-936 25-380 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 4.4E-35 1.5E-39 335.7 23.2 278 694-976 28-349 (412)
11 3hjl_A Flagellar motor switch 87.5 39 0.0013 37.4 21.2 44 849-897 197-240 (329)
12 1wdy_A 2-5A-dependent ribonucl 64.3 55 0.0019 32.9 12.1 186 703-900 36-232 (285)
13 2of3_A ZYG-9; multifunctional 63.5 1.6E+02 0.0053 31.5 15.8 153 781-952 103-263 (266)
14 1xi4_A Clathrin heavy chain; a 60.1 71 0.0024 42.2 14.2 54 633-686 525-578 (1630)
15 3hjl_A Flagellar motor switch 53.3 2.6E+02 0.009 30.7 17.6 34 925-958 197-230 (329)
16 3tpo_A Importin subunit alpha- 52.6 2.1E+02 0.0072 32.7 15.8 273 678-956 189-498 (529)
17 3pkr_A FLIG, flagellar motor s 52.2 91 0.0031 33.7 11.6 112 714-826 112-227 (279)
18 1k1a_A B-cell lymphoma 3-encod 52.0 98 0.0033 30.4 11.3 130 666-798 5-136 (241)
19 3u0r_A Apoptosis inhibitor 5; 51.0 1E+02 0.0034 36.0 12.2 159 661-823 89-267 (507)
20 4fhr_B Flagellar motor switch 49.9 64 0.0022 33.5 9.7 112 714-826 54-170 (216)
21 2ilr_A Protein FACE, fanconi a 46.6 91 0.0031 33.4 10.3 154 676-847 42-213 (264)
22 2pnn_A Transient receptor pote 46.3 88 0.003 31.8 10.2 87 777-863 147-245 (273)
23 3jxi_A Vanilloid receptor-rela 43.0 1.4E+02 0.0049 29.9 11.1 191 672-865 7-239 (260)
24 1x5b_A Signal transducing adap 41.1 1.9E+02 0.0063 28.5 11.1 75 887-977 72-147 (163)
25 3u0r_A Apoptosis inhibitor 5; 39.7 5.1E+02 0.018 30.2 19.1 101 862-968 146-263 (507)
26 2f8y_A Notch homolog 1, transl 39.1 1.8E+02 0.0063 28.1 10.9 93 701-799 53-146 (223)
27 2ilr_A Protein FACE, fanconi a 38.2 1.7E+02 0.0057 31.4 10.7 178 709-896 39-226 (264)
28 3pkr_A FLIG, flagellar motor s 37.0 1.6E+02 0.0054 31.8 10.5 108 713-839 57-167 (279)
29 1k1a_A B-cell lymphoma 3-encod 37.0 2E+02 0.0067 28.1 10.8 187 701-899 4-195 (241)
30 2etb_A Transient receptor pote 36.7 1.6E+02 0.0053 29.5 10.2 161 702-865 39-235 (256)
31 2yvy_A MGTE, Mg2+ transporter 36.1 56 0.0019 34.4 6.8 20 676-695 38-57 (278)
32 1b3u_A Protein (protein phosph 34.9 4.2E+02 0.014 29.6 14.5 8 853-860 441-448 (588)
33 1b3u_A Protein (protein phosph 33.2 3E+02 0.01 30.9 12.9 10 638-647 13-22 (588)
34 2bpt_A Importin beta-1 subunit 30.5 7.4E+02 0.025 29.3 20.1 35 942-976 750-789 (861)
35 3hra_A Ankyrin repeat family p 30.2 2.4E+02 0.0083 26.6 9.9 94 702-800 35-128 (201)
36 2qk1_A Protein STU2; STU2P, XM 29.4 4.8E+02 0.016 26.8 17.5 128 812-950 100-246 (249)
37 2rfa_A Transient receptor pote 27.8 2.7E+02 0.0094 27.0 10.1 54 846-899 149-209 (232)
38 2bpt_A Importin beta-1 subunit 26.5 8.5E+02 0.029 28.7 17.5 11 965-975 825-835 (861)
39 2dzn_A Probable 26S proteasome 25.9 3.3E+02 0.011 26.2 10.2 94 702-799 32-128 (228)
40 2qk2_A LP04448P; mini spindles 25.2 5.2E+02 0.018 25.7 16.6 129 812-951 94-232 (242)
41 3eu9_A Huntingtin-interacting 25.2 2.7E+02 0.0094 26.8 9.4 93 702-799 38-130 (240)
42 2rfa_A Transient receptor pote 24.7 3.3E+02 0.011 26.4 10.0 158 702-865 33-211 (232)
43 2f8y_A Notch homolog 1, transl 24.6 3.1E+02 0.011 26.4 9.7 92 703-799 22-113 (223)
44 4fhr_B Flagellar motor switch 24.5 2E+02 0.0067 29.8 8.3 51 789-840 57-111 (216)
45 3jxi_A Vanilloid receptor-rela 24.1 1.6E+02 0.0054 29.5 7.6 188 704-900 3-238 (260)
46 3b2a_A TON_1937, putative unch 23.7 6.9E+02 0.024 26.6 15.4 59 853-911 55-121 (265)
47 3utm_A Tankyrase-1; tankyrase, 22.0 6.5E+02 0.022 25.7 13.2 126 666-799 20-145 (351)
48 3o2t_A Symplekin; heat repeat, 21.6 8.8E+02 0.03 27.1 13.7 56 918-973 251-315 (386)
49 2pnn_A Transient receptor pote 21.1 2.1E+02 0.0071 29.0 7.8 55 846-900 179-246 (273)
50 3d9h_A CDNA FLJ77766, highly s 20.7 3.6E+02 0.012 27.7 9.7 52 701-755 87-138 (285)
51 2etb_A Transient receptor pote 20.4 2E+02 0.0069 28.7 7.5 25 776-800 88-112 (256)
52 3ldz_A STAM-1, signal transduc 20.4 5.5E+02 0.019 24.3 10.2 73 888-977 63-136 (140)
53 3g2s_A C-terminal fragment of 20.1 5.5E+02 0.019 24.8 10.1 76 888-977 69-145 (149)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=1.2e-63 Score=560.66 Aligned_cols=343 Identities=55% Similarity=0.948 Sum_probs=328.4
Q ss_pred hhhHHHHHHhcCcCccchHhhhhHHHHHhhcCCCccHHHHHhhhcCCHHHHHHHHHHHhHhHHhhhcCccCCeeehhhhc
Q 042165 636 KICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFE 715 (983)
Q Consensus 636 ~rs~lLeeL~~~~~r~~~L~eIkG~VveLs~Dq~gSRVLQklLe~~s~Eqr~~If~EL~~~i~~L~tD~yGshVVQKLLe 715 (983)
-|+.++|+++.++.+.++|++++|+|+++|+||+|||+||++|+++++++++.||+|+.+++.+||+|+||||||||||+
T Consensus 3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle 82 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 82 (351)
T ss_dssp CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred CccHHHHHHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHh
Confidence 37889999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhhhcCCchhHH
Q 042165 716 YGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIG 795 (983)
Q Consensus 716 ~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~~~~e~~~ 795 (983)
+++++++..|++.+.+++.+|+.|+|||||||++|+.+..+++..|++||.+++..|++|++||||+|+|+++.+++.+.
T Consensus 83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred hCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHhcCCchhHHHHHHHHH
Q 042165 796 FIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLS 875 (983)
Q Consensus 796 ~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~k~r~~II~~L~ 875 (983)
+|++.+.+++..|++|+|||+|||++|+++. ++++..|+++|.+++..|++|+|||||||++|++++++.+..|++.|+
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHCC-HHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 9999999999999999999999999999986 567888999999999999999999999999999999999999999999
Q ss_pred HHHHhhccChhHHHHHHHHHHhCCHHHHHHHHHHHHhCCH---HHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHH
Q 042165 876 GHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNE---ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT 952 (983)
Q Consensus 876 g~~veLs~~K~GS~VVEk~L~~a~~keRk~IIkeLl~~~~---e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~ 952 (983)
+++++|+++||||+|||+||+++++++|+.|+++|+...+ +.+..|++|+|||||||++|+.+++++|+.|++.|++
T Consensus 242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~ 321 (351)
T 3gvo_A 242 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 321 (351)
T ss_dssp TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996321 3699999999999999999999999999999999999
Q ss_pred hHHHHhhCCCchHHHHHHHHHhhcccC
Q 042165 953 HAHVLKKYTYGKHIVARFEMLIGEENQ 979 (983)
Q Consensus 953 ~L~~L~~~~~Gk~Vv~rlekl~~~~~~ 979 (983)
++..|++++||+||++++++++...++
T Consensus 322 ~~~~L~~~~~g~~i~~kl~~~~~~~~~ 348 (351)
T 3gvo_A 322 HITTLRKYTYGKHILAKLEKYYLKNSP 348 (351)
T ss_dssp GHHHHTTSTTTHHHHHHHHHHTC----
T ss_pred HHHHHhcCCchHHHHHHHHHHHhhcCc
Confidence 999999999999999999999987664
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=6.4e-62 Score=550.07 Aligned_cols=341 Identities=46% Similarity=0.736 Sum_probs=321.4
Q ss_pred hhhHHHHHHhcCcC-----ccchHhhhhHHHHHhhcCCCccHHHHHhhhcCCHHHHHHHHHHHhHhHHhhhcCccCCeee
Q 042165 636 KICNFLEELKSGKG-----RRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVI 710 (983)
Q Consensus 636 ~rs~lLeeL~~~~~-----r~~~L~eIkG~VveLs~Dq~gSRVLQklLe~~s~Eqr~~If~EL~~~i~~L~tD~yGshVV 710 (983)
.|+.+||+|+.+.. +.+.+++++||++++|+||+|||+||++|+++++++++.||+|+.+++.+||+|+||||||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 68999999997753 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhhhcCC
Q 042165 711 QKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIP 790 (983)
Q Consensus 711 QKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~~~ 790 (983)
||+|++++++++..|++.+.+++.+|+.|+|||||||++|++++.+++..|++||.+++..|++|++||||||+||++.+
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHhcCCchh----
Q 042165 791 PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE---- 866 (983)
Q Consensus 791 ~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~k~---- 866 (983)
++.+.+|++.+.+++..|+.|+|||+|+|+||+++. ++++..|+++|..++..|+.|+|||||||++|+.++++.
T Consensus 163 ~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~-~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS-SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhH
Confidence 999999999999999999999999999999999987 567888999999999999999999999999999988765
Q ss_pred --HHHHHHHHHHHHHhhccChhHHHHHHHHHHhCCHHHHHHHHHHHHhCC---------HHHHHHHHcCcChhHHHHHHH
Q 042165 867 --RSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHN---------EETLLTMMKDQFANYVVQKIF 935 (983)
Q Consensus 867 --r~~II~~L~g~~veLs~~K~GS~VVEk~L~~a~~keRk~IIkeLl~~~---------~e~L~~La~DqyGnyVLQkLL 935 (983)
+..|++.|.+++++|+++||||+|||+||+++++++|+.|+++|+... .+.|..|++|+|||||||++|
T Consensus 242 ~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l 321 (369)
T 3k49_A 242 DIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLV 321 (369)
T ss_dssp HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHH
Confidence 578999999999999999999999999999999999999999998753 146889999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhHHHHhh-CCCchHHHHHHHHHhhcc
Q 042165 936 ELSSESQQAMMLSRIRTHAHVLKK-YTYGKHIVARFEMLIGEE 977 (983)
Q Consensus 936 e~~dd~~Rk~Ll~eLk~~L~~L~~-~~~Gk~Vv~rlekl~~~~ 977 (983)
+.+++.+|+.|+++|++++.+|+. ++||+||++++|+++.-.
