BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042171
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 43/160 (26%)
Query: 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
KKTIE+GVFTGYSL LTAL+IP+DG+ITAID A V+HKINFIES+A
Sbjct: 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA 131
Query: 51 LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMRE------------------------- 85
+ LD LL+ E+E ++D+ F+DADK NY Y
Sbjct: 132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQP 191
Query: 86 --QVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESV 123
+VPD F +++A+++LN+ L DP +++ H+ LG+ +
Sbjct: 192 ESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGI 230
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 45/170 (26%)
Query: 1 MRLKL---KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK 42
M LKL K T+EIGV+TGYSL TAL IPEDG+I A+D A VDHK
Sbjct: 73 MLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHK 132
Query: 43 INFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV--------------- 87
I+F E AL VLD+++KD +N ++D+ F+DADKDNY NY + +
Sbjct: 133 IDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL 192
Query: 88 --------PD----HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
PD + + +L+LN++L DP +++ + +G+ + I
Sbjct: 193 WNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITI 242
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 16/94 (17%)
Query: 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIES 48
+ KK +E+G FTGYS +L +P+DGQ+ D A+ +HKI
Sbjct: 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119
Query: 49 EALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
AL L LL + E FD+ F+DADK NY NY
Sbjct: 120 PALDTLHSLLNEG-GEHQFDFIFIDADKTNYLNY 152
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 66/156 (42%), Gaps = 37/156 (23%)
Query: 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
K+ +EIGVF GYS AL +P DGQI A D A V KI+ A
Sbjct: 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133
Query: 51 LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRG----------------- 93
L+ L+QL + + FD F+DADK NY Y + RG
Sbjct: 134 LATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEV 192
Query: 94 ----SSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
+ Q + NR L D V++S + LG+ + +
Sbjct: 193 DPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTL 228
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE 47
++ KK +++G FTGYS AL +P DG++ + A +HKI+
Sbjct: 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL 127
Query: 48 SEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNY 82
AL LD+LL E FD A +DADK+N Y
Sbjct: 128 KPALETLDELLAAGEAG-TFDVAVVDADKENCSAY 161
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 27/103 (26%)
Query: 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID--------ARVDHKINFIESE-------A 50
K+ IEIG FTGYS A +PEDG+I D AR K N +E++ A
Sbjct: 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 51 LSVLDQLLKDSENEVNF--DYA---------FMDADKDNYCNY 82
L L Q+L DS++ ++ D+A F+DADK+NY NY
Sbjct: 122 LETL-QVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNY 163
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 19/96 (19%)
Query: 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIES 48
+ K+ +EIG GYS A +P DGQ+ ++ A VD ++ E
Sbjct: 63 QAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG 122
Query: 49 EALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR 84
AL L+ L + FD F+DADK N +Y+R
Sbjct: 123 PALQSLESLGECPA----FDLIFIDADKPNNPHYLR 154
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEA 50
KK I+IG FTGYS L +P+DG + D A + KI S A
Sbjct: 66 KKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA 125
Query: 51 LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV 87
L +L+ + +D ++DADK N Y E +
Sbjct: 126 KDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESL 161
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDH---------------KINFIESEA 50
+ +EIG GYS A + G++ ++A H ++ A
Sbjct: 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA 119
Query: 51 LSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM 83
L L Q+ ++E FD+ F+DADK N Y
Sbjct: 120 LDSLQQI--ENEKYEPFDFIFIDADKQNNPAYF 150
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 47 ESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM 83
+++ L D + K SEN N +F DA KD+Y Y+
Sbjct: 22 DAQGLWTWDDVEKPSENWPNGALSFKDAKKDDYGYYL 58
>pdb|2J44|A Chain A, Alpha-Glucan Binding By A Streptococcal Virulence Factor
