Query 042171
Match_columns 125
No_of_seqs 146 out of 1398
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 6.1E-31 1.3E-35 192.7 13.4 122 3-125 44-201 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 3.3E-28 7.1E-33 182.6 13.5 123 3-125 78-242 (247)
3 PLN02476 O-methyltransferase 100.0 6.6E-28 1.4E-32 183.4 13.7 122 3-125 117-274 (278)
4 COG4122 Predicted O-methyltran 100.0 1.2E-27 2.5E-32 176.4 11.8 118 3-125 58-214 (219)
5 PLN02781 Probable caffeoyl-CoA 99.9 3.5E-26 7.5E-31 170.4 12.8 122 3-125 67-229 (234)
6 KOG1663 O-methyltransferase [S 99.9 1E-25 2.2E-30 165.8 12.1 122 3-125 72-233 (237)
7 PF12847 Methyltransf_18: Meth 99.3 4E-11 8.6E-16 78.6 9.0 63 4-74 1-78 (112)
8 COG4123 Predicted O-methyltran 99.3 1.2E-11 2.6E-16 92.9 7.2 108 4-123 44-176 (248)
9 PRK13942 protein-L-isoaspartat 99.2 4.5E-11 9.8E-16 87.8 7.7 73 4-84 76-163 (212)
10 PRK13944 protein-L-isoaspartat 99.2 5.8E-11 1.3E-15 86.7 7.9 70 5-81 73-157 (205)
11 TIGR00080 pimt protein-L-isoas 99.2 7.5E-11 1.6E-15 86.5 7.7 73 4-84 77-164 (215)
12 PF01135 PCMT: Protein-L-isoas 99.2 5.3E-11 1.1E-15 87.6 5.8 73 4-84 72-160 (209)
13 COG2226 UbiE Methylase involve 99.2 2.5E-10 5.5E-15 85.5 8.9 68 4-80 51-133 (238)
14 COG2518 Pcm Protein-L-isoaspar 99.1 1.3E-10 2.7E-15 85.4 6.7 70 4-84 72-156 (209)
15 COG2242 CobL Precorrin-6B meth 99.1 9.3E-10 2E-14 79.4 11.1 73 4-86 34-121 (187)
16 TIGR00138 gidB 16S rRNA methyl 99.1 2.4E-10 5.3E-15 82.2 7.0 70 4-84 42-126 (181)
17 PRK04457 spermidine synthase; 99.1 4.8E-10 1E-14 84.9 8.9 67 4-77 66-147 (262)
18 PLN03075 nicotianamine synthas 99.1 2.5E-10 5.5E-15 87.9 7.4 74 4-84 123-217 (296)
19 PRK00377 cbiT cobalt-precorrin 99.1 6.9E-10 1.5E-14 80.4 9.1 76 4-85 40-130 (198)
20 PF07279 DUF1442: Protein of u 99.1 3.3E-10 7.1E-15 83.3 7.1 115 3-125 40-183 (218)
21 PF13578 Methyltransf_24: Meth 99.1 1E-10 2.2E-15 76.6 3.5 64 9-77 1-80 (106)
22 PF13847 Methyltransf_31: Meth 99.1 7.5E-10 1.6E-14 76.8 7.7 67 3-76 2-83 (152)
23 PRK00107 gidB 16S rRNA methylt 99.0 1.2E-09 2.5E-14 79.2 7.7 69 5-84 46-129 (187)
24 TIGR02469 CbiT precorrin-6Y C5 99.0 1.8E-09 3.9E-14 71.4 7.7 64 5-76 20-98 (124)
25 PF13659 Methyltransf_26: Meth 99.0 5.2E-09 1.1E-13 69.0 9.7 99 6-118 2-116 (117)
26 PF01209 Ubie_methyltran: ubiE 99.0 6.9E-10 1.5E-14 82.9 5.8 70 4-81 47-131 (233)
27 COG4106 Tam Trans-aconitate me 99.0 4E-10 8.7E-15 83.2 4.0 92 4-104 30-146 (257)
28 PRK08287 cobalt-precorrin-6Y C 98.9 4.2E-09 9.1E-14 75.5 8.0 70 4-84 31-115 (187)
29 TIGR00091 tRNA (guanine-N(7)-) 98.9 1.5E-08 3.3E-13 73.3 10.6 65 4-74 16-95 (194)
30 PF05175 MTS: Methyltransferas 98.9 4.4E-09 9.5E-14 74.7 6.9 60 4-73 31-105 (170)
31 PRK13943 protein-L-isoaspartat 98.9 5.7E-09 1.2E-13 81.4 8.0 71 4-82 80-165 (322)
32 TIGR02752 MenG_heptapren 2-hep 98.9 4.6E-09 1E-13 77.2 7.1 68 4-79 45-127 (231)
33 COG2519 GCD14 tRNA(1-methylade 98.9 1.6E-08 3.4E-13 76.1 9.8 65 4-76 94-173 (256)
34 TIGR03533 L3_gln_methyl protei 98.9 6.2E-09 1.4E-13 79.7 7.4 61 4-73 121-196 (284)
35 PRK11036 putative S-adenosyl-L 98.9 1.1E-08 2.4E-13 76.8 8.2 63 4-75 44-121 (255)
36 PRK00121 trmB tRNA (guanine-N( 98.9 1.8E-08 3.9E-13 73.4 8.8 65 4-74 40-119 (202)
37 PF08704 GCD14: tRNA methyltra 98.9 1.1E-08 2.5E-13 77.0 7.7 69 5-78 41-125 (247)
38 PRK00312 pcm protein-L-isoaspa 98.8 9.8E-09 2.1E-13 74.9 7.0 70 4-84 78-162 (212)
39 COG2890 HemK Methylase of poly 98.8 4.3E-09 9.2E-14 80.6 5.1 63 7-86 113-190 (280)
40 PRK01544 bifunctional N5-gluta 98.8 6.6E-09 1.4E-13 85.3 6.3 60 5-73 139-213 (506)
41 PLN02233 ubiquinone biosynthes 98.8 2.9E-08 6.4E-13 75.0 9.4 68 4-78 73-157 (261)
42 PRK11188 rrmJ 23S rRNA methylt 98.8 1.9E-08 4E-13 73.9 8.0 71 4-76 51-127 (209)
43 PRK11805 N5-glutamine S-adenos 98.8 1.5E-08 3.2E-13 78.5 7.3 59 6-73 135-208 (307)
44 TIGR00536 hemK_fam HemK family 98.8 1.2E-08 2.6E-13 77.9 6.3 59 6-73 116-189 (284)
45 PRK00811 spermidine synthase; 98.8 3.7E-08 8E-13 75.4 8.9 67 3-76 75-160 (283)
46 PRK01683 trans-aconitate 2-met 98.8 1.8E-08 3.9E-13 75.4 6.3 65 4-77 31-104 (258)
47 PRK07402 precorrin-6B methylas 98.8 5.6E-08 1.2E-12 70.2 8.6 72 4-84 40-126 (196)
48 PRK14103 trans-aconitate 2-met 98.8 1.1E-08 2.3E-13 76.7 5.0 64 4-76 29-99 (255)
49 TIGR03587 Pse_Me-ase pseudamin 98.8 1.6E-08 3.4E-13 74.0 5.6 64 4-76 43-115 (204)
50 PLN02244 tocopherol O-methyltr 98.7 2E-08 4.3E-13 78.6 6.3 64 4-76 118-196 (340)
51 PRK14902 16S rRNA methyltransf 98.7 4.2E-08 9.1E-13 79.2 7.3 65 4-75 250-329 (444)
52 PRK15128 23S rRNA m(5)C1962 me 98.7 8.7E-08 1.9E-12 76.6 8.9 67 4-75 220-302 (396)
53 PLN02396 hexaprenyldihydroxybe 98.7 1.6E-07 3.4E-12 73.3 10.1 60 5-74 132-206 (322)
54 PRK14903 16S rRNA methyltransf 98.7 8.4E-08 1.8E-12 77.4 8.5 65 4-75 237-316 (431)
55 PTZ00146 fibrillarin; Provisio 98.7 7.7E-08 1.7E-12 74.1 7.7 71 5-79 133-215 (293)
56 PF13649 Methyltransf_25: Meth 98.7 9.5E-08 2.1E-12 61.9 6.8 58 8-72 1-73 (101)
57 PRK14904 16S rRNA methyltransf 98.7 6.2E-08 1.3E-12 78.3 7.1 61 5-74 251-326 (445)
58 PRK15001 SAM-dependent 23S rib 98.7 1.2E-07 2.5E-12 75.5 8.4 59 6-73 230-305 (378)
59 PRK10909 rsmD 16S rRNA m(2)G96 98.7 1.5E-07 3.1E-12 68.9 8.3 63 4-75 53-130 (199)
60 PRK03522 rumB 23S rRNA methylu 98.7 1.2E-07 2.6E-12 73.5 8.2 63 4-76 173-250 (315)
61 TIGR03534 RF_mod_PrmC protein- 98.7 1E-07 2.2E-12 70.5 7.3 60 4-73 87-161 (251)
62 PLN02366 spermidine synthase 98.6 2.2E-07 4.7E-12 72.1 9.2 69 3-77 90-176 (308)
63 PRK14121 tRNA (guanine-N(7)-)- 98.6 1.5E-07 3.3E-12 75.0 8.2 63 5-74 123-200 (390)
64 TIGR00446 nop2p NOL1/NOP2/sun 98.6 1.6E-07 3.5E-12 71.1 8.1 63 5-75 72-149 (264)
65 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1.3E-07 2.7E-12 80.4 8.3 64 4-75 538-617 (702)
66 TIGR02072 BioC biotin biosynth 98.6 7.2E-08 1.6E-12 70.3 5.9 65 4-76 34-108 (240)
67 PRK01581 speE spermidine synth 98.6 2.6E-07 5.5E-12 73.2 9.0 67 3-76 149-236 (374)
68 PRK04266 fibrillarin; Provisio 98.6 1.3E-07 2.8E-12 70.3 6.8 66 4-76 72-151 (226)
69 COG2230 Cfa Cyclopropane fatty 98.6 1.7E-07 3.6E-12 71.8 7.4 69 4-84 72-160 (283)
70 KOG2904 Predicted methyltransf 98.6 5.4E-08 1.2E-12 74.2 4.5 69 3-84 147-234 (328)
71 smart00828 PKS_MT Methyltransf 98.6 1E-07 2.2E-12 69.8 5.8 59 6-73 1-74 (224)
72 PF02353 CMAS: Mycolic acid cy 98.6 1.6E-07 3.5E-12 71.7 7.1 69 4-84 62-150 (273)
73 PRK11873 arsM arsenite S-adeno 98.6 7.4E-07 1.6E-11 67.3 10.5 64 4-75 77-155 (272)
74 PRK06922 hypothetical protein; 98.6 4.3E-07 9.4E-12 76.4 9.5 64 4-74 418-495 (677)
75 PRK14966 unknown domain/N5-glu 98.6 1.1E-07 2.4E-12 76.4 5.6 62 5-73 252-326 (423)
76 PRK11207 tellurite resistance 98.6 2E-07 4.4E-12 67.6 6.5 60 4-75 30-104 (197)
77 PRK14901 16S rRNA methyltransf 98.6 2.3E-07 4.9E-12 74.8 7.2 67 5-75 253-334 (434)
78 PRK15451 tRNA cmo(5)U34 methyl 98.6 3.1E-07 6.7E-12 68.7 7.5 62 4-74 56-133 (247)
79 PRK11727 23S rRNA mA1618 methy 98.6 2.8E-07 6.1E-12 71.9 7.4 70 5-84 115-201 (321)
80 PLN02672 methionine S-methyltr 98.5 1.8E-07 3.9E-12 82.4 7.0 67 5-84 119-215 (1082)
81 PRK15068 tRNA mo(5)U34 methylt 98.5 9.7E-07 2.1E-11 68.8 10.4 61 4-74 122-197 (322)
82 PHA03412 putative methyltransf 98.5 3.7E-07 7.9E-12 68.5 7.6 68 5-86 50-128 (241)
83 PRK09328 N5-glutamine S-adenos 98.5 2.9E-07 6.3E-12 69.2 6.8 61 4-73 108-182 (275)
84 smart00650 rADc Ribosomal RNA 98.5 5.2E-07 1.1E-11 63.7 7.6 61 5-75 14-86 (169)
85 PF08241 Methyltransf_11: Meth 98.5 2.8E-07 6.2E-12 57.7 5.3 58 9-75 1-69 (95)
86 PRK07580 Mg-protoporphyrin IX 98.5 5.2E-07 1.1E-11 66.0 7.2 59 4-75 63-136 (230)
87 PRK06202 hypothetical protein; 98.5 2E-07 4.3E-12 68.9 5.0 69 4-79 60-142 (232)
88 TIGR02021 BchM-ChlM magnesium 98.5 6.1E-07 1.3E-11 65.7 7.5 57 4-73 55-126 (219)
89 TIGR00479 rumA 23S rRNA (uraci 98.5 1.3E-06 2.8E-11 70.3 10.0 73 5-84 293-381 (431)
90 PRK10901 16S rRNA methyltransf 98.5 3.7E-07 8E-12 73.5 6.9 66 4-75 244-322 (427)
91 TIGR00477 tehB tellurite resis 98.5 4E-07 8.6E-12 66.0 6.4 59 4-75 30-103 (195)
92 PRK05785 hypothetical protein; 98.5 1.3E-07 2.9E-12 70.1 3.9 64 4-76 51-120 (226)
93 TIGR00438 rrmJ cell division p 98.5 7.2E-07 1.6E-11 64.0 7.6 71 4-75 32-107 (188)
94 PRK08317 hypothetical protein; 98.5 4.4E-07 9.6E-12 66.0 6.6 65 4-75 19-96 (241)
95 PRK00216 ubiE ubiquinone/menaq 98.5 4.4E-07 9.6E-12 66.3 6.6 65 5-76 52-131 (239)
96 PF07021 MetW: Methionine bios 98.5 1.3E-06 2.8E-11 63.6 8.8 64 4-74 13-83 (193)
97 TIGR00417 speE spermidine synt 98.5 1.1E-06 2.4E-11 66.7 8.8 67 3-76 71-155 (270)