T Consensus 322 ~~~~~~~~~~l~~~i~p~l~~L~~~~~~G~~~~~~~e~~~~~~ 364 (369)
T 3k49_A 322 NVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAALV 364 (369)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHHH
Confidence 999999999999999999999987 599999999999998754
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=7e-59 Score=532.66 Aligned_cols=341 Identities=27% Similarity=0.509 Sum_probs=309.4
Q ss_pred CCCccccccCCCCCChhhhHHHHHHhcCcCccchHhhh--hHHHHHhhcCCCccHHHHHhhhcC-CHHHHHHHHHHHhHh
Q 042165 620 YSGWQGQRGFESYNDPKICNFLEELKSGKGRRFELSDI--TGHIVEFSADQHGSRFIQQKLENC-SVDEKASVFKEILPH 696 (983)
Q Consensus 620 ~~~We~~R~~~~~~~~~rs~lLeeL~~~~~r~~~L~eI--kG~VveLs~Dq~gSRVLQklLe~~-s~Eqr~~If~EL~~~ 696 (983)
.+-|.-++.++ +.+. +.|.++ +|+|+++|+||+|||+||++|+++ ++++++.||+||.++
T Consensus 5 ~~~w~~~~~~~-~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~ 67 (412)
T 3k62_A 5 LPTWSLDSNGE-MRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGR 67 (412)
T ss_dssp CCGGGBCTTSS-BCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSS
T ss_pred CccchhcccCC-CCCC----------------CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 56799999888 4433 346666 699999999999999999999997 899999999999985
Q ss_pred ---HHhhhcCccCCeeehhhhccCCH-------HHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHH-
Q 042165 697 ---ASKLMTDVFGNYVIQKFFEYGSP-------AQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVREL- 765 (983)
Q Consensus 697 ---i~~L~tD~yGshVVQKLLe~~s~-------eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL- 765 (983)
+.+||+|+||||||||||++|++ +++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|++||
T Consensus 68 ~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~ 147 (412)
T 3k62_A 68 KDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 147 (412)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSC
T ss_pred hhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 89999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred -hhccccccccccCccchhhhhhcCCchhHHHHHHHhh--hhhhhhccCCchhHHHHHHHHhcCCH-----------HHH
Q 042165 766 -DGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFC--GQVAALSMHPYGCRVIQRVLEHCADK-----------HQC 831 (983)
Q Consensus 766 -~g~i~~L~kD~~GNhVLQk~Le~~~~e~~~~Ii~~~k--~~l~~Ls~hk~GS~VLQkiLe~~~d~-----------~~~ 831 (983)
.+++..|++|++|||||||||++.+++.+++|++.+. +++.+|++|+|||+|||+||++|.+. +++
T Consensus 148 ~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr 227 (412)
T 3k62_A 148 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLR 227 (412)
T ss_dssp CSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHH
T ss_pred ccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHH
Confidence 6899999999999999999999999999999999998 59999999999999999999999753 233
Q ss_pred H----HHHHHHHHHHHHHhhCcCccHHHHHHHhcCCchh-HHHHHH-HHHHHHHhhccChhHHHHHHHHHHhCCHHHHHH
Q 042165 832 Q----FIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE-RSKIIR-KLSGHIVQLSQHKFASNVIEKCLAYGGPAEREL 905 (983)
Q Consensus 832 ~----~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~k~-r~~II~-~L~g~~veLs~~K~GS~VVEk~L~~a~~keRk~ 905 (983)
. .|+++|..++..|++|+|||||||++|+++.++. |..|++ .|++++++||++||||+||||||+++++++|+.
T Consensus 228 ~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ 307 (412)
T 3k62_A 228 ERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAE 307 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHH
Confidence 3 4677788888999999999999999999988764 788887 599999999999999999999999999999999
Q ss_pred HHHHHHhC----C---HHHHHHHHcCcChhHHHHHHHhcCCHH--------------------HHHHHHHHHHHhHHHHh
Q 042165 906 IIEEILGH----N---EETLLTMMKDQFANYVVQKIFELSSES--------------------QQAMMLSRIRTHAHVLK 958 (983)
Q Consensus 906 IIkeLl~~----~---~e~L~~La~DqyGnyVLQkLLe~~dd~--------------------~Rk~Ll~eLk~~L~~L~ 958 (983)
|++||+.. . .+.|..|++|+|||||||++|++|++. .+++|+.++++++..|+
T Consensus 308 ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~ 387 (412)
T 3k62_A 308 MMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLS 387 (412)
T ss_dssp HHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 99999953 1 146899999999999999999999875 25789999999999999
Q ss_pred hCCCchHHHHHHHHHhhcc
Q 042165 959 KYTYGKHIVARFEMLIGEE 977 (983)
Q Consensus 959 ~~~~Gk~Vv~rlekl~~~~ 977 (983)
.++|||||+++++++...+
T Consensus 388 ~~~~Gk~i~~~l~~~~~~~ 406 (412)
T 3k62_A 388 RFSSGKKMIETLANLRSTH 406 (412)
T ss_dssp TSHHHHHHHHHHHHHHC--
T ss_pred cCCCccHHHHHHHHhhccC
Confidence 9999999999999987653
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=3e-57 Score=514.88 Aligned_cols=323 Identities=28% Similarity=0.510 Sum_probs=294.0
Q ss_pred cchHhhh--hHHHHHhhcCCCccHHHHHhhhcCCHHH-HHHHHHHHh---HhHHhhhcCccCCeeehhhhccCCHHHHHH
Q 042165 651 RFELSDI--TGHIVEFSADQHGSRFIQQKLENCSVDE-KASVFKEIL---PHASKLMTDVFGNYVIQKFFEYGSPAQRKE 724 (983)
Q Consensus 651 ~~~L~eI--kG~VveLs~Dq~gSRVLQklLe~~s~Eq-r~~If~EL~---~~i~~L~tD~yGshVVQKLLe~~s~eqr~~ 724 (983)
.+.|.++ +|+++++|+||+||||||++|+.++.++ ++.||+||. +++.+||+|+||||||||||++|+++++..
T Consensus 10 ~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~ 89 (382)
T 3v71_A 10 FISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRE 89 (382)
T ss_dssp -CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHH
T ss_pred cCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHH
Confidence 3567788 7999999999999999999999998654 789999985 789999999999999999999999999999
Q ss_pred HHHH-HHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhh-ccccccccccCccchhhhhhcCCchhHHHHHHHhh
Q 042165 725 LANQ-LVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDG-QVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFC 802 (983)
Q Consensus 725 Iie~-L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g-~i~~L~kD~~GNhVLQk~Le~~~~e~~~~Ii~~~k 802 (983)
|+.. +++++..|+.|+|||||||++|++++.+++..|++||.+ +++.|++|++||||||+||++.+++.+++|++.+.
T Consensus 90 li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~ 169 (382)
T 3v71_A 90 LLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLS 169 (382)
T ss_dssp HHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHH
T ss_pred HHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHh
Confidence 9887 589999999999999999999999999999999999998 89999999999999999999999999999999997
Q ss_pred --hhhhhhccCCchhHHHHHHHHhcCCHH------H----HHHHHHHHHHHHHHHhhCcCccHHHHHHHhcCCc--hhHH
Q 042165 803 --GQVAALSMHPYGCRVIQRVLEHCADKH------Q----CQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKP--LERS 868 (983)
Q Consensus 803 --~~l~~Ls~hk~GS~VLQkiLe~~~d~~------~----~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~--k~r~ 868 (983)
+++.++++|+|||+|||+||++|.++. + ...|+++|..++..|++|+|||||||++|+++.+ +.|.
T Consensus 170 ~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~ 249 (382)
T 3v71_A 170 SGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRD 249 (382)
T ss_dssp STTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHH
T ss_pred cccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHH
Confidence 699999999999999999999997642 1 2346677777888999999999999999999764 4688
Q ss_pred HHHHH-HHHHHHhhccChhHHHHHHHHHHhCCHHHHHHHHHHHHhC-------CHHHHHHHHcCcChhHHHHHHHhcCCH
Q 042165 869 KIIRK-LSGHIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGH-------NEETLLTMMKDQFANYVVQKIFELSSE 940 (983)
Q Consensus 869 ~II~~-L~g~~veLs~~K~GS~VVEk~L~~a~~keRk~IIkeLl~~-------~~e~L~~La~DqyGnyVLQkLLe~~dd 940 (983)
.|++. |.+++++|+++||||+|||+||+++++++|+.|+++|+.. ..+.|..|++|+|||||||++|+.+++
T Consensus 250 ~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~ 329 (382)
T 3v71_A 250 TIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTA 329 (382)
T ss_dssp HHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHccc
Confidence 99975 9999999999999999999999999999999999999952 114799999999999999999999987
Q ss_pred H-------------------HHHHHHHHHHHhHHHHhhCCCchHHHHHHHHH
Q 042165 941 S-------------------QQAMMLSRIRTHAHVLKKYTYGKHIVARFEML 973 (983)
Q Consensus 941 ~-------------------~Rk~Ll~eLk~~L~~L~~~~~Gk~Vv~rlekl 973 (983)
. .+++|++++++|+..|+.++|||||+++++|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 330 ALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp HCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred ccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhc
Confidence 3 25789999999999999999999999999984
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2e-57 Score=505.58 Aligned_cols=319 Identities=32% Similarity=0.506 Sum_probs=298.3
Q ss_pred ccchHhhhhHHHHHhhcCCCccHHHHHhhhcCCHHHHHHHHHHHhHhHHhhhcCccCCeeehhhhccCCHHHHHHHHHHH
Q 042165 650 RRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQL 729 (983)
Q Consensus 650 r~~~L~eIkG~VveLs~Dq~gSRVLQklLe~~s~Eqr~~If~EL~~~i~~L~tD~yGshVVQKLLe~~s~eqr~~Iie~L 729 (983)
+...+++++|+++++|+||+|||+||++|++++.++++.||+|+.+++.+||+|+||||||||+|++++++++..|++.+
T Consensus 4 ~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~ 83 (333)
T 3bwt_A 4 ADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKIS 83 (333)
T ss_dssp TTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhhhcccchhHHHHHHHhhcC-HHHHHHHHHHHhhccccccccccCccchhhhhhcCCchhHHHHHHHhhhhhhhh
Q 042165 730 VGQILPLSMQMYGCRVIQKALETIE-IEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAAL 808 (983)
Q Consensus 730 ~g~i~~La~h~yGSrVIQklLe~as-~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~~~~e~~~~Ii~~~k~~l~~L 808 (983)
.+++.+|++|+|||||||++|+++. .+++..+++||.+++..|++|++||||||+||++.+++.+++|++.+.+++.+|
T Consensus 84 ~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 84 SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp GGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHH
T ss_pred HhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 566777899999999999999999999999999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHhcCCchh----HHHHHHHHHHHHHhhccC
Q 042165 809 SMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLE----RSKIIRKLSGHIVQLSQH 884 (983)
Q Consensus 809 s~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~k~----r~~II~~L~g~~veLs~~ 884 (983)
++|++||+|+|+||+++. ++++..|+++|.+++..|+.|+|||||||++|+.++++. ++.|++.|++++.+|+++
T Consensus 164 ~~~~~Gs~Vvq~~l~~~~-~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~ 242 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHGT-TEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 242 (333)
T ss_dssp HTSTTHHHHHHHHHHHCC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTS
T ss_pred hcCchhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHcc
Confidence 999999999999999986 667899999999999999999999999999999876543 689999999999999999
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHhCCH-HHHHHHHcCcChhHHHHHHHhcCCHH---HHHHHHHHHHHhH-HHHhh
Q 042165 885 KFASNVIEKCLAYGGPAERELIIEEILGHNE-ETLLTMMKDQFANYVVQKIFELSSES---QQAMMLSRIRTHA-HVLKK 959 (983)
Q Consensus 885 K~GS~VVEk~L~~a~~keRk~IIkeLl~~~~-e~L~~La~DqyGnyVLQkLLe~~dd~---~Rk~Ll~eLk~~L-~~L~~ 959 (983)
||||+||++||+.++ .++.|+.+++.... +.+..|+.|+|||||||++|+.++++ .++.|+++|++++ .+|+.
T Consensus 243 k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr~ 320 (333)
T 3bwt_A 243 KFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRN 320 (333)
T ss_dssp TTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGGG
T ss_pred cHHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhcC
Confidence 999999999999754 46789999986532 67999999999999999999999875 6799999999998 99999
Q ss_pred CCCchHHHHHHH
Q 042165 960 YTYGKHIVARFE 971 (983)
Q Consensus 960 ~~~Gk~Vv~rle 971 (983)
++|||||+++|+
T Consensus 321 ~~~G~~i~~~l~ 332 (333)
T 3bwt_A 321 TPHGKRIIGMLH 332 (333)
T ss_dssp SHHHHHHHTTSC
T ss_pred CCCHHHHHHHhc
Confidence 999999998764
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=7.5e-41 Score=375.62 Aligned_cols=302 Identities=25% Similarity=0.357 Sum_probs=287.2
Q ss_pred CCChhhhHHHHHHhc---CcCccchHhhhhHHHHHhhcCCCccHHHHHhhhcCCHHHHHHHHHHHhHhHHhhhcCccCCe
Q 042165 632 YNDPKICNFLEELKS---GKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNY 708 (983)
Q Consensus 632 ~~~~~rs~lLeeL~~---~~~r~~~L~eIkG~VveLs~Dq~gSRVLQklLe~~s~Eqr~~If~EL~~~i~~L~tD~yGsh 708 (983)
+.|+.+|++|+.+.. .+.+..+++++.+++++|++|++|++|||++|++++++++..|++++.+++.+|++|+||++
T Consensus 32 a~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~r 111 (351)
T 3gvo_A 32 SQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCR 111 (351)
T ss_dssp HTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHH
T ss_pred hcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHH
Confidence 689999999998653 35677899999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhhhc
Q 042165 709 VIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIEC 788 (983)
Q Consensus 709 VVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~ 788 (983)
|||++|++++.+++..|++++.+++.+|+.|.+|++|||+++++++++++..|++.+.+++..++.+++|++|||+||++
T Consensus 112 vvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~ 191 (351)
T 3gvo_A 112 VIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEH 191 (351)
T ss_dssp HHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHhcCCchhHH
Q 042165 789 IPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERS 868 (983)
Q Consensus 789 ~~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~k~r~ 868 (983)
.+++.+..|++.+.+++..|++++||++|||++|+++. ++.+..|++.+.+++..|+.|+||++||++||+++++++|.
