BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042170
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K30|A Chain A, Crystal Structure Analysis Of Squash (Cucurbita Moschata)
Glycerol-3-Phosphate (1)-Acyltransferase
Length = 368
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 346 TERTLYVCNHRTLLDPLYLSFALKKNLTAVTYSLSRMSEILAPIKTVRMTRNRDQDAKLV 405
E T++V R L DPL F++ +NL V YS M +I +T R R K +
Sbjct: 160 AENTIFVAGDRVLADPLCKPFSIGRNLICV-YSKKHMFDIPELTETKRKANTR--SLKEM 216
Query: 406 KSLLNQGD--LVICPEGTTCR 424
LL G + I P G R
Sbjct: 217 ALLLRGGSQLIWIAPSGGRDR 237
>pdb|2GVJ|A Chain A, Crystal Structure Of Human Nmprtase In Complex With Fk866
pdb|2GVJ|B Chain B, Crystal Structure Of Human Nmprtase In Complex With Fk866
Length = 491
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 445 VASNSHVTMFYGT-TAGGLKCLDPFFFLMNPSPGYTMQLLEGVSGLSMCQDGNESRFD 501
+ +++H+ F GT T GL + ++ +P PGY++ E + + +D + F+
Sbjct: 206 IGASAHLVNFKGTDTVAGLALIKKYYGTKDPVPGYSVPAAEHSTITAWGKDHEKDAFE 263
>pdb|2GVG|A Chain A, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|B Chain B, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|C Chain C, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|D Chain D, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|E Chain E, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|F Chain F, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
Length = 491
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 445 VASNSHVTMFYGT-TAGGLKCLDPFFFLMNPSPGYTMQLLEGVSGLSMCQDGNESRFD 501
+ +++H+ F GT T GL + ++ +P PGY++ E + + +D + F+
Sbjct: 206 IGASAHLVNFKGTDTVAGLALIKKYYGTKDPVPGYSVPAAEHSTITAWGKDHEKDAFE 263
>pdb|3DGR|A Chain A, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DGR|B Chain B, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DHD|A Chain A, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHD|B Chain B, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHF|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DHF|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DKJ|A Chain A, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKJ|B Chain B, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKL|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
pdb|3DKL|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
Length = 484
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 445 VASNSHVTMFYGT-TAGGLKCLDPFFFLMNPSPGYTMQLLEGVSGLSMCQDGNESRFD 501
+ +++H+ F GT T GL + ++ +P PGY++ E + + +D + F+
Sbjct: 206 IGASAHLVNFKGTDTVAGLALIKKYYGTKDPVPGYSVPAAEHSTITAWGKDHEKDAFE 263
>pdb|2E5B|A Chain A, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5B|B Chain B, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5C|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5C|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5D|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
pdb|2E5D|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
Length = 499
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 445 VASNSHVTMFYGT-TAGGLKCLDPFFFLMNPSPGYTMQLLEGVSGLSMCQDGNESRFD 501
+ +++H+ F GT T GL + ++ +P PGY++ E + + +D + F+
Sbjct: 214 IGASAHLVNFKGTDTVAGLALIKKYYGTKDPVPGYSVPAAEHSTITAWGKDHEKDAFE 271
>pdb|3P2N|A Chain A, Discovery And Structural Characterization Of A New
Glycoside Hydrolase Family Abundant In Coastal Waters
That Was Annotated As 'hypothetical Protein'
pdb|3P2N|B Chain B, Discovery And Structural Characterization Of A New
Glycoside Hydrolase Family Abundant In Coastal Waters
That Was Annotated As 'hypothetical Protein'
Length = 408
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 318 LIFSGLRFTVITKPKTSRSFQNSRDC-QKTERTLYVCNHRTLLDPLYLSFALKKNLTAVT 376
LIF+ + + PKT++ +++ DC +K T +H + D +LS A K+ L T
Sbjct: 8 LIFAAVLVSACNSPKTTKEMKSTDDCPEKVTFTPEQIDHLGITDTNHLSAASKRALKWPT 67
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|B Chain B, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|C Chain C, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|D Chain D, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
Length = 220
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 51 YTSLVHISDQVSERTLIFN-VEGFLLKSSSLFPYFMLVAFEAGGLI-RAFLLFILYPLIC 108
Y++ ++ + V +TL F+ +EG+ LK+ F+ V + ++ + FLL P +C
Sbjct: 136 YSAGTYLCNYVMFKTLHFSKIEGYPLKAG-----FIHVPYTPDQVVNKFFLLGKNTPSMC 190
Query: 109 LAGEEMGLKIMVMVSFFWVKKD 130
L E +++ V VS +++KD
Sbjct: 191 LEAEIKAIELAVKVSLDYLEKD 212
>pdb|1IUQ|A Chain A, The 1.55 A Crystal Structure Of Glycerol-3-phosphate
Acyltransferase
Length = 367
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 346 TERTLYVCNHRTLLDPLYLSFALKKNLTAVTYSLSRMSEILAPIKTVRMTRNR 398
E T++V R L DPL F++ +NL V YS +I +T R R
Sbjct: 159 AENTIFVAGDRVLADPLCKPFSIGRNLICV-YSKKHXFDIPELTETKRKANTR 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,551,233
Number of Sequences: 62578
Number of extensions: 576691
Number of successful extensions: 1821
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1819
Number of HSP's gapped (non-prelim): 12
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)