Query 042169
Match_columns 286
No_of_seqs 247 out of 1147
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1928 Alpha-1,4-N-acetylgluc 100.0 1.3E-57 2.8E-62 416.3 19.2 279 5-286 97-375 (409)
2 PF05704 Caps_synth: Capsular 99.9 4.4E-24 9.6E-29 194.1 13.9 157 20-209 24-190 (276)
3 PF04488 Gly_transf_sug: Glyco 99.8 2.8E-21 6.1E-26 150.9 7.5 96 51-166 1-97 (103)
4 PF04572 Gb3_synth: Alpha 1,4- 99.8 1.8E-20 4E-25 153.3 7.8 90 189-286 1-99 (135)
5 COG3774 OCH1 Mannosyltransfera 99.8 1.5E-18 3.3E-23 160.4 8.0 160 34-232 81-246 (347)
6 PF12919 TcdA_TcdB: TcdA/TcdB 98.9 3.5E-09 7.6E-14 103.2 8.7 38 37-76 2-39 (514)
7 PRK15382 non-LEE encoded effec 95.3 0.041 8.9E-07 48.9 5.7 77 136-214 182-280 (326)
8 PRK15383 type III secretion sy 94.9 0.087 1.9E-06 46.9 6.8 78 135-214 189-288 (335)
9 PRK15384 type III secretion sy 94.9 0.057 1.2E-06 48.1 5.7 91 135-231 186-298 (336)
10 cd06914 GT8_GNT1 GNT1 is a fun 93.9 0.18 3.9E-06 46.2 6.8 103 138-245 81-189 (278)
11 cd02537 GT8_Glycogenin Glycoge 93.0 0.15 3.2E-06 45.4 4.8 57 149-208 93-152 (240)
12 PRK15171 lipopolysaccharide 1, 93.0 0.38 8.2E-06 45.2 7.5 111 37-167 24-142 (334)
13 cd04194 GT8_A4GalT_like A4GalT 90.6 0.72 1.6E-05 40.9 6.3 136 55-208 16-180 (248)
14 cd06431 GT8_LARGE_C LARGE cata 86.5 2.5 5.5E-05 38.7 7.1 30 138-167 85-119 (280)
15 PF01501 Glyco_transf_8: Glyco 85.3 0.94 2E-05 39.3 3.5 72 135-206 84-180 (250)
16 cd06429 GT8_like_1 GT8_like_1 83.7 6.8 0.00015 35.4 8.4 70 134-206 98-176 (257)
17 PF03407 Nucleotid_trans: Nucl 82.9 7.9 0.00017 33.3 8.3 112 133-246 53-173 (212)
18 PLN00176 galactinol synthase 82.8 2.2 4.7E-05 40.2 5.0 149 38-207 23-207 (333)
19 COG1442 RfaJ Lipopolysaccharid 77.4 12 0.00026 35.1 8.0 105 43-166 7-118 (325)
20 PLN03181 glycosyltransferase; 66.3 65 0.0014 31.3 10.2 72 134-207 184-268 (453)
21 PLN02718 Probable galacturonos 65.1 16 0.00035 37.0 6.2 121 36-167 311-439 (603)
22 cd06430 GT8_like_2 GT8_like_2 63.6 4 8.6E-05 37.9 1.5 30 138-167 85-118 (304)
23 cd06432 GT8_HUGT1_C_like The C 63.4 6 0.00013 35.4 2.7 109 38-167 2-117 (248)
24 cd00505 Glyco_transf_8 Members 59.8 5.1 0.00011 35.5 1.5 169 54-244 16-211 (246)
25 KOG1467 Translation initiation 52.3 25 0.00055 34.7 4.9 99 1-107 307-424 (556)
26 PF07801 DUF1647: Protein of u 46.6 33 0.00072 28.2 4.2 62 39-106 63-124 (142)
27 PLN02659 Probable galacturonos 45.3 13 0.00028 37.1 1.8 36 132-167 326-365 (534)
28 PLN02870 Probable galacturonos 44.0 14 0.0003 36.8 1.8 36 132-167 325-364 (533)
29 cd01840 SGNH_hydrolase_yrhL_li 43.2 1.6E+02 0.0034 23.6 7.8 103 4-111 17-124 (150)
30 PLN02867 Probable galacturonos 42.4 15 0.00032 36.7 1.7 36 132-167 327-366 (535)
31 PLN02829 Probable galacturonos 41.7 16 0.00035 37.1 1.9 36 132-167 439-478 (639)
32 PLN02523 galacturonosyltransfe 38.8 19 0.00041 36.1 1.8 35 133-167 360-398 (559)
33 PLN02910 polygalacturonate 4-a 38.2 19 0.00042 36.6 1.8 36 132-167 457-496 (657)
34 PF10537 WAC_Acf1_DNA_bd: ATP- 37.5 77 0.0017 24.5 4.7 38 21-63 17-54 (102)
35 PLN02769 Probable galacturonos 33.6 25 0.00053 35.9 1.7 35 133-167 435-473 (629)
36 PF13453 zf-TFIIB: Transcripti 31.2 16 0.00034 23.1 -0.1 10 146-155 24-33 (41)
37 PLN02742 Probable galacturonos 30.3 31 0.00068 34.4 1.8 36 132-167 335-374 (534)
38 PF10632 He_PIG_assoc: He_PIG 29.6 15 0.00032 21.7 -0.3 12 188-199 8-19 (29)
39 PF05637 Glyco_transf_34: gala 28.3 32 0.00069 30.6 1.4 114 135-250 63-213 (239)
40 PLN03182 xyloglucan 6-xylosylt 27.7 1.6E+02 0.0034 28.7 5.9 73 134-207 183-267 (429)
41 PF07958 DUF1688: Protein of u 27.2 36 0.00077 33.0 1.6 21 145-165 313-333 (420)
42 PF12919 TcdA_TcdB: TcdA/TcdB 26.4 66 0.0014 32.2 3.3 44 107-158 187-232 (514)
43 KOG1928 Alpha-1,4-N-acetylgluc 23.5 36 0.00078 32.6 0.8 25 235-259 335-359 (409)
44 PF00535 Glycos_transf_2: Glyc 21.3 1.1E+02 0.0024 23.6 3.2 45 53-99 13-58 (169)
45 cd00354 FBPase Fructose-1,6-bi 20.4 76 0.0016 29.6 2.3 41 110-155 205-250 (315)
No 1
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-57 Score=416.27 Aligned_cols=279 Identities=51% Similarity=0.977 Sum_probs=259.1
Q ss_pred hcccCCceeeccCCCchhhHHHHhhhccCCcceEEEEEEcCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCccCCccccc
Q 042169 5 RKKLPDLEVLKSTNLSRSFHDRVVKFSKNQCATQFFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRSLDTRRGYK 84 (286)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~W~s~~~~l~~r~~caIeS~~~~~P~~~V~l~~~~~~~~~~~~ 84 (286)
+..++.+++++|...+++|+.+...++...|+.+|+|.|+|+...++.|+.|||||++++||+++|++++++.++..|+.
T Consensus 97 ~~~l~e~~~~~s~~~~~sf~~~~~~~~~~~c~~~~fm~w~S~~~~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s 176 (409)
T KOG1928|consen 97 KIELQELENLSSELKSPSFQSRVNSFFRKECSVRFFMTWISPAESFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYS 176 (409)
T ss_pred cchhhheeeccccccCcccCCCcchhhccCCceeEEEEecccccCCChhhhhhhHHHHhhCCCceEEEEEccccCCCCcc
Confidence 35788999999999999999999999888899999999999999999999999999999999999999999988888899
Q ss_pred cchhhhhcCccEEEECCChhhhhccCchHHHHHhhhcCccCCCCCCchhhhHhHHHHHHHHHhCcEEEeCCeeeeccchh
Q 042169 85 ILKPLLDRGFKILTVTPDLPSLVKDTPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKG 164 (286)
Q Consensus 85 ~~~~l~~~~~~v~~~~~d~~~~~~~tP~~~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lL~~~GGiYlD~Dv~~~rpl~~ 164 (286)
+.++|.+++++|..+.+|++.++++||.+.|.+.+++|+.+++++++..+.||+.|+++||||||||||+||+++|++..
T Consensus 177 ~~kp~~~~~lsv~~v~~~lp~llk~t~~e~~l~~~k~g~~~~~~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~ 256 (409)
T KOG1928|consen 177 ILKPFLDSGLSVIAVTPDLPFLLKDTPGETWLERWKDGRLDPGKIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSN 256 (409)
T ss_pred ccccHhHhhhhhcccccCchhhHhhCccccHHHHHHhcccCCCcccchhhHHHHHHHHHHHHhCCEEeeccEEEeccccc
Confidence 99999999999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred hhhhhccccccccCCCcccccceEEEeeCCCHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHcCCCCCcEEEecCCc
Q 042169 165 LRNAIGAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYLLTRVIQRVGNTPGYNLTILGLKA 244 (286)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~l~n~~~~~~~~hp~l~~~l~~~~~~~~~~~~~~~GP~~lt~~~~~~~~~~~~~~~i~p~~~ 244 (286)
+.|.+|.. +....|..++||+|++.++|||+.+||+++...|+|..||.+||.++|||+++.|+..+..++|.|+..