T Consensus 192 ~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~-~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~ 270 (351)
T 3gvo_A 192 CTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 270 (351)
T ss_dssp SCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCc-hhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999975 66788899999999999999999999999999999999999
Q ss_pred HHHHHHHH-------HHHhhccChhHHHHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHcCcChhHHHHHHHhcC
Q 042165 869 KIIRKLSG-------HIVQLSQHKFASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELS 938 (983)
Q Consensus 869 ~II~~L~g-------~~veLs~~K~GS~VVEk~L~~a~~keRk~IIkeLl~~~~e~L~~La~DqyGnyVLQkLLe~~ 938 (983)
.|++.|.. .+..|+.++||.+||+++|+.+++++|+.|++.|. +++..|.+++||++|+.++-...
T Consensus 271 ~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~----~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 271 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIR----PHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp HHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHG----GGHHHHTTSTTTHHHHHHHHHHT
T ss_pred HHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHH----HHHHHHhcCCchHHHHHHHHHHH
Confidence 99999985 79999999999999999999999999999999999 56999999999999999876553
No 7
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.3e-39 Score=362.19 Aligned_cols=282 Identities=21% Similarity=0.295 Sum_probs=261.6
Q ss_pred HHHHHHhHhHHhhhcCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhh
Q 042165 688 SVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDG 767 (983)
Q Consensus 688 ~If~EL~~~i~~L~tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g 767 (983)
.+++++.+++.+|++|++|+++||++|++++++++..|++++.+++.+|+.|+||++|||+++++++.+++..|++++.+
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~ 85 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSP 85 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGG
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccchhhhhhcCC-chhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 042165 768 QVMRCVRDQNGNHVIQKCIECIP-PEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALA 846 (983)
Q Consensus 768 ~i~~L~kD~~GNhVLQk~Le~~~-~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La 846 (983)
++..++.|++|++|||+++++.+ ++.+..|++.+.+++..|+++++|++|||+||+... ++.++.|++.+.+++..|+
T Consensus 86 ~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~-~~~~~~i~~~l~~~~~~l~ 164 (333)
T 3bwt_A 86 HFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLK-PENFQFIFDAISDSCIDIA 164 (333)
T ss_dssp GHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999975 456778899999999999999999999999999875 6678899999999999999
Q ss_pred hCcCccHHHHHHHhcCCchhHHHHHHHHHHHHHhhccChhHHHHHHHHHHhCCHHH----HHHHHHHHHhCCHHHHHHHH
Q 042165 847 QDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAE----RELIIEEILGHNEETLLTMM 922 (983)
Q Consensus 847 ~DqyGNyVVQ~LLe~~~~k~r~~II~~L~g~~veLs~~K~GS~VVEk~L~~a~~ke----Rk~IIkeLl~~~~e~L~~La 922 (983)
.|+||++|||++|+++++++++.|++.|.+++..|+.+.||++||+++|+.++++. ++.|++.|. +++.+|+
T Consensus 165 ~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~----~~~~~Ls 240 (333)
T 3bwt_A 165 THRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLK----PRAIELS 240 (333)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHG----GGHHHHH
T ss_pred cCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHH----HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877654 689999988 5699999
Q ss_pred cCcChhHHHHHHHhcCCHHHHHHHHHHHH-----HhHHHHhhCCCchHHHHHHHHHhhc
Q 042165 923 KDQFANYVVQKIFELSSESQQAMMLSRIR-----THAHVLKKYTYGKHIVARFEMLIGE 976 (983)
Q Consensus 923 ~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk-----~~L~~L~~~~~Gk~Vv~rlekl~~~ 976 (983)
+++||++||+++|+..+ .++.++.++. +++..|+.++||.+|+.++...+.+
T Consensus 241 ~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~ 297 (333)
T 3bwt_A 241 IHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHK 297 (333)
T ss_dssp TSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccC
Confidence 99999999999999754 4667777765 5799999999999999999988865
No 8
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=3.7e-40 Score=372.34 Aligned_cols=302 Identities=22% Similarity=0.331 Sum_probs=279.1
Q ss_pred CccHHHHHhhhcC--CHHHHHHHHHHHhHhHHhhhcCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHH
Q 042165 669 HGSRFIQQKLENC--SVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVI 746 (983)
Q Consensus 669 ~gSRVLQklLe~~--s~Eqr~~If~EL~~~i~~L~tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVI 746 (983)
+-|++++.+.... +..++...++++.+++.+|++|++|+++||++|++++++++..|++++.+++.+|+.|+||++||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 3588999888776 35789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhhhcCCchhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcC
Q 042165 747 QKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA 826 (983)
Q Consensus 747 QklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~~~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~ 826 (983)
|+++++++.+++..|++++.+++..|+.|++|++|||+++++..++.+..|++.+.+++..|++|++|++|||++|+.+.
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHhcCCchhHHHHHHHHHHHHHhhccChhHHHHHHHHHHhCCHHH----
Q 042165 827 DKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPAE---- 902 (983)
Q Consensus 827 d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~~~~k~r~~II~~L~g~~veLs~~K~GS~VVEk~L~~a~~ke---- 902 (983)
++.+..|++.+.+++..|+.|+||++|+|+||+++++++++.|++.|.+++..|+.+.||.+||+++|+.++++.
T Consensus 163 -~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 -IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp -GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred --HHHHHHHHHhCCHHHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHH-------------hHHHHhhCCCchHHH
Q 042165 903 --RELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT-------------HAHVLKKYTYGKHIV 967 (983)
Q Consensus 903 --Rk~IIkeLl~~~~e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~-------------~L~~L~~~~~Gk~Vv 967 (983)
++.|++.|. +++.+|++|+||++||+++|+.+++..|+.|+++|.. .+..|+.++||.+|+
T Consensus 242 ~~~~~i~~~l~----~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyVi 317 (369)
T 3k49_A 242 DIKQEIIETVA----NNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVI 317 (369)
T ss_dssp HHHHHHHHHHH----TTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHH
Confidence 678899888 4599999999999999999999999999999998853 477899999999999
Q ss_pred HHHHHHhh
Q 042165 968 ARFEMLIG 975 (983)
Q Consensus 968 ~rlekl~~ 975 (983)
+++...+.
T Consensus 318 q~~l~~~~ 325 (369)
T 3k49_A 318 QKLVNVSE 325 (369)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCC
Confidence 99988764
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=3.9e-36 Score=341.55 Aligned_cols=302 Identities=17% Similarity=0.245 Sum_probs=266.8
Q ss_pred CCCChhhhHHHHHHhcC---cC-ccchHhhhh---HHHHHhhcCCCccHHHHHhhhcCCHHHHHHHHHH-HhHhHHhhhc
Q 042165 631 SYNDPKICNFLEELKSG---KG-RRFELSDIT---GHIVEFSADQHGSRFIQQKLENCSVDEKASVFKE-ILPHASKLMT 702 (983)
Q Consensus 631 ~~~~~~rs~lLeeL~~~---~~-r~~~L~eIk---G~VveLs~Dq~gSRVLQklLe~~s~Eqr~~If~E-L~~~i~~L~t 702 (983)
.+.|+.+|++|+..... +. +..+++++. .++++|++|++|++++|++|++|+.+++..++.+ +.+++..|+.
T Consensus 25 ~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~ 104 (382)
T 3v71_A 25 FAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCK 104 (382)
T ss_dssp HHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHT
T ss_pred hccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHh
Confidence 36899999999987642 22 445666664 6899999999999999999999999999999988 5799999999
Q ss_pred CccCCeeehhhhccCCHHHHHHHHHHHHh-chhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHh--hccccccccccCc
Q 042165 703 DVFGNYVIQKFFEYGSPAQRKELANQLVG-QILPLSMQMYGCRVIQKALETIEIEQKAQLVRELD--GQVMRCVRDQNGN 779 (983)
Q Consensus 703 D~yGshVVQKLLe~~s~eqr~~Iie~L~g-~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~--g~i~~L~kD~~GN 779 (983)
|+||++||||+|++++.+++..|++++.+ ++..|+.|.+|+||||++|+.++.+++..|++++. +++..++.|++|+
T Consensus 105 ~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~Gc 184 (382)
T 3v71_A 105 DKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGC 184 (382)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTHH
T ss_pred CccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcCchhh
Confidence 99999999999999999999999999998 89999999999999999999999999999999997 6899999999999
Q ss_pred cchhhhhhcCCchh-----------HHHHHHHhhhhhhhhccCCchhHHHHHHHHhcCC-HHHHHHHHHH-HHHHHHHHh
Q 042165 780 HVIQKCIECIPPEK-----------IGFIISAFCGQVAALSMHPYGCRVIQRVLEHCAD-KHQCQFIVDE-ILDNVCALA 846 (983)
Q Consensus 780 hVLQk~Le~~~~e~-----------~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d-~~~~~~Li~e-Ll~~l~~La 846 (983)
+|||+||++++++. ...|++.+..++..|+.++||++|||.+|+++.. +..+..|+++ +.+++..|+
T Consensus 185 ~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~~~~~~Ls 264 (382)
T 3v71_A 185 RLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMS 264 (382)
T ss_dssp HHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTTTCHHHHT
T ss_pred HHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999876542 2346677888899999999999999999999765 3357788875 889999999
Q ss_pred hCcCccHHHHHHHhcCCchhHHHHHHHHHH-----------HHHhhccChhHHHHHHHHHHhCCHH--------------
Q 042165 847 QDQYGNYVTQHVLQRGKPLERSKIIRKLSG-----------HIVQLSQHKFASNVIEKCLAYGGPA-------------- 901 (983)
Q Consensus 847 ~DqyGNyVVQ~LLe~~~~k~r~~II~~L~g-----------~~veLs~~K~GS~VVEk~L~~a~~k-------------- 901 (983)
.++||++||++||++++++.|..|++.|.+ .+..|+.+.||.+||+++|+.+++.
T Consensus 265 ~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~~ 344 (382)
T 3v71_A 265 QDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAIL 344 (382)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTTH
T ss_pred cCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHcccccccchhcccchhHH
Confidence 999999999999999999999999999874 6889999999999999999998652
Q ss_pred -----HHHHHHHHHHhCCHHHHHHHHcCcChhHHHHHHHh
Q 042165 902 -----ERELIIEEILGHNEETLLTMMKDQFANYVVQKIFE 936 (983)
Q Consensus 902 -----eRk~IIkeLl~~~~e~L~~La~DqyGnyVLQkLLe 936 (983)
.++.|+..+. .++..|....||.+||.++..
T Consensus 345 ~~~~~~~~~l~~~i~----~~~~~l~~~~~Gk~i~~~l~~ 380 (382)
T 3v71_A 345 LLYSGWYEKMKQRVL----QHASRLERFSSGKKIIDSVMR 380 (382)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHTTSHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHH----HHHHHhhhCCchHHHHHHHHh
Confidence 2467777777 679999999999999987753
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=4.4e-35 Score=335.72 Aligned_cols=278 Identities=21% Similarity=0.318 Sum_probs=255.0
Q ss_pred hHhHHhhhcCccCCeeehhhhccC-CHHHHHHHHHHHHhc---hhhhhcccchhHHHHHHHhhcCH-------HHHHHHH
Q 042165 694 LPHASKLMTDVFGNYVIQKFFEYG-SPAQRKELANQLVGQ---ILPLSMQMYGCRVIQKALETIEI-------EQKAQLV 762 (983)
Q Consensus 694 ~~~i~~L~tD~yGshVVQKLLe~~-s~eqr~~Iie~L~g~---i~~La~h~yGSrVIQklLe~as~-------eqr~~Ll 762 (983)
.+++.++++|++|+++||++|+++ +++++..|++++.++ +.+|+.|.||++||||++++++. +++..|+
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~ 107 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLK 107 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHH
T ss_pred CCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHH
Confidence 689999999999999999999997 899999999999876 89999999999999999999999 9999999
Q ss_pred HHHhhccccccccccCccchhhhhhcCCchhHHHHHHHh--hhhhhhhccCCchhHHHHHHHHhcCCHHHHHHHHHHHH-
Q 042165 763 RELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIISAF--CGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEIL- 839 (983)
Q Consensus 763 ~EL~g~i~~L~kD~~GNhVLQk~Le~~~~e~~~~Ii~~~--k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl- 839 (983)
+.+.+++..|+.|++|++|||++|++.+.+.+..|++.+ .+++..|++|++|++|||+||+.+. ++.++.|++++.
