Query 042169
Match_columns 286
No_of_seqs 247 out of 1147
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 05:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bvla1 c.68.1.22 (A:1-542) To 99.0 6.8E-10 4.9E-14 104.7 10.1 41 34-76 93-133 (542)
2 d2vk9a1 c.68.1.22 (A:2-541) Al 98.8 2.1E-09 1.6E-13 100.7 7.2 41 34-76 94-134 (540)
3 d1ll2a_ c.68.1.14 (A:) Glycoge 96.4 0.0054 3.9E-07 51.5 8.5 126 57-207 22-155 (263)
4 d1ga8a_ c.68.1.4 (A:) Galactos 94.5 0.05 3.6E-06 45.7 7.8 137 54-208 15-180 (282)
5 d1s3aa1 c.47.1.22 (A:15-99) NA 26.4 13 0.00096 24.7 1.7 39 36-75 4-44 (85)
6 d2k49a1 d.348.1.1 (A:59-110) U 21.3 29 0.0021 21.0 2.3 17 55-71 33-49 (52)
7 d2k8ea2 d.348.1.1 (A:75-126) U 18.3 36 0.0026 20.5 2.3 17 55-71 33-49 (52)
8 d1okga1 c.46.1.2 (A:7-162) 3-m 16.2 71 0.0052 23.3 4.2 94 2-99 13-121 (156)
9 d1rbli_ d.73.1.1 (I:) Ribulose 12.7 94 0.0069 21.4 3.7 39 35-73 49-89 (109)
10 d1o5za1 c.59.1.2 (A:294-430) F 12.7 2E+02 0.014 19.4 5.9 58 42-100 13-70 (137)
No 1
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]}
Probab=98.98 E-value=6.8e-10 Score=104.67 Aligned_cols=41 Identities=7% Similarity=0.202 Sum_probs=36.7
Q ss_pred CcceEEEEEEcCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCc
Q 042169 34 QCATQFFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRS 76 (286)
Q Consensus 34 ~~~~~i~~~W~s~~~~l~~r~~caIeS~~~~~P~~~V~l~~~~ 76 (286)
+.+..||++|.+|. +|..+.-+|..|.+.+||+++.+|.++
T Consensus 93 ~I~K~IH~IWIgG~--~Pd~~~~YI~~wl~~~~dy~~~lW~D~ 133 (542)
T d2bvla1 93 PVEKNLHFVWIGGQ--INDTAINYINQWKDVNSDYNVNVFYDS 133 (542)
T ss_dssp ECCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECT
T ss_pred ccCCceEEEEeCCC--CCcchHHHHHHHHHHCCCCeEEEEECC
Confidence 46788999999976 689998999999999999999999774
No 2
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]}
Probab=98.82 E-value=2.1e-09 Score=100.66 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=36.4
Q ss_pred CcceEEEEEEcCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCc
Q 042169 34 QCATQFFMIWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRS 76 (286)
Q Consensus 34 ~~~~~i~~~W~s~~~~l~~r~~caIeS~~~~~P~~~V~l~~~~ 76 (286)
..+..||++|.+|. +|..+.-.|+-|.+.+||+++.+|-++
T Consensus 94 ~veKniHfIWIaG~--ppd~~~~YIk~wl~ty~dy~~~lW~D~ 134 (540)
T d2vk9a1 94 IASKNLSFIWIGGP--ISDQSLEYYNMWKMFNKDYNIRLFYDK 134 (540)
T ss_dssp BCCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECT
T ss_pred ccccceEEEEeCCC--CCcchHHHHHHHHHhCCCCeEEEEECc
Confidence 36788999999994 689999999999999999999999654
No 3
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=96.37 E-value=0.0054 Score=51.48 Aligned_cols=126 Identities=15% Similarity=0.117 Sum_probs=72.5
Q ss_pred HHHHHHHHCCCCeEEEEe-CccCCccccccchhhhhcCccEEEECC-ChhhhhccCchHHHHHhhhcCccCCCCCCchhh
Q 042169 57 AVDTLMKANPQSCLVLIS-RSLDTRRGYKILKPLLDRGFKILTVTP-DLPSLVKDTPAEAWLKKIKNGKIDPGKNPLSIH 134 (286)
Q Consensus 57 aIeS~~~~~P~~~V~l~~-~~~~~~~~~~~~~~l~~~~~~v~~~~~-d~~~~~~~tP~~~w~~~~~~g~~~~~~~~~~a~ 134 (286)
.+.|..+++|.+.++++. ++.. . ...+.|.+.+..+..+.. +...-. . .. . .. . .-.
