BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042168
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 37 NLPTWFIWPNLEFAQ------EEHKE-----PLIDLQGFISGDERATAEAIEHVRGACVN 85
++P +I P E EE KE P IDL+ S DE+ IE ++ A ++
Sbjct: 16 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 75
Query: 86 HGLFQVINHGVDASLLKAASEEIDSIFKLPLE--RKLGIPRKTGLPQGYSGGHAERFTKN 143
G+ +INHG+ A L++ + + F L +E K + TG QGY A +
Sbjct: 76 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 135
Query: 144 LTRNETF 150
L + F
Sbjct: 136 LEWEDYF 142
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 37 NLPTWFIWPNLEFAQ------EEHKE-----PLIDLQGFISGDERATAEAIEHVRGACVN 85
++P +I P E EE KE P IDL+ S DE+ IE ++ A ++
Sbjct: 17 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 76
Query: 86 HGLFQVINHGVDASLLKAASEEIDSIFKLPLE--RKLGIPRKTGLPQGYSGGHAERFTKN 143
G+ +INHG+ A L++ + + F L +E K + TG QGY A +
Sbjct: 77 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 136
Query: 144 LTRNETF 150
L + F
Sbjct: 137 LEWEDYF 143
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 37 NLPTWFIWPNLEFAQ------EEHKE-----PLIDLQGFISGDERATAEAIEHVRGACVN 85
++P +I P E EE KE P IDL+ S DE+ IE ++ A ++
Sbjct: 17 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 76
Query: 86 HGLFQVINHGVDASLLKAASEEIDSIFKLPLE--RKLGIPRKTGLPQGYSGGHAERFTKN 143
G+ +INHG+ A L + + + F L +E K + TG QGY A +
Sbjct: 77 WGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 136
Query: 144 LTRNETF 150
L + F
Sbjct: 137 LEWEDYF 143
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 57 PLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96
P+I L ++G ERA E ++ AC N G F+++NHG+
Sbjct: 5 PIISLDK-VNGVERAATX--EXIKDACENWGFFELVNHGI 41
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 57 PLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEI 108
P ID+ D+ A + + A + G F +NHG++ L ++E
Sbjct: 10 PKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEF 61
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 57 PLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEI 108
P ID+ D+ A + + A + G F +NHG++ L ++E
Sbjct: 10 PKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEF 61
>pdb|3EA6|A Chain A, Atomic Resolution Of Crystal Structure Of Sek
Length = 219
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 64 FISGDERATAEAIEHVRGACVN---HGLFQVIN-HGVDASLLKAASEEIDSIFKLPLERK 119
+I G AT E ++ R +N +G + I+ + V + ++EID + L+ +
Sbjct: 77 YIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEE 136
Query: 120 LGIPRKTGLPQGYSGGHAERF---------TKNLTRNETFTFDYY 155
I G +G GH +F T +L N+TF++D +
Sbjct: 137 YNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLF 181
>pdb|2NTS|A Chain A, Crystal Structure Of Sek-Hvb5.1
pdb|2NTT|A Chain A, Crystal Structure Of Sek
pdb|2NTT|B Chain B, Crystal Structure Of Sek
Length = 217
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 64 FISGDERATAEAIEHVRGACVN---HGLFQVIN-HGVDASLLKAASEEIDSIFKLPLERK 119
+I G AT E ++ R +N +G + I+ + V + ++EID + L+ +
Sbjct: 77 YIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEE 136
Query: 120 LGIPRKTGLPQGYSGGHAERF---------TKNLTRNETFTFDYY 155
I G +G GH +F T +L N+TF++D +
Sbjct: 137 YNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLF 181
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 57 PLIDLQGFISGDERATAEAIEHVRGACVNHGL--FQVINHG-VDASLLKAASEEIDSIFK 113
P +DL F++ AT A+ RG + F+ HG D L++A S +
Sbjct: 106 PFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALT---- 161
Query: 114 LPLERKLGIPRKTGLPQGYS 133
LG+P G+P+ Y+
Sbjct: 162 ------LGVPSSAGVPEEYA 175
>pdb|1OAH|A Chain A, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa).
pdb|1OAH|B Chain B, Cytochrome C Nitrite Reductase From Desulfovibrio
Desulfuricans Atcc 27774: The Relevance Of The Two
Calcium Sites In The Structure Of The Catalytic Subunit
(Nrfa)
Length = 519
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 128 LPQGYSGGHAERFTKNLTRNETFTFDYYENDAEPLVVDHFKSV 170
LP+G+ HA+ + KNL F ++Y E +D F ++
Sbjct: 88 LPKGFK--HAQPYLKNLWLGYPFMYEYNETRGHTYAIDDFLNI 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,595,491
Number of Sequences: 62578
Number of extensions: 224578
Number of successful extensions: 493
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 14
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)