T Consensus 257 l~N~ig~~---~~~~~~~~lnnavl~F~k~Hpfl~~cl~eF~~tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~ 333 (409)
T KOG1928|consen 257 LRNVIGVD---PATQAWTRLNNAVLIFDKNHPFLLECLREFALTYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSA 333 (409)
T ss_pred cccccccc---chhhHHHhhcCceeecCCCCHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHhCCCCccceecCccc
Confidence 99988832 223467899999999999999999999999999999999999999999999999998877888999999
Q ss_pred cccCCccchhccccCCCchhhhHHHHHHHhhhcCceEEEEeC
Q 042169 245 FYPVNWIQINGFYKKPVSEEESKWVEETVLELNKETYGLHLL 286 (286)
Q Consensus 245 F~P~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~sy~iHlw 286 (286)
|||++|.++..||.-|..+-++.|..+++..+.++||+||+|
T Consensus 334 f~~vn~~~i~~fy~iP~~ew~~~~~~~~~~~~~k~Sy~vHlW 375 (409)
T KOG1928|consen 334 FYPVNWLEIQAFYAIPWTEWDRKFVDEETLKMLKNSYAVHLW 375 (409)
T ss_pred cCceeeeccccccccchhHhhhhhhHHHHHHHhccCeEEEee
Confidence 999999999999988877767777677788889999999999
No 2
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=99.91 E-value=4.4e-24 Score=194.12 Aligned_cols=157 Identities=20% Similarity=0.363 Sum_probs=112.0
Q ss_pred chhhHHHHhhhcc-----CCcceEEEEEEcCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCccCCccccccchhhhhcCc
Q 042169 20 SRSFHDRVVKFSK-----NQCATQFFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGF 94 (286)
Q Consensus 20 ~~~f~~~~~~~~~-----~~~~~~i~~~W~s~~~~l~~r~~caIeS~~~~~P~~~V~l~~~~~~~~~~~~~~~~l~~~~~ 94 (286)
.++|.+.+..+.. ...+..||+||.||.+++|+.++.||+|+.+++|+++|+++++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~~~~Vi~lt~~------------------ 85 (276)
T PF05704_consen 24 KKKYKDFISKYQYKKKKPETNEKIIWVCWWQGEENAPEIVKKCINSWRKNAPDYEVILLTED------------------ 85 (276)
T ss_pred HHHHHHHHHHhhhcccCcCCCCCcEEEEECCCccccCHHHHHHHHHHHHHCCCCeEEEEChH------------------
Confidence 4455555554422 23455699999999999999999999999999999999999864
Q ss_pred cEEEECCChhhhhccCchHHHHHhhhcCccCCCCCCchhhhHhHHHHHHHHHhCcEEEeCCeeeeccchhhhh---hhcc
Q 042169 95 KILTVTPDLPSLVKDTPAEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLRN---AIGA 171 (286)
Q Consensus 95 ~v~~~~~d~~~~~~~tP~~~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lL~~~GGiYlD~Dv~~~rpl~~l~~---~~~~ 171 (286)
|+.+|+ +.|.. ..+++.+|.++ .+|+||++|+.+|++|||+|+|+||+|++|++.... ++.+
T Consensus 86 -------Ni~~Yv-~~P~~-i~~k~~~g~i~------~a~~SDilR~~LL~~yGGvWiDatv~~t~~l~~~~~~~~ff~~ 150 (276)
T PF05704_consen 86 -------NIKDYV-DIPDF-ILEKYEKGKIS------PAHFSDILRLALLYKYGGVWIDATVYLTKPLDDEIFDSDFFSF 150 (276)
T ss_pred -------HHHHHc-CCchh-HHHHHHcCCCc------hhHHHHHHHHHHHHHcCcEEeCCceEECCchhHHHhcCCeeEE
Confidence 122332 22322 13445566553 589999999999999999999999999999998642 3444
Q ss_pred cccccc--CCCcccccceEEEeeCCCHHHHHHHHHHHHhc
Q 042169 172 QGVDQV--THKWTTLNGAAMVFDKRHPILFDFLQEFTTTF 209 (286)
Q Consensus 172 ~~~~~~--~~~~~~l~n~~~~~~~~hp~l~~~l~~~~~~~ 209 (286)
...... ........|.+|++++|||+++.+.+.+.+-.
T Consensus 151 ~~~~~~~~~~~~~~w~~~fi~a~~~n~~~~~~~~~~~~yw 190 (276)
T PF05704_consen 151 SRPDKDYNPISISSWTNFFIAAKKGNPFIKFWRDLLLEYW 190 (276)
T ss_pred eccCcCcccchHHHhHhhheeECCCCHHHHHHHHHHHHHH
Confidence 221111 01112334559999999999999999888653
No 3
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=99.84 E-value=2.8e-21 Score=150.88 Aligned_cols=96 Identities=33% Similarity=0.583 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHCCCCeEEEEeCccCCccccccchhhhhcCccEEEECCChhhhhccCchHHHHHhhhcCccCCCCCC
Q 042169 51 GPRDFLAVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVTPDLPSLVKDTPAEAWLKKIKNGKIDPGKNP 130 (286)
Q Consensus 51 ~~r~~caIeS~~~~~P~~~V~l~~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~~~~tP~~~w~~~~~~g~~~~~~~~ 130 (286)
|+++.|+||||+++||++++++|+++.. |+.+..+|+..++.++| |+.+..+ +++.+..+
T Consensus 1 P~~~~~~i~s~~~~nP~~~~~~~~d~~~----------------~~~~~~~~~~~l~~~~~---~~~~~~~-~~~~~~~~ 60 (103)
T PF04488_consen 1 PERFQCSIESWARHNPDYEYILWTDESD----------------NVRVKRIDIEFLFEKTP---WFLELYN-KWEPGRYP 60 (103)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCc----------------chhhhHHHHHHHHhCCh---HHHHHHh-hhhccccc
Confidence 6789999999999999999999998642 34444567888887777 4444332 22223344
Q ss_pred chhhhHhHHHHHHHHHhCcEEEeCCeeeeccc-hhhh
Q 042169 131 LSIHLSDLIRLAVLYKYGGVYLDTDFVILKDF-KGLR 166 (286)
Q Consensus 131 ~~a~~SD~~R~~lL~~~GGiYlD~Dv~~~rpl-~~l~ 166 (286)
..+++||++|+++||++||||+|+|++|+||+ +.++
T Consensus 61 ~~~~~sD~~R~~~L~~~GGiY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGGIYLDLDVICLRPLDDPWL 97 (103)
T ss_pred chHHHHHHHHHHHHHHcCcEEEeCccccCcchhhhhh
Confidence 46899999999999999999999999999999 7665
No 4
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=99.82 E-value=1.8e-20 Score=153.28 Aligned_cols=90 Identities=43% Similarity=0.907 Sum_probs=80.0
Q ss_pred EEeeCCCHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHcCCC---------CCcEEEecCCccccCCccchhccccC
Q 042169 189 MVFDKRHPILFDFLQEFTTTFDGSKWGHNGPYLLTRVIQRVGNTP---------GYNLTILGLKAFYPVNWIQINGFYKK 259 (286)
Q Consensus 189 ~~~~~~hp~l~~~l~~~~~~~~~~~~~~~GP~~lt~~~~~~~~~~---------~~~~~i~p~~~F~P~~~~~~~~~f~~ 259 (286)
|++.++|||++++|+++.++|+++.|+.+||.++||+++++|+.. +.+++|+|+++|||++|.+|++||++
T Consensus 1 m~F~~~H~~~~~~l~df~~~Y~~~~w~~nGP~lltRVl~~~C~~~~~~~~~~~~C~~~~vlp~~~FYPI~~~~~~~~F~~ 80 (135)
T PF04572_consen 1 MAFDKGHPFLWECLEDFVKNYDGNKWGHNGPDLLTRVLKKFCNTENFKDMEDNRCRGFSVLPPEAFYPIPYQDWKRFFEP 80 (135)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcchhcccCcHHHHHHHHHHhcCCCccccccccCCCeEEcCccceeccChhHhHHHhcC
Confidence 578999999999999999999999999999999999999998753 24799999999999999999999999
Q ss_pred CCchhhhHHHHHHHhhhcCceEEEEeC
Q 042169 260 PVSEEESKWVEETVLELNKETYGLHLL 286 (286)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~sy~iHlw 286 (286)
+...+..+| .++||+||+|
T Consensus 81 ~~~~~~~~~--------~~~Sy~vHlW 99 (135)
T PF04572_consen 81 PSTEEVMEW--------LKNSYAVHLW 99 (135)
T ss_pred CcchHHHHH--------hhCceEEEec
Confidence 877643333 3499999999
No 5
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.5e-18 Score=160.35 Aligned_cols=160 Identities=20% Similarity=0.327 Sum_probs=118.5
Q ss_pred CcceEEEEEEcCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCccCCccccccchhhhhcCccEEEECCChhhhhccCchH
Q 042169 34 QCATQFFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVTPDLPSLVKDTPAE 113 (286)
Q Consensus 34 ~~~~~i~~~W~s~~~~l~~r~~caIeS~~~~~P~~~V~l~~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~~~~tP~~ 113 (286)
.....||++|.++. +|+...-+.++|..+|||++.++|++...+ ++.+. +. |
T Consensus 81 ~IPk~IwQTw~~~~--~P~~~~~~~~~~~~~~PdY~yi~~tD~~~~--------~~v~h---------~~-------~-- 132 (347)
T COG3774 81 AIPKIIWQTWSNEK--FPEYVNKLFNRWRSLHPDYRYILWTDEMRE--------PLVEH---------DY-------P-- 132 (347)
T ss_pred hHHHHHHHHhcCCC--CCHHHHHHHHHHHhcCCCeEEEecchhhhh--------HHHhh---------cc-------H--
Confidence 34667999998877 788888889999999999999999875322 22211 11 1
Q ss_pred HHHHhhhcCccCCCCCCchhhhHhHHHHHHHHHhCcEEEeCCeeeeccchhhh-hhhccccccccCCCcccccceEEEee
Q 042169 114 AWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLR-NAIGAQGVDQVTHKWTTLNGAAMVFD 192 (286)
Q Consensus 114 ~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lL~~~GGiYlD~Dv~~~rpl~~l~-~~~~~~~~~~~~~~~~~l~n~~~~~~ 192 (286)
|+-+.. +..|+++.++|++||.+|++|||||+|+|.-|.+++++++ +.-.+-... ....++|.+|++.
