BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042169
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabidopsis thaliana
GN=At4g19900 PE=2 SV=1
Length = 644
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 133/267 (49%), Gaps = 27/267 (10%)
Query: 30 FSKNQCATQFFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRS--LDTRRGYKILK 87
F K +C+ + FM+W SP F R +++L+ + +C+V+ S + LD R
Sbjct: 363 FRKEKCSMRVFMVWNSPGWMFSVRHQRGLESLLSQHRDACVVVFSETVELDFFRN----- 417
Query: 88 PLLDRGFKILTVTPDLPSLVKDTP----AEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAV 143
+ +K+ P+L L++DTP A W K K P H S+L+RLA
Sbjct: 418 SFVKDSYKVAVAMPNLDELLQDTPTHVFASVWFDWRKT-KFYP------THYSELVRLAA 470
Query: 144 LYKYGGVYLDTDFVILKDFKGLRNAIGAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQ 203
LYKYGGVYLD+D ++L LRN IG + DQV + +LNGA M F+K+ P L + L
Sbjct: 471 LYKYGGVYLDSDVIVLGSLSSLRNTIGME--DQVAGE--SLNGAVMSFEKKSPFLLECLN 526
Query: 204 EFTTTFDGSKWGHNGPYLLTRVIQRVGNTPG-----YNLTILGLKAFYPVNWIQINGFYK 258
E+ T+D NG LLTRV +R N L I F+P+N QI ++
Sbjct: 527 EYYLTYDDKCLRCNGADLLTRVAKRFLNGKNRRMNQQELNIRPSSVFFPINSQQITNYFA 586
Query: 259 KPVSEEESKWVEETVLELNKETYGLHL 285
P E+E +E+ ++ E+ H
Sbjct: 587 YPAIEDERSQQDESFKKILNESLTFHF 613
>sp|Q67BJ4|A4GAT_MOUSE Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus
GN=A4galt PE=2 SV=1
Length = 359
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 23/241 (9%)
Query: 57 AVDTLMKANPQSCLVLISRSL--DTRRGYKILKPLLDRGFKILTVTP-DLPSLVKDTPAE 113
+V++ +A+P+S +V++ + L DT + L L F + + P DL L +DTP
Sbjct: 103 SVESAARAHPESQVVVLMKGLPRDTTAQPRNLGISLLSCFPNVWIRPLDLQELFEDTPLA 162
Query: 114 AWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLRNAIGAQG 173
AW + ++ + +P + P+ LSD R+A+L+K+GG+YLDTDF++LK+ L N +G Q
Sbjct: 163 AWYSEARH-RWEPYQLPV---LSDASRIALLWKFGGIYLDTDFIVLKNLLNLTNTLGIQS 218
Query: 174 VDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYLLTRVIQRVGNTP 233
LNGA + F+++H L L +F ++G WGH GP LLTRV ++ +
Sbjct: 219 R-------YVLNGAFLAFERKHEFLALCLHDFVANYNGWIWGHQGPQLLTRVFKKWCSIQ 271
Query: 234 GYN-------LTILGLKAFYPVNWIQINGFYKKPVSEEESKWVEET--VLELNKETYGLH 284
+T L +AFYP+ W +++ EE ++ + T V NK++ G H
Sbjct: 272 SLEKSHACRGVTALPPEAFYPIPWQNWKKYFEDISPEELTQLLNATYAVHVWNKKSQGTH 331
Query: 285 L 285
L
Sbjct: 332 L 332
>sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus
GN=A4galt PE=1 SV=1
Length = 360
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 131/241 (54%), Gaps = 23/241 (9%)
Query: 57 AVDTLMKANPQSCLVLISRSL--DTRRGYKILKPLLDRGFKILTVTP-DLPSLVKDTPAE 113
+V++ +A+P+S +V++ + L DT + L L F + + P DL L +DTP
Sbjct: 104 SVESAARAHPESQVVVLMKGLPRDTTAWPRNLGISLLSCFPNVQIRPLDLQELFEDTPLA 163
Query: 114 AWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLRNAIGAQG 173
AW + ++ + +P P+ LSD R+A+L+K+GG+YLDTDF++LK+ + L N +G Q
Sbjct: 164 AWYLEAQH-RWEPYLLPV---LSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQS 219