T Consensus 108 ~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~-~~~~~~I~~~~~~ 186 (412)
T 3k62_A 108 NFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIP-LKNWEFIVDFVAT 186 (412)
T ss_dssp HHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSC-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCC-HHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999 7899999999999999999999985 667888999998
Q ss_pred -HHHHHHhhCcCccHHHHHHHhcCCch------------hHH----HHHHHHHHHHHhhccChhHHHHHHHHHHhCCHH-
Q 042165 840 -DNVCALAQDQYGNYVTQHVLQRGKPL------------ERS----KIIRKLSGHIVQLSQHKFASNVIEKCLAYGGPA- 901 (983)
Q Consensus 840 -~~l~~La~DqyGNyVVQ~LLe~~~~k------------~r~----~II~~L~g~~veLs~~K~GS~VVEk~L~~a~~k- 901 (983)
+++..|+.|+||++|||++|+++.+. +|. .+++.+..++..|++++||.+||+.||+.+.++
T Consensus 187 ~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~ 266 (412)
T 3k62_A 187 PEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAV 266 (412)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHH
T ss_pred chhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchh
Confidence 58999999999999999999988742 343 456677788899999999999999999998876
Q ss_pred HHHHHHHH-HHhCCHHHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHH-----------hHHHHhhCCCchHHHHH
Q 042165 902 ERELIIEE-ILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRT-----------HAHVLKKYTYGKHIVAR 969 (983)
Q Consensus 902 eRk~IIke-Ll~~~~e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~-----------~L~~L~~~~~Gk~Vv~r 969 (983)
.|+.|+.. |+ .++.+|++|+||+.||+|+|+.++++.|+.|+++|.. .+..|..++||..|+.+
T Consensus 267 ~r~~ii~~~l~----~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~ 342 (412)
T 3k62_A 267 YRECIIEKCLM----RNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQC 342 (412)
T ss_dssp HHHHHHHHHTT----TCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHHH
Confidence 47788874 66 4599999999999999999999999999999999985 48899999999999999
Q ss_pred HHHHhhc
Q 042165 970 FEMLIGE 976 (983)
Q Consensus 970 lekl~~~ 976 (983)
+...|.+
T Consensus 343 ~L~~~~~ 349 (412)
T 3k62_A 343 MLTICCD 349 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHccc
Confidence 9999965
No 11
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=87.48 E-value=39 Score=37.39 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=28.3
Q ss_pred cCccHHHHHHHhcCCchhHHHHHHHHHHHHHhhccChhHHHHHHHHHHh
Q 042165 849 QYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLAY 897 (983)
Q Consensus 849 qyGNyVVQ~LLe~~~~k~r~~II~~L~g~~veLs~~K~GS~VVEk~L~~ 897 (983)
.-|.-.+-.+|...+....+.|++.|...=.+ .+..|-+++|.+
T Consensus 197 ~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpe-----la~~Ir~~MF~F 240 (329)
T 3hjl_A 197 LEGTAVAAELLNTLDKETRELILQSIGQEDPL-----LEERIREKMFTF 240 (329)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHH-----HHHHHHHHHSCG
T ss_pred cccHHHHHHHHhcCChHHHHHHHHHHHHhCHH-----HHHHHHHHhcCH
Confidence 45566777788877777777788777765333 334555556655
No 12
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.33 E-value=55 Score=32.94 Aligned_cols=186 Identities=11% Similarity=0.010 Sum_probs=95.5
Q ss_pred CccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhcccc-ccccccCccc
Q 042165 703 DVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMR-CVRDQNGNHV 781 (983)
Q Consensus 703 D~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~-L~kD~~GNhV 781 (983)
+..|.-.+...+..+..+..+.+++. ....-..+..|...+..+......+....|++ +-.. -..+..|...
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~ 108 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS----KGADVNECDFYGFTA 108 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTCCBH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCcccCCH
Confidence 55666666666666666555555442 11112345566666666666555443333332 2111 2346677777
Q ss_pred hhhhhhcCCchhHHHHHHHhhhhhhh-------hccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHH--HHHHhhCcCcc
Q 042165 782 IQKCIECIPPEKIGFIISAFCGQVAA-------LSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDN--VCALAQDQYGN 852 (983)
Q Consensus 782 LQk~Le~~~~e~~~~Ii~~~k~~l~~-------Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~--l~~La~DqyGN 852 (983)
+...+.....+..+.+++.-..--.. -..+..|...+...+.... ..+++.|++. ...-..|..|.
T Consensus 109 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~~~~~~~~~~~~g~ 183 (285)
T 1wdy_A 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-----VEVLKILLDEMGADVNACDNMGR 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC-----HHHHHHHHHTSCCCTTCCCTTSC
T ss_pred HHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC-----HHHHHHHHHhcCCCCCccCCCCC
Confidence 77777776665555555431110000 0013445555555554432 1233333332 11123567788
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHhCCH
Q 042165 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQL-SQHKFASNVIEKCLAYGGP 900 (983)
Q Consensus 853 yVVQ~LLe~~~~k~r~~II~~L~g~~veL-s~~K~GS~VVEk~L~~a~~ 900 (983)
..+...+..+.......+++.|..+=..+ ..++.|.-.+..+...+..
T Consensus 184 t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 88888887777666667777776553322 2345565555555555443
No 13
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=63.52 E-value=1.6e+02 Score=31.54 Aligned_cols=153 Identities=11% Similarity=0.117 Sum_probs=74.8
Q ss_pred chhhhhhcCCchhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHhhCcCccHHHHHHH
Q 042165 781 VIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKH-QCQFIVDEILDNVCALAQDQYGNYVTQHVL 859 (983)
Q Consensus 781 VLQk~Le~~~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~-~~~~Li~eLl~~l~~La~DqyGNyVVQ~LL 859 (983)
|++++++. ...+++.+.+.-..+. +..++.++=.+++.+.+.+ ..+.-+.+++..+..++ --++|+..++
T Consensus 103 v~~~~L~~-----L~~l~~~l~~~~y~~~-~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~~~v~~~l~ 173 (266)
T 2of3_A 103 ALIKVLEL-----CKVIVELIRDTETPMS-QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTPMLL 173 (266)
T ss_dssp HHHHHHHH-----HHHHHHHHHHTTCCCC-HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHhccccch-HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CHHHHHHHHH
Confidence 66666665 3344444443211111 1124556666677766543 22222333333333332 2234455554
Q ss_pred h---cCCchhHHHHHHHHHHHHHhhccCh-hHH---HHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHcCcChhHHHH
Q 042165 860 Q---RGKPLERSKIIRKLSGHIVQLSQHK-FAS---NVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQ 932 (983)
Q Consensus 860 e---~~~~k~r~~II~~L~g~~veLs~~K-~GS---~VVEk~L~~a~~keRk~IIkeLl~~~~e~L~~La~DqyGnyVLQ 932 (983)
+ +.+.+.|.+.++.+..-+..--... -+- ..|.+++.-.+...|+.-++.+.. +...+ |.-|-
T Consensus 174 ~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve-----~y~~~----Gd~v~- 243 (266)
T 2of3_A 174 DALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA-----CFKFE----GDQMW- 243 (266)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHH-----HHHHH----TTHHH-
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHH-----HHHHh----hHHHH-
Confidence 4 4455666666655543333221111 122 335566666677778777766662 22333 33333
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042165 933 KIFELSSESQQAMMLSRIRT 952 (983)
Q Consensus 933 kLLe~~dd~~Rk~Ll~eLk~ 952 (983)
+.+....++.+..|-++++.
T Consensus 244 k~lg~L~~~~~~~l~er~~r 263 (266)
T 2of3_A 244 KAAGRMADKDKSLVEERIKR 263 (266)
T ss_dssp HHHCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhh
Confidence 34455677788888777764
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=60.09 E-value=71 Score=42.18 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=37.0
Q ss_pred CChhhhHHHHHHhcCcCccchHhhhhHHHHHhhcCCCccHHHHHhhhcCCHHHH
Q 042165 633 NDPKICNFLEELKSGKGRRFELSDITGHIVEFSADQHGSRFIQQKLENCSVDEK 686 (983)
Q Consensus 633 ~~~~rs~lLeeL~~~~~r~~~L~eIkG~VveLs~Dq~gSRVLQklLe~~s~Eqr 686 (983)
+++....|...|...+...+.+..|...+.+.-.-|.+..+|...|+...+|+-
T Consensus 525 ~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~ 578 (1630)
T 1xi4_A 525 SPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEG 578 (1630)
T ss_pred ChHHHHHHHHHHhcCCCCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhh
Confidence 344555666666555445566777777777777777788888888888776554
No 15
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=53.34 E-value=2.6e+02 Score=30.73 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=24.7
Q ss_pred cChhHHHHHHHhcCCHHHHHHHHHHHHHhHHHHh
Q 042165 925 QFANYVVQKIFELSSESQQAMMLSRIRTHAHVLK 958 (983)
Q Consensus 925 qyGnyVLQkLLe~~dd~~Rk~Ll~eLk~~L~~L~ 958 (983)
.-|.-.+-.+|...+....+.|++.|..+=++|+
T Consensus 197 ~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpela 230 (329)
T 3hjl_A 197 LEGTAVAAELLNTLDKETRELILQSIGQEDPLLE 230 (329)
T ss_dssp CCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHH
T ss_pred cccHHHHHHHHhcCChHHHHHHHHHHHHhCHHHH
Confidence 4577778888888888887778877776544444
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=52.59 E-value=2.1e+02 Score=32.65 Aligned_cols=273 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred hhcCCHHHHHHHHHH-HhHhHHhhhcCcc-----------CCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccc----
Q 042165 678 LENCSVDEKASVFKE-ILPHASKLMTDVF-----------GNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMY---- 741 (983)
Q Consensus 678 Le~~s~Eqr~~If~E-L~~~i~~L~tD~y-----------GshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~y---- 741 (983)
|-..+++-|..|++. ..+.++.++.+.. ....+..+.....+......+..+.+.+..|..+..
T Consensus 189 La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 268 (529)
T 3tpo_A 189 IAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 268 (529)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHH
Q ss_pred --hhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhh-----hhcCCchhHHHHHHH-hhhhhhhhccCCc
Q 042165 742 --GCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKC-----IECIPPEKIGFIISA-FCGQVAALSMHPY 813 (983)
Q Consensus 742 --GSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~-----Le~~~~e~~~~Ii~~-~k~~l~~Ls~hk~ 813 (983)
+|+.|..+...........+-..+.+.++.++.+.........+ |-...++....+++. ....+..+..+..
T Consensus 269 ~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~ 348 (529)
T 3tpo_A 269 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK 348 (529)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHH-HHHHHHHHhhCc------CccHHHHHHHhcCCchhHHHHHHH-HHHHHHhh
Q 042165 814 GCRVIQRVLE----HCADKHQCQFIVDE-ILDNVCALAQDQ------YGNYVTQHVLQRGKPLERSKIIRK-LSGHIVQL 881 (983)
Q Consensus 814 GS~VLQkiLe----~~~d~~~~~~Li~e-Ll~~l~~La~Dq------yGNyVVQ~LLe~~~~k~r~~II~~-L~g~~veL 881 (983)
.....+.+.- .+.....+..+++. ++..+..+..+. ...++|..+...++.+.+..+++. ..+.+++|
T Consensus 349 ~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~L 428 (529)
T 3tpo_A 349 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 428 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHH
Q ss_pred ccChhHHHHHHHHHHhCCHHHHHHHHHHHHhCCH-HHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHHhHHH
Q 042165 882 SQHKFASNVIEKCLAYGGPAERELIIEEILGHNE-ETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHV 956 (983)
Q Consensus 882 s~~K~GS~VVEk~L~~a~~keRk~IIkeLl~~~~-e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~~L~~ 956 (983)
...+. ..++..+++. ...|++.--...+ +.+..++....|--.|+.+..+-+++.+++-++.|..++..
T Consensus 429 L~~~d-~~i~~~~L~a-----L~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 429 LSAKD-TKIIQVILDA-----ISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp GGCSC-HHHHHHHHHH-----HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred hcCCC-HHHHHHHHHH-----HHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
No 17
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=52.18 E-value=91 Score=33.66 Aligned_cols=112 Identities=10% Similarity=0.110 Sum_probs=70.0
Q ss_pred hccCCHHHHHHHHHHHHhchhhh---hcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccc-cCccchhhhhhcC
Q 042165 714 FEYGSPAQRKELANQLVGQILPL---SMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ-NGNHVIQKCIECI 789 (983)
Q Consensus 714 Le~~s~eqr~~Iie~L~g~i~~L---a~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~-~GNhVLQk~Le~~ 789 (983)
++..+|+...+|-+.|...+..+ ....-|...+-.++..........|++.|...=..++..- .--++...++ ..
