Query 042168
Match_columns 179
No_of_seqs 190 out of 1255
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02276 gibberellin 20-oxidas 100.0 8.1E-31 1.8E-35 227.0 12.5 153 25-177 7-163 (361)
2 PF14226 DIOX_N: non-haem diox 100.0 9.7E-30 2.1E-34 186.3 7.0 114 56-174 1-116 (116)
3 PLN02758 oxidoreductase, 2OG-F 99.9 2.1E-27 4.5E-32 205.8 11.2 122 34-155 24-152 (361)
4 PLN02216 protein SRG1 99.9 8.5E-27 1.8E-31 201.7 10.4 120 34-155 25-150 (357)
5 PLN02254 gibberellin 3-beta-di 99.9 2.3E-26 4.9E-31 199.1 11.3 111 36-155 28-147 (358)
6 PLN02393 leucoanthocyanidin di 99.9 3.5E-26 7.6E-31 198.2 11.1 121 34-154 22-150 (362)
7 PLN03176 flavanone-3-hydroxyla 99.9 6.6E-26 1.4E-30 168.5 11.0 104 32-136 9-117 (120)
8 PLN02515 naringenin,2-oxogluta 99.9 7.9E-26 1.7E-30 195.7 10.3 119 34-153 11-134 (358)
9 PLN03178 leucoanthocyanidin di 99.9 4.8E-26 1E-30 197.2 8.8 120 34-153 15-147 (360)
10 PLN00417 oxidoreductase, 2OG-F 99.9 1E-24 2.3E-29 188.1 12.1 122 33-155 14-143 (348)
11 PTZ00273 oxidase reductase; Pr 99.9 7.5E-25 1.6E-29 186.9 10.9 103 53-155 3-108 (320)
12 PLN02947 oxidoreductase 99.9 1.7E-24 3.7E-29 188.4 11.2 119 34-155 35-164 (374)
13 KOG0143 Iron/ascorbate family 99.9 1E-24 2.2E-29 186.4 9.0 103 52-155 14-116 (322)
14 PLN02750 oxidoreductase, 2OG-F 99.9 4.5E-24 9.7E-29 183.9 11.8 115 36-155 2-121 (345)
15 PLN02904 oxidoreductase 99.9 5.8E-24 1.3E-28 184.1 10.4 118 34-153 23-148 (357)
16 PLN02912 oxidoreductase, 2OG-F 99.9 5.1E-24 1.1E-28 183.9 10.0 118 33-154 13-138 (348)
17 PLN02704 flavonol synthase 99.9 4.2E-23 9.2E-28 177.3 11.5 113 35-153 16-136 (335)
18 PLN02485 oxidoreductase 99.9 1.6E-23 3.5E-28 179.4 8.3 102 54-155 6-115 (329)
19 COG3491 PcbC Isopenicillin N s 99.9 1.4E-23 3E-28 175.9 6.8 105 53-157 3-109 (322)
20 PLN02639 oxidoreductase, 2OG-F 99.9 7E-23 1.5E-27 176.0 9.9 112 36-154 13-131 (337)
21 PLN03002 oxidoreductase, 2OG-F 99.9 3E-22 6.6E-27 171.8 10.1 114 53-173 12-131 (332)
22 PLN02997 flavonol synthase 99.9 1.9E-21 4.1E-26 166.5 10.1 93 52-154 29-121 (325)
23 PLN02299 1-aminocyclopropane-1 99.8 5.4E-21 1.2E-25 163.4 9.3 93 53-153 4-96 (321)
24 PLN02156 gibberellin 2-beta-di 99.8 3.1E-20 6.7E-25 159.6 11.1 91 53-155 24-114 (335)
25 PLN02403 aminocyclopropanecarb 99.8 5.3E-20 1.1E-24 156.3 9.1 92 55-155 2-93 (303)
26 PLN02365 2-oxoglutarate-depend 99.8 1.6E-19 3.4E-24 153.1 9.1 87 53-153 3-89 (300)
27 PLN02984 oxidoreductase, 2OG-F 99.8 2.2E-19 4.7E-24 154.7 9.6 92 53-154 36-137 (341)
28 PLN03001 oxidoreductase, 2OG-F 97.9 6.1E-06 1.3E-10 69.0 2.6 52 104-155 1-57 (262)
29 PF07350 DUF1479: Protein of u 76.8 2.5 5.5E-05 37.8 3.1 55 52-113 46-100 (416)
30 PRK08130 putative aldolase; Va 69.5 5.8 0.00013 31.8 3.4 36 55-96 127-162 (213)
31 PRK08333 L-fuculose phosphate 68.1 6.5 0.00014 30.8 3.4 36 55-96 120-155 (184)
32 PRK06755 hypothetical protein; 60.4 9.6 0.00021 30.8 3.1 36 55-96 136-171 (209)
33 COG1402 Uncharacterized protei 60.2 36 0.00078 28.4 6.5 44 70-113 86-132 (250)
34 PRK05874 L-fuculose-phosphate 59.0 14 0.00031 29.9 3.8 36 55-96 127-162 (217)
35 TIGR02409 carnitine_bodg gamma 53.4 21 0.00045 31.0 4.2 52 53-112 107-158 (366)
36 PF00596 Aldolase_II: Class II 52.6 11 0.00024 29.1 2.2 37 54-96 122-159 (184)
37 PRK08087 L-fuculose phosphate 52.5 18 0.00039 29.1 3.5 36 55-96 122-157 (215)
38 PRK06661 hypothetical protein; 50.9 21 0.00045 29.2 3.6 37 56-96 124-160 (231)
39 cd00398 Aldolase_II Class II A 50.8 15 0.00033 29.2 2.8 39 54-96 121-159 (209)
40 PRK06833 L-fuculose phosphate 49.6 18 0.00039 29.0 3.0 23 74-96 137-159 (214)
41 cd00379 Ribosomal_L10_P0 Ribos 47.2 60 0.0013 24.1 5.5 39 72-110 3-42 (155)
42 PRK03634 rhamnulose-1-phosphat 47.2 22 0.00048 29.8 3.3 36 55-96 179-214 (274)
43 TIGR03328 salvage_mtnB methylt 44.8 28 0.00061 27.4 3.4 35 55-96 126-163 (193)
44 PLN02433 uroporphyrinogen deca 43.4 63 0.0014 27.8 5.6 47 66-112 288-338 (345)
45 TIGR01086 fucA L-fuculose phos 42.3 25 0.00054 28.2 2.8 35 56-96 122-156 (214)
46 TIGR02624 rhamnu_1P_ald rhamnu 42.3 28 0.0006 29.2 3.1 36 55-96 177-212 (270)
47 PRK02289 4-oxalocrotonate taut 42.2 36 0.00078 21.4 3.0 29 57-85 2-30 (60)
48 PRK08193 araD L-ribulose-5-pho 41.1 41 0.00088 27.4 3.9 23 74-96 143-172 (231)
49 PRK05834 hypothetical protein; 40.0 40 0.00086 26.8 3.6 38 55-96 121-160 (194)
50 PRK06357 hypothetical protein; 39.6 39 0.00084 27.3 3.5 36 55-96 130-171 (216)
51 cd00491 4Oxalocrotonate_Tautom 39.4 40 0.00087 20.5 2.9 28 57-84 1-28 (58)
52 PRK06557 L-ribulose-5-phosphat 39.2 31 0.00068 27.7 2.9 36 55-96 130-167 (221)
53 PF09220 LA-virus_coat: L-A vi 38.5 36 0.00077 30.5 3.3 44 36-86 166-221 (436)
54 PF03460 NIR_SIR_ferr: Nitrite 38.3 47 0.001 21.2 3.2 37 74-110 24-68 (69)
55 PF07461 NADase_NGA: Nicotine 38.2 34 0.00074 30.1 3.1 51 36-96 372-424 (446)
56 TIGR03677 rpl7ae 50S ribosomal 37.9 1E+02 0.0022 22.4 5.2 47 53-111 67-116 (117)
57 COG3384 Aromatic ring-opening 37.8 83 0.0018 26.6 5.2 47 52-100 129-176 (268)
58 PRK08660 L-fuculose phosphate 37.3 39 0.00085 26.2 3.1 35 55-96 115-149 (181)
59 cd05797 Ribosomal_L10 Ribosoma 36.9 1.3E+02 0.0029 22.5 6.0 40 71-110 4-44 (157)
60 PF11243 DUF3045: Protein of u 36.7 28 0.00061 24.0 1.9 21 77-97 36-56 (89)
61 PF01361 Tautomerase: Tautomer 35.9 36 0.00079 21.1 2.3 29 57-85 1-29 (60)
62 PRK02220 4-oxalocrotonate taut 35.7 49 0.0011 20.5 2.9 28 57-84 2-29 (61)
63 TIGR02410 carnitine_TMLD trime 34.8 59 0.0013 28.2 4.1 52 54-112 99-150 (362)
64 PRK00099 rplJ 50S ribosomal pr 34.4 1.5E+02 0.0033 22.7 6.1 40 71-110 5-45 (172)
65 PRK00115 hemE uroporphyrinogen 34.4 1E+02 0.0022 26.4 5.5 45 67-111 296-344 (346)
66 PRK06754 mtnB methylthioribulo 33.2 43 0.00093 26.7 2.8 24 73-96 148-172 (208)
67 PRK09220 methylthioribulose-1- 33.0 45 0.00098 26.5 2.9 24 73-96 145-171 (204)
68 PF12368 DUF3650: Protein of u 32.8 21 0.00045 19.7 0.6 17 89-105 9-25 (28)
69 KOG4513 Phosphoglycerate mutas 31.7 48 0.001 29.7 3.0 29 71-99 433-463 (531)
70 PRK09553 tauD taurine dioxygen 30.2 1.2E+02 0.0025 25.2 5.0 52 54-114 14-65 (277)
71 TIGR00013 taut 4-oxalocrotonat 30.2 69 0.0015 19.9 2.9 28 57-84 1-29 (63)
72 cd05796 Ribosomal_P0_like Ribo 30.1 1.3E+02 0.0029 23.0 5.0 39 72-110 3-42 (163)
73 COG0244 RplJ Ribosomal protein 29.5 2E+02 0.0044 22.4 6.0 41 70-110 6-47 (175)
74 PRK00745 4-oxalocrotonate taut 28.9 78 0.0017 19.6 3.0 28 57-84 2-29 (62)
75 cd05795 Ribosomal_P0_L10e Ribo 28.6 1.6E+02 0.0035 22.8 5.3 39 72-110 3-42 (175)
76 PF01208 URO-D: Uroporphyrinog 28.6 1E+02 0.0022 26.0 4.5 45 67-111 293-343 (343)
77 PRK04175 rpl7ae 50S ribosomal 28.0 1.9E+02 0.0041 21.2 5.3 47 53-111 71-120 (122)
78 PRK06486 hypothetical protein; 28.0 58 0.0013 27.1 2.8 23 74-96 163-185 (262)
79 PRK06208 hypothetical protein; 27.8 59 0.0013 27.4 2.8 23 74-96 178-200 (274)
80 PF08823 PG_binding_2: Putativ 26.9 1.2E+02 0.0026 20.3 3.7 35 74-108 16-50 (74)
81 cd03308 CmuA_CmuC_like CmuA_Cm 26.8 97 0.0021 27.1 4.1 46 64-109 325-377 (378)
82 PF04914 DltD_C: DltD C-termin 26.7 78 0.0017 23.6 3.1 25 68-93 70-94 (130)
83 PRK07044 aldolase II superfami 26.6 87 0.0019 25.8 3.6 37 55-96 138-174 (252)
84 PRK04019 rplP0 acidic ribosoma 26.2 2.1E+02 0.0045 24.7 6.0 41 70-110 6-47 (330)
85 PF00586 AIRS: AIR synthase re 25.4 82 0.0018 21.4 2.8 26 69-94 70-95 (96)
86 PRK07490 hypothetical protein; 24.8 73 0.0016 26.1 2.8 23 74-96 147-169 (245)
87 PF01471 PG_binding_1: Putativ 24.7 99 0.0022 18.7 2.9 41 75-115 4-44 (57)
88 COG1010 CobJ Precorrin-3B meth 23.5 2E+02 0.0044 24.0 5.1 52 54-110 128-182 (249)
89 PF02668 TauD: Taurine catabol 23.1 1.5E+02 0.0033 23.3 4.4 30 74-103 24-53 (258)
90 PRK01964 4-oxalocrotonate taut 23.0 1.1E+02 0.0024 19.2 2.9 28 57-84 2-29 (64)
91 PRK15331 chaperone protein Sic 22.7 87 0.0019 24.5 2.7 41 72-113 9-49 (165)
92 cd03465 URO-D_like The URO-D _ 22.6 1.7E+02 0.0036 24.5 4.7 46 64-109 278-329 (330)
93 PF01791 DeoC: DeoC/LacD famil 22.3 54 0.0012 26.4 1.6 40 58-98 96-135 (236)
94 COG3113 Predicted NTP binding 22.0 1.9E+02 0.0042 20.7 4.1 45 55-101 40-84 (99)
95 KOG1602 Cis-prenyltransferase 21.6 1.3E+02 0.0028 25.5 3.6 50 74-123 67-123 (271)
96 PF00466 Ribosomal_L10: Riboso 20.5 2.9E+02 0.0063 18.8 6.5 41 71-111 5-46 (100)
97 KOG1654 Microtubule-associated 20.4 3.2E+02 0.0069 20.1 5.0 56 51-106 36-96 (116)
98 PF11074 DUF2779: Domain of un 20.1 1.8E+02 0.0039 21.6 3.9 33 70-102 55-88 (130)
No 1
>PLN02276 gibberellin 20-oxidase
Probab=99.97 E-value=8.1e-31 Score=227.04 Aligned_cols=153 Identities=54% Similarity=0.883 Sum_probs=123.3
Q ss_pred cccchhhhhhcCCCCCCccCCCCccC---CCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHH
Q 042168 25 IVFDYHKLQKQANLPTWFIWPNLEFA---QEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLL 101 (179)
Q Consensus 25 ~~~~~~~l~~~~~iP~~~v~p~~~~~---~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li 101 (179)
++++...+....+||..|+||.+++. .....||||||+.+.+++++.+.+++++|.+||++||||||+||||+.+++
T Consensus 7 ~~~~~~~~~~~~~vp~~~~~~~~~~p~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~ 86 (361)
T PLN02276 7 LVFDASVLQKQSNIPAQFIWPDEEKPSAAVPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALI 86 (361)
T ss_pred eeechHhhcCCCCCCHHhcCCccccCCCCCcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHH
Confidence 45666666666789999999998862 234689999999998777777888999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHccCCCCCCCCCCCCCCCCCCcCCCCCceeeeeeeec-CCCChhHHHHHHhhhhCcccCC
Q 042168 102 KAASEEIDSIFKLPLERKLGIPRKTGLPQGYSGGHAERFTKNLTRNETFTFDYY-ENDAEPLVVDHFKSVLGQDFEC 177 (179)
Q Consensus 102 ~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 177 (179)
+++++++++||+||.|+|+++.+.++..+||.+...+......||+|+|.++.. .......+.+++.+.||+++..
T Consensus 87 ~~~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 163 (361)
T PLN02276 87 RAAHEYMDAFFKLPLSEKQRAQRKPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQ 163 (361)
T ss_pred HHHHHHHHHHHcCCHHHHHhhccCCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHH
Confidence 999999999999999999998776667899988766555567899999999865 2211122345777788765543
No 2
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.96 E-value=9.7e-30 Score=186.31 Aligned_cols=114 Identities=26% Similarity=0.376 Sum_probs=95.2
Q ss_pred CceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCCCCC
Q 042168 56 EPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGYSGG 135 (179)
Q Consensus 56 iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY~~~ 135 (179)
||||||+. +...+.+++++|.+||++||||||+||||+.++++++++++++||+||.++|+++.+. +..+||.+.
T Consensus 1 iPvIDls~----~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~Gy~~~ 75 (116)
T PF14226_consen 1 IPVIDLSP----DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARS-PSYRGYSPP 75 (116)
T ss_dssp --EEEHGG----CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCC-TTCSEEEES
T ss_pred CCeEECCC----CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCC-CCCcccccC
Confidence 79999997 4678899999999999999999999999999999999999999999999999999554 578999998
Q ss_pred CCCCcCC-CCCceeeeeeeec-CCCChhHHHHHHhhhhCcc
Q 042168 136 HAERFTK-NLTRNETFTFDYY-ENDAEPLVVDHFKSVLGQD 174 (179)
Q Consensus 136 ~~~~~~~-~~dwkE~f~~~~~-~~~~~~~~~~~~~~~~~~~ 174 (179)
+.+.... ..||+|+|+++.. +.+.+.....+..|+||++
T Consensus 76 ~~~~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 76 GSESTDGGKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPDE 116 (116)
T ss_dssp EEECCTTCCCCSEEEEEEECC-STTCHHTGCTS-GGGS-TT
T ss_pred CccccCCCCCCceEEeEEECCCCccccccccccCCCCCCCC
Confidence 8776665 8999999999988 6554432335788999864
No 3
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.95 E-value=2.1e-27 Score=205.81 Aligned_cols=122 Identities=30% Similarity=0.460 Sum_probs=103.3
Q ss_pred hcCCCCCCccCCCCcc-C-C-----CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHH
Q 042168 34 KQANLPTWFIWPNLEF-A-Q-----EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASE 106 (179)
Q Consensus 34 ~~~~iP~~~v~p~~~~-~-~-----~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~ 106 (179)
+...||..|+||.+++ . . ....||||||+.+.+++..++++++++|++||++||||||+||||+.++++++++
T Consensus 24 ~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~ 103 (361)
T PLN02758 24 KPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEK 103 (361)
T ss_pred CCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHH
Confidence 4569999999999876 2 1 3457999999998876666677889999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHccCCCCCCCCCCCCCCCCCCcCCCCCceeeeeeeec
Q 042168 107 EIDSIFKLPLERKLGIPRKTGLPQGYSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 107 ~~~~FF~LP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
++++||+||.|+|+++...++..+||+.........+.||+|+|.++..
T Consensus 104 ~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~ 152 (361)
T PLN02758 104 VAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVE 152 (361)
T ss_pred HHHHHhcCCHHHHHHhcccCCCccccCcccccccccccCeeEEEEeecc
Confidence 9999999999999999876666789976554333556799999998754
No 4
>PLN02216 protein SRG1
Probab=99.94 E-value=8.5e-27 Score=201.71 Aligned_cols=120 Identities=23% Similarity=0.468 Sum_probs=99.4
Q ss_pred hcCCCCCCccCCCCccC--C--C--CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHH
Q 042168 34 KQANLPTWFIWPNLEFA--Q--E--EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEE 107 (179)
Q Consensus 34 ~~~~iP~~~v~p~~~~~--~--~--~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~ 107 (179)
+...||..||||.+++. . . ...||||||+.+.+++. +++++++|++||++||||||+||||+.+++++++++
T Consensus 25 ~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~--~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~ 102 (357)
T PLN02216 25 MITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTA--MDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSE 102 (357)
T ss_pred CCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCcc--HHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHH
Confidence 35689999999998862 1 1 24799999999876542 346899999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHccCCCCCCCCCCCCCCCCCCcCCCCCceeeeeeeec
Q 042168 108 IDSIFKLPLERKLGIPRKTGLPQGYSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 108 ~~~FF~LP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
+++||+||.|+|+++...++..+||+.........+.||+|+|.+...
T Consensus 103 ~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~ 150 (357)
T PLN02216 103 IQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQ 150 (357)
T ss_pred HHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeecc
Confidence 999999999999999776666789976654333556899999988654
No 5
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=99.94 E-value=2.3e-26 Score=199.12 Aligned_cols=111 Identities=30% Similarity=0.462 Sum_probs=93.7
Q ss_pred CCCCCCccCCCCcc--C-------CCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHH
Q 042168 36 ANLPTWFIWPNLEF--A-------QEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASE 106 (179)
Q Consensus 36 ~~iP~~~v~p~~~~--~-------~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~ 106 (179)
.+||.+||||.+++ . .....||||||+.. .++++|.+||++||||||+||||+.++++++++
T Consensus 28 ~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~---------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~ 98 (358)
T PLN02254 28 QTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDP---------NALTLIGHACETWGVFQVTNHGIPLSLLDDIES 98 (358)
T ss_pred ccCChhhcCChhhccCccccccccCcCCCCCeEeCCCH---------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHH
Confidence 37999999999775 2 12357999999741 368999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHccCCCCCCCCCCCCCCCCCCcCCCCCceeeeeeeec
Q 042168 107 EIDSIFKLPLERKLGIPRKTGLPQGYSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 107 ~~~~FF~LP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
++++||+||.|+|+++.+.++..+||+.........+.||+|+|.+...
T Consensus 99 ~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~ 147 (358)
T PLN02254 99 QTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGS 147 (358)
T ss_pred HHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecC
Confidence 9999999999999999776667789987665555567899999998643
No 6
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=99.93 E-value=3.5e-26 Score=198.19 Aligned_cols=121 Identities=27% Similarity=0.463 Sum_probs=101.4
Q ss_pred hcCCCCCCccCCCCccC--------CCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHH
Q 042168 34 KQANLPTWFIWPNLEFA--------QEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAAS 105 (179)
Q Consensus 34 ~~~~iP~~~v~p~~~~~--------~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~ 105 (179)
+..+||..||||..++. .....||||||+.+.++++..|.+++++|.+||++||||||+||||+.+++++++
T Consensus 22 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~ 101 (362)
T PLN02393 22 GLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAR 101 (362)
T ss_pred CCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHH
Confidence 34689999999998762 1446899999999988777778899999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHccCCCCCCCCCCCCCCCCCCcCCCCCceeeeeeee
Q 042168 106 EEIDSIFKLPLERKLGIPRKTGLPQGYSGGHAERFTKNLTRNETFTFDY 154 (179)
Q Consensus 106 ~~~~~FF~LP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~f~~~~ 154 (179)
+++++||+||.|+|+++...+...+||............||+|.|++..