98 TIGR00740 methyltransferase, p 98.5 8E-07 1.7E-11 65.9 7.9 63 4-75 53-131 (239)
99 TIGR00563 rsmB ribosomal RNA s 98.5 3.9E-07 8.5E-12 73.3 6.6 65 4-74 238-317 (426)
100 PRK11088 rrmA 23S rRNA methylt 98.5 3.7E-07 8E-12 69.2 6.1 74 4-84 85-169 (272)
101 PF09445 Methyltransf_15: RNA 98.5 4.1E-07 8.9E-12 64.7 5.9 62 6-74 1-77 (163)
102 PF02390 Methyltransf_4: Putat 98.5 1E-06 2.2E-11 64.1 8.0 61 7-73 20-95 (195)
103 TIGR03704 PrmC_rel_meth putati 98.5 7.1E-07 1.5E-11 67.2 7.2 63 5-73 87-160 (251)
104 PRK13168 rumA 23S rRNA m(5)U19 98.4 1E-06 2.2E-11 71.2 8.1 72 5-83 298-384 (443)
105 COG2521 Predicted archaeal met 98.4 4.8E-06 1E-10 62.5 10.7 63 4-74 134-213 (287)
106 TIGR00095 RNA methyltransferas 98.4 1.9E-06 4.1E-11 62.4 8.5 68 4-76 49-131 (189)
107 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 8.7E-07 1.9E-11 64.1 6.7 65 4-75 39-115 (223)
108 PLN02336 phosphoethanolamine N 98.4 6E-07 1.3E-11 72.8 6.3 64 4-76 266-342 (475)
109 TIGR02716 C20_methyl_CrtF C-20 98.4 1E-06 2.2E-11 67.8 7.2 62 4-75 149-224 (306)
110 TIGR00537 hemK_rel_arch HemK-r 98.4 6E-07 1.3E-11 63.9 5.6 59 4-74 19-90 (179)
111 PRK12335 tellurite resistance 98.4 7.6E-07 1.6E-11 68.1 6.5 58 4-74 120-192 (287)
112 PRK14967 putative methyltransf 98.4 8.8E-07 1.9E-11 65.2 6.5 60 5-74 37-109 (223)
113 PLN02823 spermine synthase 98.4 2E-06 4.4E-11 67.5 8.8 67 3-76 102-186 (336)
114 PTZ00098 phosphoethanolamine N 98.4 9.1E-07 2E-11 67.0 6.5 61 4-73 52-124 (263)
115 COG2227 UbiG 2-polyprenyl-3-me 98.4 7E-07 1.5E-11 66.9 5.7 59 4-72 59-130 (243)
116 TIGR00406 prmA ribosomal prote 98.4 1.3E-06 2.8E-11 67.0 7.2 70 4-84 159-243 (288)
117 COG0220 Predicted S-adenosylme 98.3 8E-06 1.7E-10 60.9 10.5 62 6-73 50-126 (227)
118 PRK03612 spermidine synthase; 98.3 3.2E-06 7E-11 69.7 9.2 67 3-76 296-383 (521)
119 TIGR02085 meth_trns_rumB 23S r 98.3 2.3E-06 5.1E-11 67.8 8.0 62 4-75 233-309 (374)
120 TIGR00452 methyltransferase, p 98.3 6.2E-06 1.3E-10 64.2 10.2 62 4-75 121-197 (314)
121 PHA03411 putative methyltransf 98.3 1.6E-06 3.4E-11 66.4 6.4 59 5-73 65-133 (279)
122 KOG2915 tRNA(1-methyladenosine 98.3 3.8E-06 8.2E-11 64.1 8.2 68 5-77 106-188 (314)
123 PRK14968 putative methyltransf 98.3 2.4E-06 5.1E-11 60.4 6.7 60 4-74 23-98 (188)
124 PLN02490 MPBQ/MSBQ methyltrans 98.3 1.8E-06 3.9E-11 67.9 6.4 63 5-75 114-187 (340)
125 PRK10258 biotin biosynthesis p 98.3 1.1E-06 2.4E-11 65.5 5.0 63 4-76 42-113 (251)
126 TIGR03840 TMPT_Se_Te thiopurin 98.3 1.5E-06 3.3E-11 64.0 5.5 61 4-73 34-120 (213)
127 PRK13255 thiopurine S-methyltr 98.3 2.3E-06 5.1E-11 63.3 5.8 59 5-72 38-122 (218)
128 KOG1661 Protein-L-isoaspartate 98.2 1.6E-06 3.4E-11 64.0 4.6 74 4-84 82-181 (237)
129 PF03848 TehB: Tellurite resis 98.2 3.8E-06 8.3E-11 61.2 6.6 57 4-73 30-101 (192)
130 PF05401 NodS: Nodulation prot 98.2 3.1E-06 6.7E-11 61.8 5.9 57 5-73 44-113 (201)
131 PRK09489 rsmC 16S ribosomal RN 98.2 2.2E-06 4.8E-11 67.3 5.6 58 5-74 197-269 (342)
132 cd02440 AdoMet_MTases S-adenos 98.2 6.5E-06 1.4E-10 51.1 6.7 62 7-76 1-76 (107)
133 TIGR02081 metW methionine bios 98.2 1.5E-06 3.3E-11 62.6 4.2 65 4-75 13-84 (194)
134 PTZ00338 dimethyladenosine tra 98.2 5.7E-06 1.2E-10 63.8 7.7 58 4-73 36-108 (294)
135 PRK00050 16S rRNA m(4)C1402 me 98.2 9.8E-06 2.1E-10 62.6 8.9 72 5-79 20-103 (296)
136 PRK05031 tRNA (uracil-5-)-meth 98.2 6.5E-06 1.4E-10 65.1 8.1 67 6-76 208-298 (362)
137 PLN02585 magnesium protoporphy 98.2 3.7E-06 8E-11 65.5 6.6 59 4-75 144-221 (315)
138 PF04989 CmcI: Cephalosporin h 98.2 5.2E-06 1.1E-10 61.1 6.9 74 3-77 31-122 (206)
139 PF06325 PrmA: Ribosomal prote 98.2 3.9E-06 8.4E-11 64.8 5.8 59 3-74 160-233 (295)
140 COG2813 RsmC 16S RNA G1207 met 98.2 3.4E-06 7.4E-11 65.1 5.4 57 6-73 160-231 (300)
141 PRK14896 ksgA 16S ribosomal RN 98.2 7.5E-06 1.6E-10 61.8 6.9 58 4-73 29-98 (258)
142 PF08242 Methyltransf_12: Meth 98.1 4.9E-07 1.1E-11 58.1 0.3 27 9-36 1-27 (99)
143 COG1092 Predicted SAM-dependen 98.1 9.5E-06 2.1E-10 64.9 7.6 64 5-74 218-298 (393)
144 PLN02336 phosphoethanolamine N 98.1 4.7E-06 1E-10 67.6 6.0 62 5-75 38-112 (475)
145 COG2264 PrmA Ribosomal protein 98.1 5.2E-06 1.1E-10 64.2 5.6 32 3-36 161-192 (300)
146 COG0421 SpeE Spermidine syntha 98.1 1.7E-05 3.7E-10 60.9 8.4 67 4-77 76-160 (282)
147 KOG1270 Methyltransferases [Co 98.1 3.4E-06 7.5E-11 64.0 4.3 55 6-73 91-165 (282)
148 PF08003 Methyltransf_9: Prote 98.1 7E-06 1.5E-10 63.6 6.0 63 3-75 114-191 (315)
149 PF03602 Cons_hypoth95: Conser 98.1 1.7E-05 3.8E-10 57.2 7.6 67 4-75 42-123 (183)
150 TIGR02143 trmA_only tRNA (urac 98.1 1.6E-05 3.5E-10 62.7 8.0 76 5-84 198-298 (353)
151 PRK00517 prmA ribosomal protei 98.1 1E-05 2.2E-10 60.7 6.5 31 4-36 119-149 (250)
152 KOG1540 Ubiquinone biosynthesi 98.1 2.6E-05 5.7E-10 59.2 8.6 70 5-81 101-192 (296)
153 PF10294 Methyltransf_16: Puta 98.1 1.3E-05 2.9E-10 57.1 6.6 66 3-73 44-126 (173)
154 PRK11705 cyclopropane fatty ac 98.1 1.6E-05 3.5E-10 63.3 7.6 58 4-73 167-235 (383)
155 PRK05134 bifunctional 3-demeth 98.1 1.9E-05 4.1E-10 58.1 7.3 62 4-74 48-122 (233)
156 PF13489 Methyltransf_23: Meth 98.1 2E-05 4.3E-10 54.0 6.8 67 3-79 21-91 (161)
157 PF10672 Methyltrans_SAM: S-ad 98.0 4.3E-05 9.4E-10 58.8 9.3 66 4-75 123-204 (286)
158 smart00138 MeTrc Methyltransfe 98.0 1.2E-05 2.6E-10 61.0 6.2 87 4-108 99-234 (264)
159 TIGR01983 UbiG ubiquinone bios 98.0 1.8E-05 3.9E-10 57.7 6.8 62 4-74 45-120 (224)
160 KOG1499 Protein arginine N-met 98.0 1.1E-05 2.3E-10 63.3 5.4 62 3-73 59-134 (346)
161 PRK11933 yebU rRNA (cytosine-C 98.0 2.9E-05 6.2E-10 63.5 7.9 65 4-75 113-192 (470)
162 TIGR03438 probable methyltrans 98.0 3.6E-05 7.7E-10 59.3 7.6 74 4-79 63-151 (301)
163 PRK11760 putative 23S rRNA C24 98.0 2.3E-05 4.9E-10 61.7 6.3 63 4-76 211-280 (357)
164 PRK00274 ksgA 16S ribosomal RN 97.9 2.3E-05 5.1E-10 59.6 6.0 47 4-53 42-99 (272)
165 TIGR01177 conserved hypothetic 97.9 6.6E-05 1.4E-09 58.5 8.6 58 5-73 183-255 (329)
166 COG0293 FtsJ 23S rRNA methylas 97.9 5.2E-05 1.1E-09 55.7 7.4 71 4-76 45-121 (205)
167 PF00891 Methyltransf_2: O-met 97.9 2.7E-05 5.9E-10 57.7 6.0 65 4-79 100-171 (241)
168 TIGR00755 ksgA dimethyladenosi 97.9 3.4E-05 7.3E-10 57.9 6.3 47 4-53 29-87 (253)
169 PF01564 Spermine_synth: Sperm 97.9 6.9E-05 1.5E-09 56.4 7.6 67 4-77 76-161 (246)
170 PF01728 FtsJ: FtsJ-like methy 97.9 2.8E-05 6E-10 55.3 4.9 73 4-76 23-101 (181)
171 PF05185 PRMT5: PRMT5 arginine 97.8 5.5E-05 1.2E-09 61.5 6.9 61 5-73 187-265 (448)
172 COG2263 Predicted RNA methylas 97.8 7.1E-05 1.5E-09 54.4 6.5 101 4-116 45-165 (198)
173 KOG3191 Predicted N6-DNA-methy 97.8 5.9E-05 1.3E-09 54.7 5.9 61 4-72 43-116 (209)
174 PRK04338 N(2),N(2)-dimethylgua 97.8 8.5E-05 1.8E-09 59.3 7.4 61 6-75 59-134 (382)
175 PRK01544 bifunctional N5-gluta 97.8 0.00021 4.7E-09 58.9 9.9 62 5-73 348-424 (506)
176 COG0030 KsgA Dimethyladenosine 97.8 8E-05 1.7E-09 56.6 6.4 58 5-72 31-101 (259)
177 PF02527 GidB: rRNA small subu 97.7 0.00013 2.7E-09 52.9 6.4 60 7-76 51-125 (184)
178 COG0742 N6-adenine-specific me 97.7 0.00027 5.9E-09 51.3 7.9 68 3-76 42-124 (187)
179 PF02475 Met_10: Met-10+ like- 97.7 0.00019 4.2E-09 52.6 6.8 64 4-76 101-179 (200)
180 PRK10742 putative methyltransf 97.6 0.00024 5.2E-09 53.7 7.1 59 7-74 91-172 (250)
181 TIGR00308 TRM1 tRNA(guanine-26 97.6 0.00062 1.3E-08 54.3 9.0 71 6-84 46-131 (374)
182 PF05724 TPMT: Thiopurine S-me 97.5 6.9E-05 1.5E-09 55.5 3.0 60 4-72 37-122 (218)
183 COG0357 GidB Predicted S-adeno 97.5 0.00021 4.6E-09 52.9 5.5 62 5-76 68-145 (215)
184 KOG1500 Protein arginine N-met 97.5 0.00025 5.4E-09 56.1 6.0 60 4-73 177-250 (517)
185 KOG2730 Methylase [General fun 97.5 0.00026 5.7E-09 52.8 5.8 65 4-74 94-173 (263)
186 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.5 0.001 2.3E-08 51.0 9.3 66 4-75 85-165 (283)
187 PRK04148 hypothetical protein; 97.5 0.00012 2.6E-09 50.5 3.6 60 4-72 16-83 (134)
188 COG3963 Phospholipid N-methylt 97.5 0.0005 1.1E-08 49.4 6.7 74 4-79 48-130 (194)
189 KOG4300 Predicted methyltransf 97.5 0.00017 3.6E-09 53.5 4.2 61 5-73 77-152 (252)
190 PRK13256 thiopurine S-methyltr 97.4 0.0003 6.6E-09 52.5 5.3 64 5-75 44-133 (226)
191 PF04816 DUF633: Family of unk 97.4 0.0004 8.7E-09 51.1 5.9 59 8-74 1-74 (205)
192 KOG1271 Methyltransferases [Ge 97.4 0.00021 4.4E-09 52.1 3.9 60 4-71 67-141 (227)
193 TIGR00478 tly hemolysin TlyA f 97.3 0.00032 7E-09 52.3 4.6 31 4-36 75-105 (228)
194 KOG1541 Predicted protein carb 97.3 6.2E-05 1.3E-09 56.2 0.4 60 4-72 50-118 (270)