T Consensus 133 -~~~~ay------~~yp~~~~raD~~RYfvL~~~GGIY~DiD~~~~~~id~~l~~~~~~l~~~----~~~~v~n~~m~s~ 201 (347)
T COG3774 133 -WFLDAY------RRYPYGALRADFWRYFVLYHYGGIYLDIDTGLVKPIDPLLDDAEAWLRRT----IPLGVGNGVMGSA 201 (347)
T ss_pred -HHHHHH------HccCcchhhhhhHhheeeeccCcEEEeCCcccccCCcccccchHHHhhhc----CCCcccchhhccC
Confidence 222211 1234578999999999999999999999999999999987 321111110 1256889999999
Q ss_pred CCCHHHHHHHHHHHHhc--C---CCcccccccHHHHHHHHHHcCC
Q 042169 193 KRHPILFDFLQEFTTTF--D---GSKWGHNGPYLLTRVIQRVGNT 232 (286)
Q Consensus 193 ~~hp~l~~~l~~~~~~~--~---~~~~~~~GP~~lt~~~~~~~~~ 232 (286)
|+||+++.+++.+.... . -..+..|||.+++.+..++...
T Consensus 202 p~hp~~~~~i~~~~~~~~~~~p~~ti~~stGp~iL~~i~~~~~~~ 246 (347)
T COG3774 202 PGHPFLKKMIERLPYNIIWKFPYWTIQASTGPLILSEIHSAYTVQ 246 (347)
T ss_pred CCCchHHHHHHHhhhccccCCCceeeecCCCChhHHHHHHHhhcc
Confidence 99999999999998221 1 1345689999999999998653
No 6
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=98.92 E-value=3.5e-09 Score=103.25 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=29.5
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCc
Q 042169 37 TQFFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRS 76 (286)
Q Consensus 37 ~~i~~~W~s~~~~l~~r~~caIeS~~~~~P~~~V~l~~~~ 76 (286)
..|||+|.+|. +|..|.-.|.-|+++|||+++.+|.++
T Consensus 2 K~iH~iWigG~--~~~~~~~Yik~w~~~n~dy~~~lW~D~ 39 (514)
T PF12919_consen 2 KNIHFIWIGGA--PPDIQRDYIKTWKDTNPDYTINLWYDS 39 (514)
T ss_dssp SEEEEE--SS-----HHHHHHHHHHHHHTTTSEEEEEE-T
T ss_pred CeEEEEEeCCC--CchhHHHHHHHHHHHCCCCEEEEEECc
Confidence 57999999988 589999999999999999999999753
No 7
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=95.27 E-value=0.041 Score=48.92 Aligned_cols=77 Identities=26% Similarity=0.375 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHhC-------------------cEEEeCCeeeeccchhhhh--hhccccccccCCCcccccceEEEe-eC
Q 042169 136 SDLIRLAVLYKYG-------------------GVYLDTDFVILKDFKGLRN--AIGAQGVDQVTHKWTTLNGAAMVF-DK 193 (286)
Q Consensus 136 SD~~R~~lL~~~G-------------------GiYlD~Dv~~~rpl~~l~~--~~~~~~~~~~~~~~~~l~n~~~~~-~~ 193 (286)
=|++|-+.|.|-| -||+|+|++++.-|.-+.. -++..-... .+...+.||+++. +.
T Consensus 182 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~--~~~~slENg~I~VnRs 259 (326)
T PRK15382 182 FDFFRNLALLKAGELFTETGKTGCHNISPCEGCIYLDADMIITDKLGVLYAPDGIAVHVDCN--DDSKSLENGAIVVNRS 259 (326)
T ss_pred hHHHHHHHHHhcccceeecCCCCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEec--CCccccccceEEEccC
Confidence 4999999888754 3899999999988876532 222111110 1124577887765 56
Q ss_pred CCHHHHHHHHHHHHhcCCCcc
Q 042169 194 RHPILFDFLQEFTTTFDGSKW 214 (286)
Q Consensus 194 ~hp~l~~~l~~~~~~~~~~~~ 214 (286)
+||.+.+-++.+....++..+
T Consensus 260 nHPALl~GL~iMhsK~da~PY 280 (326)
T PRK15382 260 NHPALLAGLDIMKSKVDAHPY 280 (326)
T ss_pred CCHHHHhhhHHhhcCCCCCcc
Confidence 999999999999988766543
No 8
>PRK15383 type III secretion system protein; Provisional
Probab=94.94 E-value=0.087 Score=46.91 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=53.5
Q ss_pred hHhHHHHHHHHHhCc-------------------EEEeCCeeeeccchhhhh--hhccccccccCCCcccccceEEEe-e
Q 042169 135 LSDLIRLAVLYKYGG-------------------VYLDTDFVILKDFKGLRN--AIGAQGVDQVTHKWTTLNGAAMVF-D 192 (286)
Q Consensus 135 ~SD~~R~~lL~~~GG-------------------iYlD~Dv~~~rpl~~l~~--~~~~~~~~~~~~~~~~l~n~~~~~-~ 192 (286)
-=|++|-+.|.|-|+ ||+|+|++++.-|.-+.. -++..-... .+...+.||+++. +
T Consensus 189 wFDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~--~~~~slENg~I~VnR 266 (335)
T PRK15383 189 WFDFYRNLFLLKGSDAFLEAGKHGCHHLQPGGGCIYLDADMLLTDKLGTLYLPDGIAIHVSRK--DNHVSLENGIIAVNR 266 (335)
T ss_pred ehHHHHHHHHHhcccceeeccccCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEec--CCceecccceEEEcc
Confidence 349999998887543 899999999988776532 222111110 1124577887765 5
Q ss_pred CCCHHHHHHHHHHHHhcCCCcc
Q 042169 193 KRHPILFDFLQEFTTTFDGSKW 214 (286)
Q Consensus 193 ~~hp~l~~~l~~~~~~~~~~~~ 214 (286)
.+||.+.+-++.+....++..+
T Consensus 267 snHPALl~GL~iMhsK~da~PY 288 (335)
T PRK15383 267 SEHPALIKGLEIMHSKPYGDPY 288 (335)
T ss_pred CCCHHHHhhhHHhhcCCCCCcc
Confidence 6999999999999988766543
No 9
>PRK15384 type III secretion system protein; Provisional
Probab=94.93 E-value=0.057 Score=48.06 Aligned_cols=91 Identities=22% Similarity=0.336 Sum_probs=58.8
Q ss_pred hHhHHHHHHHHHhCc-------------------EEEeCCeeeeccchhhhh--hhccccccccCCCcccccceEEEe-e
Q 042169 135 LSDLIRLAVLYKYGG-------------------VYLDTDFVILKDFKGLRN--AIGAQGVDQVTHKWTTLNGAAMVF-D 192 (286)
Q Consensus 135 ~SD~~R~~lL~~~GG-------------------iYlD~Dv~~~rpl~~l~~--~~~~~~~~~~~~~~~~l~n~~~~~-~ 192 (286)
-=|++|-+.|.+-|+ ||+|+|++++.-+.-+.. -++..-... .+...+.||+++. +
T Consensus 186 wFDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLDaDMilT~KLG~ly~PDGIavhV~r~--~~~~slENg~I~VnR 263 (336)
T PRK15384 186 WFDFYRNMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITEKLGGIYIPDGIAVHVERI--DGRASMENGIIAVDR 263 (336)
T ss_pred hhHHHHHHHHHhccceeeecCCCCCcccCCCCceEEeeccceeecccccEEcCCceEEEEEec--CCceecccceEEEcc
Confidence 349999998887543 799999999988776532 222111110 1124577887765 5
Q ss_pred CCCHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHcC
Q 042169 193 KRHPILFDFLQEFTTTFDGSKWGHNGPYLLTRVIQRVGN 231 (286)
Q Consensus 193 ~~hp~l~~~l~~~~~~~~~~~~~~~GP~~lt~~~~~~~~ 231 (286)
.+||.+.+-++.+....++..+. .-+..-++++.+
T Consensus 264 snHPALl~GL~iMhsK~da~PY~----Dgl~kGik~~Fn 298 (336)
T PRK15384 264 NNHPALLAGLEIMHTKFDADPYS----DGVCNGIRKHFN 298 (336)
T ss_pred CCCHHHHhhHHHhhcCCCCCcch----hhhhhhHHhhcC
Confidence 69999999999999887665432 123344555543
No 10
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=93.90 E-value=0.18 Score=46.18 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=60.8
Q ss_pred HHHHHHHH--HhC-cEEEeCCeeeeccchhhhhhh-ccccccccCCCcccccceEEEeeCCCHHHHHHHHHHHHhcCCCc
Q 042169 138 LIRLAVLY--KYG-GVYLDTDFVILKDFKGLRNAI-GAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTTFDGSK 213 (286)
Q Consensus 138 ~~R~~lL~--~~G-GiYlD~Dv~~~rpl~~l~~~~-~~~~~~~~~~~~~~l~n~~~~~~~~hp~l~~~l~~~~~~~~~~~ 213 (286)
+.|+.+.. +|- =+|+|+|++|+++++.+.+.- ......+. .+-.+|+|+|...|..-...++++.+.+......