Query: 174 VDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYLLTRVIQRVGNTP 233
LNGA + F+++H L +++F ++G WGH GP LLTRV ++ +
Sbjct: 220 R-------YVLNGAFLAFERKHEFLALCIRDFVAHYNGWIWGHQGPQLLTRVFKKWCSIH 272
Query: 234 GY-------NLTILGLKAFYPVNWIQINGFYKKPVSEEESKWVEET--VLELNKETYGLH 284
+T L +AFYP+ W +++ EE ++ + T V NK++ G H
Sbjct: 273 SLKESRACRGVTALPPEAFYPIPWQNWKKYFEDVSPEELAQLLNATYAVHVWNKKSQGTH 332
Query: 285 L 285
L
Sbjct: 333 L 333
>sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens
GN=A4GALT PE=2 SV=1
Length = 353
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 31/242 (12%)
Query: 57 AVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVTP-------DLPSLVKD 109
+V++ + +P+S ++++ + L G L L G +L+ P DL L +D
Sbjct: 97 SVESAARTHPESHVLVLMKGLPG--GNASLPRHL--GISLLSCFPNVQMLPLDLRELFRD 152
Query: 110 TPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLRNAI 169
TP W ++ G+ +P P+ LSD R+A+++K+GG+YLDTDF++LK+ + L N +
Sbjct: 153 TPLADWYAAVQ-GRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVL 208
Query: 170 GAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYLLTRVIQR- 228
G Q LNGA + F++RH + +++F ++G WGH GP LLTRV ++
Sbjct: 209 GTQSR-------YVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKW 261
Query: 229 ------VGNTPGYNLTILGLKAFYPVNWIQINGFYKKPVSEEESKWVEET--VLELNKET 280
+ +T L +AFYP+ W +++ EE + + T V NK++
Sbjct: 262 CSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDINPEELPRLLSATYAVHVWNKKS 321
Query: 281 YG 282
G
Sbjct: 322 QG 323
>sp|Q9N291|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes
GN=A4GALT PE=3 SV=1
Length = 353
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 31/242 (12%)
Query: 57 AVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVTP-------DLPSLVKD 109
+V++ + +P+S ++++ + L G L L G +L+ P DL L +D
Sbjct: 97 SVESAARTHPESHVLVLMKGLPG--GNASLPRHL--GISLLSCFPNVQMLPLDLRELFQD 152
Query: 110 TPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLRNAI 169
TP W ++ G+ +P P+ LSD R+A+++K+GG+YLDTDF++LK+ + L N +
Sbjct: 153 TPLADWYAAVQ-GRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVL 208
Query: 170 GAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYLLTRVIQR- 228
G Q LNGA + F++RH + +++F ++G WGH GP LLTRV ++
Sbjct: 209 GTQSR-------YVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKW 261
Query: 229 ------VGNTPGYNLTILGLKAFYPVNWIQINGFYKKPVSEEESKWVEET--VLELNKET 280
+ +T L +AFYP+ W +++ EE + + T V NK++
Sbjct: 262 CSIRSLAESRSCRGVTTLPPEAFYPIPWQDWKKYFEDINPEELPRLLSATYAVHVWNKKS 321
Query: 281 YG 282
G
Sbjct: 322 QG 323
>sp|Q9N289|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo
pygmaeus GN=A4GALT PE=3 SV=1
Length = 218
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 20/190 (10%)
Query: 102 DLPSLVKDTPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKD 161
DL L +DTP W ++ G+ +P P+ LSD R+A+++K+GG+YLDTDF++LK+