195 KOG0820 Ribosomal RNA adenine 97.3 0.0009 1.9E-08 51.4 6.5 58 4-73 58-130 (315)
196 PF05958 tRNA_U5-meth_tr: tRNA 97.2 0.00066 1.4E-08 53.6 5.2 68 5-76 197-288 (352)
197 TIGR01444 fkbM_fam methyltrans 97.1 0.00067 1.5E-08 46.0 4.1 28 8-36 2-29 (143)
198 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0008 1.7E-08 50.8 4.9 47 4-53 30-88 (262)
199 KOG2899 Predicted methyltransf 97.1 0.0018 3.9E-08 49.1 6.5 33 3-36 57-89 (288)
200 KOG4589 Cell division protein 97.0 0.0056 1.2E-07 44.9 7.8 67 4-76 69-146 (232)
201 KOG2187 tRNA uracil-5-methyltr 97.0 0.001 2.2E-08 54.7 4.3 64 6-75 385-464 (534)
202 PF13679 Methyltransf_32: Meth 96.9 0.0019 4.2E-08 44.3 4.7 34 3-36 24-60 (141)
203 COG2265 TrmA SAM-dependent met 96.8 0.0047 1E-07 50.2 7.1 67 4-78 293-374 (432)
204 PF03059 NAS: Nicotianamine sy 96.8 0.002 4.2E-08 49.5 4.7 67 4-77 120-203 (276)
205 KOG3420 Predicted RNA methylas 96.7 0.0012 2.6E-08 46.5 2.5 62 4-74 48-122 (185)
206 KOG3010 Methyltransferase [Gen 96.6 0.0036 7.8E-08 47.3 4.6 29 5-36 34-62 (261)
207 PRK01747 mnmC bifunctional tRN 96.6 0.009 1.9E-07 50.6 7.3 74 5-84 58-185 (662)
208 TIGR00006 S-adenosyl-methyltra 96.6 0.024 5.1E-07 44.2 9.0 71 5-78 21-104 (305)
209 COG4262 Predicted spermidine s 96.5 0.024 5.3E-07 45.5 8.7 70 3-79 288-378 (508)
210 PF05711 TylF: Macrocin-O-meth 96.5 0.022 4.9E-07 43.1 8.0 96 4-106 74-229 (248)
211 KOG1709 Guanidinoacetate methy 96.4 0.014 3.1E-07 43.7 6.6 76 2-84 99-187 (271)
212 COG4976 Predicted methyltransf 96.4 0.00051 1.1E-08 51.7 -1.2 60 5-72 126-194 (287)
213 PF01170 UPF0020: Putative RNA 96.4 0.0097 2.1E-07 42.6 5.5 62 5-73 29-113 (179)
214 COG2384 Predicted SAM-dependen 96.4 0.0094 2E-07 44.4 5.4 73 4-84 16-104 (226)
215 COG1352 CheR Methylase of chem 96.4 0.0073 1.6E-07 46.2 4.9 88 4-109 96-234 (268)
216 COG0144 Sun tRNA and rRNA cyto 96.3 0.014 3E-07 46.3 6.4 66 5-75 157-238 (355)
217 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.027 5.9E-07 48.3 8.4 99 5-117 191-346 (702)
218 COG1189 Predicted rRNA methyla 96.2 0.022 4.7E-07 42.9 6.8 70 3-79 78-157 (245)
219 PF04445 SAM_MT: Putative SAM- 96.2 0.0015 3.3E-08 49.0 0.6 58 7-73 78-158 (234)
220 PHA01634 hypothetical protein 95.9 0.011 2.4E-07 40.8 3.7 31 4-36 28-58 (156)
221 COG4076 Predicted RNA methylas 95.9 0.011 2.4E-07 43.5 3.8 54 6-72 34-102 (252)
222 KOG1099 SAM-dependent methyltr 95.9 0.014 3E-07 44.1 4.3 75 4-84 41-138 (294)
223 PF06080 DUF938: Protein of un 95.9 0.013 2.7E-07 43.2 3.9 29 7-36 28-56 (204)
224 PF05971 Methyltransf_10: Prot 95.8 0.014 3E-07 45.4 4.2 69 6-84 104-189 (299)
225 COG2520 Predicted methyltransf 95.8 0.043 9.3E-07 43.4 7.0 64 4-76 188-266 (341)
226 PF05219 DREV: DREV methyltran 95.7 0.062 1.3E-06 41.0 7.2 30 4-36 94-123 (265)
227 PF09243 Rsm22: Mitochondrial 95.6 0.016 3.4E-07 44.3 3.9 34 3-36 32-65 (274)
228 KOG1098 Putative SAM-dependent 95.6 0.031 6.7E-07 47.4 5.8 76 4-84 44-128 (780)
229 PRK00536 speE spermidine synth 95.6 0.06 1.3E-06 41.1 6.9 60 3-75 71-148 (262)
230 COG3510 CmcI Cephalosporin hyd 95.5 0.055 1.2E-06 39.9 6.1 73 2-78 67-156 (237)
231 PF01269 Fibrillarin: Fibrilla 95.5 0.044 9.5E-07 41.0 5.6 76 5-84 74-161 (229)
232 KOG3115 Methyltransferase-like 95.4 0.013 2.8E-07 43.5 2.6 51 6-57 62-133 (249)
233 KOG1501 Arginine N-methyltrans 95.3 0.033 7.2E-07 45.7 4.8 45 6-52 68-127 (636)
234 PF12147 Methyltransf_20: Puta 94.9 0.12 2.6E-06 40.2 6.6 73 4-80 135-223 (311)
235 PF01739 CheR: CheR methyltran 94.7 0.019 4.1E-07 41.9 1.8 70 4-84 31-150 (196)
236 KOG2793 Putative N2,N2-dimethy 94.6 0.074 1.6E-06 40.3 4.8 31 4-36 86-116 (248)
237 TIGR02987 met_A_Alw26 type II 94.4 0.045 9.8E-07 45.2 3.7 32 5-36 32-70 (524)
238 COG3897 Predicted methyltransf 94.3 0.041 8.8E-07 40.6 2.7 58 4-73 79-149 (218)
239 KOG1122 tRNA and rRNA cytosine 94.2 0.067 1.4E-06 43.5 4.0 65 5-75 242-321 (460)
240 PF08123 DOT1: Histone methyla 94.2 0.16 3.4E-06 37.4 5.7 63 6-75 44-131 (205)
241 PF02384 N6_Mtase: N-6 DNA Met 94.1 0.039 8.4E-07 42.3 2.5 64 5-73 47-132 (311)
242 PF01795 Methyltransf_5: MraW 94.1 0.38 8.3E-06 37.6 7.8 73 5-79 21-106 (310)
243 COG1889 NOP1 Fibrillarin-like 93.9 0.28 6.1E-06 36.4 6.4 76 4-86 76-165 (231)
244 PF03141 Methyltransf_29: Puta 93.8 0.033 7.2E-07 46.0 1.6 62 6-76 119-191 (506)
245 KOG2361 Predicted methyltransf 93.5 0.035 7.5E-07 42.1 1.2 32 5-36 72-104 (264)
246 PF03291 Pox_MCEL: mRNA cappin 93.4 0.31 6.6E-06 38.4 6.4 65 4-73 62-152 (331)
247 COG0275 Predicted S-adenosylme 92.9 1.5 3.2E-05 34.4 9.3 72 6-79 25-109 (314)
248 KOG1562 Spermidine synthase [A 92.7 0.67 1.5E-05 36.3 7.2 109 4-119 121-269 (337)
249 PF05891 Methyltransf_PK: AdoM 92.2 0.52 1.1E-05 35.1 5.8 63 4-75 55-131 (218)
250 PF07091 FmrO: Ribosomal RNA m 92.1 0.25 5.4E-06 37.5 4.0 60 4-72 105-177 (251)
251 PF05430 Methyltransf_30: S-ad 91.7 0.28 6E-06 33.3 3.7 38 41-84 31-69 (124)
252 COG0116 Predicted N6-adenine-s 90.6 0.43 9.4E-06 38.3 4.3 60 6-72 193-305 (381)
253 COG0500 SmtA SAM-dependent met 89.8 0.62 1.4E-05 29.3 3.9 58 8-72 52-125 (257)
254 PF12692 Methyltransf_17: S-ad 89.6 1.7 3.7E-05 30.7 6.1 68 5-76 29-103 (160)
255 PF02005 TRM: N2,N2-dimethylgu 89.5 1.4 3E-05 35.4 6.3 73 5-84 50-138 (377)
256 PF12242 Eno-Rase_NADH_b: NAD( 88.6 1.1 2.3E-05 28.1 4.0 33 3-35 37-70 (78)
257 PF05206 TRM13: Methyltransfer 87.6 1.1 2.5E-05 34.0 4.5 33 4-36 18-54 (259)
258 KOG3201 Uncharacterized conser 87.5 0.16 3.5E-06 36.6 -0.2 32 4-36 29-61 (201)
259 PRK10611 chemotaxis methyltran 87.2 0.58 1.2E-05 36.2 2.8 32 5-36 116-154 (287)
260 KOG1596 Fibrillarin and relate 86.2 1.1 2.4E-05 34.3 3.7 73 4-80 156-240 (317)
261 PF07942 N2227: N2227-like pro 85.6 1.9 4.1E-05 33.1 4.8 30 4-36 56-85 (270)
262 KOG1975 mRNA cap methyltransfe 84.3 2.9 6.2E-05 33.4 5.3 70 2-75 115-205 (389)
263 PF05148 Methyltransf_8: Hypot 84.0 3.5 7.6E-05 30.7 5.4 95 6-115 74-181 (219)
264 KOG2651 rRNA adenine N-6-methy 83.3 1.8 3.8E-05 35.2 3.8 31 4-36 153-183 (476)
265 TIGR03439 methyl_EasF probable 83.2 9.9 0.00021 29.8 8.0 76 5-80 77-171 (319)
266 PLN02668 indole-3-acetate carb 82.5 0.86 1.9E-05 36.7 1.9 21 4-24 63-83 (386)
267 PF05050 Methyltransf_21: Meth 81.7 2.3 5.1E-05 28.7 3.6 27 10-36 1-30 (167)
268 KOG2912 Predicted DNA methylas 81.5 4.2 9.1E-05 32.4 5.3 68 8-84 106-190 (419)
269 PF06460 NSP13: Coronavirus NS 81.2 4 8.7E-05 31.5 4.9 62 6-75 63-130 (299)
270 KOG2352 Predicted spermine/spe 81.1 1.7 3.6E-05 36.0 3.1 72 5-77 296-381 (482)
271 PF07015 VirC1: VirC1 protein; 80.8 5.5 0.00012 30.0 5.5 62 14-76 12-93 (231)
272 KOG2940 Predicted methyltransf 80.3 2.1 4.5E-05 32.7 3.1 71 5-84 73-158 (325)
273 PF02636 Methyltransf_28: Puta 79.5 2.8 6.1E-05 31.3 3.7 32 5-36 19-57 (252)
274 COG1041 Predicted DNA modifica 78.7 4.5 9.8E-05 32.2 4.7 60 4-74 197-272 (347)
275 COG1064 AdhP Zn-dependent alco 77.6 5.2 0.00011 31.8 4.7 71 5-84 167-247 (339)
276 PRK13699 putative methylase; P 77.6 2.5 5.4E-05 31.4 2.8 26 43-73 2-27 (227)
277 KOG2198 tRNA cytosine-5-methyl 77.1 5.1 0.00011 32.2 4.6 32 5-36 156-190 (375)
278 PF01861 DUF43: Protein of unk 77.0 8.6 0.00019 29.2 5.5 62 4-74 44-120 (243)
279 KOG1253 tRNA methyltransferase 76.8 1 2.2E-05 37.5 0.6 69 4-75 109-192 (525)
280 PLN02427 UDP-apiose/xylose syn 76.6 11 0.00023 29.6 6.4 66 3-75 12-95 (386)
281 COG4798 Predicted methyltransf 76.3 4 8.7E-05 30.4 3.5 32 5-36 49-80 (238)
282 KOG2920 Predicted methyltransf 75.6 2.4 5.2E-05 32.8 2.4 34 1-36 113-146 (282)
283 PF00107 ADH_zinc_N: Zinc-bind 75.5 6 0.00013 25.7 4.1 56 14-75 1-67 (130)
284 COG2933 Predicted SAM-dependen 75.3 3.2 6.9E-05 32.3 2.9 61 6-76 213-280 (358)
285 PLN02989 cinnamyl-alcohol dehy 75.0 20 0.00044 27.1 7.4 68 1-75 1-86 (325)
286 cd00315 Cyt_C5_DNA_methylase C 74.2 32 0.0007 26.0 8.2 58 7-73 2-69 (275)
287 PF07757 AdoMet_MTase: Predict 74.2 3.5 7.7E-05 27.5 2.6 30 4-36 58-87 (112)
288 KOG0024 Sorbitol dehydrogenase 73.7 17 0.00037 29.0 6.6 32 4-36 169-201 (354)
289 KOG1209 1-Acyl dihydroxyaceton 72.6 25 0.00054 26.8 7.0 80 3-84 5-99 (289)
290 PRK11524 putative methyltransf 72.6 4.4 9.6E-05 30.9 3.2 30 41-75 7-36 (284)
291 PF02254 TrkA_N: TrkA-N domain 71.6 7.8 0.00017 24.8 3.8 58 13-75 4-71 (116)
292 PRK08264 short chain dehydroge 71.4 22 0.00048 25.4 6.6 72 1-76 2-83 (238)
293 PF04672 Methyltransf_19: S-ad 70.8 9.3 0.0002 29.4 4.5 50 4-53 68-133 (267)
294 KOG1331 Predicted methyltransf 70.5 9.1 0.0002 29.8 4.4 86 6-113 47-140 (293)
295 PF11968 DUF3321: Putative met 70.5 2.3 5E-05 31.7 1.1 56 6-72 53-110 (219)