T Consensus 81 ~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~--~~~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~ 158 (278)
T cd06914 81 LTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPR--AYWKFASHLMVIKPSKEAFKELMTEILPAYLNKK 158 (278)
T ss_pred HHHHHhccccceeeEEEecCChhhhcChHHHhcCCcccceeeec--CcceecceeEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 66665543 232 589999999999999976421 10000011 1126899999999998888888888776432110
Q ss_pred cccccc--HHHHHHHHHHcCCCCCcEEEecCCcc
Q 042169 214 WGHNGP--YLLTRVIQRVGNTPGYNLTILGLKAF 245 (286)
Q Consensus 214 ~~~~GP--~~lt~~~~~~~~~~~~~~~i~p~~~F 245 (286)
.++ .++..++....+...-.+.++|...+
T Consensus 159 ---~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y 189 (278)
T cd06914 159 ---NEYDMDLINEEFYNSKQLFKPSVLVLPHRQY 189 (278)
T ss_pred ---CCCChHHHHHHHhCCccccCcceEEcCcccc
Confidence 112 45555554432111124778887644
No 11
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=93.03 E-value=0.15 Score=45.40 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=41.5
Q ss_pred cEEEeCCeeeeccchhhhhh---hccccccccCCCcccccceEEEeeCCCHHHHHHHHHHHHh
Q 042169 149 GVYLDTDFVILKDFKGLRNA---IGAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTTT 208 (286)
Q Consensus 149 GiYlD~Dv~~~rpl~~l~~~---~~~~~~~~~~~~~~~l~n~~~~~~~~hp~l~~~l~~~~~~ 208 (286)
=+|+|+|++++++++++.+. ++.... . .....+|.|+|...++......+++.+.+.
T Consensus 93 vlylD~D~~v~~~i~~Lf~~~~~~~a~~d-~--~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~ 152 (240)
T cd02537 93 VVFLDADTLVLRNIDELFDLPGEFAAAPD-C--GWPDLFNSGVFVLKPSEETFNDLLDALQDT 152 (240)
T ss_pred EEEEeCCeeEccCHHHHhCCCCceeeecc-c--CccccccceEEEEcCCHHHHHHHHHHHhcc
Confidence 38999999999999998653 222111 1 001468999999999988888888887754
No 12
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=92.96 E-value=0.38 Score=45.19 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=66.3
Q ss_pred eEEEEEEcCCCCCCCHHHHHHHHHHHHHCCCC--eEEEEeCccCCccccccchhhhhc-CccEEEECCChhhhhccCchH
Q 042169 37 TQFFMIWFSPARTFGPRDFLAVDTLMKANPQS--CLVLISRSLDTRRGYKILKPLLDR-GFKILTVTPDLPSLVKDTPAE 113 (286)
Q Consensus 37 ~~i~~~W~s~~~~l~~r~~caIeS~~~~~P~~--~V~l~~~~~~~~~~~~~~~~l~~~-~~~v~~~~~d~~~~~~~tP~~ 113 (286)
..+|.+-..+..-++. -.-+|.|...+||+. ++.|+++.... ..-..+..+.+. +.+|.+..+|...+ .+.|.
T Consensus 24 ~~i~Iv~~~D~ny~~~-~~vsi~Sil~nn~~~~~~f~Il~~~is~-e~~~~l~~l~~~~~~~i~~~~id~~~~-~~~~~- 99 (334)
T PRK15171 24 NSLDIAYGIDKNFLFG-CGVSIASVLLNNPDKSLVFHVFTDYISD-ADKQRFSALAKQYNTRINIYLINCERL-KSLPS- 99 (334)
T ss_pred CceeEEEECcHhhHHH-HHHHHHHHHHhCCCCCEEEEEEeCCCCH-HHHHHHHHHHHhcCCeEEEEEeCHHHH-hCCcc-
Confidence 5688888877755433 455699999999985 56777765421 111233344443 34566655554332 22221
Q ss_pred HHHHhhhcCccCCCCCCchhhhHhHHHHHH---HH-HhC-cEEEeCCeeeeccchhhhh
Q 042169 114 AWLKKIKNGKIDPGKNPLSIHLSDLIRLAV---LY-KYG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 114 ~w~~~~~~g~~~~~~~~~~a~~SD~~R~~l---L~-~~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
.. ....+=++|+.+ |- .+. =+|||+|++|.+++++|.+
T Consensus 100 -------~~---------~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~ 142 (334)
T PRK15171 100 -------TK---------NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELID 142 (334)
T ss_pred -------cC---------cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHh
Confidence 00 124566778844 32 233 4899999999999998753
No 13
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=90.61 E-value=0.72 Score=40.88 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=74.6
Q ss_pred HHHHHHHHHHCC--CCeEEEEeCccCCccccccchhhhhc-CccEEEECCChhhhhccCchHHHHHhhhcCccCCCCCCc
Q 042169 55 FLAVDTLMKANP--QSCLVLISRSLDTRRGYKILKPLLDR-GFKILTVTPDLPSLVKDTPAEAWLKKIKNGKIDPGKNPL 131 (286)
Q Consensus 55 ~caIeS~~~~~P--~~~V~l~~~~~~~~~~~~~~~~l~~~-~~~v~~~~~d~~~~~~~tP~~~w~~~~~~g~~~~~~~~~ 131 (286)
..++.|..++++ ...+.+++++... .....++.+... +.+|.++.++..... ..|. ..+ .
T Consensus 16 ~~~l~Sl~~~~~~~~~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~~~i~~~~~~-~~~~-------~~~-----~--- 78 (248)
T cd04194 16 AVTIKSILANNSKRDYDFYILNDDISE-ENKKKLKELLKKYNSSIEFIKIDNDDFK-FFPA-------TTD-----H--- 78 (248)
T ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCH-HHHHHHHHHHHhcCCeEEEEEcCHHHHh-cCCc-------ccc-----c---
Confidence 445899999999 5677777765321 111223333322 446666655433221 1110 001 1
Q ss_pred hhhhHhHHHHHHHHHhC----cEEEeCCeeeeccchhhhhh------hccccccc------------cCCCcccccceEE
Q 042169 132 SIHLSDLIRLAVLYKYG----GVYLDTDFVILKDFKGLRNA------IGAQGVDQ------------VTHKWTTLNGAAM 189 (286)
Q Consensus 132 ~a~~SD~~R~~lL~~~G----GiYlD~Dv~~~rpl~~l~~~------~~~~~~~~------------~~~~~~~l~n~~~ 189 (286)
-..+-+.|+.+-.... =+|+|+|++++++++++.+. ++...... .......+|.|||
T Consensus 79 -~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGv~ 157 (248)
T cd04194 79 -ISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGVL 157 (248)
T ss_pred -ccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeecch
Confidence 1245677888777555 58999999999999987542 12111000 0011246788888
Q ss_pred EeeCC----CHHHHHHHHHHHHh
Q 042169 190 VFDKR----HPILFDFLQEFTTT 208 (286)
Q Consensus 190 ~~~~~----hp~l~~~l~~~~~~ 208 (286)
..... ..+..++++.+.+.
T Consensus 158 l~nl~~~r~~~~~~~~~~~~~~~ 180 (248)
T cd04194 158 LINLKKWREENITEKLLELIKEY 180 (248)
T ss_pred heeHHHHHHhhhHHHHHHHHHhC
Confidence 87654 34555666655543
No 14
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=86.54 E-value=2.5 Score=38.67 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred HHHHHHHHH----hC-cEEEeCCeeeeccchhhhh
Q 042169 138 LIRLAVLYK----YG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 138 ~~R~~lL~~----~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
++|+.+-.- +. =+|+|+|++|..++.+|.+
T Consensus 85 y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~ 119 (280)
T cd06431 85 LMKLVLTEALPSDLEKVIVLDTDITFATDIAELWK 119 (280)
T ss_pred HHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHH
Confidence 368876332 33 4899999999999998754
No 15
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=85.26 E-value=0.94 Score=39.34 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=39.4
Q ss_pred hHhHHHHHHHHH---hC-cEEEeCCeeeeccchhhhhh------hccccc---------------cccCCCcccccceEE
Q 042169 135 LSDLIRLAVLYK---YG-GVYLDTDFVILKDFKGLRNA------IGAQGV---------------DQVTHKWTTLNGAAM 189 (286)
Q Consensus 135 ~SD~~R~~lL~~---~G-GiYlD~Dv~~~rpl~~l~~~------~~~~~~---------------~~~~~~~~~l~n~~~ 189 (286)
.+=+.|+.+-.. ++ =+|+|+|++++++++.+.+. ++.... .........+++|+|
T Consensus 84 ~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsGv~ 163 (250)
T PF01501_consen 84 PATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSGVM 163 (250)
T ss_dssp GGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEEEE
T ss_pred HHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCcEE
Confidence 334456555443 33 39999999999999987541 111111 001122367899999
Q ss_pred EeeCCCHHHHHHHHHHH
Q 042169 190 VFDKRHPILFDFLQEFT 206 (286)
Q Consensus 190 ~~~~~hp~l~~~l~~~~ 206 (286)
.+.+...--..+.+.+.
T Consensus 164 l~~~~~~~~~~~~~~~~ 180 (250)
T PF01501_consen 164 LFNPSKWRKENILQKLI 180 (250)
T ss_dssp EEEHHHHHHHHHHHHHH
T ss_pred EEeechhhhhhhhhhhh
Confidence 99876554333443333
No 16
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=83.68 E-value=6.8 Score=35.41 Aligned_cols=70 Identities=26% Similarity=0.339 Sum_probs=42.2
Q ss_pred hhHhHHHHHH---HHHhC-cEEEeCCeeeeccchhhhhh-hccccccccCCCcccccceEEEeeC----CCHHHHHHHHH
Q 042169 134 HLSDLIRLAV---LYKYG-GVYLDTDFVILKDFKGLRNA-IGAQGVDQVTHKWTTLNGAAMVFDK----RHPILFDFLQE 204 (286)
Q Consensus 134 ~~SD~~R~~l---L~~~G-GiYlD~Dv~~~rpl~~l~~~-~~~~~~~~~~~~~~~l~n~~~~~~~----~hp~l~~~l~~ 204 (286)
..+-++|+.+ |-..+ =+|||+|++|.+++++|.+. ++-...... ...++.|||.... .+-+...+++.