Sbjct: 10 DLRELFRDTPLADWYTAVQ-GRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKN 65
Query: 162 FKGLRNAIGAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYL 221
+ L N +G Q LNGA + F +RH + +++F ++G WGH GP L
Sbjct: 66 LRNLTNVLGTQSR-------YVLNGAFLAFQRRHEFMALCMRDFVDHYNGWIWGHQGPQL 118
Query: 222 LTRVIQR-------VGNTPGYNLTILGLKAFYPVNWIQINGFYKKPVSEEESKWVEET-- 272
LTRV ++ + +T L +AFYP+ W +++ EE + + T
Sbjct: 119 LTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDISPEELPRLLNATYA 178
Query: 273 VLELNKETYG 282
V NK++ G
Sbjct: 179 VHVWNKKSQG 188
>sp|Q9N290|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransferase (Fragment)
OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1
Length = 327
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 37/243 (15%)
Query: 57 AVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVTP-------DLPSLVKD 109
+V++ + +P+S ++++ + L G L L G +L+ P DL L +D
Sbjct: 71 SVESAARTHPESHVLVLMKGLPG--GNASLPRHL--GISLLSCFPNVQMLPLDLRELFRD 126
Query: 110 TPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLRNAI 169
TP W ++ G+ +P P+ LSD R+A+++K+GG+YLDTDF++LK+ + L N +
Sbjct: 127 TPLADWYAAVQ-GRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVL 182
Query: 170 GAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYLLTRVIQR- 228
G Q LNGA + F++ H + + +F ++G WGH GP LLTRV ++
Sbjct: 183 GTQSR-------YVLNGAFLAFERXHEFMALCMXDFVDHYNGWIWGHQGPQLLTRVFKKW 235
Query: 229 ------VGNTPGYNLTILGLKAFYPVNWIQINGFYKKPVSEEESKWVEETVLELNKETYG 282
+ +T L +AFYP+ W +++ EE + L TY
Sbjct: 236 CSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDINPEELPR--------LFSATYA 287
Query: 283 LHL 285
+H+
Sbjct: 288 VHV 290
>sp|Q9UNA3|A4GCT_HUMAN Alpha-1,4-N-acetylglucosaminyltransferase OS=Homo sapiens GN=A4GNT
PE=2 SV=1
Length = 340
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 21/166 (12%)
Query: 102 DLPSLVKDTPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKD 161
D+ L++DTP +W +I N + +N L I SD RLA+++KYGG+Y+DTD + ++
Sbjct: 120 DMKRLLEDTPLFSWYNQI-NASAE--RNWLHIS-SDASRLAIIWKYGGIYMDTDVISIRP 175
Query: 162 FKGLRNAIGAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYL 221
N + AQ + NG F HP L++ ++ F ++ + WG+ GP L
Sbjct: 176 IPE-ENFLAAQASRYSS------NG-IFGFLPHHPFLWECMENFVEHYNSAIWGNQGPEL 227
Query: 222 LTRVI---------QRVGNTPGYNLTILGLKAFYPVNWIQINGFYK 258
+TR++ Q V + N++ L + FYP+++ + +Y+
Sbjct: 228 MTRMLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYE 273
>sp|Q10323|IMT3_SCHPO Inositol phosphoceramide mannosyltransferase 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17G8.11c PE=1 SV=1
Length = 356
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 130 PLSIHLSDLIRLAVLYKYGGVYLDTD 155
P +I +D++R +LYKYGG+YLD D
Sbjct: 117 PYNIERADVVRYFILYKYGGIYLDLD 142
>sp|Q5UQW4|YL373_MIMIV Uncharacterized glycosyltransferase L373 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L373 PE=3 SV=1