T Consensus 102 ~~~~~FF~LP~eeK~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~ 150 (362)
T PLN02393 102 EAWREFFHLPLEVKQRYANSPATYEGYGSRLGVEKGAILDWSDYYFLHY 150 (362)
T ss_pred HHHHHHHcCCHHHHHhhhcccCcccccccccccccccccCchhheeeee
Confidence 9999999999999999987666678995332222234679999998764
No 7
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.93 E-value=6.6e-26 Score=168.55 Aligned_cols=104 Identities=28% Similarity=0.453 Sum_probs=88.8
Q ss_pred hhhcCCCCCCccCCCCccC-C----CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHH
Q 042168 32 LQKQANLPTWFIWPNLEFA-Q----EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASE 106 (179)
Q Consensus 32 l~~~~~iP~~~v~p~~~~~-~----~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~ 106 (179)
|.....||.+|+||..++. . ....||||||+.+.+++ ..+.+++++|++||++||||||+||||+.++++++++
T Consensus 9 l~~~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~-~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~ 87 (120)
T PLN03176 9 LAEEKTLQASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGG-EKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTT 87 (120)
T ss_pred HhccCCCCHhhcCChhhCcCccccccCCCCCeEECccccCCc-hHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHH
Confidence 3334689999999988762 1 13479999999987655 3567889999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHccCCCCCCCCCCCCCCC
Q 042168 107 EIDSIFKLPLERKLGIPRKTGLPQGYSGGH 136 (179)
Q Consensus 107 ~~~~FF~LP~e~K~~~~~~~~~~~GY~~~~ 136 (179)
.+++||+||.++|+++.+.++..+||+...
T Consensus 88 ~~~~FF~LP~e~K~k~~~~~~~~~gy~~~~ 117 (120)
T PLN03176 88 LAKEFFALPPEEKLRFDMSGGKKGGFIVSS 117 (120)
T ss_pred HHHHHHCCCHHHHHhcccCCCccCCcchhc
Confidence 999999999999999988777788996653
No 8
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=99.93 E-value=7.9e-26 Score=195.75 Aligned_cols=119 Identities=26% Similarity=0.350 Sum_probs=96.4
Q ss_pred hcCCCCCCccCCCCccC-----CCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHH
Q 042168 34 KQANLPTWFIWPNLEFA-----QEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEI 108 (179)
Q Consensus 34 ~~~~iP~~~v~p~~~~~-----~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~ 108 (179)
+...||.+|++|..++. .....||||||+.+..++ ..+.+++++|.+||++||||||+||||+.++++++++.+
T Consensus 11 ~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~-~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~ 89 (358)
T PLN02515 11 GESTLQSSFVRDEDERPKVAYNQFSDEIPVISLAGIDEVG-GRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLA 89 (358)
T ss_pred CCCcCCHHhcCCchhccCccccccCCCCCEEEChhccCCc-hHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHH
Confidence 44689999999987762 123479999999986543 457789999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHccCCCCCCCCCCCCCCCCCCcCCCCCceeeeeee
Q 042168 109 DSIFKLPLERKLGIPRKTGLPQGYSGGHAERFTKNLTRNETFTFD 153 (179)
Q Consensus 109 ~~FF~LP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~f~~~ 153 (179)
++||+||.|+|+++....+..+||.........+..||||.|.+.
T Consensus 90 ~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~ 134 (358)
T PLN02515 90 RDFFALPAEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYF 134 (358)
T ss_pred HHHhcCCHHHHhhhCcCCCCccCcccccccccccccCceeeeccc
Confidence 999999999999987655556899643322223457999999764
No 9
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=99.93 E-value=4.8e-26 Score=197.20 Aligned_cols=120 Identities=27% Similarity=0.444 Sum_probs=100.4
Q ss_pred hcCCCCCCccCCCCcc-CC----------CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHH
Q 042168 34 KQANLPTWFIWPNLEF-AQ----------EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLK 102 (179)
Q Consensus 34 ~~~~iP~~~v~p~~~~-~~----------~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~ 102 (179)
....||..|+||++++ .. ....||||||+.+.+++++.+.+++++|.+||++||||||+||||+.++++
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~ 94 (360)
T PLN03178 15 GVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLD 94 (360)
T ss_pred CCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHH
Confidence 3468999999999876 21 245799999999988777778899999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHccCCCCC--CCCCCCCCCCCCCcCCCCCceeeeeee
Q 042168 103 AASEEIDSIFKLPLERKLGIPRKT--GLPQGYSGGHAERFTKNLTRNETFTFD 153 (179)
Q Consensus 103 ~~~~~~~~FF~LP~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~dwkE~f~~~ 153 (179)
++++.+++||+||.|+|+++.... +..+||+........+..||+|+|.+.
T Consensus 95 ~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~ 147 (360)
T PLN03178 95 RVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHL 147 (360)
T ss_pred HHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccc
Confidence 999999999999999999987643 357899765443335567999987653
No 10
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.92 E-value=1e-24 Score=188.13 Aligned_cols=122 Identities=24% Similarity=0.351 Sum_probs=98.0
Q ss_pred hhcCCCCCCccCCCCcc----C----CCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHH
Q 042168 33 QKQANLPTWFIWPNLEF----A----QEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAA 104 (179)
Q Consensus 33 ~~~~~iP~~~v~p~~~~----~----~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~ 104 (179)
.....||..|+||..+. . .....||||||+.+.++++..+ +++++|++||++||||||+||||+.++++++
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~-~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~ 92 (348)
T PLN00417 14 AAGEGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGR-EELSKLHSALSTWGVVQVMNHGITEAFLDKI 92 (348)
T ss_pred hCCCCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHH-HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHH
Confidence 33458999999999884 1 1345899999999887665443 4568999999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHccCCCCCCCCCCCCCCCCCCcCCCCCceeeeeeeec
Q 042168 105 SEEIDSIFKLPLERKLGIPRKTGLPQGYSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 105 ~~~~~~FF~LP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
++++++||+||.|+|+++.+..+..+||+...........||+|.+++...
T Consensus 93 ~~~~~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~ 143 (348)
T PLN00417 93 YKLTKQFFALPTEEKQKCAREIGSIQGYGNDMILSDDQVLDWIDRLYLTTY 143 (348)
T ss_pred HHHHHHHHcCCHHHHHHhhcCCCCccccccccccccCCCcCccceeecccC
Confidence 999999999999999999876556789976432222456799999877543
No 11
>PTZ00273 oxidase reductase; Provisional
Probab=99.92 E-value=7.5e-25 Score=186.86 Aligned_cols=103 Identities=24% Similarity=0.467 Sum_probs=89.6
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCC-CCCCCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRK-TGLPQG 131 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~-~~~~~G 131 (179)
...||||||+.+.++++..+++++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ....+|
T Consensus 3 ~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~G 82 (320)
T PTZ00273 3 RASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRG 82 (320)
T ss_pred CCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCC
Confidence 4579999999998877777888999999999999999999999999999999999999999999999998654 456789
Q ss_pred CCCCCCCCc--CCCCCceeeeeeeec
Q 042168 132 YSGGHAERF--TKNLTRNETFTFDYY 155 (179)
Q Consensus 132 Y~~~~~~~~--~~~~dwkE~f~~~~~ 155 (179)
|.+.+.+.. ....||||+|+++..
T Consensus 83 Y~~~~~e~~~~~~~~d~kE~~~~~~~ 108 (320)
T PTZ00273 83 YGAFGAEQLDPSKPYDYKETFDMGCH 108 (320)
T ss_pred CCCccccccCCCCCCCccceEEeecc
Confidence 988765443 345799999999865
No 12
>PLN02947 oxidoreductase
Probab=99.91 E-value=1.7e-24 Score=188.38 Aligned_cols=119 Identities=21% Similarity=0.361 Sum_probs=95.8
Q ss_pred hcCCCCCCccCCCCcc-CC---------CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHH
Q 042168 34 KQANLPTWFIWPNLEF-AQ---------EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKA 103 (179)
Q Consensus 34 ~~~~iP~~~v~p~~~~-~~---------~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~ 103 (179)
+...||..||||.+++ .. ....||||||+.+.+ ..+.+++++|++||++||||||+||||+.+++++
T Consensus 35 ~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~---~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~ 111 (374)
T PLN02947 35 GITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRG---SNRPHVLATLAAACREYGFFQVVNHGVPSEVIGG 111 (374)
T ss_pred CCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCC---ccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHH
Confidence 3569999999998876 11 345799999998864 2356789999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHccCCCCC-CCCCCCCCCCCCCcCCCCCceeeeeeeec
Q 042168 104 ASEEIDSIFKLPLERKLGIPRKT-GLPQGYSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 104 ~~~~~~~FF~LP~e~K~~~~~~~-~~~~GY~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
+++.+++||+||.|+|+++.... ....||+...........+|+|.|.+...
T Consensus 112 ~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~ 164 (374)
T PLN02947 112 MIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCH 164 (374)
T ss_pred HHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecC
Confidence 99999999999999999986432 33467865443333456899999987643
No 13
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=99.91 E-value=1e-24 Score=186.43 Aligned_cols=103 Identities=35% Similarity=0.527 Sum_probs=90.2
Q ss_pred CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCC
Q 042168 52 EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQG 131 (179)
Q Consensus 52 ~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~G 131 (179)
....||||||+.+...++ .+..++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.+..+...|
T Consensus 14 ~~~~iPvIDls~~~~~~~-~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~g 92 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDP-GREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRG 92 (322)
T ss_pred cCCCcCeEECCCCCCcch-hHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCccc
Confidence 356799999998876555 6788999999999999999999999999999999999999999999999999987666799
Q ss_pred CCCCCCCCcCCCCCceeeeeeeec
Q 042168 132 YSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 132 Y~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
|+...........+|++++.+...
T Consensus 93 Y~~~~~~~~~~~~~w~d~~~~~~~ 116 (322)
T KOG0143|consen 93 YGTSFILSPLKELDWRDYLTLLSA 116 (322)
T ss_pred ccccccccccccccchhheeeecc
Confidence 988876544567899999986655
No 14
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.91 E-value=4.5e-24 Score=183.95 Aligned_cols=115 Identities=25% Similarity=0.354 Sum_probs=93.6
Q ss_pred CCCCCCccCCCCccC---C--CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHH
Q 042168 36 ANLPTWFIWPNLEFA---Q--EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDS 110 (179)
Q Consensus 36 ~~iP~~~v~p~~~~~---~--~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~ 110 (179)
..+|..|+||..++. . ....||||||+.+. ...+.+++++|.+||++||||||+||||+.++++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~---~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~ 78 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLTNSDEEIPVIDLSVST---SHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKE 78 (345)
T ss_pred CCCCHHHcCCchhccCccccccCCCCCeEECCCCC---cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 378899999887752 1 14579999999853 234677899999999999999999999999999999999999
Q ss_pred HhCCCHHHHccCCCCCCCCCCCCCCCCCCcCCCCCceeeeeeeec
Q 042168 111 IFKLPLERKLGIPRKTGLPQGYSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 111 FF~LP~e~K~~~~~~~~~~~GY~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
||+||.|+|+++.+.....+||.... ...+..||||+|++...