T Consensus 98 s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav---~dyfNsGV~linl~~wr~~~i~~~~~~~ 174 (257)
T cd06429 98 SLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAV---ETSWNPGVNVVNLTEWRRQNVTETYEKW 174 (257)
T ss_pred CHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEE---hhhcccceEEEeHHHHHhccHHHHHHHH
Confidence 4567888877 33333 49999999999999998642 110000000 0157888888763 34455555554
Q ss_pred HH
Q 042169 205 FT 206 (286)
Q Consensus 205 ~~ 206 (286)
+.
T Consensus 175 ~~ 176 (257)
T cd06429 175 ME 176 (257)
T ss_pred HH
Confidence 44
No 17
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=82.92 E-value=7.9 Score=33.26 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=64.5
Q ss_pred hhhHhHHHHHHHHHhCcEEEeCCeeeeccchhhh-h---hhcccccccc----CCCcccccceEEEeeCCCHHHHHHHHH
Q 042169 133 IHLSDLIRLAVLYKYGGVYLDTDFVILKDFKGLR-N---AIGAQGVDQV----THKWTTLNGAAMVFDKRHPILFDFLQE 204 (286)
Q Consensus 133 a~~SD~~R~~lL~~~GGiYlD~Dv~~~rpl~~l~-~---~~~~~~~~~~----~~~~~~l~n~~~~~~~~hp~l~~~l~~ 204 (286)
..+..+++-.+-.-+-=+++|+|++.+|+..++. + .+.+...... ......+|.|++.+++ +|-.+++++.
T Consensus 53 ~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~-t~~~~~~~~~ 131 (212)
T PF03407_consen 53 WLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRP-TPRTIAFLED 131 (212)
T ss_pred HHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhccCCCceEEecCCCcccchhhcCCccccceEEEec-CHHHHHHHHH
Confidence 4667777655555555799999999999876654 2 1222221100 1112346788888887 5555555555
Q ss_pred HHHhcCCCcccccccHHHHHHHHHHcCC-CCCcEEEecCCccc
Q 042169 205 FTTTFDGSKWGHNGPYLLTRVIQRVGNT-PGYNLTILGLKAFY 246 (286)
Q Consensus 205 ~~~~~~~~~~~~~GP~~lt~~~~~~~~~-~~~~~~i~p~~~F~ 246 (286)
..+...... ...--.++..++.+.... .+..+.++|...|-
T Consensus 132 w~~~~~~~~-~~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~ 173 (212)
T PF03407_consen 132 WLERMAESP-GCWDQQAFNELLREQAARYGGLRVRFLPPSLFP 173 (212)
T ss_pred HHHHHHhCC-CcchHHHHHHHHHhcccCCcCcEEEEeCHHHee
Confidence 555432110 111336777777765321 23478999998884
No 18
>PLN00176 galactinol synthase
Probab=82.80 E-value=2.2 Score=40.16 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=77.5
Q ss_pred EEEEEEc-CCCCCCCHHHHHHHHHHHHHCCCCeEEEE-eCccCCccccccchhhhhcCccEEEECCChhhhhccCchHHH
Q 042169 38 QFFMIWF-SPARTFGPRDFLAVDTLMKANPQSCLVLI-SRSLDTRRGYKILKPLLDRGFKILTVTPDLPSLVKDTPAEAW 115 (286)
Q Consensus 38 ~i~~~W~-s~~~~l~~r~~caIeS~~~~~P~~~V~l~-~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~~~~tP~~~w 115 (286)
.-+.+=. ++..-++-.... ..|..+++..+.++++ +.+.+. +..+.|.+.+..|+-+.+ +. |.+.
T Consensus 23 ~AyVT~L~~n~~Y~~Ga~vL-~~SLr~~~s~~~lVvlVt~dVp~----e~r~~L~~~g~~V~~V~~-----i~--~~~~- 89 (333)
T PLN00176 23 RAYVTFLAGNGDYVKGVVGL-AKGLRKVKSAYPLVVAVLPDVPE----EHRRILVSQGCIVREIEP-----VY--PPEN- 89 (333)
T ss_pred eEEEEEEecCcchHHHHHHH-HHHHHHhCCCCCEEEEECCCCCH----HHHHHHHHcCCEEEEecc-----cC--Cccc-
Confidence 3444433 344455554444 7888888888887665 444321 112334444555543321 10 1111
Q ss_pred HHhhhcCccCCCCCCchhhhHhHHHHHHHHHhC-cEEEeCCeeeeccchhhhhh----hccccc-------c--------
Q 042169 116 LKKIKNGKIDPGKNPLSIHLSDLIRLAVLYKYG-GVYLDTDFVILKDFKGLRNA----IGAQGV-------D-------- 175 (286)
Q Consensus 116 ~~~~~~g~~~~~~~~~~a~~SD~~R~~lL~~~G-GiYlD~Dv~~~rpl~~l~~~----~~~~~~-------~-------- 175 (286)
+ ..+.. .. +....+ -+|+.-|.+|- =+|||+|+++++++++|.+. ++.-.. .
T Consensus 90 -~----~~~~~-~~-~~i~~t-Kl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~ 161 (333)
T PLN00176 90 -Q----TQFAM-AY-YVINYS-KLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIG 161 (333)
T ss_pred -c----ccccc-ch-hhhhhh-hhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEeccccccccccccccccc
Confidence 0 00000 00 011122 24444456665 69999999999999998642 100000 0
Q ss_pred -----c---------cCCCcccccceEEEeeCCCHHHHHHHHHHHH
Q 042169 176 -----Q---------VTHKWTTLNGAAMVFDKRHPILFDFLQEFTT 207 (286)
Q Consensus 176 -----~---------~~~~~~~l~n~~~~~~~~hp~l~~~l~~~~~ 207 (286)
+ +......+|.|+|...|..-....+++.+..
T Consensus 162 ~c~~~~~~~~wp~~~g~~~~~yFNSGVlvinps~~~~~~ll~~l~~ 207 (333)
T PLN00176 162 YCQQCPDKVTWPAELGPPPPLYFNAGMFVFEPSLSTYEDLLETLKI 207 (333)
T ss_pred ccccchhhccchhhccCCCCCeEEeEEEEEEcCHHHHHHHHHHHHh
Confidence 0 0001136899999999988777888876653
No 19
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=77.43 E-value=12 Score=35.12 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=59.5
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHCC--CCeEEEEeCccCCccccccchhhhhc-CccEEEECCChhhhhccCchHHHHHhh
Q 042169 43 WFSPARTFGPRDFLAVDTLMKANP--QSCLVLISRSLDTRRGYKILKPLLDR-GFKILTVTPDLPSLVKDTPAEAWLKKI 119 (286)
Q Consensus 43 W~s~~~~l~~r~~caIeS~~~~~P--~~~V~l~~~~~~~~~~~~~~~~l~~~-~~~v~~~~~d~~~~~~~tP~~~w~~~~ 119 (286)
.-.+..-+-..-. ||-|+..+|+ .+++.++..+.+.. --..++++.+. .-.+....+|.+.+- .+|. .
T Consensus 7 ~a~D~nY~~~~gv-sI~SiL~~n~~~~~~fhil~~~i~~e-~~~~l~~~~~~f~~~i~~~~id~~~~~-~~~~----~-- 77 (325)
T COG1442 7 FAFDKNYLIPAGV-SIYSLLEHNRKIFYKFHILVDGLNEE-DKKKLNETAEPFKSFIVLEVIDIEPFL-DYPP----F-- 77 (325)
T ss_pred EEcccccchhHHH-HHHHHHHhCccccEEEEEEecCCCHH-HHHHHHHHHHhhccceeeEEEechhhh-cccc----c--
Confidence 3334444434334 5999999999 67888887765321 01112222221 123444444555543 3331 0
Q ss_pred hcCccCCCCCCchhhhHhHHHHHHHHHhCc----EEEeCCeeeeccchhhh
Q 042169 120 KNGKIDPGKNPLSIHLSDLIRLAVLYKYGG----VYLDTDFVILKDFKGLR 166 (286)
Q Consensus 120 ~~g~~~~~~~~~~a~~SD~~R~~lL~~~GG----iYlD~Dv~~~rpl~~l~ 166 (286)
.. . +. .+=++||.+=--..- +|+|+|++|.++++.+.
T Consensus 78 -~~-----~---~s-~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf 118 (325)
T COG1442 78 -TK-----R---FS-KMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELF 118 (325)
T ss_pred -cc-----c---hH-HHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHH
Confidence 00 1 12 556778776555444 99999999999999865
No 20
>PLN03181 glycosyltransferase; Provisional
Probab=66.26 E-value=65 Score=31.35 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=46.0
Q ss_pred hhHhHHHHHHHHHhC----cEEEeCCeeeeccchhh--h-----hh--hccccccccCCCcccccceEEEeeCCCHHHHH
Q 042169 134 HLSDLIRLAVLYKYG----GVYLDTDFVILKDFKGL--R-----NA--IGAQGVDQVTHKWTTLNGAAMVFDKRHPILFD 200 (286)
Q Consensus 134 ~~SD~~R~~lL~~~G----GiYlD~Dv~~~rpl~~l--~-----~~--~~~~~~~~~~~~~~~l~n~~~~~~~~hp~l~~ 200 (286)
.+-+++|-+++ +|- =.|||.|.+++.|--.+ . +. .|..........|..+|+|+|..+ +++.-.+
T Consensus 184 aKipalRaAM~-a~PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p~~vy~~qdw~GlN~GsFLIR-NcqWSl~ 261 (453)
T PLN03181 184 AKLPVVRAAML-AHPEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWPKLIYEKRSWTALNAGVFLIR-NCQWSLD 261 (453)
T ss_pred hHHHHHHHHHH-HCCCceEEEEecCCceeecCCCCCCHhhcCCccccccCCcccccccccccccceeeeEEe-cCHHHHH
Confidence 45677786665 343 37999999999873222 1 11 111111111245788999998877 8999999
Q ss_pred HHHHHHH
Q 042169 201 FLQEFTT 207 (286)
Q Consensus 201 ~l~~~~~ 207 (286)
+|+....