T Consensus 22 l~~SL~~~~~~~~~vvl~~~~i~-~---~~~~~L~~~~~~~~~v~~i~~~~~~---~-~~--~-~~-~---------~~~ 80 (263)
T d1ll2a_ 22 LGSSLKQHRTSRRLAVLTTPQVS-D---TMRKALEIVFDEVITVDILDSGDSA---H-LT--L-MK-R---------PEL 80 (263)
T ss_dssp HHHHHHHTTCCSEEEEEECTTSC-H---HHHHHHHHHCSEEEECCTTSTTSTT---H-HH--H-HH-C---------GGG
T ss_pred HHHHHHHHCCCCCEEEEECCCCC-H---HHHHHHHHhCCcceeEEeecCcchh---h-hh--h-hc-c---------ccc
Confidence 488999999999887764 4321 1 122334444445444321 221111 0 01 0 00 1 123
Q ss_pred hHhHHHHHHHHHhCc----EEEeCCeeeeccchhhhhh--hccccccccCCCcccccceEEEeeCCCHHHHHHHHHHHH
Q 042169 135 LSDLIRLAVLYKYGG----VYLDTDFVILKDFKGLRNA--IGAQGVDQVTHKWTTLNGAAMVFDKRHPILFDFLQEFTT 207 (286)
Q Consensus 135 ~SD~~R~~lL~~~GG----iYlD~Dv~~~rpl~~l~~~--~~~~~~~~~~~~~~~l~n~~~~~~~~hp~l~~~l~~~~~ 207 (286)
.+-+.|+.+.. ... +|||+|+++++++++|.+. .+.... ......+++|+|...|+--..+.+.+.+.+
T Consensus 81 ~~ty~Kl~i~~-l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~---~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~ 155 (263)
T d1ll2a_ 81 GVTLTKLHCWS-LTQYSKCVFMDADTLVLANIDDLFEREELSAAPD---PGWPDCFNSGVFVYQPSVETYNQLLHVASE 155 (263)
T ss_dssp HHHHHHGGGGG-CTTCSEEEEECTTEEECSCCGGGGGSCSSEEEEC---SSSTTSEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhh-hcccceEEEeCCCEEEecCHHHHhcCCccceecc---CCCcccccCCcEEECccHHHHHHHHHHHHh
Confidence 45678877643 444 9999999999999998753 222111 122356889999999987666666665554
No 4
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=94.46 E-value=0.05 Score=45.68 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHCCCC--eEEEEeCccCCccccccchhh-hhcCccEEEECCChhhhhccCchHHHHHhhhcCccCCCCCC
Q 042169 54 DFLAVDTLMKANPQS--CLVLISRSLDTRRGYKILKPL-LDRGFKILTVTPDLPSLVKDTPAEAWLKKIKNGKIDPGKNP 130 (286)
Q Consensus 54 ~~caIeS~~~~~P~~--~V~l~~~~~~~~~~~~~~~~l-~~~~~~v~~~~~d~~~~~~~tP~~~w~~~~~~g~~~~~~~~ 130 (286)
-..++.|..++||+. .+.+++++.+... ...+... ...+.+|.++.++..++. +.|.. .+.++
T Consensus 15 ~~~~i~SL~~~~~~~~~~~~il~~~~~~~~-~~~l~~~~~~~~~~i~~~~~~~~~~~-~~~~~------------~~~~s 80 (282)
T d1ga8a_ 15 LCVAAKSVEAAHPDTEIRFHVLDAGISEAN-RAAVAANLRGGGGNIRFIDVNPEDFA-GFPLN------------IRHIS 80 (282)
T ss_dssp HHHHHHHHHHHCTTSCCEEEEEESSCCHHH-HHHHHHTSGGGTTTEEEEECCGGGGT-TSCCC------------CTTCC
T ss_pred HHHHHHHHHHHCcCCCEEEEEEcCCCCHHH-HHHHHHHHHHcCCeEEEEECCchHhc-ccccc------------ccccC
Confidence 345699999999986 4556666543210 1112222 223457777766554432 22211 11111
Q ss_pred chhhhHhHHHHHHHH---HhC-cEEEeCCeeeeccchhhhh------hhccccccc-----------c-CCCcccccceE
Q 042169 131 LSIHLSDLIRLAVLY---KYG-GVYLDTDFVILKDFKGLRN------AIGAQGVDQ-----------V-THKWTTLNGAA 188 (286)
Q Consensus 131 ~~a~~SD~~R~~lL~---~~G-GiYlD~Dv~~~rpl~~l~~------~~~~~~~~~-----------~-~~~~~~l~n~~ 188 (286)
.+=+.|+.+=. .++ -+|||+|+++++++++|.+ .++...... . ......+++||
