Query 042168
Match_columns 179
No_of_seqs 190 out of 1255
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 99.9 4.3E-28 1.5E-32 208.3 10.3 122 34-155 14-148 (356)
2 3oox_A Putative 2OG-Fe(II) oxy 99.9 2.3E-25 7.9E-30 188.1 5.7 118 53-175 4-124 (312)
3 1odm_A Isopenicillin N synthas 99.9 1.1E-23 3.8E-28 179.1 7.7 94 54-155 7-109 (331)
4 3on7_A Oxidoreductase, iron/as 99.9 3.8E-22 1.3E-26 166.2 9.7 106 54-170 2-113 (280)
5 1dcs_A Deacetoxycephalosporin 99.9 9.8E-23 3.3E-27 172.0 5.2 96 54-155 3-106 (311)
6 1w9y_A 1-aminocyclopropane-1-c 99.8 2.7E-22 9.3E-27 170.0 3.9 94 54-155 2-95 (319)
7 4ay7_A Methylcobalamin\: coenz 68.4 10 0.00036 31.1 6.2 47 64-113 298-348 (348)
8 3pnt_A NAD+-glycohydrolase; gl 67.6 5.7 0.0002 31.3 4.1 51 36-96 189-241 (268)
9 2dbn_A Hypothetical protein YB 61.7 4.9 0.00017 35.2 2.9 55 52-113 97-151 (461)
10 1m5a_B Insulin B chain; alpha 57.3 12 0.00039 20.2 2.9 18 74-91 10-27 (30)
11 3o2g_A Gamma-butyrobetaine dio 53.6 5.8 0.0002 33.5 2.0 52 55-114 122-173 (388)
12 2opi_A L-fuculose-1-phosphate 52.5 7.5 0.00026 29.9 2.4 36 55-96 125-160 (212)
13 1e4c_P L-fuculose 1-phosphate 46.4 10 0.00036 29.1 2.3 36 55-96 122-157 (215)
14 2do1_A Nuclear protein HCC-1; 45.3 24 0.00082 21.6 3.4 32 76-110 15-46 (55)
15 1pvt_A Sugar-phosphate aldolas 43.3 14 0.00047 28.9 2.6 37 54-96 160-196 (238)
16 2fk5_A Fuculose-1-phosphate al 43.2 13 0.00043 28.4 2.3 36 55-96 117-153 (200)
17 1otj_A Alpha-ketoglutarate-dep 43.1 21 0.00071 28.2 3.7 50 53-111 15-64 (283)
18 1r3s_A URO-D, uroporphyrinogen 40.1 57 0.0019 26.9 6.1 46 66-111 311-360 (367)
19 2v9l_A Rhamnulose-1-phosphate 39.4 14 0.00047 29.7 2.1 36 55-96 179-214 (274)
20 2irp_A Putative aldolase class 39.4 13 0.00046 28.3 1.9 35 55-96 139-176 (208)
21 1zav_A 50S ribosomal protein L 37.8 90 0.0031 23.2 6.4 42 70-111 6-48 (180)
22 1oih_A Putative alkylsulfatase 37.5 29 0.00099 27.7 3.8 52 53-113 25-77 (301)
23 1otf_A 4-oxalocrotonate tautom 35.4 28 0.00094 20.5 2.6 17 68-84 12-28 (62)
24 2j01_J 50S ribosomal protein L 35.1 93 0.0032 22.9 6.0 40 71-110 5-46 (173)
25 2opa_A Probable tautomerase YW 34.6 29 0.00099 20.3 2.6 28 57-84 1-28 (61)
26 4exq_A UPD, URO-D, uroporphyri 34.2 76 0.0026 26.3 6.0 46 66-111 308-358 (368)
27 3ocr_A Class II aldolase/adduc 34.2 21 0.00073 28.7 2.4 37 55-96 156-192 (273)
28 2x4k_A 4-oxalocrotonate tautom 31.0 33 0.0011 20.0 2.4 29 56-84 3-31 (63)
29 3jsy_A Acidic ribosomal protei 30.1 97 0.0033 23.8 5.6 39 71-109 4-43 (213)
30 3m20_A 4-oxalocrotonate tautom 29.9 55 0.0019 19.5 3.4 27 57-84 1-27 (62)
31 1m1c_A GAG protein, major coat 28.5 60 0.0021 29.3 4.4 44 37-87 167-222 (680)
32 2rdq_A 1-deoxypentalenic acid 28.3 77 0.0026 24.6 4.8 36 77-113 22-57 (288)
33 4f3y_A DHPR, dihydrodipicolina 27.8 49 0.0017 26.5 3.6 39 75-113 111-149 (272)
34 4f21_A Carboxylesterase/phosph 27.5 1.1E+02 0.0037 23.4 5.5 40 75-114 201-246 (246)
35 3ghf_A Septum site-determining 27.1 67 0.0023 22.4 3.8 44 55-104 47-92 (120)
36 3pvj_A Alpha-ketoglutarate-dep 27.1 46 0.0016 26.4 3.2 51 53-112 13-63 (277)
37 3ry0_A Putative tautomerase; o 26.0 49 0.0017 19.9 2.6 29 57-85 1-29 (65)
38 3qy9_A DHPR, dihydrodipicolina 26.0 56 0.0019 25.6 3.5 40 74-113 89-128 (243)
39 3abf_A 4-oxalocrotonate tautom 24.4 49 0.0017 19.4 2.4 29 57-85 2-30 (64)
40 3ijp_A DHPR, dihydrodipicolina 24.0 67 0.0023 26.0 3.7 39 75-113 126-164 (288)
41 1j93_A UROD, uroporphyrinogen 23.9 69 0.0024 26.1 3.9 44 67-110 303-350 (353)
42 1v7z_A Creatininase, creatinin 23.5 1.5E+02 0.0051 23.2 5.7 41 69-109 92-136 (260)
43 1gyx_A YDCE, B1461, hypothetic 23.2 68 0.0023 20.0 3.0 29 57-85 1-30 (76)
44 3mb2_A 4-oxalocrotonate tautom 22.4 57 0.0019 20.1 2.4 28 57-84 2-29 (72)
45 2eja_A URO-D, UPD, uroporphyri 22.3 58 0.002 26.3 3.1 46 66-111 285-335 (338)
46 3r1j_A Alpha-ketoglutarate-dep 22.0 82 0.0028 25.4 3.9 53 53-114 19-72 (301)
47 1ub3_A Aldolase protein; schif 21.9 71 0.0024 24.7 3.3 39 58-96 91-129 (220)
48 3m4r_A Uncharacterized protein 21.6 40 0.0014 26.1 1.8 34 56-96 156-190 (222)
49 2wfu_B Probable insulin-like p 21.5 41 0.0014 17.4 1.2 14 74-88 9-22 (26)
50 1vcv_A Probable deoxyribose-ph 21.5 76 0.0026 24.8 3.5 39 58-96 86-124 (226)
51 3m21_A Probable tautomerase HP 21.3 69 0.0024 19.3 2.6 16 68-83 15-30 (67)
52 2opw_A Phyhd1 protein; double- 21.3 1.1E+02 0.0037 23.8 4.5 35 78-113 7-41 (291)
53 3vk5_A MOEO5; TIM barrel, tran 21.1 1.7E+02 0.0057 23.9 5.5 58 56-119 42-102 (286)
54 3cyv_A URO-D, UPD, uroporphyri 20.9 1.1E+02 0.0038 24.8 4.5 45 67-111 299-348 (354)