T Consensus 262 LLDaWa~ 268 (453)
T PLN03181 262 FMDAWAS 268 (453)
T ss_pred HHHHHHh
Confidence 9988664
No 21
>PLN02718 Probable galacturonosyltransferase
Probab=65.08 E-value=16 Score=36.95 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=63.0
Q ss_pred ceEEEEEEcCCCCCCCHHHHHHHHHHHHH--CCC-CeEEEEeCccCCccccccchhhhhc-CccEEEECCChhhhhccCc
Q 042169 36 ATQFFMIWFSPARTFGPRDFLAVDTLMKA--NPQ-SCLVLISRSLDTRRGYKILKPLLDR-GFKILTVTPDLPSLVKDTP 111 (286)
Q Consensus 36 ~~~i~~~W~s~~~~l~~r~~caIeS~~~~--~P~-~~V~l~~~~~~~~~~~~~~~~l~~~-~~~v~~~~~d~~~~~~~tP 111 (286)
...+|++-.++.- + --.-+|.|...+ +|+ ....|+++..... .-..+..+... ..+|++..+|-...+.+.-
T Consensus 311 ~~~~Hia~~sDNv-l--aasVvInSil~Ns~np~~ivFHVvTD~is~~-~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~ 386 (603)
T PLN02718 311 PDLYHYVVFSDNV-L--ACSVVVNSTISSSKEPEKIVFHVVTDSLNYP-AISMWFLLNPPGKATIQILNIDDMNVLPADY 386 (603)
T ss_pred CcceeEEEEcCCc-e--eEEEEhhhhhhccCCCCcEEEEEEeCCCCHH-HHHHHHHhCCCCCcEEEEEecchhccccccc
Confidence 4458999998872 2 233458999988 666 3445666653211 10111111111 2367766554211111000
Q ss_pred hHHHHHhhhcCccCCCCCCchhhhHhHHHHHHHHH---hC-cEEEeCCeeeeccchhhhh
Q 042169 112 AEAWLKKIKNGKIDPGKNPLSIHLSDLIRLAVLYK---YG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 112 ~~~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lL~~---~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
...++...+. .++ ....+-++|+.+-.- .. =+|+|+|++|.+++.+|.+
T Consensus 387 -~~~lk~l~s~--~~~----~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~ 439 (603)
T PLN02718 387 -NSLLMKQNSH--DPR----YISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWS 439 (603)
T ss_pred -hhhhhhcccc--ccc----cccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhc
Confidence 0111111111 111 234677889877332 33 4899999999999998864
No 22
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=63.61 E-value=4 Score=37.93 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=22.7
Q ss_pred HHHHHH---HHHh-CcEEEeCCeeeeccchhhhh
Q 042169 138 LIRLAV---LYKY-GGVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 138 ~~R~~l---L~~~-GGiYlD~Dv~~~rpl~~l~~ 167 (286)
+.|+.+ |-.. -=+|+|+|++|.+|++++.+
T Consensus 85 y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~ 118 (304)
T cd06430 85 AQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWS 118 (304)
T ss_pred HHHHHHHHHhhhhceEEEeccceeecCCHHHHHH
Confidence 777754 3332 35899999999999998754
No 23
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=63.38 E-value=6 Score=35.45 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHCC-CCeEEEEeCccCCccccccchhhhhc-CccEEEECCChhhhhccCchHHH
Q 042169 38 QFFMIWFSPARTFGPRDFLAVDTLMKANP-QSCLVLISRSLDTRRGYKILKPLLDR-GFKILTVTPDLPSLVKDTPAEAW 115 (286)
Q Consensus 38 ~i~~~W~s~~~~l~~r~~caIeS~~~~~P-~~~V~l~~~~~~~~~~~~~~~~l~~~-~~~v~~~~~d~~~~~~~tP~~~w 115 (286)
+|+.+ .++..-++. -.-++-|...+|. ..++.++++.... ...+.+..+.+. +.++.++.+|..+.+...|.
T Consensus 2 ni~~~-~~~~~y~~~-~~v~l~Sll~nn~~~~~fyil~~~is~-e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~--- 75 (248)
T cd06432 2 NIFSV-ASGHLYERF-LRIMMLSVMKNTKSPVKFWFIKNFLSP-QFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTE--- 75 (248)
T ss_pred eEEEE-cCcHHHHHH-HHHHHHHHHHcCCCCEEEEEEeCCCCH-HHHHHHHHHHHHhCCceEEEEecChhhhhcccc---
Confidence 46666 333322222 3556899999874 3566777765421 111233444433 34556555443232211110
Q ss_pred HHhhhcCccCCCCCCchhhhHhHHHHHH---HHH-hC-cEEEeCCeeeeccchhhhh
Q 042169 116 LKKIKNGKIDPGKNPLSIHLSDLIRLAV---LYK-YG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 116 ~~~~~~g~~~~~~~~~~a~~SD~~R~~l---L~~-~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
. . ....+ +.|+.+ |-. .+ =+|||+|++|..++.+|.+
T Consensus 76 ------~-----~---~~~~~-y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~ 117 (248)
T cd06432 76 ------K-----Q---RIIWG-YKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMD 117 (248)
T ss_pred ------c-----c---hhHHH-HHHHHHHHhhhhccCEEEEEcCCceecccHHHHHh
Confidence 0 0 00011 233322 221 33 4899999999999998764
No 24
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=59.82 E-value=5.1 Score=35.50 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHCCC-CeEEEEeCccCCccccccchhhhh-cCccEEEECCChhhhhccCchHHHHHhhhcCccCCCCCCc
Q 042169 54 DFLAVDTLMKANPQ-SCLVLISRSLDTRRGYKILKPLLD-RGFKILTVTPDLPSLVKDTPAEAWLKKIKNGKIDPGKNPL 131 (286)
Q Consensus 54 ~~caIeS~~~~~P~-~~V~l~~~~~~~~~~~~~~~~l~~-~~~~v~~~~~d~~~~~~~tP~~~w~~~~~~g~~~~~~~~~ 131 (286)
...++.|+.+++++ ..+.|+++.... .....++.+.+ .+.++.+++++...+. ..+ +. ...
T Consensus 16 ~~v~i~Sl~~~~~~~~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~~~~~~~~~~-~~~---~~----~~~-------- 78 (246)
T cd00505 16 AIVLMKSVLRHRTKPLRFHVLTNPLSD-TFKAALDNLRKLYNFNYELIPVDILDSV-DSE---HL----KRP-------- 78 (246)
T ss_pred HHHHHHHHHHhCCCCeEEEEEEccccH-HHHHHHHHHHhccCceEEEEeccccCcc-hhh---hh----cCc--------
Confidence 46679999999985 566777765321 11122333322 2345666655543322 001 00 000
Q ss_pred hhhhHhHHHHHHHH--H-hC-cEEEeCCeeeeccchhhhhh------hccccccc-------------cCCCcccccceE
Q 042169 132 SIHLSDLIRLAVLY--K-YG-GVYLDTDFVILKDFKGLRNA------IGAQGVDQ-------------VTHKWTTLNGAA 188 (286)
Q Consensus 132 ~a~~SD~~R~~lL~--~-~G-GiYlD~Dv~~~rpl~~l~~~------~~~~~~~~-------------~~~~~~~l~n~~ 188 (286)
...+=+.|+.+-. . +. =+|||+|++++++++++.+. +|...... .......+++||
T Consensus 79 -~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsGV 157 (246)
T cd00505 79 -IKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGV 157 (246)
T ss_pred -cccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeeee
Confidence 1223356666522 2 33 48999999999999997642 22111100 001124689999
Q ss_pred EEeeCCCHHHHHHHHHHHHhcC--CCcccccccHHHHHHHHHHcCCCCCcEEEecCCc
Q 042169 189 MVFDKRHPILFDFLQEFTTTFD--GSKWGHNGPYLLTRVIQRVGNTPGYNLTILGLKA 244 (286)
Q Consensus 189 ~~~~~~hp~l~~~l~~~~~~~~--~~~~~~~GP~~lt~~~~~~~~~~~~~~~i~p~~~ 244 (286)
|....+----..+++...+... .......-..++..++...+ ..+..+|..+
T Consensus 158 mlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~----~~i~~L~~~w 211 (246)
T cd00505 158 FVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVP----FIVKSLPCIW 211 (246)
T ss_pred EEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcCC----CeEEECCCee
Confidence 9988754433333333322210 01122233466666665432 1366777654
No 25
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=52.31 E-value=25 Score=34.67 Aligned_cols=99 Identities=14% Similarity=0.245 Sum_probs=69.0
Q ss_pred ChhhhcccCCceeecc-CCCchhhHHHHhhhccC------------------CcceEEEEEEcCCCCCCCHHHHHHHHHH
Q 042169 1 MEWFRKKLPDLEVLKS-TNLSRSFHDRVVKFSKN------------------QCATQFFMIWFSPARTFGPRDFLAVDTL 61 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~------------------~~~~~i~~~W~s~~~~l~~r~~caIeS~ 61 (286)
|.|||...+.|++=-+ ++-.+.-...|.+|+.+ ...+.+-|-|. +..+.-.+| |
T Consensus 307 iRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s------~vV~~ill~-A 379 (556)
T KOG1467|consen 307 IRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSS------SVVNMILLE-A 379 (556)
T ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecch------HHHHHHHHH-H
Confidence 4688888887776533 55566666777777652 22333344443 335555566 8
Q ss_pred HHHCCCCeEEEEeCccCCccccccchhhhhcCccEEEECCChhhhh
Q 042169 62 MKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVTPDLPSLV 107 (286)
Q Consensus 62 ~~~~P~~~V~l~~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~~ 107 (286)
.+.-++++|+|++ +.++..|...++.|.++|.|+.++.++--.|+
T Consensus 380 ~~~~k~frVvVVD-SRP~~EG~~~lr~Lv~~GinctYv~I~a~syi 424 (556)
T KOG1467|consen 380 KELGKKFRVVVVD-SRPNLEGRKLLRRLVDRGINCTYVLINAASYI 424 (556)
T ss_pred HHhCcceEEEEEe-CCCCcchHHHHHHHHHcCCCeEEEEehhHHHH
Confidence 8999999999884 44566788888999999999998888876665
No 26