296 PRK06179 short chain dehydroge 70.2 40 0.00086 24.6 7.9 72 4-76 3-83 (270)
297 PF03492 Methyltransf_7: SAM d 70.0 3.1 6.8E-05 32.7 1.9 21 4-24 16-36 (334)
298 PRK15181 Vi polysaccharide bio 69.6 35 0.00076 26.4 7.7 66 4-76 14-100 (348)
299 PLN02695 GDP-D-mannose-3',5'-e 69.1 20 0.00043 28.2 6.3 69 1-74 17-93 (370)
300 KOG1371 UDP-glucose 4-epimeras 68.6 14 0.00029 29.4 5.1 63 5-72 2-83 (343)
301 KOG2360 Proliferation-associat 67.9 3.2 7E-05 33.6 1.5 64 5-74 214-292 (413)
302 PLN00016 RNA-binding protein; 67.3 21 0.00045 28.0 6.1 66 4-74 51-138 (378)
303 cd01488 Uba3_RUB Ubiquitin act 67.1 25 0.00055 27.2 6.3 29 7-36 1-30 (291)
304 PRK06172 short chain dehydroge 66.4 46 0.001 24.0 7.7 71 2-76 4-94 (253)
305 COG1063 Tdh Threonine dehydrog 66.1 32 0.0007 26.9 6.9 30 6-36 170-200 (350)
306 KOG3045 Predicted RNA methylas 65.2 10 0.00022 29.5 3.7 53 5-72 181-234 (325)
307 KOG3987 Uncharacterized conser 64.6 4 8.7E-05 30.7 1.4 31 3-36 111-141 (288)
308 TIGR00518 alaDH alanine dehydr 64.6 39 0.00085 26.9 7.1 31 4-36 166-197 (370)
309 PLN02662 cinnamyl-alcohol dehy 64.1 42 0.00091 25.2 7.0 64 5-75 4-85 (322)
310 PRK00066 ldh L-lactate dehydro 63.2 69 0.0015 24.9 8.7 63 3-76 4-83 (315)
311 KOG1447 GTP-specific succinyl- 61.9 69 0.0015 25.2 7.7 29 95-123 320-348 (412)
312 cd00757 ThiF_MoeB_HesA_family 61.8 52 0.0011 24.1 7.0 32 4-36 20-52 (228)
313 COG3007 Uncharacterized paraqu 61.7 13 0.00028 29.5 3.7 34 2-35 38-72 (398)
314 COG0286 HsdM Type I restrictio 61.4 5.4 0.00012 33.0 1.8 65 6-72 188-270 (489)
315 PF00899 ThiF: ThiF family; I 61.1 28 0.0006 23.1 5.0 31 5-36 2-33 (135)
316 COG1087 GalE UDP-glucose 4-epi 59.9 22 0.00049 28.1 4.8 73 7-84 2-92 (329)
317 COG4121 Uncharacterized conser 59.3 14 0.00029 28.2 3.5 78 4-84 58-187 (252)
318 KOG2352 Predicted spermine/spe 59.3 47 0.001 27.8 6.7 57 7-72 51-120 (482)
319 TIGR02622 CDP_4_6_dhtase CDP-g 59.3 43 0.00094 25.7 6.4 66 5-75 4-84 (349)
320 cd08283 FDH_like_1 Glutathione 59.1 20 0.00044 28.1 4.6 32 4-36 184-216 (386)
321 KOG0821 Predicted ribosomal RN 58.9 16 0.00035 27.9 3.7 45 6-52 52-109 (326)
322 PLN02650 dihydroflavonol-4-red 58.7 50 0.0011 25.3 6.7 68 1-75 1-86 (351)
323 cd00755 YgdL_like Family of ac 58.4 65 0.0014 24.0 7.0 32 4-36 10-42 (231)
324 cd01484 E1-2_like Ubiquitin ac 57.2 57 0.0012 24.4 6.5 29 7-36 1-30 (234)
325 cd08254 hydroxyacyl_CoA_DH 6-h 57.1 52 0.0011 24.6 6.4 30 5-36 166-196 (338)
326 PRK09620 hypothetical protein; 56.6 59 0.0013 24.1 6.5 63 15-81 28-102 (229)
327 KOG3178 Hydroxyindole-O-methyl 56.0 16 0.00034 29.1 3.4 57 5-72 178-242 (342)
328 PF03686 UPF0146: Uncharacteri 55.9 23 0.0005 24.2 3.8 61 4-72 13-76 (127)
329 PRK09880 L-idonate 5-dehydroge 55.6 45 0.00098 25.5 6.0 31 5-36 170-201 (343)
330 PRK07494 2-octaprenyl-6-methox 55.5 23 0.0005 27.6 4.4 35 1-36 3-37 (388)
331 COG1867 TRM1 N2,N2-dimethylgua 55.2 43 0.00094 27.1 5.8 72 5-84 53-138 (380)
332 PLN02240 UDP-glucose 4-epimera 55.1 23 0.00049 27.1 4.2 70 1-75 1-90 (352)
333 PRK11908 NAD-dependent epimera 55.0 52 0.0011 25.2 6.2 59 7-72 3-74 (347)
334 COG1565 Uncharacterized conser 54.8 13 0.00028 29.9 2.8 33 4-36 77-116 (370)
335 PF06962 rRNA_methylase: Putat 54.4 26 0.00057 24.3 4.0 38 31-73 1-53 (140)
336 KOG0822 Protein kinase inhibit 54.3 11 0.00024 32.0 2.4 61 5-72 368-445 (649)
337 PLN02232 ubiquinone biosynthes 54.2 7.6 0.00016 26.9 1.3 31 41-78 26-56 (160)
338 PRK08163 salicylate hydroxylas 53.6 26 0.00056 27.3 4.4 34 1-36 1-34 (396)
339 KOG2811 Uncharacterized conser 53.2 20 0.00044 29.1 3.6 30 6-36 184-216 (420)
340 PRK04663 murD UDP-N-acetylmura 53.1 82 0.0018 25.3 7.3 67 6-82 8-85 (438)
341 PRK14106 murD UDP-N-acetylmura 52.6 45 0.00098 26.7 5.7 70 1-81 1-84 (450)
342 cd05278 FDH_like Formaldehyde 52.4 78 0.0017 23.9 6.8 31 5-36 168-199 (347)
343 PF02844 GARS_N: Phosphoribosy 52.3 61 0.0013 21.1 5.2 62 7-73 2-69 (100)
344 KOG1269 SAM-dependent methyltr 51.8 5.2 0.00011 32.0 0.2 58 6-72 112-184 (364)
345 cd08261 Zn_ADH7 Alcohol dehydr 51.1 78 0.0017 23.9 6.6 31 4-36 159-190 (337)
346 PRK12481 2-deoxy-D-gluconate 3 50.7 86 0.0019 22.8 6.6 70 3-76 6-93 (251)
347 TIGR03451 mycoS_dep_FDH mycoth 50.2 91 0.002 24.0 6.9 31 5-36 177-208 (358)
348 PRK05653 fabG 3-ketoacyl-(acyl 50.0 44 0.00095 23.6 4.8 75 1-76 1-92 (246)
349 COG4963 CpaE Flp pilus assembl 50.0 84 0.0018 25.3 6.7 60 41-108 198-266 (366)
350 PRK03806 murD UDP-N-acetylmura 49.6 84 0.0018 25.2 6.8 31 4-36 5-36 (438)
351 PRK05442 malate dehydrogenase; 49.0 1.3E+02 0.0028 23.6 8.7 35 2-36 1-42 (326)
352 PTZ00357 methyltransferase; Pr 48.8 43 0.00093 29.8 5.1 66 7-72 703-798 (1072)
353 cd08285 NADP_ADH NADP(H)-depen 48.7 1.1E+02 0.0023 23.4 7.0 31 5-36 167-198 (351)
354 COG0569 TrkA K+ transport syst 48.5 69 0.0015 23.5 5.8 63 7-76 2-76 (225)
355 cd05125 Mth938_2P1-like Mth938 48.1 80 0.0017 20.9 5.9 57 64-120 52-114 (114)
356 PRK06550 fabG 3-ketoacyl-(acyl 48.1 97 0.0021 21.9 11.4 71 1-75 1-76 (235)
357 PRK07045 putative monooxygenas 47.6 33 0.00073 26.7 4.2 35 1-36 1-35 (388)
358 TIGR01470 cysG_Nterm siroheme 47.6 87 0.0019 22.7 6.1 63 4-77 8-80 (205)
359 TIGR01832 kduD 2-deoxy-D-gluco 47.4 1E+02 0.0022 22.0 6.9 72 1-76 1-90 (248)
360 cd08281 liver_ADH_like1 Zinc-d 47.3 88 0.0019 24.3 6.5 31 5-36 192-223 (371)
361 cd08294 leukotriene_B4_DH_like 47.3 1.1E+02 0.0023 22.9 6.8 30 5-36 144-175 (329)
362 PLN02657 3,8-divinyl protochlo 47.2 71 0.0015 25.4 6.0 67 5-74 60-144 (390)
363 TIGR01618 phage_P_loop phage n 46.8 1.2E+02 0.0025 22.5 7.1 75 5-84 12-99 (220)
364 TIGR03329 Phn_aa_oxid putative 46.7 32 0.00069 27.8 4.0 30 6-36 25-56 (460)
365 TIGR03325 BphB_TodD cis-2,3-di 46.7 1.1E+02 0.0024 22.2 7.5 71 1-75 1-88 (262)
366 COG5459 Predicted rRNA methyla 46.6 6.9 0.00015 31.7 0.2 34 3-36 112-145 (484)
367 cd01338 MDH_choloroplast_like 46.6 1.4E+02 0.003 23.3 7.8 33 4-36 1-40 (322)
368 PRK12475 thiamine/molybdopteri 46.4 1.2E+02 0.0027 23.8 7.1 32 4-36 23-55 (338)
369 COG0451 WcaG Nucleoside-diphos 46.3 31 0.00067 25.5 3.7 63 8-77 3-75 (314)
370 PRK06370 mercuric reductase; V 46.1 39 0.00084 27.3 4.4 35 1-36 1-35 (463)
371 COG1179 Dinucleotide-utilizing 45.7 1.1E+02 0.0024 23.5 6.4 32 4-36 29-61 (263)
372 PRK09424 pntA NAD(P) transhydr 45.2 44 0.00095 28.0 4.6 31 4-36 164-195 (509)
373 PLN02206 UDP-glucuronate decar 44.8 90 0.002 25.4 6.3 63 3-75 117-192 (442)
374 PRK06847 hypothetical protein; 44.6 41 0.00089 25.9 4.2 32 4-36 3-34 (375)
375 PRK08217 fabG 3-ketoacyl-(acyl 44.2 1.1E+02 0.0025 21.6 8.3 74 1-75 1-91 (253)
376 COG0604 Qor NADPH:quinone redu 43.8 1.2E+02 0.0025 23.7 6.6 62 5-72 143-217 (326)
377 PLN02896 cinnamyl-alcohol dehy 43.7 1.5E+02 0.0032 22.8 7.2 66 4-76 9-89 (353)
378 PRK13656 trans-2-enoyl-CoA red 43.6 43 0.00093 27.3 4.2 34 3-36 39-73 (398)
379 PRK07478 short chain dehydroge 43.4 1.2E+02 0.0027 21.8 7.2 72 1-76 2-93 (254)
380 PRK09496 trkA potassium transp 43.4 68 0.0015 25.6 5.4 66 5-75 231-306 (453)
381 TIGR00853 pts-lac PTS system, 42.9 24 0.00053 22.5 2.3 60 5-78 3-62 (95)
382 PRK07877 hypothetical protein; 41.5 1E+02 0.0022 27.1 6.4 33 4-36 106-138 (722)
383 PRK12723 flagellar biosynthesi 41.4 1.1E+02 0.0023 24.8 6.1 71 4-79 173-267 (388)
384 PRK06849 hypothetical protein; 41.3 39 0.00084 26.7 3.7 34 2-36 1-35 (389)
385 PLN00141 Tic62-NAD(P)-related 40.9 1.4E+02 0.003 21.7 6.8 68 4-75 16-94 (251)
386 KOG1227 Putative methyltransfe 40.4 11 0.00024 29.8 0.4 61 4-74 194-270 (351)
387 PLN02740 Alcohol dehydrogenase 40.3 1.7E+02 0.0036 22.9 7.1 31 5-36 199-230 (381)
388 PRK07411 hypothetical protein; 40.2 1.2E+02 0.0026 24.3 6.3 32 4-36 37-69 (390)
389 PF01262 AlaDh_PNT_C: Alanine 40.2 67 0.0015 22.2 4.4 32 3-36 18-50 (168)
390 PRK08020 ubiF 2-octaprenyl-3-m 39.5 56 0.0012 25.4 4.3 35 1-36 1-35 (391)
391 PF00437 T2SE: Type II/IV secr 39.3 1.6E+02 0.0034 21.8 7.1 64 5-73 127-204 (270)
392 TIGR03589 PseB UDP-N-acetylglu 39.2 1.1E+02 0.0024 23.4 5.8 68 4-76 3-84 (324)
393 PLN03154 putative allyl alcoho 39.0 1.7E+02 0.0037 22.5 6.9 30 5-36 159-190 (348)
394 PRK05717 oxidoreductase; Valid 38.9 1.5E+02 0.0032 21.4 6.4 69 4-76 9-94 (255)
395 PRK13900 type IV secretion sys 38.6 1.9E+02 0.0042 22.7 7.3 32 5-36 160-194 (332)
396 PRK14493 putative bifunctional 38.6 1E+02 0.0023 23.5 5.5 24 13-36 10-35 (274)
397 PF01494 FAD_binding_3: FAD bi 38.2 1E+02 0.0023 22.9 5.5 29 7-36 3-31 (356)
398 PF01358 PARP_regulatory: Poly 38.2 1.5E+02 0.0032 23.3 6.2 65 3-72 57-133 (294)