T Consensus 81 ----~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGV 156 (282)
T d1ga8a_ 81 ----ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGV 156 (282)
T ss_dssp ----GGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEE
T ss_pred ----HHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCCCCCceeecce
Confidence 11245654332 233 5999999999999998753 122111100 0 01124589999
Q ss_pred EEeeC----CCHHHHHHHHHHHHh
Q 042169 189 MVFDK----RHPILFDFLQEFTTT 208 (286)
Q Consensus 189 ~~~~~----~hp~l~~~l~~~~~~ 208 (286)
|.... ...+...+++.+.+.
T Consensus 157 ml~n~~~~r~~~~~~~~~~~~~~~ 180 (282)
T d1ga8a_ 157 LLINLKKWRRHDIFKMSSEWVEQY 180 (282)
T ss_dssp EEECHHHHTTSCHHHHHHHHHHHH
T ss_pred eeechhhhhhhhHHHHHHHHHHhc
Confidence 98842 455677777776654
No 5
>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.40 E-value=13 Score=24.68 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=29.0
Q ss_pred ceEEEEEEcCCCCCCCHHH--HHHHHHHHHHCCCCeEEEEeC
Q 042169 36 ATQFFMIWFSPARTFGPRD--FLAVDTLMKANPQSCLVLISR 75 (286)
Q Consensus 36 ~~~i~~~W~s~~~~l~~r~--~caIeS~~~~~P~~~V~l~~~ 75 (286)
..+|++|-++|... +.|+ .-.+.++++.||+..|.+--.
T Consensus 4 ~l~~~yc~~~~sS~-G~R~Fi~~~l~~~~~~NP~v~i~v~~~ 44 (85)
T d1s3aa1 4 EIRIHLCQRSPGSQ-GVRDFIEKRYVELKKANPDLPILIREC 44 (85)
T ss_dssp EEEEECCSSSCCCH-HHHHHHHHTHHHHHHHSTTCCEEEECC
T ss_pred EEEEEEcCCCCCcH-HHHHHHHHhHHHHHHHCCCceEEEEEc
Confidence 46799999988752 3333 345888999999999887744
No 6
>d2k49a1 d.348.1.1 (A:59-110) Uncharacterized protein SO3888 {Shewanella oneidensis [TaxId: 70863]}
Probab=21.27 E-value=29 Score=21.00 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCCeEE
Q 042169 55 FLAVDTLMKANPQSCLV 71 (286)
Q Consensus 55 ~caIeS~~~~~P~~~V~ 71 (286)
.-+|||+.++.|+..|+
T Consensus 33 ~~gI~sVk~nap~a~v~ 49 (52)
T d2k49a1 33 DNGIKSVMENGKTTTIK 49 (52)
T ss_dssp HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHhhCCCCcee
Confidence 34799999999999885
No 7
>d2k8ea2 d.348.1.1 (A:75-126) Uncharacterized protein YegP {Escherichia coli [TaxId: 562]}
Probab=18.28 E-value=36 Score=20.49 Aligned_cols=17 Identities=0% Similarity=-0.001 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCCeEE
Q 042169 55 FLAVDTLMKANPQSCLV 71 (286)
Q Consensus 55 ~caIeS~~~~~P~~~V~ 71 (286)
.-+|+|+.++.|+..|+
T Consensus 33 ~~gI~sVk~na~~a~v~ 49 (52)
T d2k8ea2 33 ETGIASVKANGTSQTVK 49 (52)
T ss_dssp HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHhcCCCCcee
Confidence 34799999999999875
No 8
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=16.24 E-value=71 Score=23.31 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=44.3
Q ss_pred hhhhcccCCceeeccC-CC-chhhHHHHhhhccCCcceEEEEEEcC---C-------CCCCCHHHHHHHHHHHHH---CC