55 2ld7_A Histone deacetylase com 20.3 1.6E+02 0.0055 19.8 4.5 55 52-121 15-70 (94)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=99.95 E-value=4.3e-28 Score=208.33 Aligned_cols=122 Identities=27% Similarity=0.459 Sum_probs=104.6
Q ss_pred hcCCCCCCccCCCCcc-C-CC---------CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHH
Q 042168 34 KQANLPTWFIWPNLEF-A-QE---------EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLK 102 (179)
Q Consensus 34 ~~~~iP~~~v~p~~~~-~-~~---------~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~ 102 (179)
+..+||.+||||.+++ . .. ...||||||+.|.+++++.|.+++++|.+||++||||||+||||+.++++
T Consensus 14 ~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~ 93 (356)
T 1gp6_A 14 GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLME 93 (356)
T ss_dssp TCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHH
T ss_pred CCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHH
Confidence 3568999999997765 2 11 23699999999987777778899999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHccCCCCC--CCCCCCCCCCCCCcCCCCCceeeeeeeec
Q 042168 103 AASEEIDSIFKLPLERKLGIPRKT--GLPQGYSGGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 103 ~~~~~~~~FF~LP~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
++++.+++||+||.|+|+++.+.. ...+||+........+..||||+|+++..
T Consensus 94 ~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~ 148 (356)
T 1gp6_A 94 RVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY 148 (356)
T ss_dssp HHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecC
Confidence 999999999999999999998754 36899988765555667899999999865
No 2
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=99.91 E-value=2.3e-25 Score=188.06 Aligned_cols=118 Identities=13% Similarity=0.129 Sum_probs=93.3
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGY 132 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY 132 (179)
...||||||+.+.+ .+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.+..+..+||
T Consensus 4 ~~~iPvIDls~~~~----~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy 79 (312)
T 3oox_A 4 TSAIDPVSFSLYAK----DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY 79 (312)
T ss_dssp CCSSCCEETHHHHH----CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEE
T ss_pred CCCCCeEEChHhcc----cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCcccc
Confidence 35799999998753 46678999999999999999999999999999999999999999999999997655567999
Q ss_pred CCCCCCCc--CCCCCceeeeeeeec-CCCChhHHHHHHhhhhCccc
Q 042168 133 SGGHAERF--TKNLTRNETFTFDYY-ENDAEPLVVDHFKSVLGQDF 175 (179)
Q Consensus 133 ~~~~~~~~--~~~~dwkE~f~~~~~-~~~~~~~~~~~~~~~~~~~~ 175 (179)
.+.+.+.. ....||||+|+++.. +.+.+. ...+..++||++.
T Consensus 80 ~~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~-~~~~~~n~wP~~~ 124 (312)
T 3oox_A 80 IPFGVETAKGADHYDLKEFWHMGRDLPPGHRF-RAHMADNVWPAEI 124 (312)
T ss_dssp ECCCCCCSTTSCSCCCCEEEEECCCCCTTCGG-GGTSCCCCCCTTS
T ss_pred ccccceecCCCCCCCceeeeEeecCCCcCCcc-hhccCCCCCCCcC
Confidence 87765543 346899999999765 332221 2234456777543
No 3
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=99.89 E-value=1.1e-23 Score=179.09 Aligned_cols=94 Identities=17% Similarity=0.334 Sum_probs=82.9
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHH-hCCCHHHHccCCCCCCCCCCC
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSI-FKLPLERKLGIPRKTGLPQGY 132 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~F-F~LP~e~K~~~~~~~~~~~GY 132 (179)
..||||||+.|.+++++.+.+++++|++||++||||||+|||| +++++++.+++| |+||.|+|+++.+ +||
T Consensus 7 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~-----~Gy 78 (331)
T 1odm_A 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAI-----RAY 78 (331)
T ss_dssp CCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBC-----TTT
T ss_pred CCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhh-----cCC
Confidence 4699999999988887788899999999999999999999999 999999999999 9999999999875 688
Q ss_pred CCCCCCCcC--------CCCCceeeeeeeec
Q 042168 133 SGGHAERFT--------KNLTRNETFTFDYY 155 (179)
Q Consensus 133 ~~~~~~~~~--------~~~dwkE~f~~~~~ 155 (179)
.+.+.+... +..||||+|+++..
T Consensus 79 ~~~~~e~~~~~~~~~~~~~~d~kE~~~~~~~ 109 (331)
T 1odm_A 79 NKEHQDQVRAGYYLSIPGKKAVESFCYLNPN 109 (331)
T ss_dssp CTTCTTCSSSEEECCBTTTBCCEEEEECCTT
T ss_pred CcCCccccccccccccCCCCChhheEecccC
Confidence 776654321 46799999999876
No 4
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=99.87 E-value=3.8e-22 Score=166.25 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=81.5
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCCC
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGYS 133 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY~ 133 (179)
+.||||||+.. +++++|.+||++||||||+||||+.++++++++.+++||+| ++|+++.+.++..+||.