Length = 251
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 136 SDLIRLAVLYKYGGVYLDTDFVILK---DFKGLRNAIGAQGVDQVTHKWTTLNGAAMVFD 192
+D R A+L +GG+YLD D V K DF GL A + V + LNG V
Sbjct: 71 ADFARYAILKIHGGIYLDMDMVCRKNLGDFLGLGFFFTAYKLKNVFTNY--LNG---VIG 125
Query: 193 KR--HPILFDFL--QEFTTTFDGSKWGHNGPYLLTR--VIQRVGNTPGYNLTILGLKAFY 246
R HP+ FD++ F D S ++ L R + + N P +++++ K +
Sbjct: 126 SRPNHPV-FDYIFKNMFLRQNDASNVTNSTGTKLFRDSITEYTKNNPTNDISLIDSKYLH 184
Query: 247 PVN 249
P N
Sbjct: 185 PCN 187
>sp|Q31ZP7|PTH_SHIBS Peptidyl-tRNA hydrolase OS=Shigella boydii serotype 4 (strain
Sb227) GN=pth PE=3 SV=1
Length = 194
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 211 GSKWGHNGPYLLTRVIQRVGNTPGYNLTILGLKAFYPVNWIQINGFY--KKPVSEEESKW 268
G+ GHNG L +I ++GN P ++ +G+ +P + ++ GF K PVSE+ K
Sbjct: 109 GAHGGHNG---LKDIISKLGNNPNFHRLRIGIG--HPGDKNKVVGFVLGKPPVSEQ--KL 161
Query: 269 VEETVLELNKET 280
++E + E + T
Sbjct: 162 IDEAIDEAARCT 173
>sp|O58001|RADA_PYRHO DNA repair and recombination protein RadA OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=radA PE=1 SV=1
Length = 529
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 9 PDLEVLKSTNLSRSFHDRVVKFSKNQCATQFFMIWFSPARTFGPRDFLAVDTLMKANPQS 68
P+ VL +T L+ + +V+ + +IW TF P + +P
Sbjct: 317 PNGLVLHNTQLAHTLA-VMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDE 375
Query: 69 CL--VLISRSLDTRRGYKILKPLLDRGFKILTVTPDLPSLVKDTPAEAWLKK-IKNGKID 125
L + ++R+ ++ +++ D+ ++L + L+ D+ + + I G +
Sbjct: 376 VLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALA 435
Query: 126 PGKNPLSIHLSDLIRLAVLYK 146
+ L+ HL+DL RLA LY+
Sbjct: 436 ERQQKLAKHLADLHRLANLYE 456
>sp|Q9SHF3|AGO2_ARATH Protein argonaute 2 OS=Arabidopsis thaliana GN=AGO2 PE=1 SV=1
Length = 1014
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 49 TFGPRDFL-AVDTLMKANPQSCLVLISRSLDTR 80
+F PRD L +D +MK +P C++ + +S TR
Sbjct: 292 SFNPRDVLQGMDVVMKEHPSKCMITVGKSFFTR 324
>sp|Q9UT67|IMT2_SCHPO Inositol phosphoceramide mannosyltransferase 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC4F11.04c PE=3 SV=1
Length = 345
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 130 PLSIHLSDLIRLAVLYKYGGVYLDTD 155
P ++ +D+IR VLY YGG Y+D D
Sbjct: 142 PFNVQRADVIRYFVLYHYGGNYIDLD 167
>sp|P0A373|CR1BA_BACTK Pesticidal crystal protein cry1Ba OS=Bacillus thuringiensis subsp.
kurstaki GN=cry1Ba PE=2 SV=1
Length = 1228
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 107 VKDTPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLR 166
++ T A +W++ + + L++ + DL+ L Y ++T + ++
Sbjct: 237 LRGTNAASWVR------YNQFRRDLTLGVLDLVALFPSYDTRTYPINTSAQLTREV--YT 288
Query: 167 NAIGAQGVDQVTHKWTTLNG----AAMVFDKRHPILFDFLQEFTTTFDGSKWGH 216
+AIGA GV+ + W N A R P L DFL++ T S+W +
Sbjct: 289 DAIGATGVNMASMNWYNNNAPSFSAIEAAAIRSPHLLDFLEQLTIFSASSRWSN 342
>sp|P0A374|CR1BA_BACTE Pesticidal crystal protein cry1Ba OS=Bacillus thuringiensis subsp.