T Consensus 79 FF~LP~eeK~~~~~~~~~~~GY~~~~--~~~~~~d~kE~~~~~~~ 121 (345)
T PLN02750 79 FFDQTTEEKRKVKRDEVNPMGYHDSE--HTKNIRDWKEVFDFLVQ 121 (345)
T ss_pred HHcCCHHHHHhhccCCCCccCcCccc--ccccCCCceeEEEEeec
Confidence 99999999999976555567996432 22345699999999865
No 15
>PLN02904 oxidoreductase
Probab=99.90 E-value=5.8e-24 Score=184.07 Aligned_cols=118 Identities=22% Similarity=0.351 Sum_probs=92.5
Q ss_pred hcCCCCCCccCCCCccC-C------CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHH
Q 042168 34 KQANLPTWFIWPNLEFA-Q------EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASE 106 (179)
Q Consensus 34 ~~~~iP~~~v~p~~~~~-~------~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~ 106 (179)
+...||..||||.+++. . ....||||||+.+.+ +..+.+++++|++||++||||||+||||+.++++++++
T Consensus 23 ~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~--~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~ 100 (357)
T PLN02904 23 GVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHD--PLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALD 100 (357)
T ss_pred CCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCC--chhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHH
Confidence 34689999999998762 1 225799999998864 34677889999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHccCCCCC-CCCCCCCCCCCCCcCCCCCceeeeeee
Q 042168 107 EIDSIFKLPLERKLGIPRKT-GLPQGYSGGHAERFTKNLTRNETFTFD 153 (179)
Q Consensus 107 ~~~~FF~LP~e~K~~~~~~~-~~~~GY~~~~~~~~~~~~dwkE~f~~~ 153 (179)
++++||+||.|+|+++.... ....||+.........+.+|+|.+...
T Consensus 101 ~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~ 148 (357)
T PLN02904 101 AATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHY 148 (357)
T ss_pred HHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeec
Confidence 99999999999999986432 233466543322223456899987654
No 16
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.90 E-value=5.1e-24 Score=183.86 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=91.4
Q ss_pred hhcCCCCCCccCCCCccC-C-----CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHH
Q 042168 33 QKQANLPTWFIWPNLEFA-Q-----EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASE 106 (179)
Q Consensus 33 ~~~~~iP~~~v~p~~~~~-~-----~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~ 106 (179)
.+...||+.|+||.+++. . ...+||+|||+.+.+.+ +.+++++|++||++||||||+||||+.++++++++
T Consensus 13 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~---~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~ 89 (348)
T PLN02912 13 SVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPN---RADIINQFAHACSSYGFFQIKNHGVPEETIKKMMN 89 (348)
T ss_pred cCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcC---HHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHH
Confidence 345689999999987762 1 23579999999886433 56789999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHccCC-CCCCC-CCCCCCCCCCCcCCCCCceeeeeeee
Q 042168 107 EIDSIFKLPLERKLGIP-RKTGL-PQGYSGGHAERFTKNLTRNETFTFDY 154 (179)
Q Consensus 107 ~~~~FF~LP~e~K~~~~-~~~~~-~~GY~~~~~~~~~~~~dwkE~f~~~~ 154 (179)
++++||+||.|+|+++. ..+.. ..||...... .....+|+|.+.+..
T Consensus 90 ~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~ 138 (348)
T PLN02912 90 VAREFFHQSESERVKHYSADTKKTTRLSTSFNVS-KEKVSNWRDFLRLHC 138 (348)
T ss_pred HHHHHhcCCHHHHHhHhhcCCCCccccccccccc-ccccCCchheEEEee
Confidence 99999999999999954 33322 3344433221 234579999998763
No 17
>PLN02704 flavonol synthase
Probab=99.89 E-value=4.2e-23 Score=177.26 Aligned_cols=113 Identities=20% Similarity=0.295 Sum_probs=92.9
Q ss_pred cCCCCCCccCCCCcc-CC-----CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHH
Q 042168 35 QANLPTWFIWPNLEF-AQ-----EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEI 108 (179)
Q Consensus 35 ~~~iP~~~v~p~~~~-~~-----~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~ 108 (179)
..+||.+|+||+.++ .. ....||||||+.. .+++++++|.+||++||||||+||||+.++++++++++
T Consensus 16 ~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~ 89 (335)
T PLN02704 16 KETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDP------DEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVG 89 (335)
T ss_pred cCCCCHHHcCCcccccccccccccCCCCCeEECCCc------cHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHH
Confidence 458999999999886 21 3457999999863 13468899999999999999999999999999999999
Q ss_pred HHHhCCCHHHHccCCCCC--CCCCCCCCCCCCCcCCCCCceeeeeee
Q 042168 109 DSIFKLPLERKLGIPRKT--GLPQGYSGGHAERFTKNLTRNETFTFD 153 (179)
Q Consensus 109 ~~FF~LP~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~dwkE~f~~~ 153 (179)
++||+||.|+|+++.+.. ...+||............+|+|.+...
T Consensus 90 ~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~ 136 (335)
T PLN02704 90 KEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHR 136 (335)
T ss_pred HHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEee
Confidence 999999999999987643 346899776554445677899987654
No 18
>PLN02485 oxidoreductase
Probab=99.89 E-value=1.6e-23 Score=179.37 Aligned_cols=102 Identities=26% Similarity=0.406 Sum_probs=85.4
Q ss_pred CCCceeecCCCCCC--C-----hHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCC
Q 042168 54 HKEPLIDLQGFISG--D-----ERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKT 126 (179)
Q Consensus 54 ~~iPvIDl~~l~~~--~-----~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~ 126 (179)
..||||||+.|.++ + ...+.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++...+
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~ 85 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTP 85 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccC
Confidence 46999999998642 1 2346778999999999999999999999999999999999999999999999987543
Q ss_pred -CCCCCCCCCCCCCcCCCCCceeeeeeeec
Q 042168 127 -GLPQGYSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 127 -~~~~GY~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
...+||.+.+.+...+..||+|.|++...
T Consensus 86 ~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~ 115 (329)
T PLN02485 86 AAGYRGYQRIGENVTKGKPDMHEAIDCYRE 115 (329)
T ss_pred CCCCCCcccccccccCCCCCcchhhhhccc
Confidence 45689987765444566899999988754
No 19
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=99.89 E-value=1.4e-23 Score=175.92 Aligned_cols=105 Identities=29% Similarity=0.447 Sum_probs=96.3
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCC-CCCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTG-LPQG 131 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~-~~~G 131 (179)
...||+|||+.+...++.++..++++|++||++||||||+||||+..++++++++++.||+||.++|+++.+..+ ..+|
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rG 82 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRG 82 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccc
Confidence 347999999999887888899999999999999999999999999999999999999999999999999987654 6899
Q ss_pred CCCCCCCCcCCCCCceeeeeeeec-CC
Q 042168 132 YSGGHAERFTKNLTRNETFTFDYY-EN 157 (179)
Q Consensus 132 Y~~~~~~~~~~~~dwkE~f~~~~~-~~ 157 (179)
|.+.+.+...+..||||.|+++.+ +.
T Consensus 83 Y~~~~~E~t~g~~d~kE~~d~g~~~~~ 109 (322)
T COG3491 83 YTPHGGELTDGEPDYKEGLDMGPDLDA 109 (322)
T ss_pred cccCcccccCCccchhhhccccccccc
Confidence 999998888888899999999988 53
No 20
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.88 E-value=7e-23 Score=176.05 Aligned_cols=112 Identities=26% Similarity=0.400 Sum_probs=87.9
Q ss_pred CCCCCCccCCCCccC-----CCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHH
Q 042168 36 ANLPTWFIWPNLEFA-----QEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDS 110 (179)
Q Consensus 36 ~~iP~~~v~p~~~~~-----~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~ 110 (179)
..||+.||||.+++. .....||||||+.. .+++++++|.+||++||||||+||||+.++++++++++++
T Consensus 13 ~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~------~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~ 86 (337)
T PLN02639 13 TTLPESYVRPESERPRLSEVSTCENVPVIDLGSP------DRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHE 86 (337)
T ss_pred CcCCHHhcCCchhcccccccccCCCCCeEECCCc------cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 689999999997752 23457999999863 3567899999999999999999999999999999999999
Q ss_pred HhCCCHHHHccCCCC-CCC-CCCCCCCCCCCcCCCCCceeeeeeee
Q 042168 111 IFKLPLERKLGIPRK-TGL-PQGYSGGHAERFTKNLTRNETFTFDY 154 (179)
Q Consensus 111 FF~LP~e~K~~~~~~-~~~-~~GY~~~~~~~~~~~~dwkE~f~~~~ 154 (179)
||+||.|+|+++... +.. ..+|..... ......+|+|.|.+..
T Consensus 87 fF~LP~e~K~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~ 131 (337)
T PLN02639 87 FFRLPVEEKMKLYSDDPTKTMRLSTSFNV-RKEKVHNWRDYLRLHC 131 (337)
T ss_pred HhcCCHHHHhhhhccCCCCcccccccccc-ccCcccCchheEEeee
Confidence 999999999997543 222 233333222 1234568999998754
No 21
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.87 E-value=3e-22 Score=171.81 Aligned_cols=114 Identities=23% Similarity=0.327 Sum_probs=87.2
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGY 132 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY 132 (179)
...||+|||+.. .+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++.+. ...+||
T Consensus 12 ~~~iP~IDl~~~------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~-~~~~GY 84 (332)
T PLN03002 12 VSSLNCIDLAND------DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN-EKHRGY 84 (332)
T ss_pred CCCCCEEeCCch------hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC-CCCCCc
Confidence 346999999942 2446889999999999999999999999999999999999999999999998654 457999
Q ss_pred CCCCCCCcC----CCCCceeeeeeeec-CCCChhHH-HHHHhhhhCc
Q 042168 133 SGGHAERFT----KNLTRNETFTFDYY-ENDAEPLV-VDHFKSVLGQ 173 (179)
Q Consensus 133 ~~~~~~~~~----~~~dwkE~f~~~~~-~~~~~~~~-~~~~~~~~~~ 173 (179)
.+.+.+... ...||||.|+++.. +.+.+... .-|..+.||+
T Consensus 85 ~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~ 131 (332)
T PLN03002 85 TPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPD 131 (332)
T ss_pred CcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcC
Confidence 876654432 23699999999865 33211111 0134577774
No 22
>PLN02997 flavonol synthase
Probab=99.86 E-value=1.9e-21 Score=166.50 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=78.4
Q ss_pred CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCC
Q 042168 52 EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQG 131 (179)
Q Consensus 52 ~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~G 131 (179)
....||||||+.+. +++++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.+. ...+|
T Consensus 29 ~~~~IPvIDls~~~------~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~-~~~~G 101 (325)
T PLN02997 29 SAVDVPVVDLSVSD------EDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE-EDFEG 101 (325)
T ss_pred CCCCCCeEECCCCC------HHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC-CCccc
Confidence 35689999999742 356899999999999999999999999999999999999999999999998753 45789
Q ss_pred CCCCCCCCcCCCCCceeeeeeee
Q 042168 132 YSGGHAERFTKNLTRNETFTFDY 154 (179)
Q Consensus 132 Y~~~~~~~~~~~~dwkE~f~~~~ 154 (179)
|..... .+..+|+|.|....