T Consensus 2 ~~IPvIDls~~---------~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~~~~~~~~GY~ 70 (280)
T 3on7_A 2 MKLETIDYRAA---------DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFMFNRETHDGFF 70 (280)
T ss_dssp --CCEEETTST---------THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGBCCTTTCCEEE
T ss_pred CCCCEEECCCh---------hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhccCCCCCCccc
Confidence 47999999863 24789999999999999999999999999999999999998 79999887667789998
Q ss_pred CCC-CCCc--CCCCCceeeeeeeec---CCCChhHHHHHHhhh
Q 042168 134 GGH-AERF--TKNLTRNETFTFDYY---ENDAEPLVVDHFKSV 170 (179)
Q Consensus 134 ~~~-~~~~--~~~~dwkE~f~~~~~---~~~~~~~~~~~~~~~ 170 (179)
+.+ .+.. ....||||+|++... +.+..+.+.+|+..+
T Consensus 71 ~~~~~e~~~~~~~~D~kE~~~~~p~~~~p~~fr~~~~~y~~~~ 113 (280)
T 3on7_A 71 PASISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKA 113 (280)
T ss_dssp CCC--------CCCCSCEEEEECTTSCCCGGGHHHHHHHHHHH
T ss_pred cCccccccCCCCcccHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 765 3322 246799999998644 223334466676544
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=99.86 E-value=9.8e-23 Score=172.02 Aligned_cols=96 Identities=17% Similarity=0.277 Sum_probs=74.7
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCC-HHHHccCCCCC-CCCCC
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLP-LERKLGIPRKT-GLPQG 131 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP-~e~K~~~~~~~-~~~~G 131 (179)
..||||||+.+.+++.. ++|.+||++||||||+||||+.++++++++++++||+|| .|+|+++.+.. ...+|
T Consensus 3 ~~iPvIDls~l~~~~~~------~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~G 76 (311)
T 1dcs_A 3 TTVPTFSLAELQQGLHQ------DEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRG 76 (311)
T ss_dssp CCCCEEEHHHHHTTCSH------HHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSSE
T ss_pred CCCcEEEchhhcCCCHH------HHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCCc
Confidence 46999999987655432 289999999999999999999999999999999999999 99999998753 56799
Q ss_pred CCCCCCCCc------CCCCCceeeeeeeec
Q 042168 132 YSGGHAERF------TKNLTRNETFTFDYY 155 (179)
Q Consensus 132 Y~~~~~~~~------~~~~dwkE~f~~~~~ 155 (179)
|.+.+.+.. .+..||||+|+++..
T Consensus 77 y~~~~~e~~~~~~~~~~~~d~~E~~~~~~~ 106 (311)
T 1dcs_A 77 FTGLESESTAQITNTGSYSDYSMCYSMGTA 106 (311)
T ss_dssp EEEC-----------------CEEEEECSS
T ss_pred eeeccccccccccCCCCCCCcceeeeccCC
Confidence 988766533 457899999999864
No 6
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=99.85 E-value=2.7e-22 Score=169.95 Aligned_cols=94 Identities=21% Similarity=0.415 Sum_probs=79.8
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCCCHHHHccCCCCCCCCCCCC
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKLPLERKLGIPRKTGLPQGYS 133 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~~~GY~ 133 (179)
..||||||+.+.. ..+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.+. .+||.
T Consensus 2 ~~iPvIDls~l~~---~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~---~~Gy~ 75 (319)
T 1w9y_A 2 ENFPIISLDKVNG---VERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVA---SKALE 75 (319)
T ss_dssp CCCCEEEGGGGGS---TTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHT
T ss_pred CCCCEEECcccCc---ccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC---CCCCC
Confidence 3699999998852 34678999999999999999999999999999999999999999999999997643 24887
Q ss_pred CCCCCCcCCCCCceeeeeeeec
Q 042168 134 GGHAERFTKNLTRNETFTFDYY 155 (179)
Q Consensus 134 ~~~~~~~~~~~dwkE~f~~~~~ 155 (179)
+...+ .+..||+|+|+++..
T Consensus 76 ~~~~e--~~~~d~ke~~~~~~~ 95 (319)
T 1w9y_A 76 GVQAE--VTDMDWESTFFLKHL 95 (319)
T ss_dssp TCCCC--GGGCCCCEEEEEEEE
T ss_pred ccccc--CCCCChhhheeeecC
Confidence 65432 356899999999854
No 7
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=68.43 E-value=10 Score=31.14 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=33.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCC----HHHHHHHHHHHHHHhC
Q 042168 64 FISGDERATAEAIEHVRGACVNHGLFQVINHGVD----ASLLKAASEEIDSIFK 113 (179)
Q Consensus 64 l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~----~~li~~~~~~~~~FF~ 113 (179)
|..++++. +.+++.+.++.-||..=.+|||+ .+-+..+.+++++||+
T Consensus 298 l~~g~~e~---i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey~A 348 (348)
T 4ay7_A 298 LLPGPVDK---IKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEFYA 348 (348)
T ss_dssp CTTCCHHH---HHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHHTC
T ss_pred hcCCCHHH---HHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHhcC
Confidence 34455543 44445555667788777789975 4789999999999985
No 8
>3pnt_A NAD+-glycohydrolase; glycohydrolase, NAD+, virulence factor, hydrolase-hydrolase complex; 2.80A {Streptococcus pyogenes}
Probab=67.64 E-value=5.7 Score=31.33 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=39.0
Q ss_pred CCCCCCccCCCCcc--CCCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 36 ANLPTWFIWPNLEF--AQEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 36 ~~iP~~~v~p~~~~--~~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.+||.+-.|....- ...++-.|.||..++. .+.+..|.+..|+|-|+|--|
T Consensus 189 LNIPG~qTwaGkni~~SeSELimPSId~kgls----------~~dvLaaIe~kGYyEI~nPti 241 (268)
T 3pnt_A 189 LNIPGCQTWSGKHIENSESELIFPSISVKDLK----------SKAVLAEIDAKGYFEIIDPTI 241 (268)
T ss_dssp TCCTTTCCCCTTCGGGCCCCEEECEEECTTCC----------HHHHHHHHHHHSCCEEESCEE
T ss_pred cCCCcccccccccccccccceeecccccCCCc----------HHHHHHHHhhcCeEEecCCeE
Confidence 47898888877665 2356678999999875 445778888899999998643
No 9
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=61.74 E-value=4.9 Score=35.21 Aligned_cols=55 Identities=9% Similarity=0.110 Sum_probs=41.3
Q ss_pred CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhC
Q 042168 52 EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 52 ~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 113 (179)
...-||.||++++.++. +.+...+..++.|++.|.|. ||.+......+.+.+|.+
T Consensus 97 G~~~iP~i~f~di~~~~------~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~ 151 (461)
T 2dbn_A 97 GDAVWPVLSYADIKAGH------VTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLD 151 (461)
T ss_dssp TCCSSCEEEHHHHHHTC------CCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCCcceecHHHhcCCC------CCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHH
Confidence 45679999998775432 22445677889999988877 899888888887777764
No 10
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=57.31 E-value=12 Score=20.24 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhhccEEEE
Q 042168 74 EAIEHVRGACVNHGLFQV 91 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GFF~v 91 (179)
++++.+.-.|.+-|||+.