Length = 217
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 47 ESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYM 83
+++ L D + K SEN N +F DA KD+Y Y+
Sbjct: 17 DAQGLWTWDDVEKPSENWPNGALSFKDAKKDDYGYYL 53
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 80 CNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVD 124
C Y + V +HF G K+ I L R L + P +L+ LG +++
Sbjct: 484 CIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALE 528
>pdb|2F9C|A Chain A, Crystal Structure Of Ydck From Salmonella Cholerae. Nesg
Target Scr6
pdb|2F9C|B Chain B, Crystal Structure Of Ydck From Salmonella Cholerae. Nesg
Target Scr6
Length = 334
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 67 FDYAFMDADKDN---YCNYMREQVPDHFR---GSSKQAILDLNRS-------LVDDPCVQ 113
FD+A ++ DKDN C+ + V H R G+ + AI L S L++ CV
Sbjct: 189 FDFALIEGDKDNNVWICDCAK--VYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVL 246
Query: 114 LSHVALGESVDI 125
HV +G ++
Sbjct: 247 KHHVLVGGHAEV 258
>pdb|2PIG|A Chain A, Crystal Structure Of Ydck From Salmonella Cholerae At 2.38
A Resolution. Northeast Structural Genomics Target Scr6
pdb|2PIG|B Chain B, Crystal Structure Of Ydck From Salmonella Cholerae At 2.38
A Resolution. Northeast Structural Genomics Target Scr6
Length = 334
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 67 FDYAFMDADKDN---YCNYMREQVPDHFR---GSSKQAILDLNRS-------LVDDPCVQ 113
FD+A ++ DKDN C+ + V H R G+ + AI L S L++ CV
Sbjct: 189 FDFALIEGDKDNNVWICDCAK--VYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVL 246
Query: 114 LSHVALGESVDI 125
HV +G ++
Sbjct: 247 KHHVLVGGHAEV 258
>pdb|1B5D|A Chain A, Dcmp Hydroxymethylase From T4 (Intact)
pdb|1B5E|A Chain A, Dcmp Hydroxymethylase From T4
pdb|1B49|A Chain A, Dcmp Hydroxymethylase From T4 (Phosphate-Bound)
pdb|1B49|C Chain C, Dcmp Hydroxymethylase From T4 (Phosphate-Bound)
pdb|1B5D|B Chain B, Dcmp Hydroxymethylase From T4 (Intact)
pdb|1B5E|B Chain B, Dcmp Hydroxymethylase From T4
Length = 246
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 36 DARVDHKINFIESEALSVLD---------QLLKDSENEVNFDYAFMDADKDNYCNY---M 83
D + ++ + +S++L V D Q + S+ E+N +Y + +DNY Y +
Sbjct: 54 DEYIQRELEWYKSKSLFVKDIPGETPKIWQQVASSKGEINSNYGWAIWSEDNYAQYDMCL 113
Query: 84 RE--QVPDHFRG 93
E Q PD RG
Sbjct: 114 AELGQNPDSRRG 125
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 96 KQAILDLNRSLVDDPCVQLSHV 117
+QA+LDL + + DP + +SHV
Sbjct: 101 RQALLDLEQEFLGDPHLSISHV 122
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID 36
K +EIG GY +TA + EDG + +I+
Sbjct: 80 KVLEIGTGCGYHAAVTAEIVGEDGLVVSIE 109
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 69 YAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNR 104
+A +D D DNY Y R G SK A+ DL +
Sbjct: 27 HAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTK 62
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 69 YAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNR 104
+A +D D DNY Y R G SK A+ DL +
Sbjct: 50 HAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTK 85
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 69 YAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNR 104
+A +D D DNY Y R G SK A+ DL +
Sbjct: 50 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
>pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant
Length = 217
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIES 48
+K +E G+F ++LT L + E+G + + R K + I++
Sbjct: 112 RKVVEQGMFCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDT 154
>pdb|2LBO|A Chain A, Eimeria Tenella Microneme Protein 3 Mar_b Domain
Length = 123
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 70 AFMDADKDNYCNYMREQVPDH 90
A +D+DK NYC EQ P
Sbjct: 95 AVIDSDKSNYCTDKSEQQPSQ 115
>pdb|2RBG|A Chain A, Crystal Structure Of Hypothetical Protein(St0493) From
Sulfolobus Tokodaii
pdb|2RBG|B Chain B, Crystal Structure Of Hypothetical Protein(St0493) From
Sulfolobus Tokodaii
Length = 126
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 70 AFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125
+ + DN+ NY R+ D SK+ +++ + V L AL E++DI
Sbjct: 8 TLISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDI 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,504,374
Number of Sequences: 62578
Number of extensions: 131447
Number of successful extensions: 475
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 27
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)