T Consensus 102 Y~~~~~---~~~~d~~e~~~~~~ 121 (325)
T PLN02997 102 YKRNYL---GGINNWDEHLFHRL 121 (325)
T ss_pred cCcccc---cCCCCccceeEeee
Confidence 976543 34568999877543
No 23
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=99.84 E-value=5.4e-21 Score=163.44 Aligned_cols=93 Identities=24% Similarity=0.469 Sum_probs=77.3
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGY 132 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY 132 (179)
...||+|||+.+.. ..+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... .+||
T Consensus 4 ~~~iPvIDls~~~~---~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~---~~gy 77 (321)
T PLN02299 4 MESFPVIDMEKLNG---EERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA---SKGL 77 (321)
T ss_pred CCCCCEEECcCCCc---ccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC---CCCc
Confidence 35799999998753 24567899999999999999999999999999999999999999999999997542 3677
Q ss_pred CCCCCCCcCCCCCceeeeeee
Q 042168 133 SGGHAERFTKNLTRNETFTFD 153 (179)
Q Consensus 133 ~~~~~~~~~~~~dwkE~f~~~ 153 (179)
.+...+ ....||||+|.+.
T Consensus 78 ~~~~~~--~~~~d~ke~~~~~ 96 (321)
T PLN02299 78 EGVQTE--VEDLDWESTFFLR 96 (321)
T ss_pred cccccc--CCCcCHHHHcccc
Confidence 654332 2457999999886
No 24
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=99.83 E-value=3.1e-20 Score=159.63 Aligned_cols=91 Identities=29% Similarity=0.388 Sum_probs=73.6
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGY 132 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY 132 (179)
+..||||||+. . ++.++|++||++||||||+||||+.++++++++++++||+||.|+|+++... ..+||
T Consensus 24 ~~~iPvIDls~-----~----~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~--~~~Gy 92 (335)
T PLN02156 24 PVLIPVIDLTD-----S----DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP--DPFGY 92 (335)
T ss_pred CCCCCcccCCC-----h----HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC--CCccc
Confidence 34699999983 1 2357899999999999999999999999999999999999999999998643 34599
Q ss_pred CCCCCCCcCCCCCceeeeeeeec
Q 042168 133 SGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 133 ~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
+...... ....+|+|+|.+...
T Consensus 93 ~~~~~~~-~~~~~~~e~~~~~~~ 114 (335)
T PLN02156 93 GTKRIGP-NGDVGWLEYILLNAN 114 (335)
T ss_pred CccccCC-CCCCCceeeEeeecC
Confidence 6533211 234699999998765
No 25
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=99.81 E-value=5.3e-20 Score=156.26 Aligned_cols=92 Identities=20% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGYSG 134 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY~~ 134 (179)
+||||||+.+.. ..+++++++|++||++||||||+||||+.++++++++++++||+||.++|.. .... ..+|..
T Consensus 2 ~iPvIDls~~~~---~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~-~~~~--~~~~~~ 75 (303)
T PLN02403 2 EIPVIDFDQLDG---EKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY-ESEI--AKALDN 75 (303)
T ss_pred CCCeEeCccCCc---ccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh-cccc--cCcccc
Confidence 699999998853 3467789999999999999999999999999999999999999999999962 2111 112211
Q ss_pred CCCCCcCCCCCceeeeeeeec
Q 042168 135 GHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 135 ~~~~~~~~~~dwkE~f~~~~~ 155 (179)
.+. .+..||||+|.++..
T Consensus 76 ~~~---~~~~d~kE~~~~~~~ 93 (303)
T PLN02403 76 EGK---TSDVDWESSFFIWHR 93 (303)
T ss_pred cCC---CCCccHhhhcccccC
Confidence 111 335699999998643
No 26
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=99.80 E-value=1.6e-19 Score=153.07 Aligned_cols=87 Identities=34% Similarity=0.468 Sum_probs=72.2
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGY 132 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY 132 (179)
...||||||+.+. +.+++|++||++||||||+||||+.++++++++++++||+||.|+|+++.. ....+||
T Consensus 3 ~~~iPvIDls~~~--------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~-~~~~~GY 73 (300)
T PLN02365 3 EVNIPTIDLEEFP--------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTD-VILGSGY 73 (300)
T ss_pred cCCCCEEEChhhH--------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccC-CCCCCCC
Confidence 3469999999862 235899999999999999999999999999999999999999999999754 2345799
Q ss_pred CCCCCCCcCCCCCceeeeeee
Q 042168 133 SGGHAERFTKNLTRNETFTFD 153 (179)
Q Consensus 133 ~~~~~~~~~~~~dwkE~f~~~ 153 (179)
...+. ..+|+|.|.+.
T Consensus 74 ~~~~~-----~~~~~e~~~~~ 89 (300)
T PLN02365 74 MAPSE-----VNPLYEALGLY 89 (300)
T ss_pred CCcCC-----CCCchhheecc
Confidence 76543 24688988775
No 27
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.80 E-value=2.2e-19 Score=154.73 Aligned_cols=92 Identities=25% Similarity=0.422 Sum_probs=69.8
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCC-C-C-CCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPR-K-T-GLP 129 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~-~-~-~~~ 129 (179)
...||+|||+.+ .+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. . + +..
T Consensus 36 ~~~IPvIDls~~----------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~ 105 (341)
T PLN02984 36 DIDIPVIDMECL----------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYF 105 (341)
T ss_pred cCCCCeEeCcHH----------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccc
Confidence 456999999864 24789999999999999999999999999999999999999999999752 1 1 112
Q ss_pred CCCCCCCCC---Cc----CCCCCceeeeeeee
Q 042168 130 QGYSGGHAE---RF----TKNLTRNETFTFDY 154 (179)
Q Consensus 130 ~GY~~~~~~---~~----~~~~dwkE~f~~~~ 154 (179)
.||...... .. ....||||+|+++.
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~ 137 (341)
T PLN02984 106 WGTPALTPSGKALSRGPQESNVNWVEGFNIPL 137 (341)
T ss_pred cCcccccccccccccccccCCCCeeeEEeCcC
Confidence 233211111 00 12479999999873
No 28
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=97.91 E-value=6.1e-06 Score=68.96 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHHHHhC-CCHHHHccCCCCCC--CCCCCCCCCCCC--cCCCCCceeeeeeeec
Q 042168 104 ASEEIDSIFK-LPLERKLGIPRKTG--LPQGYSGGHAER--FTKNLTRNETFTFDYY 155 (179)
Q Consensus 104 ~~~~~~~FF~-LP~e~K~~~~~~~~--~~~GY~~~~~~~--~~~~~dwkE~f~~~~~ 155 (179)
+.+.+++||+ ||.|+|+++.+..+ ..+||+...... .....||||+|.+...
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~ 57 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTF 57 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeec
Confidence 3578999997 99999999877543 468996544321 1235699999998644
No 29
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=76.79 E-value=2.5 Score=37.78 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhC
Q 042168 52 EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 52 ~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 113 (179)
...-||.||++++.++. +.+...+..++.|.+.|.|+ |+.+......+.+++|.+
T Consensus 46 G~~~IP~i~f~di~~~~------~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 46 GSSIIPEIDFADIENGG------VSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp T--SS-EEEHHHHHCT---------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeHHHHhCCC------CCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 45679999999886542 34667788899999998887 899988888888888875
No 30
>PRK08130 putative aldolase; Validated
Probab=69.54 E-value=5.8 Score=31.83 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=28.0
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++++... ++ .++++.+.+++++...+.+.|||+
T Consensus 127 ~i~v~~y~~~--g~----~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRP--GD----PAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCC--Ch----HHHHHHHHHHhccCCEEEEcCCCC
Confidence 5888877642 22 367788888999999999999996
No 31
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=68.14 E-value=6.5 Score=30.77 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=27.6
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||+++.... ++ .++++.+.+++++...+.|.|||+
T Consensus 120 ~v~v~~~~~~--g~----~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 120 KIPILPFRPA--GS----VELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CEeeecCCCC--Cc----HHHHHHHHHHhccCCEEEEcCCCC
Confidence 5898887642 22 256777888888888999999996
No 32
>PRK06755 hypothetical protein; Validated
Probab=60.43 E-value=9.6 Score=30.79 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=26.7
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||+|+...- ...++++.+..+.++...+.|-|||+
T Consensus 136 ~IPiv~~~~~------~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKK------FADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCc------hhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 5899987542 12456677777778888999999996
No 33
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=60.19 E-value=36 Score=28.40 Aligned_cols=44 Identities=18% Similarity=0.395 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhhccE--EEEEc-CCCCHHHHHHHHHHHHHHhC
Q 042168 70 RATAEAIEHVRGACVNHGL--FQVIN-HGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 70 ~~~~~~~~~l~~Ac~~~GF--F~v~n-HGI~~~li~~~~~~~~~FF~ 113 (179)
+.-......+.+++..+|| |+++| ||=....+..+.+..+..|.