T Consensus 10 ~LVdaL~~vCgdRGF~~~ 27 (30)
T 1m5a_B 10 HLVEALYLVCGERGFFYT 27 (30)
T ss_dssp HHHHHHHHHHGGGCEEEC
T ss_pred HHHHHHHHHhccCccccC
Confidence 678889999999999973
No 11
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=53.58 E-value=5.8 Score=33.51 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=38.6
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFKL 114 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 114 (179)
++|.||++.++.. .+...++.+|+.++|+..+.+-.++.+. ..+.+++|=.+
T Consensus 122 ~~~~~~~~~~l~~-----d~~~~~~~~~l~~~Gvv~frg~~~~~~~---~~~~a~~~G~l 173 (388)
T 3o2g_A 122 QLPTLDFEDVLRY-----DEHAYKWLSTLKKVGIVRLTGASDKPGE---VSKLGKRMGFL 173 (388)
T ss_dssp CCCEEEHHHHHHC-----HHHHHHHHHHHHHHSEEEEECCCSSTTH---HHHHHHHHSCC
T ss_pred CCCccCHHHHhcC-----HHHHHHHHHHHHhcCEEEEeCCCCCHHH---HHHHHHHhCCC
Confidence 6899999876532 2567889999999999999999887553 44556666443
No 12
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=52.51 E-value=7.5 Score=29.90 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=27.0
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||+++..... +. ++++.+.+++.+.-.+.|.|||+
T Consensus 125 ~v~~~~y~~~g--~~----~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPG--SP----ELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTT--CH----HHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCC--cH----HHHHHHHHHhccCCEEEEcCCCc
Confidence 68988876532 22 46777888888888899999996
No 13
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=46.37 E-value=10 Score=29.11 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=26.8
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||+++..... +. ++++.+.+++.+.-.+.|.|||+
T Consensus 122 ~ip~~~y~~~g--~~----~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 122 SIPCAPYATFG--TR----ELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp CBCEECCCCTT--CH----HHHHHHHHHTSSCSEEEETTTEE
T ss_pred CcceeeCCCCC--cH----HHHHHHHHHhccCCEEEEcCCCc
Confidence 68888876532 22 56677888888888899999996
No 14
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=45.27 E-value=24 Score=21.58 Aligned_cols=32 Identities=13% Similarity=0.484 Sum_probs=25.1
Q ss_pred HHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHH
Q 042168 76 IEHVRGACVNHGLFQVINHGVDASLLKAASEEIDS 110 (179)
Q Consensus 76 ~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~ 110 (179)
+..|.+.|+.+| +.--|.-.+||+++......
T Consensus 15 V~eLK~~L~~rG---L~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 15 LAELKQECLARG---LETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp HHHHHHHHHHHT---CCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCCCcHHHHHHHHHHHHhc
Confidence 677899999999 44577888899988776554
No 15
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=43.25 E-value=14 Score=28.87 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=27.6
Q ss_pred CCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 54 HKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 54 ~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
..||++++... ++. ++++.+.+++++.-.+.+.|||+
T Consensus 160 ~~v~~~~y~~~--g~~----ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 160 QGISVVEFEKP--GSV----ELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp SCCEEECCCST--TCH----HHHHHHHHHTSSCSEEEETTSCE
T ss_pred CCceEecCCCC--CcH----HHHHHHHHHhccCCEEEEcCCCc
Confidence 36999988653 222 46677888888888899999996
No 16
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=43.15 E-value=13 Score=28.44 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=25.8
Q ss_pred CCcee-ecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLI-DLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvI-Dl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++ ++.... +. ++++.+.+++.+.-.+.|.|||+
T Consensus 117 ~ip~~~~y~~~g--~~----ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 117 EVPVLAPKTVSA--TE----EAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp CEEEECCSCCSS--SH----HHHHHHHHHHHHCSEEEETTTEE
T ss_pred CceEecCCCCCC--cH----HHHHHHHHHhCcCCEEEECCCCc
Confidence 68998 665432 22 45667777777778899999995
No 17
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=43.13 E-value=21 Score=28.21 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=35.7
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHH
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSI 111 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~F 111 (179)
..+|+-|||+..++ . +..++|.+++.++|+..+.+-.++.+.. .+.+++|
T Consensus 15 Gaei~gvdl~~~l~--~----~~~~~l~~~l~~~Gvv~frg~~~~~~~~---~~~~~~~ 64 (283)
T 1otj_A 15 GAQISGADLTRPLS--D----NQFEQLYHAVLRHQVVFLRDQAITPQQQ---RALAQRF 64 (283)
T ss_dssp CEEEESCCSSSCCC--H----HHHHHHHHHHHHHSEEEECSCCCCHHHH---HHHHHTT
T ss_pred eEEEECCCcCccCC--H----HHHHHHHHHHHHCCEEEECCCCCCHHHH---HHHHHHh
Confidence 34577789987552 2 3477899999999999999988876543 3444554
No 18
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=40.14 E-value=57 Score=26.86 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHHHHhhhccEEEEEcCCCCH----HHHHHHHHHHHHH
Q 042168 66 SGDERATAEAIEHVRGACVNHGLFQVINHGVDA----SLLKAASEEIDSI 111 (179)
Q Consensus 66 ~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~----~li~~~~~~~~~F 111 (179)
.++++...+.++++.+.+..-||..=.+|||+. +-+..+.++++++
T Consensus 311 ~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~p~env~a~v~~v~~~ 360 (367)
T 1r3s_A 311 YASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH 360 (367)
T ss_dssp GSCHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeeecCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 356666666666666665546888888899744 6777777777775
No 19
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=39.42 E-value=14 Score=29.69 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=27.1
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||+++.... ++. ++++.+.+++.+.-.+.+.|||+
T Consensus 179 ~v~v~~y~~~--g~~----ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVP--GTD----AIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCS--SSH----HHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCC--CCH----HHHHHHHHHHccCCEEEEcCCCc
Confidence 5888887543 222 56777888888888899999996
No 20
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=39.41 E-value=13 Score=28.26 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=24.3
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhcc---EEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHG---LFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~G---FF~v~nHGI 96 (179)
.||+++.. .+ ..++++.+.+++.+.+ .+.|.|||+
T Consensus 139 ~vp~~~~~---~g----~~~La~~i~~~l~~~~~~~avll~nHG~ 176 (208)
T 2irp_A 139 KIPIFPNE---QN----IPLLAKEVENYFKTSEDKYGFLIRGHGL 176 (208)
T ss_dssp EEEEECCC---SC----HHHHHHHHHHHHHHCSCCSCEEETTTEE
T ss_pred ceeeecCC---CC----HHHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 57777653 11 2356777888887765 788899996
No 21
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=37.76 E-value=90 Score=23.20 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhhccEEEEEcC-CCCHHHHHHHHHHHHHH
Q 042168 70 RATAEAIEHVRGACVNHGLFQVINH-GVDASLLKAASEEIDSI 111 (179)
Q Consensus 70 ~~~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~F 111 (179)
+...+++++|.+.+++...++|+++ |++.+.+.++....+.-
T Consensus 6 ~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~ 48 (180)
T 1zav_A 6 QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREK 48 (180)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 3466788999999999998888875 89999888888877754
No 22
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=37.46 E-value=29 Score=27.69 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=36.6
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCC-CCHHHHHHHHHHHHHHhC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHG-VDASLLKAASEEIDSIFK 113 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG-I~~~li~~~~~~~~~FF~ 113 (179)
..+|+-|||+..++ . +..++|.+++.++|+..+.+-. ++. +...+.++.|=.