Q 042169 2 EWFRKKLPDLEVLKST-NL-SRSFHDRVVKFSKNQCATQFFMIWFS---P-------ARTFGPRDFLAVDTLMKA---NP 66 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~-~~~f~~~~~~~~~~~~~~~i~~~W~s---~-------~~~l~~r~~caIeS~~~~---~P 66 (286)
+|+.+|+.++.|+--. .+ .+.. --.+|..+....-+|+-+.. + ..++|.... +++.... .+
T Consensus 13 ~~L~~~l~d~~iiD~r~~l~~~~~--g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~--~~~~l~~lGI~~ 88 (156)
T d1okga1 13 SEVADHLAEYRIVDCRYSLKIKDH--GSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAE--FIDWCMANGMAG 88 (156)
T ss_dssp HHHTTCGGGSEEEECCCCSSSTTT--TTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHH--HHHHHHHTTCSS
T ss_pred HHHHHhcCCCEEEEeeccCCCCcc--hHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHH--HHHHHHhccccC
Confidence 6999999999998221 11 0000 01223335444445654321 1 112444222 4444444 67
Q ss_pred CCeEEEEeCccCCccccccchhhhhcCccEEEE
Q 042169 67 QSCLVLISRSLDTRRGYKILKPLLDRGFKILTV 99 (286)
Q Consensus 67 ~~~V~l~~~~~~~~~~~~~~~~l~~~~~~v~~~ 99 (286)
+.+|+++.+......+....=.|...|+||.++
T Consensus 89 ~~~VVvYd~~~g~~~A~R~~w~L~~~G~~v~iL 121 (156)
T d1okga1 89 ELPVLCYDDECGAMGGCRLWWMLNSLGADAYVI 121 (156)
T ss_dssp SSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHcCCeeEEe
Confidence 889999964321111111111122347788765
No 9
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=12.72 E-value=94 Score=21.45 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=27.0
Q ss_pred cceEEEEEEcCCC-CCCCH-HHHHHHHHHHHHCCCCeEEEE
Q 042169 35 CATQFFMIWFSPA-RTFGP-RDFLAVDTLMKANPQSCLVLI 73 (286)
Q Consensus 35 ~~~~i~~~W~s~~-~~l~~-r~~caIeS~~~~~P~~~V~l~ 73 (286)
-....|..|..+. ..-.+ .....||.+.+.||+.-|.|+
T Consensus 49 ~~~~yW~mwklPmf~~~d~~~Vl~ele~c~~~~p~~YVRli 89 (109)
T d1rbli_ 49 PEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVA 89 (109)
T ss_dssp TTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred ccceeeeecccCcccCCCHHHHHHHHHHHHHhCCcCEEEEE
Confidence 3456888897552 12222 335679999999999999877
No 10
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.65 E-value=2e+02 Score=19.36 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=33.1
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCccCCccccccchhhhhcCccEEEEC
Q 042169 42 IWFSPARTFGPRDFLAVDTLMKANPQSCLVLISRSLDTRRGYKILKPLLDRGFKILTVT 100 (286)
Q Consensus 42 ~W~s~~~~l~~r~~caIeS~~~~~P~~~V~l~~~~~~~~~~~~~~~~l~~~~~~v~~~~ 100 (286)
++..+..+....+++ ++++...+|+.++.++......-.-..++..+.+....+.+..
T Consensus 13 iilD~AHN~~a~~~l-~~~l~~~~~~~~~~~i~g~~~dkd~~~~l~~l~~~~~~i~~~~ 70 (137)
T d1o5za1 13 YILDGAHNPHGAESL-VRSLKLYFNGEPLSLVIGILDDKNREDILRKYTGIFERVIVTR 70 (137)
T ss_dssp EEECCCCSHHHHHHH-HHHHHHHCTTCCEEEEECCCTTSCHHHHHGGGTTTCSEEEECC
T ss_pred EEEECCCCHHHHHHH-HHHHHhhhccccceeeecccccccHHHHHHHHHhhcceeeeee
Confidence 355666676665555 8999999998877666543221111234555544333455443
Done!