T Consensus 112 l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~iL~~L~~~dpelAe~Ir~~MF~FeDl~-~l 190 (279)
T 3pkr_A 112 LGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIV-KL 190 (279)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGGG-GS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChHHHHHHHHHHHhhCHHHHHHHHHhccCHHHHh-cC
Confidence 34467777777766666555433 3456677888899999998888888887765433332221 1223444444 44
Q ss_pred CchhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcC
Q 042165 790 PPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA 826 (983)
Q Consensus 790 ~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~ 826 (983)
++..++.|+..+-...+.++..-..-.+-+++|.+.+
T Consensus 191 ddr~iq~llreV~~~~L~~ALKGa~~elrekil~nmS 227 (279)
T 3pkr_A 191 DNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMS 227 (279)
T ss_dssp CHHHHHHHHHHSCHHHHHHHTTTSCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 6667777777776666666666555566677777665
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.04 E-value=98 Score=30.40 Aligned_cols=130 Identities=10% Similarity=0.074 Sum_probs=59.3
Q ss_pred cCCCccHHHHHhhhcCCHHHHHHHHHHHhHhH-HhhhcCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhH
Q 042165 666 ADQHGSRFIQQKLENCSVDEKASVFKEILPHA-SKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCR 744 (983)
Q Consensus 666 ~Dq~gSRVLQklLe~~s~Eqr~~If~EL~~~i-~~L~tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSr 744 (983)
.|.+|.-.|....+.+..+....+++.+...- .--..|..|.-.+...+..+..+..+.+++. ....-..+..|..
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t 81 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA---GASPMALDRHGQT 81 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCC
Confidence 34555556666666666666555555433221 1123455566666666666655544444431 1111223445555
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhhc-cccccccccCccchhhhhhcCCchhHHHHH
Q 042165 745 VIQKALETIEIEQKAQLVRELDGQ-VMRCVRDQNGNHVIQKCIECIPPEKIGFII 798 (983)
Q Consensus 745 VIQklLe~as~eqr~~Ll~EL~g~-i~~L~kD~~GNhVLQk~Le~~~~e~~~~Ii 798 (983)
.+..+......+....|++..... +..-..+..|...+..++.....+..+.++
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 136 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL 136 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHH
Confidence 555555554444333333321110 111233445555555555554444434333
No 19
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=50.97 E-value=1e+02 Score=36.00 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=84.5
Q ss_pred HHHhhcCCCccHHHH---HhhhcCCHHHHHHHHHHHhHhHHhhhcCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhh
Q 042165 661 IVEFSADQHGSRFIQ---QKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLS 737 (983)
Q Consensus 661 VveLs~Dq~gSRVLQ---klLe~~s~Eqr~~If~EL~~~i~~L~tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La 737 (983)
+..+|+|.+.+||.. ++|......++..|-+.|...+..=.+...+.... -|..+.+..|..+++-|..++..|-
T Consensus 89 Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~--~i~~~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 89 LPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFS--QILQGEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp GGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH--HHHHSCHHHHHHHHHHHHHHGGGSC
T ss_pred hHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHH--HHcccchHHHHHHHHHHHHHHhhcc
Confidence 666777777777654 55666677777776666654332211111111111 1112567788888888888887776
Q ss_pred cccchhH-------HHHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhh----------hcCCchhHHHHHHH
Q 042165 738 MQMYGCR-------VIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCI----------ECIPPEKIGFIISA 800 (983)
Q Consensus 738 ~h~yGSr-------VIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~L----------e~~~~e~~~~Ii~~ 800 (983)
..-+.-. .|.++++-.+.++...++.-| .-..++.+..|.--+-.++ ...+.+.++.++..
T Consensus 167 ~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL--~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 167 DEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL--SGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH--HTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHH--HhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 5554432 345555555666655554433 1123333322221111111 11345666777777
Q ss_pred hhhhhhhhccCCchhHHHHHHHH
Q 042165 801 FCGQVAALSMHPYGCRVIQRVLE 823 (983)
Q Consensus 801 ~k~~l~~Ls~hk~GS~VLQkiLe 823 (983)
+...+.-.+....++..+.-+.+
T Consensus 245 ~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 245 TRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp HHHHGGGCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHhccCCChHHHHHHHHH
Confidence 77666666666666665555544
No 20
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=49.92 E-value=64 Score=33.46 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=57.9
Q ss_pred hccCCHHHHHHHHHHHHhchhhhhcc----cchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccc-cCccchhhhhhc
Q 042165 714 FEYGSPAQRKELANQLVGQILPLSMQ----MYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQ-NGNHVIQKCIEC 788 (983)
Q Consensus 714 Le~~s~eqr~~Iie~L~g~i~~La~h----~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~-~GNhVLQk~Le~ 788 (983)
++..+++...+|-+.+...+...... .-|...+-.++..........+++.|...=..++..- .--++...++ .
T Consensus 54 l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN~~~~~~e~~il~~L~~~d~ela~~I~~~mF~Fedl~-~ 132 (216)
T 4fhr_B 54 LERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDIL-K 132 (216)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGGG-G
T ss_pred ccCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHcCChhHHHHHHHHHHhcCHHHHHHHHHHhcCHHHHh-C
Confidence 34567887777777777666544332 2366777788888888877777776644322221110 0112222222 2
Q ss_pred CCchhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcC
Q 042165 789 IPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCA 826 (983)
Q Consensus 789 ~~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~ 826 (983)
.++..++.|+..+-...+.++..-..-.+.+++|.+.+
T Consensus 133 ld~~~iq~llr~v~~~~L~~ALKga~~e~~e~il~nmS 170 (216)
T 4fhr_B 133 LDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMS 170 (216)
T ss_dssp SCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34444444444444444444443334445555555544
No 21
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=46.61 E-value=91 Score=33.44 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=75.3
Q ss_pred HhhhcCCHHHHHHHHHHHhH------hHHhhhcCccCCeeehhhhccCC---HHHHHHHHHH-HHhchhhhhcccchhHH
Q 042165 676 QKLENCSVDEKASVFKEILP------HASKLMTDVFGNYVIQKFFEYGS---PAQRKELANQ-LVGQILPLSMQMYGCRV 745 (983)
Q Consensus 676 klLe~~s~Eqr~~If~EL~~------~i~~L~tD~yGshVVQKLLe~~s---~eqr~~Iie~-L~g~i~~La~h~yGSrV 745 (983)
++|-.|+..|.+.+++++.= -+..+| +.++...+ -..-..+++. |-+++..| ..-++|+
T Consensus 42 ~~L~~~sp~q~e~lc~~L~l~~lsd~~l~~lc---------~~ll~ls~dlS~~~a~v~~~~l~LPkil~L--~~~ASR~ 110 (264)
T 2ilr_A 42 QLLHECSPSQMDLLCAQLQLPQLSDLGLLRLC---------TWLLALSPDLSLSNATVLTRSLFLGRILSL--TSSASRL 110 (264)
T ss_dssp HGGGGCCHHHHHHHHHHHTGGGCCHHHHHHHH---------HHHHHCSSCCCHHHHHHHHHHHHHHHHHHC--SSCCCHH
T ss_pred HHHHhCCHHHHHHHHHHHhhccCCHHHHHHHH---------HHHHcCCcchhhhhHHHHHHHHHHHHHHhc--cCcchhH
Confidence 45555999999999999852 233333 33444321 2233333333 35666666 6667787
Q ss_pred HHHHH-hhcCHHHHHHHHHHHhhccccccccccCc---cchhhhh--hcCCchhHHHHHHHhhhhhhhhccCCchhHHHH
Q 042165 746 IQKAL-ETIEIEQKAQLVRELDGQVMRCVRDQNGN---HVIQKCI--ECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQ 819 (983)
Q Consensus 746 IQklL-e~as~eqr~~Ll~EL~g~i~~L~kD~~GN---hVLQk~L--e~~~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQ 819 (983)
+..++ +++.. .-..+++.+...+.. ....|+ -+|.+++ ++.+++....++..+ .++..+..-..|+|
T Consensus 111 L~sal~~f~k~-~p~a~~~all~PLL~--~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~i----L~l~WtE~~~~Vlq 183 (264)
T 2ilr_A 111 LTTALTSFAAK-YTYPVCSALLDPVLQ--APGTGPAQTELLCCLVKMESLEPDAQVLMLGQI----LELPWKEETFLVLQ 183 (264)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHHHHHH--STTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHH----HHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHh-CcHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHH----HhccchHHHHHHHH
Confidence 66555 44432 222233332222211 111122 2445555 345555555444443 33444555566777
Q ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHHhh
Q 042165 820 RVLEH--CADKHQCQFIVDEILDNVCALAQ 847 (983)
Q Consensus 820 kiLe~--~~d~~~~~~Li~eLl~~l~~La~ 847 (983)
.+++. .-+.+....+++.+......+..
T Consensus 184 ~lL~~k~~L~~~~i~~Lv~~L~~~a~~~sk 213 (264)
T 2ilr_A 184 SLLERQVEMTPEKFSVLMEKLCKKGLAATT 213 (264)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHC-----CC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhHHhhc
Confidence 77773 33445566666666655444443
No 22
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=46.28 E-value=88 Score=31.85 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=39.3
Q ss_pred cCccchhhhhhcCCchhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHHH----HHHHHHHHHHHHHH-------
Q 042165 777 NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQC----QFIVDEILDNVCAL------- 845 (983)
Q Consensus 777 ~GNhVLQk~Le~~~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~----~~Li~eLl~~l~~L------- 845 (983)
+|...|.........+..+.+++.......--..+..|...|...+......... ..+++.|+..-..+
T Consensus 147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~ 226 (273)
T 2pnn_A 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE 226 (273)
T ss_dssp SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence 4666666666665555544444411000111133455665665555543321111 23333444433333
Q ss_pred -hhCcCccHHHHHHHhcCC
Q 042165 846 -AQDQYGNYVTQHVLQRGK 863 (983)
Q Consensus 846 -a~DqyGNyVVQ~LLe~~~ 863 (983)
..|..|.-.+......+.
T Consensus 227 ~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 227 EITNRKGLTPLALAASSGK 245 (273)
T ss_dssp GCCCTTSCCHHHHHHHTTC
T ss_pred cccCCCCCCHHHHHHHhCh
Confidence 356666666555555543
No 23
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.03 E-value=1.4e+02 Score=29.85 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=90.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHhHhHHh-----hhcCccCCeeehhhh---ccCCHHHHHHHHHHHHh--chhhh-----
Q 042165 672 RFIQQKLENCSVDEKASVFKEILPHASK-----LMTDVFGNYVIQKFF---EYGSPAQRKELANQLVG--QILPL----- 736 (983)
Q Consensus 672 RVLQklLe~~s~Eqr~~If~EL~~~i~~-----L~tD~yGshVVQKLL---e~~s~eqr~~Iie~L~g--~i~~L----- 736 (983)
..|-..++.++.+....+++.+..+-.. ...+.+|.-.+...+ +.+..+..+.|++.-.. .+..+
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 3344445555555555555544332222 223355666666554 44555555555554321 11111
Q ss_pred -hcccchhHHHHHHHhhcCHHHHHHHHHHHhhcccccccc--------------ccCccchhhhhhcCCchhHHHHHHHh
Q 042165 737 -SMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRD--------------QNGNHVIQKCIECIPPEKIGFIISAF 801 (983)
Q Consensus 737 -a~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD--------------~~GNhVLQk~Le~~~~e~~~~Ii~~~ 801 (983)
..+..|.-.+..+......+....|++. +.-+. ..+ .+|...+.........+..+.+++.-
T Consensus 87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 87 RDVYYRGQTALHIAIERRCKHYVELLVEK--GADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCSSEESBCHHHHHHHTTCHHHHHHHHHT--TCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhC--CCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 1223666666666666665443333331 11111 122 35766777666666655555555411
Q ss_pred hhhhhhhccCCchhHHHHHHHHhcCCHHHH----HHHHHHHHHHHHHH--------hhCcCccHHHHHHHhcCCch
Q 042165 802 CGQVAALSMHPYGCRVIQRVLEHCADKHQC----QFIVDEILDNVCAL--------AQDQYGNYVTQHVLQRGKPL 865 (983)
Q Consensus 802 k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~----~~Li~eLl~~l~~L--------a~DqyGNyVVQ~LLe~~~~k 865 (983)
.....--..+..|.-.+............. ..+++.|+..-..+ +.|..|.-.+......+..+
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 239 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence 001111134566666666665543321111 23444454443343 46777777777666665443
No 24
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=41.06 E-value=1.9e+02 Score=28.52 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHH-HHHHhCCHHHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhhCCCchH
Q 042165 887 ASNVIEKCLAYGGPAERELII-EEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKH 965 (983)
Q Consensus 887 GS~VVEk~L~~a~~keRk~II-keLl~~~~e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~~L~~L~~~~~Gk~ 965 (983)
+=.+++.|+..|.......|. ++++ +.|..|+... .+...+++|++-|..=......++.-..