T Consensus 25 Gaei~gvdl~~~l~--~----~~~~~l~~~l~~~Gvv~fRg~~~l~~---~~~~~~~~~fG~ 77 (301)
T 1oih_A 25 GAEIRGVKLSPDLD--A----ATVEAIQAALVRHKVIFFRGQTHLDD---QSQEGFAKLLGE 77 (301)
T ss_dssp CEEEESCCCCTTCC--H----HHHHHHHHHHHHHSEEEECCCTTCCH---HHHHHHHHTTSC
T ss_pred ceEEeCCCccccCC--H----HHHHHHHHHHHHCCEEEECCCCCCCH---HHHHHHHHHhCC
Confidence 34577789987542 2 3477899999999999999887 875 344455555543
No 23
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=35.39 E-value=28 Score=20.47 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=8.4
Q ss_pred ChHHHHHHHHHHHHHhh
Q 042168 68 DERATAEAIEHVRGACV 84 (179)
Q Consensus 68 ~~~~~~~~~~~l~~Ac~ 84 (179)
+.+.++++++.|.+++.
T Consensus 12 s~e~k~~l~~~i~~~l~ 28 (62)
T 1otf_A 12 TDEQKETLIRQVSEAMA 28 (62)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44445555555554444
No 24
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=35.13 E-value=93 Score=22.95 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhhcc-EEEEEc-CCCCHHHHHHHHHHHHH
Q 042168 71 ATAEAIEHVRGACVNHG-LFQVIN-HGVDASLLKAASEEIDS 110 (179)
Q Consensus 71 ~~~~~~~~l~~Ac~~~G-FF~v~n-HGI~~~li~~~~~~~~~ 110 (179)
...+++++|.+.+++.. .++|++ +|++.+.+.++....+.
T Consensus 5 ~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~ 46 (173)
T 2j01_J 5 RNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQ 46 (173)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45678889999999888 666665 58998888888877764
No 25
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=34.64 E-value=29 Score=20.34 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=13.0
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~ 84 (179)
|.|.+.-+...+.+.++++++.|.+++.
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~ 28 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVK 28 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4444433222344555555555555544
No 26
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=34.24 E-value=76 Score=26.30 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHHHHHhh-hccEEEEEcCCCC----HHHHHHHHHHHHHH
Q 042168 66 SGDERATAEAIEHVRGACV-NHGLFQVINHGVD----ASLLKAASEEIDSI 111 (179)
Q Consensus 66 ~~~~~~~~~~~~~l~~Ac~-~~GFF~v~nHGI~----~~li~~~~~~~~~F 111 (179)
.++++...+.++++.+++. .-||+.=.+|||+ .+-+..+.++++++
T Consensus 308 ~gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~p~tp~Env~a~veav~~~ 358 (368)
T 4exq_A 308 FAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRH 358 (368)
T ss_dssp GSCHHHHHHHHHHHHHHHCSCSCEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHHh
Confidence 3566667777777777776 4689988999985 46677777777775
No 27
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=34.20 E-value=21 Score=28.66 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=26.7
Q ss_pred CCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 55 KEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 55 ~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
.||++|+..+. .+. ++++.|.+++.+.-.+.|.|||+
T Consensus 156 ~v~~~~y~~~~-~~~----el~~~i~~~l~~~~avlL~nHG~ 192 (273)
T 3ocr_A 156 RVAYHGYEGIA-LDL----SERERLVADLGDKSVMILRNHGL 192 (273)
T ss_dssp TEEEECCCCSS-CCH----HHHHHHHHHHTTCSEEEETTTEE
T ss_pred CEEEECCCCCC-CCH----HHHHHHHHHhCcCCEEEEcCCce
Confidence 58888887642 122 34666777788888999999995
No 28
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=30.96 E-value=33 Score=19.95 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=14.4
Q ss_pred CceeecCCCCCCChHHHHHHHHHHHHHhh
Q 042168 56 EPLIDLQGFISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 56 iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~ 84 (179)
-|.|.+.-+...+.+.++++++.|.+++.
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~ 31 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVE 31 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 35555543333344445555555555544
No 29
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=30.13 E-value=97 Score=23.81 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhhccEEEEEc-CCCCHHHHHHHHHHHH
Q 042168 71 ATAEAIEHVRGACVNHGLFQVIN-HGVDASLLKAASEEID 109 (179)
Q Consensus 71 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~ 109 (179)
...+.+++|.+.+.++..++|++ +|+..+.+.++....+
T Consensus 4 ~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr 43 (213)
T 3jsy_A 4 WKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIR 43 (213)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHh
Confidence 34566777777777776666665 5777777776666665
No 30
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=29.95 E-value=55 Score=19.52 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=14.4
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~ 84 (179)
|+|.+.- ...+.++++++++.|.+++.