399 PRK14729 miaA tRNA delta(2)-is 38.0 53 0.0011 25.6 3.8 30 6-36 5-35 (300)
400 PRK04308 murD UDP-N-acetylmura 37.9 1.5E+02 0.0032 23.9 6.5 71 1-82 1-84 (445)
401 PF04378 RsmJ: Ribosomal RNA s 37.9 1.8E+02 0.0039 22.1 6.9 68 13-84 64-146 (245)
402 PF14252 DUF4347: Domain of un 37.7 65 0.0014 22.8 4.0 48 69-117 2-53 (165)
403 PRK07236 hypothetical protein; 37.6 63 0.0014 25.2 4.3 33 3-36 4-36 (386)
404 cd08293 PTGR2 Prostaglandin re 37.5 1.7E+02 0.0036 22.1 6.6 29 6-36 156-187 (345)
405 PRK06200 2,3-dihydroxy-2,3-dih 37.5 1.6E+02 0.0034 21.3 7.8 71 2-76 3-90 (263)
406 PRK11889 flhF flagellar biosyn 37.4 1.3E+02 0.0028 24.9 6.0 72 4-79 240-333 (436)
407 COG1255 Uncharacterized protei 37.1 77 0.0017 21.6 4.0 60 4-72 13-76 (129)
408 COG1252 Ndh NADH dehydrogenase 37.0 89 0.0019 25.5 5.1 69 4-75 2-108 (405)
409 COG0773 MurC UDP-N-acetylmuram 36.9 76 0.0017 26.4 4.7 70 5-84 7-85 (459)
410 PLN02260 probable rhamnose bio 36.6 1.3E+02 0.0028 25.6 6.2 68 3-75 4-89 (668)
411 COG2894 MinD Septum formation 36.3 1.2E+02 0.0026 23.3 5.3 29 94-123 97-125 (272)
412 PRK08125 bifunctional UDP-gluc 36.2 1.4E+02 0.003 25.5 6.4 62 4-72 314-388 (660)
413 PF14314 Methyltrans_Mon: Viru 36.2 3E+02 0.0065 24.2 8.6 29 3-32 321-349 (675)
414 cd05565 PTS_IIB_lactose PTS_II 36.2 12 0.00027 24.3 0.1 64 7-84 2-65 (99)
415 COG3129 Predicted SAM-dependen 35.8 34 0.00074 26.3 2.4 65 6-75 80-162 (292)
416 PRK12727 flagellar biosynthesi 35.8 1.8E+02 0.004 24.8 6.9 18 4-21 349-367 (559)
417 PLN02214 cinnamoyl-CoA reducta 35.7 2E+02 0.0044 22.1 7.2 66 4-76 9-91 (342)
418 PF06016 Reovirus_L2: Reovirus 35.5 76 0.0017 29.7 4.8 60 4-72 822-889 (1289)
419 PRK08850 2-octaprenyl-6-methox 35.5 61 0.0013 25.5 3.9 31 5-36 4-34 (405)
420 cd01489 Uba2_SUMO Ubiquitin ac 35.5 1.5E+02 0.0033 23.2 6.0 29 7-36 1-30 (312)
421 TIGR03029 EpsG chain length de 35.4 1.8E+02 0.004 21.5 6.4 44 64-108 210-262 (274)
422 PF00732 GMC_oxred_N: GMC oxid 35.4 68 0.0015 23.9 4.0 31 8-38 3-33 (296)
423 PRK12815 carB carbamoyl phosph 35.2 1.5E+02 0.0032 27.2 6.7 34 3-36 5-48 (1068)
424 PRK05579 bifunctional phosphop 35.1 2.4E+02 0.0053 22.8 7.9 75 4-81 187-282 (399)
425 PRK08213 gluconate 5-dehydroge 35.1 97 0.0021 22.4 4.8 70 3-76 10-99 (259)
426 PTZ00383 malate:quinone oxidor 34.7 74 0.0016 26.5 4.4 33 4-36 44-77 (497)
427 PRK08328 hypothetical protein; 34.7 73 0.0016 23.5 4.0 32 4-36 26-58 (231)
428 PRK14852 hypothetical protein; 34.6 1.9E+02 0.0042 26.5 7.1 32 4-36 331-363 (989)
429 PRK08642 fabG 3-ketoacyl-(acyl 34.5 1.7E+02 0.0037 20.8 7.4 72 1-75 1-90 (253)
430 PRK05447 1-deoxy-D-xylulose 5- 34.4 65 0.0014 26.1 3.9 31 6-36 2-34 (385)
431 PRK08013 oxidoreductase; Provi 34.3 1.4E+02 0.0031 23.4 5.9 30 6-36 4-33 (400)
432 PRK14851 hypothetical protein; 34.0 2.1E+02 0.0045 25.0 7.1 32 4-36 42-74 (679)
433 PLN02748 tRNA dimethylallyltra 33.8 63 0.0014 26.8 3.8 36 1-36 18-54 (468)
434 PRK06139 short chain dehydroge 33.6 2.1E+02 0.0045 22.1 6.6 73 3-76 5-94 (330)
435 PRK06249 2-dehydropantoate 2-r 33.6 2.2E+02 0.0047 21.8 7.2 34 1-36 1-35 (313)
436 COG4962 CpaF Flp pilus assembl 33.6 49 0.0011 26.6 3.0 28 9-36 178-207 (355)
437 cd05188 MDR Medium chain reduc 33.5 93 0.002 22.1 4.4 31 4-36 134-165 (271)
438 PRK09987 dTDP-4-dehydrorhamnos 33.4 61 0.0013 24.4 3.5 29 7-36 2-30 (299)
439 PRK05690 molybdopterin biosynt 33.3 80 0.0017 23.5 4.1 32 4-36 31-63 (245)
440 PRK07067 sorbitol dehydrogenas 33.2 93 0.002 22.4 4.4 70 2-75 3-89 (257)
441 PRK05866 short chain dehydroge 33.2 2.1E+02 0.0045 21.5 7.3 73 3-76 38-127 (293)
442 PF11599 AviRa: RRNA methyltra 33.1 47 0.001 25.1 2.7 33 4-36 51-84 (246)
443 TIGR02355 moeB molybdopterin s 33.0 85 0.0018 23.4 4.2 32 4-36 23-55 (240)
444 TIGR01369 CPSaseII_lrg carbamo 32.9 1.3E+02 0.0029 27.5 6.0 67 2-73 3-88 (1050)
445 PRK06126 hypothetical protein; 32.6 70 0.0015 26.4 4.0 34 2-36 4-37 (545)
446 PRK05294 carB carbamoyl phosph 32.5 1.2E+02 0.0026 27.7 5.6 66 3-73 5-89 (1066)
447 KOG1298 Squalene monooxygenase 32.4 2E+02 0.0043 24.0 6.3 31 5-36 45-75 (509)
448 TIGR03201 dearomat_had 6-hydro 32.4 93 0.002 23.9 4.4 30 5-36 167-197 (349)
449 TIGR01544 HAD-SF-IE haloacid d 31.7 2.1E+02 0.0045 22.1 6.1 33 42-80 238-270 (277)
450 PRK07576 short chain dehydroge 31.7 2.1E+02 0.0045 20.9 7.6 70 2-75 6-95 (264)
451 PRK09590 celB cellobiose phosp 31.6 40 0.00087 22.0 2.0 66 7-84 3-68 (104)
452 PRK08773 2-octaprenyl-3-methyl 31.5 1E+02 0.0022 24.1 4.5 31 5-36 6-36 (392)
453 TIGR02356 adenyl_thiF thiazole 31.2 90 0.002 22.4 4.0 32 4-36 20-52 (202)
454 KOG1198 Zinc-binding oxidoredu 31.2 1.6E+02 0.0036 23.2 5.7 61 5-71 158-230 (347)
455 PLN02568 polyamine oxidase 31.2 1.3E+02 0.0027 25.3 5.3 34 1-36 1-40 (539)
456 cd01483 E1_enzyme_family Super 31.0 88 0.0019 20.8 3.7 29 7-36 1-30 (143)
457 TIGR01381 E1_like_apg7 E1-like 31.0 83 0.0018 27.4 4.2 32 4-36 337-369 (664)
458 PLN00112 malate dehydrogenase 30.9 3.1E+02 0.0067 22.7 8.8 33 4-36 99-140 (444)
459 PHA03297 envelope glycoprotein 30.8 12 0.00026 26.4 -0.6 16 4-19 39-54 (185)
460 PRK09564 coenzyme A disulfide 30.8 85 0.0018 25.0 4.1 30 7-36 2-32 (444)
461 PRK05786 fabG 3-ketoacyl-(acyl 30.8 1.1E+02 0.0023 21.7 4.3 74 1-75 1-90 (238)
462 PTZ00318 NADH dehydrogenase-li 30.7 1.1E+02 0.0023 24.5 4.7 31 4-36 9-40 (424)
463 KOG3851 Sulfide:quinone oxidor 30.5 82 0.0018 25.5 3.8 32 4-36 38-71 (446)
464 cd08239 THR_DH_like L-threonin 30.4 1.8E+02 0.0039 22.0 5.7 30 5-36 164-195 (339)
465 PRK07608 ubiquinone biosynthes 30.2 1.8E+02 0.0039 22.4 5.8 50 6-56 6-64 (388)
466 PRK07890 short chain dehydroge 30.1 2.1E+02 0.0045 20.5 10.2 75 1-76 1-92 (258)
467 PRK07688 thiamine/molybdopteri 30.1 90 0.0019 24.6 4.0 32 4-36 23-55 (339)
468 PRK06914 short chain dehydroge 29.9 2.2E+02 0.0048 20.7 7.4 67 5-75 3-90 (280)
469 PLN02602 lactate dehydrogenase 29.8 2.9E+02 0.0062 22.0 8.3 31 6-36 38-69 (350)
470 PRK05249 soluble pyridine nucl 29.6 1E+02 0.0022 24.8 4.4 34 1-36 1-35 (461)
471 TIGR03499 FlhF flagellar biosy 29.6 1.1E+02 0.0024 23.2 4.4 18 5-22 194-212 (282)
472 cd08230 glucose_DH Glucose deh 29.5 1.2E+02 0.0025 23.4 4.5 31 4-36 172-203 (355)
473 TIGR00027 mthyl_TIGR00027 meth 29.5 1.8E+02 0.0039 21.9 5.5 47 4-52 81-143 (260)
474 PRK09754 phenylpropionate diox 29.4 84 0.0018 24.8 3.8 33 4-36 2-35 (396)
475 PRK08993 2-deoxy-D-gluconate 3 29.3 2.2E+02 0.0048 20.5 7.6 73 3-76 8-95 (253)
476 PRK09126 hypothetical protein; 29.0 92 0.002 24.2 3.9 30 6-36 4-33 (392)
477 PRK07190 hypothetical protein; 28.8 1.7E+02 0.0036 24.1 5.5 35 1-36 1-35 (487)
478 TIGR02825 B4_12hDH leukotriene 28.7 2.5E+02 0.0055 21.0 7.4 30 5-36 139-170 (325)
479 PF07101 DUF1363: Protein of u 28.7 21 0.00045 23.5 0.2 18 7-24 5-22 (124)
480 PRK07856 short chain dehydroge 28.5 2.2E+02 0.0049 20.4 8.3 71 1-75 2-84 (252)
481 PRK05703 flhF flagellar biosyn 28.5 2.8E+02 0.006 22.6 6.7 16 6-21 222-238 (424)
482 COG4017 Uncharacterized protei 28.4 82 0.0018 23.6 3.2 32 3-36 43-74 (254)
483 PRK06475 salicylate hydroxylas 27.9 87 0.0019 24.6 3.7 30 6-36 3-32 (400)
484 cd02037 MRP-like MRP (Multiple 27.9 90 0.0019 21.3 3.4 65 14-79 10-80 (169)
485 TIGR00675 dcm DNA-methyltransf 27.5 1.3E+02 0.0027 23.3 4.4 55 8-73 1-66 (315)
486 cd08278 benzyl_alcohol_DH Benz 27.1 2.9E+02 0.0064 21.3 6.9 31 5-36 187-218 (365)
487 TIGR01988 Ubi-OHases Ubiquinon 27.1 1.1E+02 0.0023 23.5 3.9 28 8-36 2-29 (385)
488 PF00070 Pyr_redox: Pyridine n 26.9 1.2E+02 0.0026 17.9 3.4 28 7-36 1-29 (80)
489 PRK05057 aroK shikimate kinase 26.8 96 0.0021 21.6 3.4 34 3-36 2-36 (172)
490 PRK08220 2,3-dihydroxybenzoate 26.7 2.4E+02 0.0051 20.1 8.2 70 3-76 6-86 (252)
491 PF11312 DUF3115: Protein of u 26.7 1.4E+02 0.003 23.6 4.5 23 4-26 86-108 (315)
492 PF13241 NAD_binding_7: Putati 26.5 1.7E+02 0.0038 18.4 5.0 62 3-76 5-70 (103)
493 PLN00093 geranylgeranyl diphos 26.4 1.3E+02 0.0028 24.6 4.4 31 5-36 39-69 (450)
494 PRK09288 purT phosphoribosylgl 26.2 2.2E+02 0.0048 22.2 5.7 32 3-36 10-42 (395)
495 TIGR01969 minD_arch cell divis 26.1 2.5E+02 0.0054 20.1 6.0 16 65-80 107-122 (251)
496 PRK09291 short chain dehydroge 26.1 2.5E+02 0.0054 20.0 6.5 65 6-76 3-83 (257)
497 PRK06153 hypothetical protein; 26.0 1.1E+02 0.0025 24.9 4.0 32 4-36 175-207 (393)
498 PRK08085 gluconate 5-dehydroge 25.7 2.5E+02 0.0055 20.1 7.9 71 2-76 6-96 (254)
499 PRK12409 D-amino acid dehydrog 25.7 1.3E+02 0.0027 23.7 4.2 28 6-36 2-31 (410)