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=46.64 E-value=33 Score=28.22 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=40.4
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCccCCccccccchhhhhcCccEEEECCChhhh
Q 042169 39 FFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVTPDLPSL 106 (286)
Q Consensus 39 i~~~W~s~~~~l~~r~~caIeS~~~~~P~~~V~l~~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~ 106 (286)
++..=+|.. .+.. -.-.|.|.++..|+-+++|++=++.. ..++.|.+...|++++..|...|
T Consensus 63 vfVSa~S~~-h~~~-~~~~i~si~~~~P~~k~ilY~LgL~~----~~i~~L~~~~~n~evr~Fn~s~Y 124 (142)
T PF07801_consen 63 VFVSATSDN-HFNE-SMKSISSIRKFYPNHKIILYDLGLSE----EQIKKLKKNFCNVEVRKFNFSKY 124 (142)
T ss_pred EEEEEecch-HHHH-HHHHHHHHHHHCCCCcEEEEeCCCCH----HHHHHHHhcCCceEEEECCCccC
Confidence 344444443 2322 45569999999999999999866533 22445554347888888887665
No 27
>PLN02659 Probable galacturonosyltransferase
Probab=45.28 E-value=13 Score=37.09 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=27.7
Q ss_pred hhhhHhHHHHHH--HH-HhC-cEEEeCCeeeeccchhhhh
Q 042169 132 SIHLSDLIRLAV--LY-KYG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 132 ~a~~SD~~R~~l--L~-~~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
+.-..-++|+.+ |. +.. =+|||+|++|.++|.+|.+
T Consensus 326 ylS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~ 365 (534)
T PLN02659 326 YNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWD 365 (534)
T ss_pred ceeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHh
Confidence 356778999877 33 233 4899999999999999864
No 28
>PLN02870 Probable galacturonosyltransferase
Probab=44.01 E-value=14 Score=36.84 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=27.7
Q ss_pred hhhhHhHHHHHHHHH---hC-cEEEeCCeeeeccchhhhh
Q 042169 132 SIHLSDLIRLAVLYK---YG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 132 ~a~~SD~~R~~lL~~---~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
+.....++|+.+=.- .. =+|||+|++|.++|.+|.+
T Consensus 325 ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~ 364 (533)
T PLN02870 325 YISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWD 364 (533)
T ss_pred ccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhh
Confidence 346778999877332 22 4899999999999999864
No 29
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=43.16 E-value=1.6e+02 Score=23.56 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=57.7
Q ss_pred hhcccCCceee-ccCCCchhhHHHHhhhccCCcceEEEEEEcCCCCCCCHHHHHHHHHHHHHCC-CCeEEEEeCccCCcc
Q 042169 4 FRKKLPDLEVL-KSTNLSRSFHDRVVKFSKNQCATQFFMIWFSPARTFGPRDFLAVDTLMKANP-QSCLVLISRSLDTRR 81 (286)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~i~~~W~s~~~~l~~r~~caIeS~~~~~P-~~~V~l~~~~~~~~~ 81 (286)
+++.+|++.|- .++.....-.+++.+.++......+-++..|....... ..++...+.-+ +.+|++.+...+...
T Consensus 17 ~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~~~~~~d~vvi~lGtNd~~~~---~nl~~ii~~~~~~~~ivlv~~~~~~~~ 93 (150)
T cd01840 17 LQEIFPNIQIDAKVGRQMSEAPDLIRQLKDSGKLRKTVVIGLGTNGPFTK---DQLDELLDALGPDRQVYLVNPHVPRPW 93 (150)
T ss_pred HHHHCCCCEEEeeecccHHHHHHHHHHHHHcCCCCCeEEEEecCCCCCCH---HHHHHHHHHcCCCCEEEEEECCCCcch
Confidence 56778888776 34444455555666665544445678888888876543 33555555554 578877765421110
Q ss_pred ---ccccchhhhhcCccEEEECCChhhhhccCc
Q 042169 82 ---GYKILKPLLDRGFKILTVTPDLPSLVKDTP 111 (286)
Q Consensus 82 ---~~~~~~~l~~~~~~v~~~~~d~~~~~~~tP 111 (286)
-...++.+.+++.++.++ |....+.+.|
T Consensus 94 ~~~~n~~~~~~a~~~~~v~~i--d~~~~~~~~~ 124 (150)
T cd01840 94 EPDVNAYLLDAAKKYKNVTII--DWYKAAKGHP 124 (150)
T ss_pred HHHHHHHHHHHHHHCCCcEEe--cHHHHhcccc
Confidence 012344455555577765 4444444333
No 30
>PLN02867 Probable galacturonosyltransferase
Probab=42.35 E-value=15 Score=36.72 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=28.3
Q ss_pred hhhhHhHHHHHHHHHhC----cEEEeCCeeeeccchhhhh
Q 042169 132 SIHLSDLIRLAVLYKYG----GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 132 ~a~~SD~~R~~lL~~~G----GiYlD~Dv~~~rpl~~l~~ 167 (286)
+...--++|+.+=.-.. =+|||.|++|.++|.+|.+
T Consensus 327 ylS~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwd 366 (535)
T PLN02867 327 CLSLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWE 366 (535)
T ss_pred hhhHHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHh
Confidence 35666889988765443 4899999999999999864
No 31
>PLN02829 Probable galacturonosyltransferase
Probab=41.68 E-value=16 Score=37.08 Aligned_cols=36 Identities=25% Similarity=0.568 Sum_probs=27.6
Q ss_pred hhhhHhHHHHHH--HHH-hC-cEEEeCCeeeeccchhhhh
Q 042169 132 SIHLSDLIRLAV--LYK-YG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 132 ~a~~SD~~R~~l--L~~-~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
+....-++|+.+ +.. .. =+|||+|++|.++|.+|.+
T Consensus 439 ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~ 478 (639)
T PLN02829 439 YLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWS 478 (639)
T ss_pred hhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHh
Confidence 346778899977 333 22 4899999999999999854
No 32
>PLN02523 galacturonosyltransferase
Probab=38.77 E-value=19 Score=36.13 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=27.3
Q ss_pred hhhHhHHHHHHHHH---hC-cEEEeCCeeeeccchhhhh
Q 042169 133 IHLSDLIRLAVLYK---YG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 133 a~~SD~~R~~lL~~---~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
...+-++|+.+=.- .. =+|||+|++|.++|.+|.+
T Consensus 360 lS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~ 398 (559)
T PLN02523 360 LSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWK 398 (559)
T ss_pred hhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHh
Confidence 45678899877443 33 5899999999999999864
No 33
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=38.20 E-value=19 Score=36.60 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=27.7
Q ss_pred hhhhHhHHHHHHHHH---hC-cEEEeCCeeeeccchhhhh
Q 042169 132 SIHLSDLIRLAVLYK---YG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 132 ~a~~SD~~R~~lL~~---~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
+....-++|+.+-.- .. =+|||+|++|.++|.+|.+
T Consensus 457 ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~ 496 (657)
T PLN02910 457 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWS 496 (657)
T ss_pred hhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHh
Confidence 356778899876332 22 5899999999999998764
No 34
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=37.51 E-value=77 Score=24.50 Aligned_cols=38 Identities=5% Similarity=0.146 Sum_probs=28.0
Q ss_pred hhhHHHHhhhccCCcceEEEEEEcCCCCCCCHHHHHHHHHHHH
Q 042169 21 RSFHDRVVKFSKNQCATQFFMIWFSPARTFGPRDFLAVDTLMK 63 (286)
Q Consensus 21 ~~f~~~~~~~~~~~~~~~i~~~W~s~~~~l~~r~~caIeS~~~ 63 (286)
+.|.+|+.-+ ..++|.|-.+|.++|+..++..-|..++
T Consensus 17 e~Y~~R~~~y-----~~~vwtC~~TGk~~LTy~eAl~SE~~a~ 54 (102)
T PF10537_consen 17 EEYLKRMILY-----NQRVWTCEITGKSNLTYFEALESEKEAR 54 (102)
T ss_pred HHHHHHHHHH-----hCCeeEEecCCCCCCCHHHHHHHHHHHH
Confidence 3455555533 5589999999999999998876665554
No 35
>PLN02769 Probable galacturonosyltransferase
Probab=33.64 E-value=25 Score=35.88 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=27.2
Q ss_pred hhhHhHHHHHH--HHH-hC-cEEEeCCeeeeccchhhhh
Q 042169 133 IHLSDLIRLAV--LYK-YG-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 133 a~~SD~~R~~l--L~~-~G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
.....++|+.+ |.. .. =+|||+|++|.++|.+|.+
T Consensus 435 iS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~ 473 (629)
T PLN02769 435 LSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWN 473 (629)
T ss_pred ccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhc
Confidence 45778999887 333 23 4899999999999998864
No 36
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=31.15 E-value=16 Score=23.12 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=7.6
Q ss_pred HhCcEEEeCC
Q 042169 146 KYGGVYLDTD 155 (286)
Q Consensus 146 ~~GGiYlD~D 155 (286)
+-||+|+|.+
T Consensus 24 ~C~G~W~d~~ 33 (41)
T PF13453_consen 24 SCGGIWFDAG 33 (41)
T ss_pred CCCeEEccHH
Confidence 4588998865
No 37
>PLN02742 Probable galacturonosyltransferase
Probab=30.34 E-value=31 Score=34.45 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=27.8
Q ss_pred hhhhHhHHHHHHHHHh---C-cEEEeCCeeeeccchhhhh
Q 042169 132 SIHLSDLIRLAVLYKY---G-GVYLDTDFVILKDFKGLRN 167 (286)
Q Consensus 132 ~a~~SD~~R~~lL~~~---G-GiYlD~Dv~~~rpl~~l~~ 167 (286)
.....-++|+.+-.-. + =||+|+|++|.+++.+|.+
T Consensus 335 y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~ 374 (534)
T PLN02742 335 YLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFS 374 (534)
T ss_pred cccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhc
Confidence 3467789998874332 2 4899999999999998764
No 38
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=29.61 E-value=15 Score=21.72 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=10.1
Q ss_pred EEEeeCCCHHHH
Q 042169 188 AMVFDKRHPILF 199 (286)
Q Consensus 188 ~~~~~~~hp~l~ 199 (286)
++++.||+||+-
T Consensus 8 v~G~rPg~pfl~ 19 (29)
T PF10632_consen 8 VFGARPGSPFLF 19 (29)
T ss_pred EEcccCCCcEEE
Confidence 789999999864
No 39
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=28.29 E-value=32 Score=30.64 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=15.7
Q ss_pred hHhHHHHHHHHH-hC--cEEEeCCeeeeccchhh----hh------h-------hccccc----------cc---cCCCc
Q 042169 135 LSDLIRLAVLYK-YG--GVYLDTDFVILKDFKGL----RN------A-------IGAQGV----------DQ---VTHKW 181 (286)
Q Consensus 135 ~SD~~R~~lL~~-~G--GiYlD~Dv~~~rpl~~l----~~------~-------~~~~~~----------~~---~~~~~ 181 (286)
+-+++|=++... .. =+|||+|.+.+.+--+| ++ . ....+. +. ....+
T Consensus 63 K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~t~d~ 142 (239)
T PF05637_consen 63 KIPALRAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLIITQDW 142 (239)
T ss_dssp HHHHHHHHHHH-TT-SEEEEE-TTEEE-----------------------------------------------------
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCeEEEeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 667888766542 22 47899999998763221 10 0 000000 00 02234
Q ss_pred ccccceEEEeeCCCHHHHHHHHHHHHh-cCCCccc---ccccHHHHHHHHHHcCCCCCcEEEecCCccccCCc
Q 042169 182 TTLNGAAMVFDKRHPILFDFLQEFTTT-FDGSKWG---HNGPYLLTRVIQRVGNTPGYNLTILGLKAFYPVNW 250 (286)
Q Consensus 182 ~~l~n~~~~~~~~hp~l~~~l~~~~~~-~~~~~~~---~~GP~~lt~~~~~~~~~~~~~~~i~p~~~F~P~~~ 250 (286)
..+++|+|..+ +++..+.+++..... +....|. ..=-.+|..+++..... ...+.++|...|...+.
T Consensus 143 ~gLNtGsFliR-ns~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~-~~~~~~vpq~~~nsy~~ 213 (239)
T PF05637_consen 143 NGLNTGSFLIR-NSPWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWHPEI-LSKVALVPQRWFNSYPE 213 (239)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 67888888776 688888888876653 2111121 11124555566543221 12556777766655443
No 40
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=27.68 E-value=1.6e+02 Score=28.71 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=45.6
Q ss_pred hhHhHHHHHHHHHhC---cEEEeCCeeeeccc-h-hhh-----hh--hccccccccCCCcccccceEEEeeCCCHHHHHH
Q 042169 134 HLSDLIRLAVLYKYG---GVYLDTDFVILKDF-K-GLR-----NA--IGAQGVDQVTHKWTTLNGAAMVFDKRHPILFDF 201 (286)
Q Consensus 134 ~~SD~~R~~lL~~~G---GiYlD~Dv~~~rpl-~-~l~-----~~--~~~~~~~~~~~~~~~l~n~~~~~~~~hp~l~~~ 201 (286)
.+-.++|=+++.+-- =.|||.|.+.+.+- . ++. |. .|++..-.....|..+|+|+|..+ +|+.-.++
T Consensus 183 aKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~~~NlVihg~~~~l~~~kdW~GLNtGsFLIR-NcqWSldl 261 (429)
T PLN03182 183 AKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIHGWDELVYDQKSWIGLNTGSFLIR-NCQWSLDL 261 (429)
T ss_pred hHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcCCcCeeeccchhhheeccccCccceeeEEEE-cCHHHHHH
Confidence 466778877774322 26999999997642 1 121 11 122211112346789999998776 89999999
Q ss_pred HHHHHH
Q 042169 202 LQEFTT 207 (286)
Q Consensus 202 l~~~~~ 207 (286)
++....
T Consensus 262 LDaWa~ 267 (429)
T PLN03182 262 LDAWAP 267 (429)
T ss_pred HHHHHh
Confidence 987553
No 41
>PF07958 DUF1688: Protein of unknown function (DUF1688); InterPro: IPR012469 A family of uncharacterised fungal proteins.
Probab=27.18 E-value=36 Score=32.99 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.4
Q ss_pred HHhCcEEEeCCeeeeccchhh
Q 042169 145 YKYGGVYLDTDFVILKDFKGL 165 (286)
Q Consensus 145 ~~~GGiYlD~Dv~~~rpl~~l 165 (286)
|+.||..+|+.|+.+|+-...
T Consensus 313 YRNGGLfvD~GVL~lk~~~~~ 333 (420)
T PF07958_consen 313 YRNGGLFVDLGVLTLKPEALA 333 (420)
T ss_pred hccCceEEecceeeeCChhhh
Confidence 899999999999999986543
No 42
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=26.43 E-value=66 Score=32.18 Aligned_cols=44 Identities=34% Similarity=0.585 Sum_probs=31.2
Q ss_pred hccCchHHHHHhh--hcCccCCCCCCchhhhHhHHHHHHHHHhCcEEEeCCeee
Q 042169 107 VKDTPAEAWLKKI--KNGKIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTDFVI 158 (286)
Q Consensus 107 ~~~tP~~~w~~~~--~~g~~~~~~~~~~a~~SD~~R~~lL~~~GGiYlD~Dv~~ 158 (286)
+++.+...+|..- .+|+ .|..||++|+.+|+++||||+|+|+++
T Consensus 187 ~~~~~~~~~Y~~El~lRgN--------~AAASDilRl~iL~~~GGIY~D~D~LP 232 (514)
T PF12919_consen 187 FKDKENKDNYQQELLLRGN--------YAAASDILRLYILKEYGGIYLDVDMLP 232 (514)
T ss_dssp CCTHHHHHHHHHHHHTS----------HHHHHHHHHHHHHHHH-EEEE-TT-EE
T ss_pred ccchHHHHHHHHHHHHCcC--------hhhHHHHHHHHHHHHhCCEEEecccCC
Confidence 3455666666652 2332 599999999999999999999999987
No 43
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=23.46 E-value=36 Score=32.65 Aligned_cols=25 Identities=24% Similarity=0.666 Sum_probs=22.7
Q ss_pred CcEEEecCCccccCCccchhccccC
Q 042169 235 YNLTILGLKAFYPVNWIQINGFYKK 259 (286)
Q Consensus 235 ~~~~i~p~~~F~P~~~~~~~~~f~~ 259 (286)
.+|..++.+.|||++|.+|+++|.+
T Consensus 335 ~~vn~~~i~~fy~iP~~ew~~~~~~ 359 (409)
T KOG1928|consen 335 YPVNWLEIQAFYAIPWTEWDRKFVD 359 (409)
T ss_pred CceeeeccccccccchhHhhhhhhH
Confidence 4889999999999999999999954
No 44
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=21.28 E-value=1.1e+02 Score=23.59 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHH-CCCCeEEEEeCccCCccccccchhhhhcCccEEEE
Q 042169 53 RDFLAVDTLMKA-NPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTV 99 (286)
Q Consensus 53 r~~caIeS~~~~-~P~~~V~l~~~~~~~~~~~~~~~~l~~~~~~v~~~ 99 (286)
...| ++|.+++ .++.+|+|+.++. +.....+++++.+...++.++
T Consensus 13 l~~~-l~sl~~q~~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i 58 (169)
T PF00535_consen 13 LERT-LESLLKQTDPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYI 58 (169)
T ss_dssp HHHH-HHHHHHHSGCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEE
T ss_pred HHHH-HHHHhhccCCCEEEEEecccc-ccccccccccccccccccccc
Confidence 3444 9999998 6778999888764 222334455554434456654
No 45
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=20.40 E-value=76 Score=29.64 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=26.3
Q ss_pred CchHHHHHhhhcC-----ccCCCCCCchhhhHhHHHHHHHHHhCcEEEeCC
Q 042169 110 TPAEAWLKKIKNG-----KIDPGKNPLSIHLSDLIRLAVLYKYGGVYLDTD 155 (286)
Q Consensus 110 tP~~~w~~~~~~g-----~~~~~~~~~~a~~SD~~R~~lL~~~GGiYlD~D 155 (286)
.|...++.....+ .++-| ...+.++|+-|.++ +||||+=--
T Consensus 205 ~~~~~yi~~~~~~~~~~~~y~~R--y~gsmVaD~hr~L~---~GGif~yP~ 250 (315)
T cd00354 205 EPVKKYIDDCKAGEDGGKPYNLR--YIGSMVADVHRILV---RGGIFLYPA 250 (315)
T ss_pred HHHHHHHHHHhccccCCCCccce--eeeeeehHhHHhhh---cCeEEEccC
Confidence 3556666665544 12212 12578999999988 799998543
Done!