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~ 27 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAA 27 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHH
Confidence 4454443 33355566666666665554
No 31
>1m1c_A GAG protein, major coat protein; dsRNA virus structure, RNA-protein interaction, mRNA decapping, L-A virus, QUAI-equivalence; 3.50A {Saccharomyces cerevisiae virus l-a} SCOP: e.42.1.1
Probab=28.54 E-value=60 Score=29.28 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCCCCccCCCCcc------------CCCCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhcc
Q 042168 37 NLPTWFIWPNLEF------------AQEEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHG 87 (179)
Q Consensus 37 ~iP~~~v~p~~~~------------~~~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~G 87 (179)
..|..|-||..+. ..+..+.|.||+.+|.. +.++-|..+|.+|-
T Consensus 167 ~~~~~w~wp~~~~s~syP~w~~~~e~~P~~d~p~iDlrgLt~-------eEa~~Vl~m~seW~ 222 (680)
T 1m1c_A 167 AGPTQFAWPSDRSTDSYPDWAQFSESFPSIDVPYLDVRPLTV-------TEVNFVLMMMSKWH 222 (680)
T ss_dssp TSCSSCCCSSCTTTSCCCBCCEECCSSCSSSSCEEECTTSCH-------HHHHHHHHHTSCBC
T ss_pred ccccccCCCCccccccccchhhhhhcccccCCceEeccCCCH-------HHHHHHHHHHhhhc
Confidence 4556788988764 02566899999998852 34566788998873
No 32
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=28.25 E-value=77 Score=24.63 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.2
Q ss_pred HHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhC
Q 042168 77 EHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 77 ~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 113 (179)
+++.+.+.+.||+.|.|- ++.+.++++.+.+.++++
T Consensus 22 ~~~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~~ 57 (288)
T 2rdq_A 22 AALDSFYEEHGYLFLRNV-LDRDLVKTVAEQMREGLV 57 (288)
T ss_dssp HHHHHHHHHHSEEEECSC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 346788999999999875 899999999999988763
No 33
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=27.79 E-value=49 Score=26.46 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhC
Q 042168 75 AIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 75 ~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 113 (179)
..++|.++|++.+.++--|-++--.++-++.+.+.++|.
T Consensus 111 ~~~~L~~aa~~~~vv~a~N~s~Gv~l~~~~~~~aa~~l~ 149 (272)
T 4f3y_A 111 QKAQLRAAGEKIALVFSANMSVGVNVTMKLLEFAAKQFA 149 (272)
T ss_dssp HHHHHHHHTTTSEEEECSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccCCEEEECCCCHHHHHHHHHHHHHHHhcC
Confidence 457799999999999999999999999999998888884
No 34
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=27.55 E-value=1.1e+02 Score=23.42 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhccE---EEE---EcCCCCHHHHHHHHHHHHHHhCC
Q 042168 75 AIEHVRGACVNHGL---FQV---INHGVDASLLKAASEEIDSIFKL 114 (179)
Q Consensus 75 ~~~~l~~Ac~~~GF---F~v---~nHGI~~~li~~~~~~~~~FF~L 114 (179)
.++++.+.+++.|+ |.. .+|+|+.+.++++.+-.++-|+|
T Consensus 201 ~~~~~~~~L~~~g~~v~~~~y~g~gH~i~~~~l~~~~~fL~k~l~l 246 (246)
T 4f21_A 201 LGHDLSDKLKVSGFANEYKHYVGMQHSVCMEEIKDISNFIAKTFKI 246 (246)
T ss_dssp HHHHHHHHHHTTTCCEEEEEESSCCSSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCCccCHHHHHHHHHHHHHHhCC
Confidence 45556666666664 333 36999999988887776665543
No 35
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=27.09 E-value=67 Score=22.42 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=28.5
Q ss_pred CCc-eeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHH-HHHHH
Q 042168 55 KEP-LIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDAS-LLKAA 104 (179)
Q Consensus 55 ~iP-vIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~-li~~~ 104 (179)
..| |||++.+... . -...|.+.|+++|+..|-=-|.+.+ +.+.+
T Consensus 47 ~aPVVlDl~~l~~~--~----dl~~L~~~l~~~gl~~vGV~g~~~~~~~~~a 92 (120)
T 3ghf_A 47 HAPVVINVSGLESP--V----NWPELHKIVTSTGLRIIGVSGCKDASLKVEI 92 (120)
T ss_dssp TCEEEEEEEECCSS--C----CHHHHHHHHHTTTCEEEEEESCCCHHHHHHH
T ss_pred CCcEEEEccccCCh--H----HHHHHHHHHHHcCCEEEEEeCCCcHHHHHHH
Confidence 455 6799887521 1 1566889999999999865554433 44433
No 36
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*
Probab=27.05 E-value=46 Score=26.44 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=36.3
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHh
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIF 112 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 112 (179)
.++|.=|||+..++ . +..++|.+|+.++|+..+.+-.++.+. ..+.+++|=
T Consensus 13 Gaei~gvdl~~~l~--~----~~~~~l~~~l~~~gvv~fR~q~l~~~~---~~~fa~~fG 63 (277)
T 3pvj_A 13 GAQISGVDISRDIS--A----EERDAIEQALLQHQVLFLRDQPINPEQ---QARFAARFG 63 (277)
T ss_dssp CEEEESCCTTSCCC--H----HHHHHHHHHHHHHSEEEESSCCCCHHH---HHHHHGGGS
T ss_pred eEEEeCCCccccCC--H----HHHHHHHHHHHHCCEEEECCCCCCHHH---HHHHHHHhC
Confidence 34677789987542 2 457789999999999999998887653 334555543
No 37
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=26.04 E-value=49 Score=19.86 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=14.3
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACVN 85 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~~ 85 (179)
|+|.+.-+...+.+.++++++.|.+++.+
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~ 29 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHE 29 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 34444322233455566666666655543
No 38
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=26.01 E-value=56 Score=25.64 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhC
Q 042168 74 EAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 113 (179)
+..++|.++|++.+.++--|-++--.++-++.+.+.++|.
T Consensus 89 e~~~~l~~aa~~~~v~~a~N~S~Gv~l~~~~~~~aa~~l~ 128 (243)
T 3qy9_A 89 KLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLD 128 (243)
T ss_dssp HHHHHHHHHTTTSEEEECSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCEEEECCccHHHHHHHHHHHHHHHhcC
Confidence 4478899999999999999999999999999888888874
No 39
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=24.38 E-value=49 Score=19.45 Aligned_cols=29 Identities=3% Similarity=0.050 Sum_probs=15.1
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACVN 85 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~~ 85 (179)
|+|.+.-+...+.++.++++++|.+++.+
T Consensus 2 P~i~i~~~~g~s~eqk~~l~~~lt~~l~~ 30 (64)
T 3abf_A 2 VVLKVTLLEGRPPEKKRELVRRLTEMASR 30 (64)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 45555433333445556666666666554
No 40
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=23.99 E-value=67 Score=26.00 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhC
Q 042168 75 AIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 75 ~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 113 (179)
..++|.++|++.++|+--|-++--.++-++.+.+.++|.