T Consensus 86 ~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 86 ETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 4456778889999999999 66666 89888777777777666664
No 34
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=58.98 E-value=14 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++++... ++ .++++.+.+++.+...+.|.|||+
T Consensus 127 ~v~~~~y~~~--gs----~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAAS--GT----PEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCC--Cc----HHHHHHHHHHhCcCCEEEEcCCCC
Confidence 4777776532 22 367888888899999999999996
No 35
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=53.44 E-value=21 Score=31.02 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=37.6
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHh
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIF 112 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 112 (179)
...+|.||++.+.+.+ +.+.++.+|+.++|+..|.+-.++.+.+ .+.+++|-
T Consensus 107 ~~~~~~~d~~~~~~~~-----~~~~~~~~~l~~~G~v~~rg~~~~~~~~---~~~~~~~G 158 (366)
T TIGR02409 107 ELSLPKFDHEAVMKDD-----SVLLDWLSAVRDVGIAVLKGAPTKPGAV---EKLGKRIG 158 (366)
T ss_pred cccCCceeHHHHhCCH-----HHHHHHHHHHHhccEEEEeCCCCCHHHH---HHHHHHhc
Confidence 4568999998776432 3567889999999999999988876543 34444443
No 36
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=52.62 E-value=11 Score=29.11 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=27.3
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhh-hccEEEEEcCCC
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACV-NHGLFQVINHGV 96 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~-~~GFF~v~nHGI 96 (179)
..||+|+.... ++. ++++.|.++++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~--~~~----~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPP--GSE----ELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THST--TCH----HHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccc--cch----hhhhhhhhhhcCCceEEeecCCce
Confidence 56888887652 222 45677888888 889999999995
No 37
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=52.52 E-value=18 Score=29.06 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=26.3
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++.+... ++. ++++.+.+++.+...+.+.|||+
T Consensus 122 ~v~~~~y~~~--gs~----~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATF--GTR----ELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCC--CCH----HHHHHHHHHhCcCCEEEecCCCC
Confidence 4777776543 222 56777888888888999999996
No 38
>PRK06661 hypothetical protein; Provisional
Probab=50.94 E-value=21 Score=29.18 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=25.4
Q ss_pred CceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 56 EPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 56 iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
||..++......+ .+.++.+.+++.+...+.+.|||+
T Consensus 124 i~~~~~~~~~~~~----~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 124 ISYHNYNSLALDA----DKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred ceecCCCccccCc----hhHHHHHHHHhCCCCEEEECCCCC
Confidence 5655554432211 245677888888999999999996
No 39
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=50.84 E-value=15 Score=29.17 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=27.3
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
..||+++......+ ..++++.+.++..+.-.+.+.|||+
T Consensus 121 ~~ip~~~~~~~~~~----~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPETG----EDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCCcc----HHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 36888887653211 2345666777777888999999996
No 40
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=49.64 E-value=18 Score=29.01 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhccEEEEEcCCC
Q 042168 74 EAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
++++.+.+++.+...+.+.|||+
T Consensus 137 ~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 137 ELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred HHHHHHHHHhCcCCEEEECCCCC
Confidence 56777888888889999999996
No 41
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=47.22 E-value=60 Score=24.15 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhccEEEEEcC-CCCHHHHHHHHHHHHH
Q 042168 72 TAEAIEHVRGACVNHGLFQVINH-GVDASLLKAASEEIDS 110 (179)
Q Consensus 72 ~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~ 110 (179)
....++++.+.++++.+++|+++ |++...+.++....+.
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 35678899999999988888875 8999888888877764
No 42
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=47.18 E-value=22 Score=29.84 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=26.5
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++.+... ++ .++++.+.+++.+...+.+.|||+
T Consensus 179 ~i~vvpy~~p--gs----~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 179 GVGIVPWMVP--GT----DEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred ceeEecCCCC--CC----HHHHHHHHHHhccCCEEEEcCCCC
Confidence 4777766532 22 256777888888888999999996
No 43
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=44.78 E-value=28 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=24.7
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhh---hccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACV---NHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~---~~GFF~v~nHGI 96 (179)
.||+++. ..+. .++++.+.++++ +...+.|-|||+
T Consensus 126 ~vp~~~~---~~gs----~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFEN---TQDI----ARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecC---CCCh----HHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 5888763 1222 357778888875 478999999996
No 44
>PLN02433 uroporphyrinogen decarboxylase
Probab=43.45 E-value=63 Score=27.77 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHHHHHhhhccEEEEEcCCCC----HHHHHHHHHHHHHHh
Q 042168 66 SGDERATAEAIEHVRGACVNHGLFQVINHGVD----ASLLKAASEEIDSIF 112 (179)
Q Consensus 66 ~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~----~~li~~~~~~~~~FF 112 (179)
.++++...+.++++.+++..-||+.=.+|||+ .+-++.+.++++++-
T Consensus 288 ~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~~ 338 (345)
T PLN02433 288 FGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVARELR 338 (345)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 46676666777777777766788888889986 467888888888744
No 45
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=42.31 E-value=25 Score=28.16 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=24.2
Q ss_pred CceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 56 EPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 56 iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
||+|.+.... + .++++.+.++..+...+.|.|||+
T Consensus 122 i~~v~y~~~g--s----~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 122 IPCVPYATFG--S----TKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred ccccCCCCCC--h----HHHHHHHHHHhhhCCEEehhcCCC
Confidence 5665554322 1 246677777777889999999996
No 46
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=42.28 E-value=28 Score=29.24 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=26.9
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++.+.. .|+ .++++.+.+++++..-+.+.|||+
T Consensus 177 ~i~vvp~~~--pGs----~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMV--PGT----NEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcC--CCC----HHHHHHHHHHhccCCEEEEcCCCC
Confidence 477776654 222 267888888888889999999996
No 47
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=42.20 E-value=36 Score=21.44 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=17.7
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACVN 85 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~~ 85 (179)
|+|.+.-+...+.++++++++.|.+|+.+
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~a~~~ 30 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTEVVSR 30 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 55555444444666777777777776553
No 48
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=41.08 E-value=41 Score=27.37 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhc-------cEEEEEcCCC
Q 042168 74 EAIEHVRGACVNH-------GLFQVINHGV 96 (179)
Q Consensus 74 ~~~~~l~~Ac~~~-------GFF~v~nHGI 96 (179)
+.++.+.+++++. ..+.+.|||+
T Consensus 143 ~~~~~ia~~l~~~~~~~~~~~avLl~nHG~ 172 (231)
T PRK08193 143 ETGKVIVETFEKRGIDPAAVPGVLVHSHGP 172 (231)
T ss_pred hHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 5566777777754 4799999996
No 49
>PRK05834 hypothetical protein; Provisional
Probab=39.98 E-value=40 Score=26.77 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=23.0
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhcc--EEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHG--LFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~G--FF~v~nHGI 96 (179)
.||++...... + ..+..++.+.+++.+.. .+.|.|||+
T Consensus 121 ~ipv~~~~~~~--~--~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFD--D--WYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccc--h--HHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 47776544321 1 11234566777777644 899999996
No 50
>PRK06357 hypothetical protein; Provisional
Probab=39.64 E-value=39 Score=27.29 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=23.5
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhc------cEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNH------GLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~------GFF~v~nHGI 96 (179)
.||++.+... ++ .++++.+.+++++. ..+.+.|||+
T Consensus 130 ~i~~~p~~~~--gs----~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPA--TS----PELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCC--Cc----HHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 3566655432 22 35677777777654 5899999996
No 51
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=39.45 E-value=40 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=15.2
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~ 84 (179)
|+|.+.-....+.++++++++.|.++..
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~l~ 28 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEAVS 28 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4555443333355666666666666654
No 52
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=39.17 E-value=31 Score=27.69 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=24.7
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHh--hhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGAC--VNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac--~~~GFF~v~nHGI 96 (179)
.||++..... ++ .+.++.+.++. .+...+.+.|||+
T Consensus 130 ~ip~~~y~~~--g~----~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 130 PIPVGPFALI--GD----EAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred CeeccCCcCC--Cc----HHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 4777665432 22 24566777777 6778899999996
No 53
>PF09220 LA-virus_coat: L-A virus, major coat protein; InterPro: IPR015302 Members of this entry include the major coat protein of the Saccharomyces cerevisiae virus L-A (ScV-L-A) []. The major coat protein is a large polypeptide without apparent domain division.; PDB: 1M1C_B.
Probab=38.46 E-value=36 Score=30.53 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCCCCccCCCCcc------------CCCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhc
Q 042168 36 ANLPTWFIWPNLEF------------AQEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNH 86 (179)
Q Consensus 36 ~~iP~~~v~p~~~~------------~~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~ 86 (179)
...|.+|-||.... ..+..+.|.||+.+|.. +.+.-|..+|.+|
T Consensus 166 ~~~~~~~~WPg~~~~e~yp~~~~~~e~~P~~d~p~iDlrgLt~-------~Ea~~VL~m~s~W 221 (436)
T PF09220_consen 166 PDEPVSWSWPGSRSSEEYPEWTPFTEFFPQEDVPYIDLRGLTP-------EEATIVLMMCSEW 221 (436)
T ss_dssp TTS-SS---SS-TTTS---EEEEE--SS-SSSS-EEE-TTS-H-------HHHHHHHHHCS-B
T ss_pred CCCcceecCCCCCcccccccccchhhcCcccCCceeeccCCCH-------HHHHHHHHHhhhh
Confidence 45667889997543 13566899999998752 3455577899987
No 54
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=38.28 E-value=47 Score=21.20 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhcc--EEEEEc------CCCCHHHHHHHHHHHHH
Q 042168 74 EAIEHVRGACVNHG--LFQVIN------HGVDASLLKAASEEIDS 110 (179)
Q Consensus 74 ~~~~~l~~Ac~~~G--FF~v~n------HGI~~~li~~~~~~~~~ 110 (179)
+..+.|.+.++++| .+.+.. |||+.+.+.++++..++
T Consensus 24 ~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 24 EQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 34666777777776 777654 67999988888877654
No 55
>PF07461 NADase_NGA: Nicotine adenine dinucleotide glycohydrolase (NADase); InterPro: IPR010900 This family consists of several bacterial nicotine adenine dinucleotide glycohydrolase (NGA) proteins which appear to be specific to Streptococcus pyogenes. NAD glycohydrolase (NADase) is a potential virulence factor. Streptococcal NADase may contribute to virulence by its ability to cleave beta-NAD at the ribose-nicotinamide bond, depleting intracellular NAD pools and producing the potent vasoactive compound nicotinamide [].; PDB: 3PNT_C.
Probab=38.21 E-value=34 Score=30.11 Aligned_cols=51 Identities=25% Similarity=0.476 Sum_probs=29.5
Q ss_pred CCCCCCccCCCCcc--CCCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 36 ANLPTWFIWPNLEF--AQEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 36 ~~iP~~~v~p~~~~--~~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.+||.+-.|....- ...++-.|-||+.++. .+.+..+....|+|-++|--|
T Consensus 372 LNIPG~qTwaGkni~~SeSELi~pSid~k~l~----------~~~vL~~i~~~Gyyei~nP~i 424 (446)
T PF07461_consen 372 LNIPGCQTWAGKNIENSESELIFPSIDVKGLK----------SKDVLAAIESKGYYEIINPTI 424 (446)
T ss_dssp T-BTTTB---TT-GGG--B-EEE-EEE-TT------------HHHHHHHHHHHSEEEEES-EE
T ss_pred cCCCcccccccccccccccceeeccccccCcc----------HHHHHHHhhcCceEEeeCCeE
Confidence 47888878876664 2356678999999874 455777888889999998643
No 56
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=37.86 E-value=1e+02 Score=22.43 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=35.7
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhh---ccEEEEEcCCCCHHHHHHHHHHHHHH
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVN---HGLFQVINHGVDASLLKAASEEIDSI 111 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~---~GFF~v~nHGI~~~li~~~~~~~~~F 111 (179)
...||.+-... -++|+.||-. .....|.+.|....+++.+....+++
T Consensus 67 ~~~Ip~~~~~s------------k~eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~i~~~ 116 (117)
T TIGR03677 67 EKGIPYVYVKK------------KEDLGAAAGLEVGAASAAIVDEGKAEELLKEIIEKVEAL 116 (117)
T ss_pred HcCCCEEEeCC------------HHHHHHHhCCCCCeEEEEEEchhhhHHHHHHHHHHHHhc
Confidence 44688776642 3457888874 67888999999999999988877764
No 57
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=37.75 E-value=83 Score=26.60 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCC-CCHHH
Q 042168 52 EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHG-VDASL 100 (179)
Q Consensus 52 ~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG-I~~~l 100 (179)
++..||||-+|-...-+++...++.++|+.+-++ | ..|+.-| +...+
T Consensus 129 PdadipVV~iSi~~~~~~~~h~~lG~al~~lree-~-vlilaSGs~~H~l 176 (268)
T COG3384 129 PDADIPVVQISIDCTLSPADHYELGRALRKLREE-G-VLILASGSLVHNL 176 (268)
T ss_pred CccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC-C-EEEEecCcceeeh
Confidence 5789999999876554566777889999999888 7 4444444 44433
No 58
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=37.33 E-value=39 Score=26.21 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++ .... ++ .++++.+.+++.+.-.+.|.|||+
T Consensus 115 ~ipv~-~~~~--~~----~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDI--GS----GELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCC--CC----HHHHHHHHHHHhhCCEEEEcCCCc
Confidence 58887 3221 22 256777888888888999999996
No 59
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=36.94 E-value=1.3e+02 Score=22.53 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhccEEEEEcC-CCCHHHHHHHHHHHHH
Q 042168 71 ATAEAIEHVRGACVNHGLFQVINH-GVDASLLKAASEEIDS 110 (179)
Q Consensus 71 ~~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~ 110 (179)
...+.++++.+.+++..+++|+++ |++.+.+.++....+.