T Consensus 72 AL~LLd~~vkNcG~~Fh~evas~~Fl----~el~~l~~~~------------~~~~Vk~kil~li~~W~~~f~~~~~l~~ 135 (163)
T 1x5b_A 72 ALTLLGACVANCGKIFHLEVCSRDFA----TEVRAVIKNK------------AHPKVCEKLKSLMVEWSEEFQKDPQFSL 135 (163)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTSHHHH----HHHHHHHHTT------------CCHHHHHHHHHHHHHHHHHTTTCSTTHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHH----HHHHHHHccC------------CCHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 346788888888877664444 4444 3344555432 3456777777766665556666655556
Q ss_pred HHHHHHHHhhcc
Q 042165 966 IVARFEMLIGEE 977 (983)
Q Consensus 966 Vv~rlekl~~~~ 977 (983)
|.+.-.+|..+|
T Consensus 136 i~~~Y~~Lk~~G 147 (163)
T 1x5b_A 136 ISATIKSMKEEG 147 (163)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcC
Confidence 666666665543
No 25
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=39.66 E-value=5.1e+02 Score=30.17 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=54.2
Q ss_pred CCchhHHHHHHHHHHHHHhhccChhH-------HHHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHcCcChhHHHHHH
Q 042165 862 GKPLERSKIIRKLSGHIVQLSQHKFA-------SNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKI 934 (983)
Q Consensus 862 ~~~k~r~~II~~L~g~~veLs~~K~G-------S~VVEk~L~~a~~keRk~IIkeLl~~~~e~L~~La~DqyGnyVLQkL 934 (983)
+.+..|.++++.|..++..|-..-.. ...+.++|.-.+.++...++. |++.. ++..+.-|.--|-.+
T Consensus 146 ~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~-lL~~l-----kl~~t~~g~qeLv~i 219 (507)
T 3u0r_A 146 GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMK-ILSGL-----KSLQTVSGRQQLVEL 219 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHH-HHHTS-----GGGSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHH-HHHhc-----ccccCchHHHHHHHH
Confidence 46677888888888887776554443 233444554456667766664 44332 233333333222222
Q ss_pred H----------hcCCHHHHHHHHHHHHHhHHHHhhCCCchHHHH
Q 042165 935 F----------ELSSESQQAMMLSRIRTHAHVLKKYTYGKHIVA 968 (983)
Q Consensus 935 L----------e~~dd~~Rk~Ll~eLk~~L~~L~~~~~Gk~Vv~ 968 (983)
+ +..|++.-++++..++..++-......+.+.+.
T Consensus 220 i~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~ 263 (507)
T 3u0r_A 220 VAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVT 263 (507)
T ss_dssp HHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHH
T ss_pred HHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHH
Confidence 2 224555556666666665555555555544433
No 26
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=39.14 E-value=1.8e+02 Score=28.10 Aligned_cols=93 Identities=9% Similarity=-0.023 Sum_probs=46.0
Q ss_pred hcCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccc-cccccccCc
Q 042165 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVM-RCVRDQNGN 779 (983)
Q Consensus 701 ~tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~-~L~kD~~GN 779 (983)
..+..|...+...+..+..+..+.|++.-. ...-..+..|...+..+......+....|++ .-. --..+..|.
T Consensus 53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~ 126 (223)
T 2f8y_A 53 IQDNMGRTPLHAAVSADAQGVFQILIRNRA--TDLDARMHDGTTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGK 126 (223)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHBTT--SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBCTTSC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCcHHHHHHHhCcHHHHHHHHH----cCCCCcCcCCCCC
Confidence 345666666666666666655555444211 1112234455555555555544433333222 211 123456677
Q ss_pred cchhhhhhcCCchhHHHHHH
Q 042165 780 HVIQKCIECIPPEKIGFIIS 799 (983)
Q Consensus 780 hVLQk~Le~~~~e~~~~Ii~ 799 (983)
..+..++.....+..+.+++
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~ 146 (223)
T 2f8y_A 127 SALHWAAAVNNVDAAVVLLK 146 (223)
T ss_dssp BHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHH
Confidence 77766666655555454444
No 27
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=38.23 E-value=1.7e+02 Score=31.43 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=91.2
Q ss_pred eehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhc---CHHHHHHHHHH-HhhccccccccccCccchh-
Q 042165 709 VIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETI---EIEQKAQLVRE-LDGQVMRCVRDQNGNHVIQ- 783 (983)
Q Consensus 709 VVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~a---s~eqr~~Ll~E-L~g~i~~L~kD~~GNhVLQ- 783 (983)
..-+++..|++.|.+.+.+++.=. .+.-... ...++.++... +-..-..+++. |.+++..+ ..-++.++.
T Consensus 39 ~~l~~L~~~sp~q~e~lc~~L~l~--~lsd~~l-~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L--~~~ASR~L~s 113 (264)
T 2ilr_A 39 VELQLLHECSPSQMDLLCAQLQLP--QLSDLGL-LRLCTWLLALSPDLSLSNATVLTRSLFLGRILSL--TSSASRLLTT 113 (264)
T ss_dssp HHHHGGGGCCHHHHHHHHHHHTGG--GCCHHHH-HHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC--SSCCCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc--cCCHHHH-HHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc--cCcchhHHHH
Confidence 455677779999999888887411 1111100 11223344322 23333444433 46666666 334455544
Q ss_pred hhhhcCCchhHHHHHHHhh-hhhhhhccCCchhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHhc
Q 042165 784 KCIECIPPEKIGFIISAFC-GQVAALSMHPYGCRVIQRVLE-HCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQR 861 (983)
Q Consensus 784 k~Le~~~~e~~~~Ii~~~k-~~l~~Ls~hk~GS~VLQkiLe-~~~d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe~ 861 (983)
.+++++ .+.-..+++.+. .-+..-...+.=+.+|.++++ .|-++..+..++..++ ++.-+..---|+|.+++.
T Consensus 114 al~~f~-k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE~~~~Vlq~lL~~ 188 (264)
T 2ilr_A 114 ALTSFA-AKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL----ELPWKEETFLVLQSLLER 188 (264)
T ss_dssp HHHHHH-HHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCHHHHHHHHHHHTT
T ss_pred HHHHHH-HhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hccchHHHHHHHHHHHhc
Confidence 343433 233333444322 333332334445688889998 7777777666666664 344455555688899885
Q ss_pred C---CchhHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 042165 862 G---KPLERSKIIRKLSGHIVQLSQHKFASNVIEKCLA 896 (983)
Q Consensus 862 ~---~~k~r~~II~~L~g~~veLs~~K~GS~VVEk~L~ 896 (983)
. +++....++..|.+....++.+.--++++..++.
T Consensus 189 k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~it 226 (264)
T 2ilr_A 189 QVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVMT 226 (264)
T ss_dssp CCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHHH
Confidence 4 3445555666666555555555444444444443
No 28
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=37.00 E-value=1.6e+02 Score=31.80 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=47.9
Q ss_pred hhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhhhcCCch
Q 042165 713 FFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPE 792 (983)
Q Consensus 713 LLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~~~~e 792 (983)
.|+..++++...++..=.+++..+....--...--.+|...+.+.+..++..+- -++..+++
T Consensus 57 ~L~~~dp~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~Ria------------------~l~~v~p~ 118 (279)
T 3pkr_A 57 YLGKIKPQQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMA------------------NLGEISPQ 118 (279)
T ss_dssp GGGGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHH------------------TCCCCCHH
T ss_pred HHhCCCHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHH------------------ccCCCCHH
Confidence 556667777666665444454444333222222223333333333333332211 01223344
Q ss_pred hHHHHHHHhhhhhhhh---ccCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q 042165 793 KIGFIISAFCGQVAAL---SMHPYGCRVIQRVLEHCADKHQCQFIVDEIL 839 (983)
Q Consensus 793 ~~~~Ii~~~k~~l~~L---s~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl 839 (983)
..+.|-+.+...+..+ ....-|...+-.+|.... ....+.|++.|.
T Consensus 119 ~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d-~~~e~~iL~~L~ 167 (279)
T 3pkr_A 119 VVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLG-QKSAKTTLARIE 167 (279)
T ss_dssp HHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCC-hHHHHHHHHHHH
Confidence 4444444343333322 233445677777777764 334445555544
No 29
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.96 E-value=2e+02 Score=28.12 Aligned_cols=187 Identities=14% Similarity=0.063 Sum_probs=100.5
Q ss_pred hcCccCCeeehhhhccCCHHHHHHHHHHHHhch-hhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCc
Q 042165 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQI-LPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGN 779 (983)
Q Consensus 701 ~tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i-~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GN 779 (983)
.+|..|.-.+...+..+..+..+.+++.+...- .--..+..|.-.+..++.....+....|++. ..-.-..+..|.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~ 80 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA---GASPMALDRHGQ 80 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCC
Confidence 357788888888888888888888887654322 2223566677777777776665544433331 112224567788
Q ss_pred cchhhhhhcCCchhHHHHHHHhhhhhhh-hccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-hhC-cCccHHHH
Q 042165 780 HVIQKCIECIPPEKIGFIISAFCGQVAA-LSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCAL-AQD-QYGNYVTQ 856 (983)
Q Consensus 780 hVLQk~Le~~~~e~~~~Ii~~~k~~l~~-Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~L-a~D-qyGNyVVQ 856 (983)
..+..++.....+..+.+++.....-.. -..+..|...+...+.... ..+++.+++.-..+ ..+ ..|...+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLI 155 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHH
Confidence 8888888877777766666654321111 1234556555655554432 23344443332111 123 56776776
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHhCC
Q 042165 857 HVLQRGKPLERSKIIRKLSGHIVQL-SQHKFASNVIEKCLAYGG 899 (983)
Q Consensus 857 ~LLe~~~~k~r~~II~~L~g~~veL-s~~K~GS~VVEk~L~~a~ 899 (983)
..+..+.. ++++.|..+=..+ ..+..|.-.+..+...+.
T Consensus 156 ~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 195 (241)
T 1k1a_A 156 HAVENNSL----SMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195 (241)
T ss_dssp HHHHTTCH----HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC
T ss_pred HHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 66665543 3444444331111 234455445544444443
No 30
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.74 E-value=1.6e+02 Score=29.53 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=75.7
Q ss_pred cCccCCeeehhhhcc---CCHHHHHHHHHHHHhc--hhhh------hcccchhHHHHHHHhhcCHHHHHHHHHHHhhccc
Q 042165 702 TDVFGNYVIQKFFEY---GSPAQRKELANQLVGQ--ILPL------SMQMYGCRVIQKALETIEIEQKAQLVRELDGQVM 770 (983)
Q Consensus 702 tD~yGshVVQKLLe~---~s~eqr~~Iie~L~g~--i~~L------a~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~ 770 (983)
.|..|.-.+...... +..+..+.|++.-... +..+ ..+..|.-.+..+......+....|++. +.-+
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~ 116 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADV 116 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence 466777766666655 5555555555432110 1000 0124566666666666555433333332 1111
Q ss_pred cccccc-------------cCccchhhhhhcCCchhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHH----HHH
Q 042165 771 RCVRDQ-------------NGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQ----CQF 833 (983)
Q Consensus 771 ~L~kD~-------------~GNhVLQk~Le~~~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~----~~~ 833 (983)
. ..+. +|...+...+.....+..+.+++.......--..+..|.-.+...+........ ...
T Consensus 117 ~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 117 H-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp T-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred C-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 1 1222 377677766666655555555542100111113455666666655552221111 112
Q ss_pred HHHHHHHHHHHH--------hhCcCccHHHHHHHhcCCch
Q 042165 834 IVDEILDNVCAL--------AQDQYGNYVTQHVLQRGKPL 865 (983)
Q Consensus 834 Li~eLl~~l~~L--------a~DqyGNyVVQ~LLe~~~~k 865 (983)
+++.|+..-..+ +.|..|.-.+....+.+..+
T Consensus 196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 235 (256)
T 2etb_A 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE 235 (256)
T ss_dssp HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHH
Confidence 444444443333 46677777776666665443
No 31
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=36.11 E-value=56 Score=34.38 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=10.8
Q ss_pred HhhhcCCHHHHHHHHHHHhH
Q 042165 676 QKLENCSVDEKASVFKEILP 695 (983)
Q Consensus 676 klLe~~s~Eqr~~If~EL~~ 695 (983)
.+|+..+.+++..||..+-+
T Consensus 38 ~~l~~L~~~~~~~v~~~l~~ 57 (278)
T 2yvy_A 38 ALWDELKGEHRYVVLTLLPK 57 (278)
T ss_dssp HGGGGSCHHHHHHHHHHSCH
T ss_pred HHHHhCCHHHHHHHHHhCCh
Confidence 34555555566666655443
No 32
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=34.85 E-value=4.2e+02 Score=29.62 Aligned_cols=8 Identities=0% Similarity=0.048 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 042165 853 YVTQHVLQ 860 (983)
Q Consensus 853 yVVQ~LLe 860 (983)
+++..++.