500 PRK08267 short chain dehydroge 25.7 2.6E+02 0.0056 20.1 7.3 71 6-77 2-88 (260)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.97 E-value=6.1e-31 Score=192.71 Aligned_cols=122 Identities=38% Similarity=0.668 Sum_probs=101.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.+|++||||||++||||+|||+++|++|+|+++| +|+.++|+++.||+.+.++.+..+. +.++|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-EEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-TTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-CCCce
Confidence 5799999999999999999999999899999999 7888999999999999999886431 13589
Q ss_pred eEEEEcCCCcCCHHHHhh--------------hC-------CCCCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171 68 DYAFMDADKDNYCNYMRE--------------QV-------PDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125 (125)
Q Consensus 68 D~v~id~~~~~~~~~~~~--------------~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i 125 (125)
||||+|++|++|..||+. |+ .+........++++||++|.+||+|++++||+|||+.|
T Consensus 123 D~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l 201 (205)
T PF01596_consen 123 DFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTL 201 (205)
T ss_dssp EEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEE
T ss_pred eEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEE
Confidence 999999999999999982 21 11112236667999999999999999999999999975
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.96 E-value=3.3e-28 Score=182.62 Aligned_cols=123 Identities=44% Similarity=0.769 Sum_probs=102.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.+|++||||||++||||+|||++++++|+|+++| +|+.++|+++.|++.+.++.+..+....++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4789999999999999999999998899999999 7888999999999999999875321012689
Q ss_pred eEEEEcCCCcCCHHHHhh--------------hC------CCCC--Cc-c----hHHHHHHHHHHhhcCCCeEEEEeecC
Q 042171 68 DYAFMDADKDNYCNYMRE--------------QV------PDHF--RG-S----SKQAILDLNRSLVDDPCVQLSHVALG 120 (125)
Q Consensus 68 D~v~id~~~~~~~~~~~~--------------~~------~~~~--~~-~----~~~~~~~~~~~l~~~~~~~~~~lp~~ 120 (125)
||||+|++|.+|+.||+. |+ .+.. .. . ..+++++||+.|.++|+|++++||+|
T Consensus 158 D~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPig 237 (247)
T PLN02589 158 DFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVG 237 (247)
T ss_pred cEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeC
Confidence 999999999999999982 21 0110 10 1 13468999999999999999999999
Q ss_pred CcccC
Q 042171 121 ESVDI 125 (125)
Q Consensus 121 ~G~~i 125 (125)
||+.|
T Consensus 238 DGl~l 242 (247)
T PLN02589 238 DGITL 242 (247)
T ss_pred CccEE
Confidence 99975
No 3
>PLN02476 O-methyltransferase
Probab=99.95 E-value=6.6e-28 Score=183.41 Aligned_cols=122 Identities=35% Similarity=0.620 Sum_probs=103.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.++++||||||++||||+|||++++++|+|+++| +|+.++|+++.||+.+.|+.+..+ +..++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCC
Confidence 4789999999999999999999998889999999 788889999999999999887432 113689
Q ss_pred eEEEEcCCCcCCHHHHhh--------------hC------CC-CCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171 68 DYAFMDADKDNYCNYMRE--------------QV------PD-HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125 (125)
Q Consensus 68 D~v~id~~~~~~~~~~~~--------------~~------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i 125 (125)
||||+|++|++|++||+. |+ .+ ..++..+.++++||+.+.++|+|++++||+|||++|
T Consensus 196 D~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i 274 (278)
T PLN02476 196 DFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTI 274 (278)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEE
Confidence 999999999999999992 21 11 111235678999999999999999999999999975
No 4
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=176.43 Aligned_cols=118 Identities=36% Similarity=0.640 Sum_probs=101.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEe-cchHHHHHHHhhcCCCCCc
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIE-SEALSVLDQLLKDSENEVN 66 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~-gd~~~~l~~~~~~~~~~~~ 66 (125)
.++++||||||+.||||+|||.++|.++++++|| +|+.++|+++. ||+.+.+..+ ..++
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~ 132 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGS 132 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCC
Confidence 5789999999999999999999999889999999 78989999999 6999988752 1589
Q ss_pred eeEEEEcCCCcCCHHHHhh--------------hC------CCC-CCc--chHHHHHHHHHHhhcCCCeEEEEeecCCcc
Q 042171 67 FDYAFMDADKDNYCNYMRE--------------QV------PDH-FRG--SSKQAILDLNRSLVDDPCVQLSHVALGESV 123 (125)
Q Consensus 67 fD~v~id~~~~~~~~~~~~--------------~~------~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~ 123 (125)
||+||+|++|.+|++||+. |+ .+. .+. ...+++++|++.+.++|+++++++|+|||+
T Consensus 133 fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl 212 (219)
T COG4122 133 FDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGL 212 (219)
T ss_pred ccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCce
Confidence 9999999999999999992 22 111 112 255669999999999999999999999999
Q ss_pred cC
Q 042171 124 DI 125 (125)
Q Consensus 124 ~i 125 (125)
.|
T Consensus 213 ~v 214 (219)
T COG4122 213 LL 214 (219)
T ss_pred EE
Confidence 75
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.94 E-value=3.5e-26 Score=170.43 Aligned_cols=122 Identities=51% Similarity=0.860 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.++++|||||||+||+++||+++++++++|+++| +++.++|+++.||+.+.++.+..+. +.++|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~-~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND-PKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC-CCCCC
Confidence 4789999999999999999999998789999999 6788899999999999988774321 13689
Q ss_pred eEEEEcCCCcCCHHHHhhh--------------C------CCCC---Cc---chHHHHHHHHHHhhcCCCeEEEEeecCC
Q 042171 68 DYAFMDADKDNYCNYMREQ--------------V------PDHF---RG---SSKQAILDLNRSLVDDPCVQLSHVALGE 121 (125)
Q Consensus 68 D~v~id~~~~~~~~~~~~~--------------~------~~~~---~~---~~~~~~~~~~~~l~~~~~~~~~~lp~~~ 121 (125)
|+||+|++++.|+.|++.. + .+.. +. ...+++++|+++|.++|+|++++||+||
T Consensus 146 D~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gd 225 (234)
T PLN02781 146 DFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGD 225 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCC
Confidence 9999999999999999831 1 0100 00 1467899999999999999999999999
Q ss_pred cccC
Q 042171 122 SVDI 125 (125)
Q Consensus 122 G~~i 125 (125)
|++|
T Consensus 226 G~~i 229 (234)
T PLN02781 226 GVTL 229 (234)
T ss_pred ccEE
Confidence 9975
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=1e-25 Score=165.82 Aligned_cols=122 Identities=50% Similarity=0.830 Sum_probs=106.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.+|+++||||++||||++.+|.++|++|+|+++| ++..++|++++|.+.+.|+++.++. +.++|
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~-~~~tf 150 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG-ESGTF 150 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC-CCCce
Confidence 4799999999999999999999999999999999 7888999999999999999987764 46889
Q ss_pred eEEEEcCCCcCCHHHHhh--------------hC--------CCCCCcchHHHHH---HHHHHhhcCCCeEEEEeecCCc
Q 042171 68 DYAFMDADKDNYCNYMRE--------------QV--------PDHFRGSSKQAIL---DLNRSLVDDPCVQLSHVALGES 122 (125)
Q Consensus 68 D~v~id~~~~~~~~~~~~--------------~~--------~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~lp~~~G 122 (125)
||+|+|++|.+|..|++. |+ |+...+.+...++ +||++|.+|||+..+.+|+|||
T Consensus 151 DfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG 230 (237)
T KOG1663|consen 151 DFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDG 230 (237)
T ss_pred eEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCc
Confidence 999999999999999882 21 1111113677788 9999999999999999999999
Q ss_pred ccC
Q 042171 123 VDI 125 (125)
Q Consensus 123 ~~i 125 (125)
+.|
T Consensus 231 ~~i 233 (237)
T KOG1663|consen 231 ITI 233 (237)
T ss_pred eee
Confidence 875
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.28 E-value=4e-11 Score=78.56 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=52.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|..++++++..+ +.+|+++| .+..++|+++++|+ ...... .++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence 357999999999999999999666 79999999 36678999999999 332222 46799
Q ss_pred EEEEcC
Q 042171 69 YAFMDA 74 (125)
Q Consensus 69 ~v~id~ 74 (125)
+|++..