T Consensus 4 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 4 KKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 345678888888888887777764 8888888887777664
No 60
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=36.67 E-value=28 Score=24.03 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=17.3
Q ss_pred HHHHHHhhhccEEEEEcCCCC
Q 042168 77 EHVRGACVNHGLFQVINHGVD 97 (179)
Q Consensus 77 ~~l~~Ac~~~GFF~v~nHGI~ 97 (179)
+.|..-|.+-||.||.-|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 347788999999999888765
No 61
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=35.85 E-value=36 Score=21.14 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=15.6
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACVN 85 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~~ 85 (179)
|+|.+.-....+.++++++++.|.+++.+
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~ 29 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVE 29 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 55555444333556666677776666553
No 62
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=35.68 E-value=49 Score=20.51 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=16.3
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~ 84 (179)
|+|.+.-+...+.+++.++++.|.+++.
T Consensus 2 P~i~i~~~~Grs~eqk~~l~~~it~~l~ 29 (61)
T PRK02220 2 PYVHIKLIEGRTEEQLKALVKDVTAAVS 29 (61)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 5555543333456666777777766655
No 63
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=34.80 E-value=59 Score=28.23 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHh
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIF 112 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 112 (179)
..+|.+|+..+...+. +.+.++.+++.++|+..|.|-.++.+... +.+++|-
T Consensus 99 ~~~~~~~~~~~~~~~d----~~l~~~l~~l~~~G~v~~~g~~~~~~~~~---~~a~riG 150 (362)
T TIGR02410 99 LKDPSVHFKTTYDHTD----STLKSFSKNIYKYGFTFVDNVPVTPEATE---KLCERIS 150 (362)
T ss_pred ccCCceeHHHHhccCH----HHHHHHHHHHHhhCEEEEcCCCCCHHHHH---HHHHHhc
Confidence 3468888877664322 45778999999999999999988765544 4444443
No 64
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=34.39 E-value=1.5e+02 Score=22.67 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhccEEEEEcC-CCCHHHHHHHHHHHHH
Q 042168 71 ATAEAIEHVRGACVNHGLFQVINH-GVDASLLKAASEEIDS 110 (179)
Q Consensus 71 ~~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~ 110 (179)
...+.+++|.+.++++-.++|+++ |++...+.++....+.
T Consensus 5 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 5 EKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 455678888888888876666664 7888877777777665
No 65
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=34.36 E-value=1e+02 Score=26.38 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHHhhhccEEEEEcCCCC----HHHHHHHHHHHHHH
Q 042168 67 GDERATAEAIEHVRGACVNHGLFQVINHGVD----ASLLKAASEEIDSI 111 (179)
Q Consensus 67 ~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~----~~li~~~~~~~~~F 111 (179)
++++...+.++++.+.+..-||..-.+|||+ .+-++++.+++++|
T Consensus 296 gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 296 APPEAIEEEVRAILDGGGGPGHIFNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred CCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 4566666677777776677888888899875 46788888888773
No 66
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=33.17 E-value=43 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhh-hccEEEEEcCCC
Q 042168 73 AEAIEHVRGACV-NHGLFQVINHGV 96 (179)
Q Consensus 73 ~~~~~~l~~Ac~-~~GFF~v~nHGI 96 (179)
.++++.+.++.+ +...+.+.|||+
T Consensus 148 ~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 148 PTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred HHHHHHHHHHhccCCcEEEECCCce
Confidence 367888888887 888999999995
No 67
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=33.01 E-value=45 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhcc---EEEEEcCCC
Q 042168 73 AEAIEHVRGACVNHG---LFQVINHGV 96 (179)
Q Consensus 73 ~~~~~~l~~Ac~~~G---FF~v~nHGI 96 (179)
.++++.+.+++++.. .+.|.|||+
T Consensus 145 ~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 145 ARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 467888888888764 899999996
No 68
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=32.82 E-value=21 Score=19.67 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=12.5
Q ss_pred EEEEcCCCCHHHHHHHH
Q 042168 89 FQVINHGVDASLLKAAS 105 (179)
Q Consensus 89 F~v~nHGI~~~li~~~~ 105 (179)
.||..||++.+.+.+-+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 47888999988766543
No 69
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=31.73 E-value=48 Score=29.72 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhccEEEEE--cCCCCHH
Q 042168 71 ATAEAIEHVRGACVNHGLFQVI--NHGVDAS 99 (179)
Q Consensus 71 ~~~~~~~~l~~Ac~~~GFF~v~--nHGI~~~ 99 (179)
....++..|.+||++.|+.+|+ .||-.+.
T Consensus 433 atD~aig~Iy~A~~~~~y~lvvTADHGNAEk 463 (531)
T KOG4513|consen 433 ATDEAIGKIYDAIEQVGYILVVTADHGNAEK 463 (531)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEcCCCCHHH
Confidence 4467788999999999999998 5886654
No 70
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=30.24 E-value=1.2e+02 Score=25.22 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=36.3
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCC
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKL 114 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 114 (179)
++|--|||+..++ ++..++|.+|+.++|+..+.|-.++. ++..+.+++|-.+
T Consensus 14 aev~g~dl~~~l~------~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 14 AQISGIDLTRPLS------DNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred eEEeCcccCCcCC------HHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 4555577765321 14577899999999999999998875 4555566666554
No 71
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=30.16 E-value=69 Score=19.90 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=12.8
Q ss_pred ceeecCCC-CCCChHHHHHHHHHHHHHhh
Q 042168 57 PLIDLQGF-ISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 57 PvIDl~~l-~~~~~~~~~~~~~~l~~Ac~ 84 (179)
|+|.+.-+ ...+.++++++++.|.+++.
T Consensus 1 P~i~i~i~~~grt~eqK~~l~~~it~~l~ 29 (63)
T TIGR00013 1 PFVNIYILKEGRTDEQKRQLIEGVTEAMA 29 (63)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 44544433 12244555555555554443
No 72
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=30.13 E-value=1.3e+02 Score=22.98 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhccEEEEE-cCCCCHHHHHHHHHHHHH
Q 042168 72 TAEAIEHVRGACVNHGLFQVI-NHGVDASLLKAASEEIDS 110 (179)
Q Consensus 72 ~~~~~~~l~~Ac~~~GFF~v~-nHGI~~~li~~~~~~~~~ 110 (179)
..+.+++|.+.+.++-.++|+ .+|++...+.++.+..+.
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 346778888888887766666 478888888888887663
No 73
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=29.46 E-value=2e+02 Score=22.41 Aligned_cols=41 Identities=7% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhhccEEEEEc-CCCCHHHHHHHHHHHHH
Q 042168 70 RATAEAIEHVRGACVNHGLFQVIN-HGVDASLLKAASEEIDS 110 (179)
Q Consensus 70 ~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 110 (179)
+...++++.|.+.+++...|.|++ +|++...+.++....+.
T Consensus 6 e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 6 EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 345678888999999887777766 69999999988888876
No 74
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=28.92 E-value=78 Score=19.62 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=15.7
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~ 84 (179)
|+|.+.-+...+.+++.++++.|.++..
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~ 29 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTV 29 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 5555543333356666667776666544
No 75
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=28.58 E-value=1.6e+02 Score=22.79 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhccEEEEEc-CCCCHHHHHHHHHHHHH
Q 042168 72 TAEAIEHVRGACVNHGLFQVIN-HGVDASLLKAASEEIDS 110 (179)
Q Consensus 72 ~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 110 (179)
..+.+++|.+.+.++-.++|++ .|++...+.++.+..+.
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 3467788888888887666665 68888888888777764
No 76
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=28.55 E-value=1e+02 Score=26.01 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHH--HhhhccEEEEEcCCC----CHHHHHHHHHHHHHH
Q 042168 67 GDERATAEAIEHVRG--ACVNHGLFQVINHGV----DASLLKAASEEIDSI 111 (179)
Q Consensus 67 ~~~~~~~~~~~~l~~--Ac~~~GFF~v~nHGI----~~~li~~~~~~~~~F 111 (179)
+++++..+.++++.+ .+..-||+.=.+||| +.+-+..+.++++++
T Consensus 293 gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 293 GTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp S-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 667777777766666 455889988888876 456788888888764
No 77
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=28.01 E-value=1.9e+02 Score=21.20 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=36.6
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhh---ccEEEEEcCCCCHHHHHHHHHHHHHH
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVN---HGLFQVINHGVDASLLKAASEEIDSI 111 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~---~GFF~v~nHGI~~~li~~~~~~~~~F 111 (179)
...||++-... -++|+.||.. ....-|.++|....+++.+.+..+++
T Consensus 71 ~~~Vp~~~~~t------------k~eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~i~~~ 120 (122)
T PRK04175 71 EKKIPYVYVPS------------KKDLGKAAGLEVGAAAAAIVDAGKAKELVEDIVEKVNEL 120 (122)
T ss_pred HcCCCEEEECC------------HHHHHHHhCCCCCeEEEEEechhhhHHHHHHHHHHHHHh
Confidence 34688766642 3468888885 48899999999999999998888775
No 78
>PRK06486 hypothetical protein; Provisional
Probab=28.01 E-value=58 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhccEEEEEcCCC
Q 042168 74 EAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
+.++.|.+++.+...+.|.|||+
T Consensus 163 ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 163 AEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred hHHHHHHHHhCcCCEEEECCCCC
Confidence 56778888888899999999996
No 79
>PRK06208 hypothetical protein; Provisional
Probab=27.84 E-value=59 Score=27.39 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhccEEEEEcCCC
Q 042168 74 EAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
++++.+.+++++...+.+.|||+
T Consensus 178 ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 178 SEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred HHHHHHHHHhccCCEEEECCCCc
Confidence 56778888888889999999996
No 80
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=26.91 E-value=1.2e+02 Score=20.32 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHH
Q 042168 74 EAIEHVRGACVNHGLFQVINHGVDASLLKAASEEI 108 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~ 108 (179)
.+++.|..+++++||..=--||.-.+...+++...