T Consensus 441 ~l~~~l~~ 448 (588)
T 1b3u_A 441 KLNSLCMA 448 (588)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 33
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=33.18 E-value=3e+02 Score=30.86 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=5.2
Q ss_pred hHHHHHHhcC
Q 042165 638 CNFLEELKSG 647 (983)
Q Consensus 638 s~lLeeL~~~ 647 (983)
..+++.+.+.
T Consensus 13 ~~l~~~l~s~ 22 (588)
T 1b3u_A 13 AVLIDELRNE 22 (588)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHhhcc
Confidence 4455666543
No 34
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=30.46 E-value=7.4e+02 Score=29.26 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHHh-----hCCCchHHHHHHHHHhhc
Q 042165 942 QQAMMLSRIRTHAHVLK-----KYTYGKHIVARFEMLIGE 976 (983)
Q Consensus 942 ~Rk~Ll~eLk~~L~~L~-----~~~~Gk~Vv~rlekl~~~ 976 (983)
.|+.+++.+...+..+. ..+|-..|+..+.+++.+
T Consensus 750 vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d 789 (861)
T 2bpt_A 750 VLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAED 789 (861)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcC
Confidence 45556666555554443 334666777777777654
No 35
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.25 E-value=2.4e+02 Score=26.65 Aligned_cols=94 Identities=11% Similarity=-0.017 Sum_probs=44.6
Q ss_pred cCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccc
Q 042165 702 TDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHV 781 (983)
Q Consensus 702 tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhV 781 (983)
.|..|.-.+...+..+..+..+.|++. ....-..+..|...+..+......+....|++. .....-..+..|...
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~ 109 (201)
T 3hra_A 35 VDTEGNTPLNIAVHNNDIEIAKALIDR---GADINLQNSISDSPYLYAGAQGRTEILAYMLKH--ATPDLNKHNRYGGNA 109 (201)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--SCCCTTCCCTTSCCS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc--cCcccccccCCCCcH
Confidence 355566566555555555544444432 111112344555555555555554433333322 111122345566666
Q ss_pred hhhhhhcCCchhHHHHHHH
Q 042165 782 IQKCIECIPPEKIGFIISA 800 (983)
Q Consensus 782 LQk~Le~~~~e~~~~Ii~~ 800 (983)
+.........+..+.+++.
T Consensus 110 L~~A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLED 128 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 6666666555554554443
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=29.38 E-value=4.8e+02 Score=26.76 Aligned_cols=128 Identities=13% Similarity=0.205 Sum_probs=64.2
Q ss_pred CchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh--C-----cCccHHHHHHHh---cCCchhHHHHHHHHHHHHHhh
Q 042165 812 PYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQ--D-----QYGNYVTQHVLQ---RGKPLERSKIIRKLSGHIVQL 881 (983)
Q Consensus 812 k~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La~--D-----qyGNyVVQ~LLe---~~~~k~r~~II~~L~g~~veL 881 (983)
+|...++-.+|+...+.. ..+.+.+...+..++. + .|=..++..++. +.++..|...+..|..-+...
T Consensus 100 ~y~~~llp~ll~~l~dkk--~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKK--PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 566677778888776543 2233333333333332 1 123345555554 334555665555554444332
Q ss_pred cc--Chh-------HHHHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHH
Q 042165 882 SQ--HKF-------ASNVIEKCLAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRI 950 (983)
Q Consensus 882 s~--~K~-------GS~VVEk~L~~a~~keRk~IIkeLl~~~~e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eL 950 (983)
-. .++ =-.++.+|++-.+...|+.-++.|. .| ..-.|+-.+...+...|+..+++|-+.+
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~--------~i-~~~vG~~~~~p~l~~Ld~~k~~ki~~~~ 246 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA--------IL-IKIFGMNTFVKTLEHLDNLKRKKIEETV 246 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH--------HH-HHHHCSGGGHHHHHHSCHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--------HH-HHHhCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 111 1223445555555556665554443 22 2334555566777777877777765544
No 37
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.83 E-value=2.7e+02 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=28.9
Q ss_pred hhCcCccHHHHHHHhcCCchhHHHHHHHHHHHHHh-------hccChhHHHHHHHHHHhCC
Q 042165 846 AQDQYGNYVTQHVLQRGKPLERSKIIRKLSGHIVQ-------LSQHKFASNVIEKCLAYGG 899 (983)
Q Consensus 846 a~DqyGNyVVQ~LLe~~~~k~r~~II~~L~g~~ve-------Ls~~K~GS~VVEk~L~~a~ 899 (983)
+.|..|.-.+...+..+..+....+++.|..+-.. -..++.|.-.+..+...+.
T Consensus 149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~ 209 (232)
T 2rfa_A 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209 (232)
T ss_dssp CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence 35667777777777666555544555555543221 1445555555555444443
No 38
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=26.55 E-value=8.5e+02 Score=28.71 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=6.0
Q ss_pred HHHHHHHHHhh
Q 042165 965 HIVARFEMLIG 975 (983)
Q Consensus 965 ~Vv~rlekl~~ 975 (983)
.++..+.+.+.
T Consensus 825 ~~~~~ll~~l~ 835 (861)
T 2bpt_A 825 DWVIDYIKRTR 835 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555554
No 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.95 E-value=3.3e+02 Score=26.21 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=46.7
Q ss_pred cCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhc---cccccccccC
Q 042165 702 TDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQ---VMRCVRDQNG 778 (983)
Q Consensus 702 tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~---i~~L~kD~~G 778 (983)
.+..|.-.+...+..+..+..+.+++.-..--.....+..|...+..+......+ +++.|... ...-..+..|
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g 107 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE----VVKSLYDRPLKPDLNKITNQG 107 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHH----HHHHHHSSSSCCCTTCCCTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCcccccCCcCC
Confidence 5677777777777666665555554432111111114455655555555554433 33433332 1122345556
Q ss_pred ccchhhhhhcCCchhHHHHHH
Q 042165 779 NHVIQKCIECIPPEKIGFIIS 799 (983)
Q Consensus 779 NhVLQk~Le~~~~e~~~~Ii~ 799 (983)
...+..++.....+..+.+++
T Consensus 108 ~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 108 VTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHcCCHhHHHHHHH
Confidence 666666665555444444443
No 40
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=25.25 E-value=5.2e+02 Score=25.74 Aligned_cols=129 Identities=12% Similarity=0.157 Sum_probs=59.2
Q ss_pred CchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCcCccHHHHHHHh---cCCchhHHHHHHHHHHHHHhhccC----
Q 042165 812 PYGCRVIQRVLEHCADKHQCQFIVDEILDNVCALAQDQYGNYVTQHVLQ---RGKPLERSKIIRKLSGHIVQLSQH---- 884 (983)
Q Consensus 812 k~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~La~DqyGNyVVQ~LLe---~~~~k~r~~II~~L~g~~veLs~~---- 884 (983)
+|...++..+++...++. ..+.+.....+..++....-..++..++. +.++..|..++..|..-+.....+
T Consensus 94 ~~~~~ilp~ll~~l~d~~--~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKK--PNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp HHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 455566667777665533 22233333333333333222334444444 334445555555554333222111
Q ss_pred hhHHHHHHHH---HHhCCHHHHHHHHHHHHhCCHHHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHH
Q 042165 885 KFASNVIEKC---LAYGGPAERELIIEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIR 951 (983)
Q Consensus 885 K~GS~VVEk~---L~~a~~keRk~IIkeLl~~~~e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk 951 (983)
.+=..++..+ ++-...+.|+..++.|. .|+ ...|+-++..++...++..+++|.+.+.
T Consensus 172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~--------~l~-~~vg~~~~~~~l~~L~~~~~~~i~~~~~ 232 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALG--------TLI-KLMGDKAVTPLLADVDPLKMAKIKECQE 232 (242)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHH--------HHH-HHHCHHHHGGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHH--------HHH-HHcCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1222333333 33344556665555443 122 2235556666676667766666655544
No 41
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.25 E-value=2.7e+02 Score=26.81 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=41.8
Q ss_pred cCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccc
Q 042165 702 TDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHV 781 (983)
Q Consensus 702 tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhV 781 (983)
.+..|.-.+...+..+..+..+.+++. +.........+|...+..++.....+....|++. ....-..+..|...
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 38 PDKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY---GADPSLIDGEGCSC 112 (240)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCH
T ss_pred CCCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCH
Confidence 455666666666666655554444432 1111122233344455555544443322222211 11111235556666
Q ss_pred hhhhhhcCCchhHHHHHH
Q 042165 782 IQKCIECIPPEKIGFIIS 799 (983)
Q Consensus 782 LQk~Le~~~~e~~~~Ii~ 799 (983)
+..++.....+..+.+++
T Consensus 113 l~~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 113 IHLAAQFGHTSIVAYLIA 130 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHh
Confidence 666666555544444443
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.68 E-value=3.3e+02 Score=26.42 Aligned_cols=158 Identities=12% Similarity=0.063 Sum_probs=80.2
Q ss_pred cCccCCeeehhhhccCCHHHHHHHHHHHHhchhh--hhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccc-------
Q 042165 702 TDVFGNYVIQKFFEYGSPAQRKELANQLVGQILP--LSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRC------- 772 (983)
Q Consensus 702 tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~--La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L------- 772 (983)
+|..|.-.+......+..+..+.|++.-..-... -..+..|...+..+......+....|++. +.-...
T Consensus 33 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~ 110 (232)
T 2rfa_A 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR--GASVSARATGSVF 110 (232)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGG
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC--CCCCCcccCCcce
Confidence 4666777777677777666666555542211111 23445666666666666555433333332 110100
Q ss_pred -----cccccCccchhhhhhcCCchhHHHHHHHhhhhhhhhccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---
Q 042165 773 -----VRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALSMHPYGCRVIQRVLEHCADKHQCQFIVDEILDNVCA--- 844 (983)
Q Consensus 773 -----~kD~~GNhVLQk~Le~~~~e~~~~Ii~~~k~~l~~Ls~hk~GS~VLQkiLe~~~d~~~~~~Li~eLl~~l~~--- 844 (983)
..|..|...+.........+..+.+++.- ..--..+..|.-.+...+.... .+....+++.++..-..
T Consensus 111 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~d~~g~t~L~~A~~~~~-~~~~~~i~~~Ll~~g~~~~~ 186 (232)
T 2rfa_A 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG---ADIRAQDSLGNTVLHILILQPN-KTFACQMYNLLLSYDGGDHL 186 (232)
T ss_dssp SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHTCSC-HHHHHHHHHHHHHTTCSCSS
T ss_pred eecccccccCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHcCC-hHHHHHHHHHHHhcCCchhh
Confidence 01235777777777666665555555431 1112345667766766665543 22222333444332111
Q ss_pred ----HhhCcCccHHHHHHHhcCCch
Q 042165 845 ----LAQDQYGNYVTQHVLQRGKPL 865 (983)
Q Consensus 845 ----La~DqyGNyVVQ~LLe~~~~k 865 (983)
-..|..|...+....+.+..+
T Consensus 187 ~~~~~~~~~~g~tpl~~A~~~g~~~ 211 (232)
T 2rfa_A 187 KSLELVPNNQGLTPFKLAGVEGNIV 211 (232)
T ss_dssp CCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred hhhhccCCCCCCCHHHHHHHcCCHH
Confidence 256777877777777665443
No 43
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=24.62 E-value=3.1e+02 Score=26.40 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=39.7
Q ss_pred CccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCHHHHHHHHHHHhhccccccccccCccch
Q 042165 703 DVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVI 782 (983)
Q Consensus 703 D~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVL 782 (983)
|..|.-.+...+.++..+..+.+++. ....-..+..|...+..++.....+....|++. +....-..+..|...+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~g~t~L 96 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQILIRN--RATDLDARMHDGTTPL 96 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB--TTSCTTCCCTTCCCHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCcHH
Confidence 34444444444444444444444332 111112344555555555555444333322221 1111223455666666
Q ss_pred hhhhhcCCchhHHHHHH
Q 042165 783 QKCIECIPPEKIGFIIS 799 (983)
Q Consensus 783 Qk~Le~~~~e~~~~Ii~ 799 (983)
...+.....+..+.+++
T Consensus 97 ~~A~~~~~~~~~~~Ll~ 113 (223)
T 2f8y_A 97 ILAARLAVEGMLEDLIN 113 (223)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHH
Confidence 66666555544444444
No 44
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=24.55 E-value=2e+02 Score=29.78 Aligned_cols=51 Identities=12% Similarity=0.224 Sum_probs=24.7
Q ss_pred CCchhHHHHHHHhhhhhhhhccCC----chhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042165 789 IPPEKIGFIISAFCGQVAALSMHP----YGCRVIQRVLEHCADKHQCQFIVDEILD 840 (983)
Q Consensus 789 ~~~e~~~~Ii~~~k~~l~~Ls~hk----~GS~VLQkiLe~~~d~~~~~~Li~eLl~ 840 (983)
.+++..+.|-+.+...+....... -|...+-.+|.... ....+.+++.|..