T Consensus 73 ~v~~~~ 78 (112)
T PF12847_consen 73 LVICSG 78 (112)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999977
No 8
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=92.94 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=83.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||+|||+|..++.+|++.+ ..+|++|| +++.+||+++++|..++.+... ..+||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~~fD 117 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FASFD 117 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----ccccC
Confidence 467999999999999999999987 49999999 6788999999999999876642 45799
Q ss_pred EEEEcCCCcCCHHHHhhhCCC----------CCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcc
Q 042171 69 YAFMDADKDNYCNYMREQVPD----------HFRGSSKQAILDLNRSLVDDPCVQLSHVALGESV 123 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~ 123 (125)
+|++ +|+||+.+... +......+..-+...++.++.+..+.++|-..+.
T Consensus 118 ~Ii~------NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ 176 (248)
T COG4123 118 LIIC------NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLA 176 (248)
T ss_pred EEEe------CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHH
Confidence 9996 89999855331 1111345556666677777888888888766553
No 9
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=4.5e-11 Score=87.79 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=59.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|+.+..+++.++++++|+++| .++ .+++++.+|+.+.++. ..+||
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~-------~~~fD 147 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEE-------NAPYD 147 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCc-------CCCcC
Confidence 457999999999999999999987679999999 234 5799999999765432 47899
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
.|++++.....++-+.
T Consensus 148 ~I~~~~~~~~~~~~l~ 163 (212)
T PRK13942 148 RIYVTAAGPDIPKPLI 163 (212)
T ss_pred EEEECCCcccchHHHH
Confidence 9999988766654433
No 10
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=5.8e-11 Score=86.70 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=57.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||||||+|+.+..+++.+++.++|+++| .++..+++++.+|+.+.++. ..+||.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~ 145 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HAPFDA 145 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CCCccE
Confidence 46999999999999999999987678999999 34545799999999876542 468999
Q ss_pred EEEcCCCcCCHH
Q 042171 70 AFMDADKDNYCN 81 (125)
Q Consensus 70 v~id~~~~~~~~ 81 (125)
|++++.....++
T Consensus 146 Ii~~~~~~~~~~ 157 (205)
T PRK13944 146 IIVTAAASTIPS 157 (205)
T ss_pred EEEccCcchhhH
Confidence 999987655544
No 11
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.19 E-value=7.5e-11 Score=86.51 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=59.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|+.++.|++..+++++|+++| .++ ++++++.+|+.+.++. ..+||
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD 148 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYD 148 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCC
Confidence 456999999999999999999987678999999 344 5799999999876432 36899
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
+|++++.....++.+.
T Consensus 149 ~Ii~~~~~~~~~~~~~ 164 (215)
T TIGR00080 149 RIYVTAAGPKIPEALI 164 (215)
T ss_pred EEEEcCCcccccHHHH
Confidence 9999988777665544
No 12
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.17 E-value=5.3e-11 Score=87.62 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=56.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+||.|..|++.+++.++|+++| .+. .+|+++.+|+...++. ..+||
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~-------~apfD 143 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPE-------EAPFD 143 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGG-------G-SEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhcccc-------CCCcC
Confidence 346999999999999999999988789999999 234 4899999999877664 47899
Q ss_pred EEEEcCCCcCCH-HHHh
Q 042171 69 YAFMDADKDNYC-NYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~-~~~~ 84 (125)
.|++.++.+..| .|++
T Consensus 144 ~I~v~~a~~~ip~~l~~ 160 (209)
T PF01135_consen 144 RIIVTAAVPEIPEALLE 160 (209)
T ss_dssp EEEESSBBSS--HHHHH
T ss_pred EEEEeeccchHHHHHHH
Confidence 999999887765 4555
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.15 E-value=2.5e-10 Score=85.49 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||||||||..|+.+++..+ .++|+++| .+... |++++|||+++ | + ++++||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-----~D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-----PDNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-----CCCccC
Confidence 468999999999999999999999 89999999 23333 99999999876 5 5 378999
Q ss_pred EEEEcCCCcCCH
Q 042171 69 YAFMDADKDNYC 80 (125)
Q Consensus 69 ~v~id~~~~~~~ 80 (125)
+|.+...-++.+
T Consensus 122 ~vt~~fglrnv~ 133 (238)
T COG2226 122 AVTISFGLRNVT 133 (238)
T ss_pred EEEeeehhhcCC
Confidence 999987766554
No 14
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.3e-10 Score=85.37 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=59.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+||.|..||+.. ++|+++| .|+ .+|++++||...-+|. ..+||
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~~~-------~aPyD 140 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGWPE-------EAPYD 140 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCCCC-------CCCcC
Confidence 45799999999999999999985 4999999 455 3599999999988775 58999
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
.|++.++....|+-|-
T Consensus 141 ~I~Vtaaa~~vP~~Ll 156 (209)
T COG2518 141 RIIVTAAAPEVPEALL 156 (209)
T ss_pred EEEEeeccCCCCHHHH
Confidence 9999999887765444
No 15
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.14 E-value=9.3e-10 Score=79.45 Aligned_cols=73 Identities=25% Similarity=0.305 Sum_probs=61.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+++|||||||..++.++...| .++|++|| .++ +++++++|++.+.|+.+ .+||
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~-------~~~d 104 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDL-------PSPD 104 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCC-------CCCC
Confidence 446899999999999999995555 89999999 564 89999999999987753 4799
Q ss_pred EEEEcCCCcCCHHHHhhh
Q 042171 69 YAFMDADKDNYCNYMREQ 86 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~~~ 86 (125)
.||+.+. .+.+..++.+
T Consensus 105 aiFIGGg-~~i~~ile~~ 121 (187)
T COG2242 105 AIFIGGG-GNIEEILEAA 121 (187)
T ss_pred EEEECCC-CCHHHHHHHH
Confidence 9999999 7888887744
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.11 E-value=2.4e-10 Score=82.19 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=55.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|++++.+++..+ +++|+++| .++ ++++++++|+.+. +. .++||
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~-~~-------~~~fD 111 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDF-QH-------EEQFD 111 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhc-cc-------cCCcc
Confidence 467999999999999999998665 68999999 344 4699999999875 21 47899
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
+|++++ ...++.+++
T Consensus 112 ~I~s~~-~~~~~~~~~ 126 (181)
T TIGR00138 112 VITSRA-LASLNVLLE 126 (181)
T ss_pred EEEehh-hhCHHHHHH
Confidence 999987 444555555
No 17
>PRK04457 spermidine synthase; Provisional
Probab=99.11 E-value=4.8e-10 Score=84.94 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=56.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC---CCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR---VDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~---~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++++|||||||+|.++.++++..| +.+++++| .+ ..++++++.+|+.+.++.. .++||
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD 138 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------RHSTD 138 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCC
Confidence 578999999999999999999887 79999999 12 2478999999999987653 46899
Q ss_pred EEEEcCCCc
Q 042171 69 YAFMDADKD 77 (125)
Q Consensus 69 ~v~id~~~~ 77 (125)
+|++|+...
T Consensus 139 ~I~~D~~~~ 147 (262)
T PRK04457 139 VILVDGFDG 147 (262)
T ss_pred EEEEeCCCC
Confidence 999998643
No 18
>PLN03075 nicotianamine synthase; Provisional
Probab=99.11 E-value=2.5e-10 Score=87.85 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=58.4
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe----------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID----------------ARVDHKINFIESEALSVLDQLLKDSENEVN 66 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD----------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~ 66 (125)
+|++|+||||| .|+++++++.+..++++++++| .++.++++|+.+|+.+..+. .+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-------LKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-------cCC
Confidence 78999999999 6677888887665589999999 35668899999999886332 367
Q ss_pred eeEEEEcC----CCcCCHHHHh
Q 042171 67 FDYAFMDA----DKDNYCNYMR 84 (125)
Q Consensus 67 fD~v~id~----~~~~~~~~~~ 84 (125)
||+||+++ ++..+..+++
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~ 217 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIE 217 (296)
T ss_pred cCEEEEecccccccccHHHHHH
Confidence 99999996 2455666666
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.10 E-value=6.9e-10 Score=80.44 Aligned_cols=76 Identities=25% Similarity=0.346 Sum_probs=61.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..++.+++.+++.++|+++| .++.++++++.+|+.+.++.+ .++||
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~~~D 113 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NEKFD 113 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CCCCC
Confidence 346899999999999999999886678999999 344578999999998876653 36799
Q ss_pred EEEEcCCCcCCHHHHhh
Q 042171 69 YAFMDADKDNYCNYMRE 85 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~~ 85 (125)
.||++.....+..+++.