T Consensus 16 ~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~~ 50 (74)
T PF08823_consen 16 DVAREVQEALKRLGYYKGEADGVWDEATEDALRAW 50 (74)
T ss_pred HHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHHH
Confidence 57889999999999998888887666555554443
No 81
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=26.81 E-value=97 Score=27.06 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHHHHHHHHhh-hccEEEEEcCCCCH------HHHHHHHHHHH
Q 042168 64 FISGDERATAEAIEHVRGACV-NHGLFQVINHGVDA------SLLKAASEEID 109 (179)
Q Consensus 64 l~~~~~~~~~~~~~~l~~Ac~-~~GFF~v~nHGI~~------~li~~~~~~~~ 109 (179)
|..|+++...+.++++.+.+. .-||..=.+|||+. +-++.+.++++
T Consensus 325 L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~ 377 (378)
T cd03308 325 LKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVR 377 (378)
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHh
Confidence 345677777777777878776 67888888899865 44555555443
No 82
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.73 E-value=78 Score=23.64 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHHhhhccEEEEEc
Q 042168 68 DERATAEAIEHVRGACVNHGLFQVIN 93 (179)
Q Consensus 68 ~~~~~~~~~~~l~~Ac~~~GFF~v~n 93 (179)
+.+.|.+..++|...|++.|| .|.+
T Consensus 70 ~~~~r~~~y~kI~~~~~~~gf-~v~D 94 (130)
T PF04914_consen 70 SKEMRQEYYKKIKYQLKSQGF-NVAD 94 (130)
T ss_dssp -HHHHHHHHHHHHHHHHTTT---EEE
T ss_pred CHHHHHHHHHHHHHHHHHCCC-EEEe
Confidence 367889999999999999999 7765
No 83
>PRK07044 aldolase II superfamily protein; Provisional
Probab=26.58 E-value=87 Score=25.79 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=24.5
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++++..+.. + .+.++.+.+++.+...+.+-|||+
T Consensus 138 ~i~~~~y~~~~~-~----~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 138 RLAYHDYEGIAL-D----LDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CceeeCCCCCcC-C----HHHHHHHHHHhccCCEEEECCCCc
Confidence 477776654321 1 134566777777888999999996
No 84
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=26.22 E-value=2.1e+02 Score=24.70 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhccEEEEEc-CCCCHHHHHHHHHHHHH
Q 042168 70 RATAEAIEHVRGACVNHGLFQVIN-HGVDASLLKAASEEIDS 110 (179)
Q Consensus 70 ~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 110 (179)
+...+.++.|.+.+.++..++|++ +|++...+.++++..+.
T Consensus 6 e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 6 EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 345677888888888888777776 68888888888887774
No 85
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=25.44 E-value=82 Score=21.43 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHhhhccEEEEEcC
Q 042168 69 ERATAEAIEHVRGACVNHGLFQVINH 94 (179)
Q Consensus 69 ~~~~~~~~~~l~~Ac~~~GFF~v~nH 94 (179)
.+...++++.+.++|++.|.-.|-.|
T Consensus 70 ~~~l~~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 70 PEELKEIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCcEeCcC
Confidence 45677889999999999999887654
No 86
>PRK07490 hypothetical protein; Provisional
Probab=24.78 E-value=73 Score=26.13 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhccEEEEEcCCC
Q 042168 74 EAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
+.++.|.+++.+.-.+.+.|||+
T Consensus 147 ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 147 EEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred HHHHHHHHHhCcCCEEEECCCCc
Confidence 56788888888888999999996
No 87
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=24.66 E-value=99 Score=18.75 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Q 042168 75 AIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLP 115 (179)
Q Consensus 75 ~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP 115 (179)
.++.|...+...||....-.|+-...+.++......++.|+
T Consensus 4 ~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 4 DVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 46778888999999855556666666666666666666665
No 88
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=23.54 E-value=2e+02 Score=24.00 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=35.6
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHH---HHHHHHHHHHH
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDAS---LLKAASEEIDS 110 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~---li~~~~~~~~~ 110 (179)
.+.-+|+||+++- .++.+.++|..|.+ -+|..+.-..++.. .+.++++..++
T Consensus 128 hDF~~ISLSDlLt----Pwe~IekRl~aAA~-adfVi~~YNP~s~~R~~~~~~a~eil~~ 182 (249)
T COG1010 128 HDFCVISLSDLLT----PWEVIEKRLRAAAE-ADFVIALYNPISKRRPEQLGRAFEILRE 182 (249)
T ss_pred cceEEEEhHhcCC----cHHHHHHHHHHHhh-CCEEEEEECCccccchHHHHHHHHHHHH
Confidence 4577899999874 35566677765555 59999988888876 45555554444
No 89
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=23.10 E-value=1.5e+02 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhccEEEEEcCCCCHHHHHH
Q 042168 74 EAIEHVRGACVNHGLFQVINHGVDASLLKA 103 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~ 103 (179)
+..++|.+++.+.||+.|.+-.++.+.+.+
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~~~ 53 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQFEA 53 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHHHH
Confidence 467889999999999999988876655444
No 90
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=22.96 E-value=1.1e+02 Score=19.23 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=14.2
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~ 84 (179)
|+|.+.-....+.+.+.++++.|.+++.
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~ 29 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAIS 29 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4444432222345566666666665544
No 91
>PRK15331 chaperone protein SicA; Provisional
Probab=22.69 E-value=87 Score=24.53 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhC
Q 042168 72 TAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 72 ~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 113 (179)
.+++++.|.+|... |-=.-.-|||+++.++.++..+-.||.
T Consensus 9 ~~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~ 49 (165)
T PRK15331 9 EERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYN 49 (165)
T ss_pred HHHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 45677888888887 433334599999999999999999995
No 92
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=22.59 E-value=1.7e+02 Score=24.50 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhh--ccEEEEEcCCCC----HHHHHHHHHHHH
Q 042168 64 FISGDERATAEAIEHVRGACVN--HGLFQVINHGVD----ASLLKAASEEID 109 (179)
Q Consensus 64 l~~~~~~~~~~~~~~l~~Ac~~--~GFF~v~nHGI~----~~li~~~~~~~~ 109 (179)
+..+++++..+.++++.+.+.. -||+.=..|||+ .+-+.++.++++
T Consensus 278 l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~p~enl~a~v~a~~ 329 (330)
T cd03465 278 LLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDTPIENIKAMIDAVR 329 (330)
T ss_pred hcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCHHHHHHHHHHHh
Confidence 4456666666666677776655 577777888875 355666655554
No 93
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=22.31 E-value=54 Score=26.45 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=29.9
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCH
Q 042168 58 LIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDA 98 (179)
Q Consensus 58 vIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~ 98 (179)
+|++..+.+++.....+.++++.++|+++|.-.++- +...
T Consensus 96 vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~ 135 (236)
T PF01791_consen 96 VINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLR 135 (236)
T ss_dssp EEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECEC
T ss_pred eccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecC
Confidence 455554555555666778899999999999999988 6544
No 94
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=22.03 E-value=1.9e+02 Score=20.70 Aligned_cols=45 Identities=27% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHH
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLL 101 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li 101 (179)
.+=-|||+++..-|+...+- .-.+.+-|+.-|- .|.-+|||+.+.
T Consensus 40 ~~~~idLs~v~rvDSaglAL-L~~~~~~~k~~g~-~~~L~~~p~~L~ 84 (99)
T COG3113 40 DTVRIDLSGVSRVDSAGLAL-LLHLIRLAKKQGN-AVTLTGVPEQLR 84 (99)
T ss_pred CeEEEehhhcceechHHHHH-HHHHHHHHHHcCC-eeEEecCcHHHH
Confidence 56678999887666655543 4456677777787 888899998653
No 95
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=21.56 E-value=1.3e+02 Score=25.45 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhccE-------EEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCC
Q 042168 74 EAIEHVRGACVNHGL-------FQVINHGVDASLLKAASEEIDSIFKLPLERKLGIP 123 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GF-------F~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~ 123 (179)
..+..+.+-|.++|. |.+-|..=+++.++.+++.+++-+..+.++...+.
T Consensus 67 ~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~ 123 (271)
T KOG1602|consen 67 EALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQGEKLD 123 (271)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456678888999996 55678888999999999999999998887754443
No 96
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=20.46 E-value=2.9e+02 Score=18.78 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhhccE-EEEEcCCCCHHHHHHHHHHHHHH
Q 042168 71 ATAEAIEHVRGACVNHGL-FQVINHGVDASLLKAASEEIDSI 111 (179)
Q Consensus 71 ~~~~~~~~l~~Ac~~~GF-F~v~nHGI~~~li~~~~~~~~~F 111 (179)
...+.+++|.+.+.++=. +.+.-+|++...+.++....+..
T Consensus 5 ~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~ 46 (100)
T PF00466_consen 5 KKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKK 46 (100)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 456788899999998844 44455799999998888888775
No 97
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=20.45 E-value=3.2e+02 Score=20.11 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCCCCCceeecCCCCCCChHHHHHHHHHHHHHhh---hccEEEEE-cCCCC-HHHHHHHHH
Q 042168 51 QEEHKEPLIDLQGFISGDERATAEAIEHVRGACV---NHGLFQVI-NHGVD-ASLLKAASE 106 (179)
Q Consensus 51 ~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~---~~GFF~v~-nHGI~-~~li~~~~~ 106 (179)
.+..+||+||=..++-.+.-...+.+.-|+.-.+ +--||.+| ||-.+ ..+|..+++
T Consensus 36 ~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ms~~Ye 96 (116)
T KOG1654|consen 36 AGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSATMSALYE 96 (116)
T ss_pred cccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhhHHHHHH
Confidence 3566899999877765544444555555554322 33455555 55433 345555543
No 98
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=20.07 E-value=1.8e+02 Score=21.63 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhc-cEEEEEcCCCCHHHHH
Q 042168 70 RATAEAIEHVRGACVNH-GLFQVINHGVDASLLK 102 (179)
Q Consensus 70 ~~~~~~~~~l~~Ac~~~-GFF~v~nHGI~~~li~ 102 (179)
+.|...++.|.+++.+. |.+.|=|.+.....+.
T Consensus 55 DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ 88 (130)
T PF11074_consen 55 DPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLK 88 (130)
T ss_pred CchHHHHHHHHHHhhhhcCeEEEechHHHHHHHH
Confidence 45778999999999999 9999999975544333
Done!