T Consensus 126 ~~~~L~~aa~~~~~~~a~N~SiGv~ll~~l~~~aa~~l~ 164 (288)
T 3ijp_A 126 EEAQIADFAKYTTIVKSGNMSLGVNLLANLVKRAAKALD 164 (288)
T ss_dssp HHHHHHHHHTTSEEEECSCCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCcCCEEEECCCcHHHHHHHHHHHHHHHhcC
Confidence 356788999999999999999988998888888888875
No 41
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=23.94 E-value=69 Score=26.06 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHHhhhccEEEEEcCCC----CHHHHHHHHHHHHH
Q 042168 67 GDERATAEAIEHVRGACVNHGLFQVINHGV----DASLLKAASEEIDS 110 (179)
Q Consensus 67 ~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI----~~~li~~~~~~~~~ 110 (179)
++++...+.++++.+.+..-||..=.+||| +.+-+..+.+++++
T Consensus 303 ~~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~~~~~~enl~a~ve~v~~ 350 (353)
T 1j93_A 303 GSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKG 350 (353)
T ss_dssp SCHHHHHHHHHHHHHHHCSSSEEBCBSSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 556655556666666554457877778997 44667777777665
No 42
>1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} SCOP: c.125.1.1 PDB: 1j2u_A 1j2t_A 3a6d_A 3a6j_A 3a6k_A 3a6l_A 3a6g_A 3a6f_A 3a6e_A 3a6h_A 1q3k_A
Probab=23.53 E-value=1.5e+02 Score=23.24 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHhhhcc---EEEEEcCCCCHHHHHHHHH-HHH
Q 042168 69 ERATAEAIEHVRGACVNHG---LFQVINHGVDASLLKAASE-EID 109 (179)
Q Consensus 69 ~~~~~~~~~~l~~Ac~~~G---FF~v~nHGI~~~li~~~~~-~~~ 109 (179)
++.-.+++..|.+.+.++| ++.|-+||=....++.+.+ ..+
T Consensus 92 ~~tl~~~l~di~~sl~~~GfrrivivNgHGGN~~~l~~a~~~~l~ 136 (260)
T 1v7z_A 92 GATLTGTVQDIIRELARHGARRLVLMNGHYENSMFIVEGIDLALR 136 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4556678888999999999 5666779977777776655 443
No 43
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=23.21 E-value=68 Score=19.97 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=18.7
Q ss_pred ceeecCCCCCC-ChHHHHHHHHHHHHHhhh
Q 042168 57 PLIDLQGFISG-DERATAEAIEHVRGACVN 85 (179)
Q Consensus 57 PvIDl~~l~~~-~~~~~~~~~~~l~~Ac~~ 85 (179)
|+|.+.-+... +.++++++++.|.+++.+
T Consensus 1 P~I~I~l~~Grls~eqk~~L~~~l~~~l~~ 30 (76)
T 1gyx_A 1 PHIDIKCFPRELDEQQKAALAADITDVIIR 30 (76)
T ss_dssp CEEEEEESCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 55555433334 567777888888888765
No 44
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.36 E-value=57 Score=20.08 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=13.0
Q ss_pred ceeecCCCCCCChHHHHHHHHHHHHHhh
Q 042168 57 PLIDLQGFISGDERATAEAIEHVRGACV 84 (179)
Q Consensus 57 PvIDl~~l~~~~~~~~~~~~~~l~~Ac~ 84 (179)
|+|.+.-+...+.+.++++++.|.+++.
T Consensus 2 P~I~I~~~~grs~eqK~~L~~~it~~l~ 29 (72)
T 3mb2_A 2 LLLRITMLEGRSTEQKAELARALSAAAA 29 (72)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 4444433322344455555555555544
No 45
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=22.28 E-value=58 Score=26.33 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHHHHHhhh-ccEEEEEcCCC----CHHHHHHHHHHHHHH
Q 042168 66 SGDERATAEAIEHVRGACVN-HGLFQVINHGV----DASLLKAASEEIDSI 111 (179)
Q Consensus 66 ~~~~~~~~~~~~~l~~Ac~~-~GFF~v~nHGI----~~~li~~~~~~~~~F 111 (179)
.++++...+.++++.+++.. -||+.=.+||| +.+-+..+.++++++
T Consensus 285 ~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~en~~a~v~~v~~~ 335 (338)
T 2eja_A 285 YASEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKSF 335 (338)
T ss_dssp GSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSCHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 35666666666666665543 47877778987 557778888777763
No 46
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A
Probab=21.98 E-value=82 Score=25.37 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcC-CCCHHHHHHHHHHHHHHhCC
Q 042168 53 EHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINH-GVDASLLKAASEEIDSIFKL 114 (179)
Q Consensus 53 ~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~FF~L 114 (179)
..+|+=|||+..++ . +..++|..|+.++|...+.+- .++.+ +..+.+++|=.+
T Consensus 19 Gaei~gvdl~~~L~--d----~~~~~l~~al~~~gvv~fR~q~~l~~~---~~~~fa~~fG~l 72 (301)
T 3r1j_A 19 GARVDGVRLGGDLD--D----ATVEQIRRALLTHKVIFFRHQHHLDDS---RQLEFARLLGTP 72 (301)
T ss_dssp CEEEESCCCSTTCC--H----HHHHHHHHHHHHHSEEEECCCTTCCHH---HHHHHHHHHSCB
T ss_pred cceEeCCCccccCC--H----HHHHHHHHHHHHCCEEEECCCCCCCHH---HHHHHHHhcCCc
Confidence 34677789985432 2 457889999999999999988 78765 334455555433
No 47
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=21.90 E-value=71 Score=24.75 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=28.2
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 58 LIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 58 vIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
+|++..+.+++.+...+.+.++.++|.+++.=.++..+.