T Consensus 57 v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN~~~-~~~e~~il~~L~~ 111 (216)
T 4fhr_B 57 TSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLD-RTTEKKIMDKLVQ 111 (216)
T ss_dssp CCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHHHSC-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHcCC-hhHHHHHHHHHHh
Confidence 345555555444544444333221 25566666777664 3344555555544
No 45
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.08 E-value=1.6e+02 Score=29.49 Aligned_cols=188 Identities=16% Similarity=0.090 Sum_probs=89.6
Q ss_pred ccCCeeehhhhccCCHHHHHHHHHHHHhchhhhh-----cccchhHHHHHHH---hhcCHHHHHHHHHHHh--hc-----
Q 042165 704 VFGNYVIQKFFEYGSPAQRKELANQLVGQILPLS-----MQMYGCRVIQKAL---ETIEIEQKAQLVRELD--GQ----- 768 (983)
Q Consensus 704 ~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La-----~h~yGSrVIQklL---e~as~eqr~~Ll~EL~--g~----- 768 (983)
+|+...+-..+..+..+..+.|++.+..+-..+. .+..|.-.+..+. .....+....|++.-. ..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 4444445555555555555555554433222221 2244666665555 2233332333332210 00
Q ss_pred -cccccccccCccchhhhhhcCCchhHHHHHHHhhhhhhhhc-cC--------------CchhHHHHHHHHhcCCHHHHH
Q 042165 769 -VMRCVRDQNGNHVIQKCIECIPPEKIGFIISAFCGQVAALS-MH--------------PYGCRVIQRVLEHCADKHQCQ 832 (983)
Q Consensus 769 -i~~L~kD~~GNhVLQk~Le~~~~e~~~~Ii~~~k~~l~~Ls-~h--------------k~GS~VLQkiLe~~~d~~~~~ 832 (983)
...-..|..|...+...+.....+..+.+++.- ..+- .+ .+|.-.|........ .
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-----~ 153 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG----ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ-----P 153 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC-----H
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCC----CCcCccccccccCcccccccccCCCCHHHHHHHcCC-----H
Confidence 111123447777787777777666666665531 1111 11 346555555544432 2
Q ss_pred HHHHHHHH---H-HHHHhhCcCccHHHHHHHhcCCch-----hHHHHHHHHHHHHHhh--------ccChhHHHHHHHHH
Q 042165 833 FIVDEILD---N-VCALAQDQYGNYVTQHVLQRGKPL-----ERSKIIRKLSGHIVQL--------SQHKFASNVIEKCL 895 (983)
Q Consensus 833 ~Li~eLl~---~-l~~La~DqyGNyVVQ~LLe~~~~k-----~r~~II~~L~g~~veL--------s~~K~GS~VVEk~L 895 (983)
.+++.|++ . ...-..|..|.-.+......+... ...++++.|..+=..+ ..++.|.-.+..+.
T Consensus 154 ~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence 34444444 1 111245778887777777654421 1135666665554444 45666655555555
Q ss_pred HhCCH
Q 042165 896 AYGGP 900 (983)
Q Consensus 896 ~~a~~ 900 (983)
..+..
T Consensus 234 ~~g~~ 238 (260)
T 3jxi_A 234 KTGKI 238 (260)
T ss_dssp HTTCH
T ss_pred HcCCH
Confidence 55443
No 46
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=23.70 E-value=6.9e+02 Score=26.64 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhhccChh------HHHHHHHHHHhC--CHHHHHHHHHHHH
Q 042165 853 YVTQHVLQRGKPLERSKIIRKLSGHIVQLSQHKF------ASNVIEKCLAYG--GPAERELIIEEIL 911 (983)
Q Consensus 853 yVVQ~LLe~~~~k~r~~II~~L~g~~veLs~~K~------GS~VVEk~L~~a--~~keRk~IIkeLl 911 (983)
+++..+++..+...+..+++.+.+.+++++.++. +-+++..+++-. +++...++++.|.
T Consensus 55 ~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~ 121 (265)
T 3b2a_A 55 VALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLV 121 (265)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5667777777778888888888888888887776 444554455432 4455555555554
No 47
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.99 E-value=6.5e+02 Score=25.71 Aligned_cols=126 Identities=9% Similarity=-0.012 Sum_probs=64.5
Q ss_pred cCCCccHHHHHhhhcCCHHHHHHHHHHHhHhHHhhhcCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHH
Q 042165 666 ADQHGSRFIQQKLENCSVDEKASVFKEILPHASKLMTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRV 745 (983)
Q Consensus 666 ~Dq~gSRVLQklLe~~s~Eqr~~If~EL~~~i~~L~tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrV 745 (983)
.+.++...|....+.++.+....++.+. ...--..|.+|.-.+......+..+..+.|++. + ..--..+..|...
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g-~~~~~~~~~g~t~ 94 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPL--NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--G-ADVHAKDKGGLVP 94 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTT--TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCTTCCCH
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhc--CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--C-CCCCccCCCCCcH
Confidence 3344444555555566655544444321 111123466777777777777776655555542 1 1112345566666
Q ss_pred HHHHHhhcCHHHHHHHHHHHhhccccccccccCccchhhhhhcCCchhHHHHHH
Q 042165 746 IQKALETIEIEQKAQLVRELDGQVMRCVRDQNGNHVIQKCIECIPPEKIGFIIS 799 (983)
Q Consensus 746 IQklLe~as~eqr~~Ll~EL~g~i~~L~kD~~GNhVLQk~Le~~~~e~~~~Ii~ 799 (983)
+..+......+....|++. ..---..+..|...+..++.....+..+.+++
T Consensus 95 L~~A~~~g~~~iv~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 95 LHNACSYGHYEVTELLLKH---GACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6666666554433333321 11112345667677777776666555555554
No 48
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.60 E-value=8.8e+02 Score=27.14 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHc--CcChhHHHHHHHhcC-------CHHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHH
Q 042165 918 LLTMMK--DQFANYVVQKIFELS-------SESQQAMMLSRIRTHAHVLKKYTYGKHIVARFEML 973 (983)
Q Consensus 918 L~~La~--DqyGnyVLQkLLe~~-------dd~~Rk~Ll~eLk~~L~~L~~~~~Gk~Vv~rlekl 973 (983)
|..|++ -+|.+.||..++... ...+.+.+-+.++-.+..|.+++-......++..+
T Consensus 251 La~Iak~RP~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~ 315 (386)
T 3o2t_A 251 LANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTL 315 (386)
T ss_dssp HHHHHHHSGGGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHH
Confidence 444443 347788887776431 11244566667777777777665555433444443
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.07 E-value=2.1e+02 Score=28.95 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=31.6
Q ss_pred hhCcCccHHHHHHHhcCCch-h----HHHHHHHHHHHHHhh--------ccChhHHHHHHHHHHhCCH
Q 042165 846 AQDQYGNYVTQHVLQRGKPL-E----RSKIIRKLSGHIVQL--------SQHKFASNVIEKCLAYGGP 900 (983)
Q Consensus 846 a~DqyGNyVVQ~LLe~~~~k-~----r~~II~~L~g~~veL--------s~~K~GS~VVEk~L~~a~~ 900 (983)
+.|..|...+...+..+... . ..++++.|..+=..+ ..++.|.-.+..+...+..
T Consensus 179 ~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence 46778888888877755421 1 134555665554444 3566666555555555443
No 50
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.73 E-value=3.6e+02 Score=27.68 Aligned_cols=52 Identities=8% Similarity=-0.189 Sum_probs=23.6
Q ss_pred hcCccCCeeehhhhccCCHHHHHHHHHHHHhchhhhhcccchhHHHHHHHhhcCH
Q 042165 701 MTDVFGNYVIQKFFEYGSPAQRKELANQLVGQILPLSMQMYGCRVIQKALETIEI 755 (983)
Q Consensus 701 ~tD~yGshVVQKLLe~~s~eqr~~Iie~L~g~i~~La~h~yGSrVIQklLe~as~ 755 (983)
.+|..|.-.+......+..+..+.|++. ....-..+..|...+..+......
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~t~L~~A~~~~~~ 138 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCVKILLKH---GAQVNGVTADWHTPLFNACVSGSW 138 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCHH
Confidence 3455566555555555555444444432 111112344454445444444433
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.42 E-value=2e+02 Score=28.66 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=16.1
Q ss_pred ccCccchhhhhhcCCchhHHHHHHH
Q 042165 776 QNGNHVIQKCIECIPPEKIGFIISA 800 (983)
Q Consensus 776 ~~GNhVLQk~Le~~~~e~~~~Ii~~ 800 (983)
..|...+...+.....+..+.+++.
T Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 88 YQGHSALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 4577777777777666655555553
No 52
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.40 E-value=5.5e+02 Score=24.31 Aligned_cols=73 Identities=8% Similarity=0.054 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCHHHHHHHH-HHHHhCCHHHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhhCCCchHH
Q 042165 888 SNVIEKCLAYGGPAERELII-EEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHI 966 (983)
Q Consensus 888 S~VVEk~L~~a~~keRk~II-keLl~~~~e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~~L~~L~~~~~Gk~V 966 (983)
-.+++.|...|.......|. ++++ +.|..++ ...+...+++|++-|..=....+.++.-..|
T Consensus 63 L~LLe~~vkNcG~~f~~evas~~Fl----~el~~l~-------------~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i 125 (140)
T 3ldz_A 63 LTLLGACVSNCGKIFHLEVCSRDFA----SEVSNVL-------------NKGHPKVCEKLKALMVEWTDEFKNDPQLSLI 125 (140)
T ss_dssp HHHHHHHHHHSCHHHHHHHSSHHHH----HHHHHHH-------------HHSCHHHHHHHHHHHHHHHHHHTTCGGGTHH
T ss_pred HHHHHHHHHhcCHHHHHHHhhHHHH----HHHHHHh-------------ccCCHHHHHHHHHHHHHHHHHhCCCCCchHH
Confidence 34777888777766543221 2222 2222232 3356778888888887766677777666667
Q ss_pred HHHHHHHhhcc
Q 042165 967 VARFEMLIGEE 977 (983)
Q Consensus 967 v~rlekl~~~~ 977 (983)
.+.-.+|..+|
T Consensus 126 ~~~Y~~Lk~~G 136 (140)
T 3ldz_A 126 SAMIKNLKEQG 136 (140)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 76666665544
No 53
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=20.05 E-value=5.5e+02 Score=24.81 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCHHHHHHH-HHHHHhCCHHHHHHHHcCcChhHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhhCCCchHH
Q 042165 888 SNVIEKCLAYGGPAERELI-IEEILGHNEETLLTMMKDQFANYVVQKIFELSSESQQAMMLSRIRTHAHVLKKYTYGKHI 966 (983)
Q Consensus 888 S~VVEk~L~~a~~keRk~I-IkeLl~~~~e~L~~La~DqyGnyVLQkLLe~~dd~~Rk~Ll~eLk~~L~~L~~~~~Gk~V 966 (983)
=.+++.|...|.......| -++++ +.|.+++.++|.. ...+...+++|++-|..=...+..++ .|
T Consensus 69 L~LLe~cvkNCG~~fh~eias~~Fl----~eL~kl~~~k~~~-------~~~~~~Vk~kil~li~~W~~~f~~~p---~i 134 (149)
T 3g2s_A 69 LTVLETCMKSCGKRFHDEVGKFRFL----NELIKVVSPKYLG-------SRTSEKVKNKILELLYSWTVGLPEEV---KI 134 (149)
T ss_dssp HHHHHHHHHHCCHHHHHHHTSHHHH----HHHHHHHCTTTTG-------GGSCHHHHHHHHHHHHHHHHHCTTCH---HH
T ss_pred HHHHHHHHHhcCHHHHHHHhhHHHH----HHHHHHHcccccC-------CCCCHHHHHHHHHHHHHHHHHhCCCc---hH
Confidence 3578888888887754433 33444 4466777776520 13456677777777766555554433 35
Q ss_pred HHHHHHHhhcc
Q 042165 967 VARFEMLIGEE 977 (983)
Q Consensus 967 v~rlekl~~~~ 977 (983)
.+.-++|..+|
T Consensus 135 ~~~Y~~Lk~~G 145 (149)
T 3g2s_A 135 AEAYQMLKKQG 145 (149)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCc
Confidence 55555555444
Done!