entomocidus GN=cry1Ba PE=3 SV=1
Length = 1228
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 107 VKDTPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLR 166
++ T A +W++ + + L++ + DL+ L Y ++T + ++
Sbjct: 237 LRGTNAASWVR------YNQFRRDLTLGVLDLVALFPSYDTRTYPINTSAQLTREV--YT 288
Query: 167 NAIGAQGVDQVTHKWTTLNG----AAMVFDKRHPILFDFLQEFTTTFDGSKWGH 216
+AIGA GV+ + W N A R P L DFL++ T S+W +
Sbjct: 289 DAIGATGVNMASMNWYNNNAPSFSAIEAAAIRSPHLLDFLEQLTIFSASSRWSN 342
>sp|Q54SP4|DHKD_DICDI Hybrid signal transduction histidine kinase D OS=Dictyostelium
discoideum GN=dhkD PE=2 SV=1
Length = 1546
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 5 RKKLPDLEVLKSTNLSRSFHDRVVKFSKNQCATQFFMIWFSPART-----FGPRDFLAVD 59
K+L +LE+ + N RS ++++ + ++ TQFF RT GP D L D
Sbjct: 183 EKRLGELEIERKNNELRSLYEKIKEL--DELKTQFFANVSHELRTPLALIVGPTDKLLKD 240
Query: 60 TLMKANPQSCLVLISRSLDTRRGYKILKPLLD 91
+ N + L +++R + R KI+ LLD
Sbjct: 241 ENVDINVRKDLEIVAR--NARGLLKIVNNLLD 270
>sp|Q15361|TTF1_HUMAN Transcription termination factor 1 OS=Homo sapiens GN=TTF1 PE=1
SV=3
Length = 905
Score = 32.0 bits (71), Expect = 5.9, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 48 RTFGPRDFLAVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVTPDLPS-- 105
+ P++ VD+ ++ NP+SCL ++ L YK G + V + +
Sbjct: 687 KKMSPQELKEVDSKLQENPESCLSIVREKL-----YK--------GISWVEVEAKVQTRN 733
Query: 106 --LVKDTPAEAWLKKIKNG-KIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDF 162
K E K++ NG +I G N L +S + RL Y DT+ + D+
Sbjct: 734 WMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIERL-----YEINVEDTNEI---DW 785
Query: 163 KGLRNAIGAQGVDQVTHKWTTLNGAAMVF--DKRHPILFDFLQEFT 206
+ L +AIG V K++ L + F K P + D+L E T
Sbjct: 786 EDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETT 831
>sp|P76220|YDJY_ECOLI Uncharacterized protein YdjY OS=Escherichia coli (strain K12)
GN=ydjY PE=4 SV=2
Length = 225
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 27/107 (25%)
Query: 161 DFKGLRNAIGAQGVDQVTHKWTTL---NGAAMVFDKRHPILFDFLQEFTTTFDGSK---- 213
++ GL N+ + VD H T L NG + D RH I+F DGS
Sbjct: 38 EYDGLSNSQPLR-VDANNHTVTMLVQINGRFLTDDTRHGIVFK---------DGSNGHKS 87
Query: 214 --WGHNGPYLLTRVIQRVGNTPGYNLT--------ILGLKAFYPVNW 250
G+ P ++ G TPG N+T + G K VNW
Sbjct: 88 LFMGYATPKAFYEALKEAGGTPGENMTMDNKETTHVTGSKLDISVNW 134
>sp|B0TS89|THIG_SHEHH Thiazole synthase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=thiG PE=3 SV=1
Length = 255
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 38 QFFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRSLDTRRGY-KILKPLLDRGFKI 96
QF F+ F + + T ++A+ + L + LD + G ILKPLLDRG K+
Sbjct: 8 QFESRLFTGTGKFAASEIML--TAIQASQSQLVTLAIKRLDLKTGSDNILKPLLDRGVKL 65
Query: 97 L 97
L
Sbjct: 66 L 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,294,371
Number of Sequences: 539616
Number of extensions: 5047602
Number of successful extensions: 11040
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 11007
Number of HSP's gapped (non-prelim): 25
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)