T Consensus 91 vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~ 129 (220)
T 1ub3_A 91 VLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGY 129 (220)
T ss_dssp ECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGG
T ss_pred cccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCC
Confidence 366666666777777788888999998876655665553
No 48
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=21.63 E-value=40 Score=26.08 Aligned_cols=34 Identities=9% Similarity=-0.046 Sum_probs=24.9
Q ss_pred CceeecCCCCCCChHHHHHHHHHHHHHhhhc-cEEEEEcCCC
Q 042168 56 EPLIDLQGFISGDERATAEAIEHVRGACVNH-GLFQVINHGV 96 (179)
Q Consensus 56 iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~-GFF~v~nHGI 96 (179)
||++++.... . ++++.|.+++.+. -.+.|.|||+
T Consensus 156 v~~~~y~~~g------~-ela~~i~~~l~~~~~avlL~nHG~ 190 (222)
T 3m4r_A 156 VVVLPYIPPG------F-TLAKEVMNCFKKGIDGIVLRKHGL 190 (222)
T ss_dssp EEEECCCCSS------H-HHHHHHHHHCCTTCSEEEETTTEE
T ss_pred ceecCCcCCc------H-HHHHHHHHHHhcCCCEEEECCCCC
Confidence 7888876532 1 5677888888754 6788999995
No 49
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=21.54 E-value=41 Score=17.38 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhccE
Q 042168 74 EAIEHVRGACVNHGL 88 (179)
Q Consensus 74 ~~~~~l~~Ac~~~GF 88 (179)
++.+.|...|.+ ||
T Consensus 9 ~L~eaL~~vC~~-GF 22 (26)
T 2wfu_B 9 ALMDMLRVACPN-GF 22 (26)
T ss_dssp HHHHHHHHHCSS-CC
T ss_pred HHHHHHHHHHhc-cC
Confidence 577888888987 87
No 50
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=21.46 E-value=76 Score=24.75 Aligned_cols=39 Identities=10% Similarity=-0.044 Sum_probs=28.7
Q ss_pred eeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCC
Q 042168 58 LIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGV 96 (179)
Q Consensus 58 vIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 96 (179)
||++..+.+++.+...+.++++.+||..++.=.++..+.
T Consensus 86 Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~ 124 (226)
T 1vcv_A 86 VAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPY 124 (226)
T ss_dssp ECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG
T ss_pred ecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccC
Confidence 456666667777777788899999998876555666664
No 51
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.34 E-value=69 Score=19.31 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=7.4
Q ss_pred ChHHHHHHHHHHHHHh
Q 042168 68 DERATAEAIEHVRGAC 83 (179)
Q Consensus 68 ~~~~~~~~~~~l~~Ac 83 (179)
+.++++++++.|.+++
T Consensus 15 s~eqK~~l~~~lt~~l 30 (67)
T 3m21_A 15 TNEQKQQLIEGVSDLM 30 (67)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 52
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=21.30 E-value=1.1e+02 Score=23.80 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=29.7
Q ss_pred HHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHhC
Q 042168 78 HVRGACVNHGLFQVINHGVDASLLKAASEEIDSIFK 113 (179)
Q Consensus 78 ~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 113 (179)
+..+.+.+.||+.|.|- ++.+.++++.+.+.+.++
T Consensus 7 e~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~~ 41 (291)
T 2opw_A 7 SQLQKFQQDGFLVLEGF-LSAEECVAMQQRIGEIVA 41 (291)
T ss_dssp HHHHHHHHHSEEEETTS-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEecCC-CCHHHHHHHHHHHHHHHh
Confidence 45678899999998875 899999999999998874
No 53
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=21.09 E-value=1.7e+02 Score=23.85 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=39.1
Q ss_pred CceeecCCCCCCChHHHHHHHHHHHHHhhh-ccEEEEEcCCCC--HHHHHHHHHHHHHHhCCCHHHH
Q 042168 56 EPLIDLQGFISGDERATAEAIEHVRGACVN-HGLFQVINHGVD--ASLLKAASEEIDSIFKLPLERK 119 (179)
Q Consensus 56 iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~-~GFF~v~nHGI~--~~li~~~~~~~~~FF~LP~e~K 119 (179)
+.+||=.... ..++.+.+..+|+. .-++.|--.||. .+.++++.+..++.+.+|.-.|
T Consensus 42 ~~liDPdK~~------~~~~~~~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~~lPvil~ 102 (286)
T 3vk5_A 42 VHIIDPFKVP------VTEAVEKAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAATPLPVVLH 102 (286)
T ss_dssp EEEECTTTSC------HHHHHHHHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred eEEECCCCCC------cHHHHHHHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhCCCCEEEE
Confidence 4456655422 22445556666763 344444488999 9999999999999999986543
No 54
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=20.93 E-value=1.1e+02 Score=24.80 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHHhhh-ccEEEEEcCCC----CHHHHHHHHHHHHHH
Q 042168 67 GDERATAEAIEHVRGACVN-HGLFQVINHGV----DASLLKAASEEIDSI 111 (179)
Q Consensus 67 ~~~~~~~~~~~~l~~Ac~~-~GFF~v~nHGI----~~~li~~~~~~~~~F 111 (179)
++++...+.++++.+.+.. -||+.=.+||| +.+-+..+.++++++
T Consensus 299 ~t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~env~a~v~~v~~~ 348 (354)
T 3cyv_A 299 APPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRL 348 (354)
T ss_dssp SCHHHHHHHHHHHHTTTTTSSCEEBCBSSCCCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4566666666666666543 47877778997 557788888888775
No 55
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=20.28 E-value=1.6e+02 Score=19.82 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=35.6
Q ss_pred CCCCCceeecCCCCCCChHHHHHHHHHHHHHhhhccEEEEEcCCCCHHHHHHHHHHHHHHh-CCCHHHHcc
Q 042168 52 EEHKEPLIDLQGFISGDERATAEAIEHVRGACVNHGLFQVINHGVDASLLKAASEEIDSIF-KLPLERKLG 121 (179)
Q Consensus 52 ~~~~iPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF-~LP~e~K~~ 121 (179)
.....|-|||+.|. ...|+.=++.++. =+..+++.+ .+..++++.| ++|..|+.-
T Consensus 15 ~~~~~p~vdf~kL~----------~~tLrrY~r~y~L--~~~~~~sK~---qLa~aV~kHF~s~~VdE~ev 70 (94)
T 2ld7_A 15 QDIDTPEVDLYQLQ----------VNTLRRYKRHFKL--PTRPGLNKA---QLVEIVGCHFKSIPVNEKDT 70 (94)
T ss_dssp CSSCCCCCCCSSSC----------HHHHHHHHHHTTC--CCCSSCCHH---HHHHHHHHHHTTCCCCHHHH
T ss_pred ccCCCCCcCHHHCC----------HHHHHHHHHHhCC--CCCCCCCHH---HHHHHHHHHHHcCCCCHHHH
Confidence 34568889999874 4557777888877 355667664 4444555555 677666543
Done!