T Consensus 114 ~V~~~~~~~~~~~~l~~ 130 (198)
T PRK00377 114 RIFIGGGSEKLKEIISA 130 (198)
T ss_pred EEEECCCcccHHHHHHH
Confidence 99998766666667763
No 20
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.09 E-value=3.3e-10 Score=83.29 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCccc--HHHHHHHhhC-CCCCEEEEEe---------------CCCCCcEEEEecch-HHHHHHHhhcCCC
Q 042171 3 LKLKKTIEIGVFTG--YSLFLTALTI-PEDGQITAID---------------ARVDHKINFIESEA-LSVLDQLLKDSEN 63 (125)
Q Consensus 3 ~~~~~vLeiG~g~G--~~t~~la~~~-~~~~~v~~iD---------------~~~~~~i~~~~gd~-~~~l~~~~~~~~~ 63 (125)
.+++.|+|+++.-| .+|+.||-+. ..+|++++|- .++.+.++|+.|+. .+.++.+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~------ 113 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL------ 113 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc------
Confidence 46789999977644 3566666554 3579999998 45667789999985 5577765
Q ss_pred CCceeEEEEcCCCcCCH-HHHhhhC---------CCCCCcchHHHHHHHHHHhhcCCCeEEEEeecCCcccC
Q 042171 64 EVNFDYAFMDADKDNYC-NYMREQV---------PDHFRGSSKQAILDLNRSLVDDPCVQLSHVALGESVDI 125 (125)
Q Consensus 64 ~~~fD~v~id~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~i 125 (125)
...||+++|+..++|. .+|+... -.+... ....--++...++..+.+++++||||.|++|
T Consensus 114 -~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na~~-r~~~~~~w~~~~~~~r~Vrsv~LPIG~GleV 183 (218)
T PF07279_consen 114 -KGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNAFS-RSTNGFSWRSVLRGRRVVRSVFLPIGKGLEV 183 (218)
T ss_pred -cCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEecccc-CCcCCccHHHhcCCCCceeEEEeccCCCeEE
Confidence 5699999999999998 8888321 111111 1111236777787888899999999999975
No 21
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.08 E-value=1e-10 Score=76.63 Aligned_cols=64 Identities=28% Similarity=0.623 Sum_probs=28.1
Q ss_pred EEEcCcccHHHHHHHhhCCCCC--EEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 9 IEIGVFTGYSLFLTALTIPEDG--QITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 9 LeiG~g~G~~t~~la~~~~~~~--~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
|||||..|+||++|++++++.+ +++++| .++.+++++++++..+.++.+. ..+||++|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEEE
Confidence 7999999999999999998654 899999 1345689999999999988873 378999999
Q ss_pred cCCCc
Q 042171 73 DADKD 77 (125)
Q Consensus 73 d~~~~ 77 (125)
|+.+.
T Consensus 76 Dg~H~ 80 (106)
T PF13578_consen 76 DGDHS 80 (106)
T ss_dssp ES---
T ss_pred CCCCC
Confidence 99874
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.06 E-value=7.5e-10 Score=76.82 Aligned_cols=67 Identities=28% Similarity=0.365 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.+..+|||+|||+|..+..+++.+.++++++++| .++. +++++++|..+ ++... .++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence 4678999999999999999997665589999999 4564 89999999998 55310 2689
Q ss_pred eEEEEcCCC
Q 042171 68 DYAFMDADK 76 (125)
Q Consensus 68 D~v~id~~~ 76 (125)
|+|++....
T Consensus 75 D~I~~~~~l 83 (152)
T PF13847_consen 75 DIIISNGVL 83 (152)
T ss_dssp EEEEEESTG
T ss_pred eEEEEcCch
Confidence 999997654
No 23
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.03 E-value=1.2e-09 Score=79.20 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=54.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
+.+|||||||+|..++.+++..+ +++|+++| .++. +++++++|+.+. +. .++||+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~-~~-------~~~fDl 115 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEF-GQ-------EEKFDV 115 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhC-CC-------CCCccE
Confidence 57999999999999999999776 79999999 3453 499999999874 21 368999
Q ss_pred EEEcCCCcCCHHHHh
Q 042171 70 AFMDADKDNYCNYMR 84 (125)
Q Consensus 70 v~id~~~~~~~~~~~ 84 (125)
|++++. .++..+++
T Consensus 116 V~~~~~-~~~~~~l~ 129 (187)
T PRK00107 116 VTSRAV-ASLSDLVE 129 (187)
T ss_pred EEEccc-cCHHHHHH
Confidence 999763 34445555
No 24
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.02 E-value=1.8e-09 Score=71.43 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=50.8
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..+..+++..+ .++++++| .++ .+++++.+|+.+.++.. ..+||.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~D~ 91 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDS------LPEPDR 91 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhh------cCCCCE
Confidence 46899999999999999999987 59999999 223 47899999887544432 368999
Q ss_pred EEEcCCC
Q 042171 70 AFMDADK 76 (125)
Q Consensus 70 v~id~~~ 76 (125)
|+++...
T Consensus 92 v~~~~~~ 98 (124)
T TIGR02469 92 VFIGGSG 98 (124)
T ss_pred EEECCcc
Confidence 9986543
No 25
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.01 E-value=5.2e-09 Score=69.00 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=65.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
.+|||+|||+|..++.+++.. ..+++++| .++.++++++.+|..+..+.+ ..++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence 589999999999999999986 58999999 566788999999998886444 25889999
Q ss_pred EEcCCCcCCHHHHhhhC-CCCCCcchHHHHHHHHHHhhcCCCeEEEEee
Q 042171 71 FMDADKDNYCNYMREQV-PDHFRGSSKQAILDLNRSLVDDPCVQLSHVA 118 (125)
Q Consensus 71 ~id~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 118 (125)
+. +++|..... ..........-+++..+.|+.. +.-+.++|
T Consensus 75 v~------npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~~~ 116 (117)
T PF13659_consen 75 VT------NPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFITP 116 (117)
T ss_dssp EE--------STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred EE------CCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEEeC
Confidence 96 666654221 1111122344455555545433 44444443
No 26
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.00 E-value=6.9e-10 Score=82.85 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||||.++..+++.++++++|+++| .+. .+|+++++|+++. | + ++++||
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~l-p-~-----~d~sfD 118 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDL-P-F-----PDNSFD 118 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S------TT-EE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHh-c-C-----CCCcee
Confidence 457999999999999999999988789999999 234 4899999999876 5 3 268999
Q ss_pred EEEEcCCCcCCHH
Q 042171 69 YAFMDADKDNYCN 81 (125)
Q Consensus 69 ~v~id~~~~~~~~ 81 (125)
.|++....++.++
T Consensus 119 ~v~~~fglrn~~d 131 (233)
T PF01209_consen 119 AVTCSFGLRNFPD 131 (233)
T ss_dssp EEEEES-GGG-SS
T ss_pred EEEHHhhHHhhCC
Confidence 9999877666543
No 27
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.99 E-value=4e-10 Score=83.21 Aligned_cols=92 Identities=24% Similarity=0.263 Sum_probs=70.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
.+.+|.|+|||+|.+|-.|+++.| +++|+++| +....+++|.++|..++-| +.++|++|.++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p--------~~~~dllfaNA 100 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP--------EQPTDLLFANA 100 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC--------CCccchhhhhh
Confidence 578999999999999999999999 89999999 2233689999999998844 57899999987
Q ss_pred CCcC---CHHHHh-------------hhCCCCCCcchHHHHHHHHH
Q 042171 75 DKDN---YCNYMR-------------EQVPDHFRGSSKQAILDLNR 104 (125)
Q Consensus 75 ~~~~---~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 104 (125)
.... .+..|. ..+|++....++..|++..+
T Consensus 101 vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~ 146 (257)
T COG4106 101 VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETAD 146 (257)
T ss_pred hhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHh
Confidence 6443 233333 12466655557788887664
No 28
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.95 E-value=4.2e-09 Score=75.50 Aligned_cols=70 Identities=29% Similarity=0.327 Sum_probs=55.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|+.++.+++..+ +++|+++| .++ .+++++.+|+... + ..+||
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~---~------~~~~D 99 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIE---L------PGKAD 99 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhh---c------CcCCC
Confidence 457999999999999999999876 68999999 233 4699999987432 2 35799
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
+|++++....+..+++
T Consensus 100 ~v~~~~~~~~~~~~l~ 115 (187)
T PRK08287 100 AIFIGGSGGNLTAIID 115 (187)
T ss_pred EEEECCCccCHHHHHH
Confidence 9999877655666655
No 29
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.94 E-value=1.5e-08 Score=73.26 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=53.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||||||+|..+..+|+..| +++++++| .++ .+++++.+|+.+.++.+. +.+++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~----~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFF----PDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhC----CCCcee
Confidence 456899999999999999999987 78999999 345 489999999998755432 145899
Q ss_pred EEEEcC
Q 042171 69 YAFMDA 74 (125)
Q Consensus 69 ~v~id~ 74 (125)
.|+++.
T Consensus 90 ~v~~~~ 95 (194)
T TIGR00091 90 KVFLNF 95 (194)
T ss_pred EEEEEC
Confidence 999974
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.91 E-value=4.4e-09 Score=74.66 Aligned_cols=60 Identities=22% Similarity=0.407 Sum_probs=50.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..++++++..+ ..+|+++| .++.. ++++.+|..+.++ ..+||
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--------~~~fD 100 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--------DGKFD 100 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--------TTCEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--------cccee
Confidence 467999999999999999999887 67899999 45544 9999999876533 47899
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
+|+++
T Consensus 101 ~Iv~N 105 (170)
T PF05175_consen 101 LIVSN 105 (170)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 99985
No 31
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.91 E-value=5.7e-09 Score=81.35 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=56.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|+.++.+++..+..++|+++| .++ ++++++++|+.+.++. ..+||
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~-------~~~fD 151 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE-------FAPYD 151 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc-------cCCcc
Confidence 346999999999999999999887568999999 234 5799999998776443 36799
Q ss_pred EEEEcCCCcCCHHH
Q 042171 69 YAFMDADKDNYCNY 82 (125)
Q Consensus 69 ~v~id~~~~~~~~~ 82 (125)
+|++++...+.+..
T Consensus 152 ~Ii~~~g~~~ip~~ 165 (322)
T PRK13943 152 VIFVTVGVDEVPET 165 (322)
T ss_pred EEEECCchHHhHHH
Confidence 99998876665543
No 32
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.91 E-value=4.6e-09 Score=77.21 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=53.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..+..+++.++++++|+++| .++ ++++++.+|+.+. + + +.++||
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-----~~~~fD 116 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-F-----DDNSFD 116 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-C-----CCCCcc
Confidence 356999999999999999999987678999999 233 5799999999764 3 2 147899
Q ss_pred EEEEcCCCcCC
Q 042171 69 YAFMDADKDNY 79 (125)
Q Consensus 69 ~v~id~~~~~~ 79 (125)
+|++....++.
T Consensus 117 ~V~~~~~l~~~ 127 (231)
T TIGR02752 117 YVTIGFGLRNV 127 (231)
T ss_pred EEEEecccccC
Confidence 99987654443
No 33
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.6e-08 Score=76.12 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||.|+|+|..|.+||+++.+.|+|+++| +++.++|++..+|..+... .+.||
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~vD 165 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--------EEDVD 165 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------ccccC
Confidence 456999999999999999999998889999999 6888889999999988743 35899
Q ss_pred EEEEcCCC
Q 042171 69 YAFMDADK 76 (125)
Q Consensus 69 ~v~id~~~ 76 (125)
.||+|...
T Consensus 166 av~LDmp~ 173 (256)
T COG2519 166 AVFLDLPD 173 (256)
T ss_pred EEEEcCCC
Confidence 99998765
No 34
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.89 E-value=6.2e-09 Score=79.67 Aligned_cols=61 Identities=16% Similarity=0.419 Sum_probs=51.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||+|..++.+++..+ +.+|+++| .++.++++++.+|+.+.++ ..+||
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--------~~~fD 191 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--------GRKYD 191 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------CCCcc
Confidence 357899999999999999999887 78999999 3566789999999875432 35799
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
+|+++
T Consensus 192 ~Iv~N 196 (284)
T TIGR03533 192 LIVSN 196 (284)
T ss_pred EEEEC
Confidence 99985
No 35
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=1.1e-08 Score=76.76 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||+|..+.++++. +.+|+++| .++.++++++++|+.+..+.. .++||
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD 114 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVD 114 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCC
Confidence 4679999999999999999985 57999999 345578999999998864332 47899
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+|++...
T Consensus 115 ~V~~~~v 121 (255)
T PRK11036 115 LILFHAV 121 (255)
T ss_pred EEEehhH
Confidence 9998644
No 36
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.86 E-value=1.8e-08 Score=73.42 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||||||+|..+..+++..| +.+++++| .++ ++++++.+|+.+.++... +.++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc----Cccccc
Confidence 467899999999999999999876 68999999 234 679999999954445321 246899
Q ss_pred EEEEcC
Q 042171 69 YAFMDA 74 (125)
Q Consensus 69 ~v~id~ 74 (125)
.|++..
T Consensus 114 ~V~~~~ 119 (202)
T PRK00121 114 RIYLNF 119 (202)
T ss_pred eEEEEC
Confidence 999853
No 37
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.85 E-value=1.1e-08 Score=77.01 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHH-HHHHHhhcCCCCCcee
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALS-VLDQLLKDSENEVNFD 68 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~-~l~~~~~~~~~~~~fD 68 (125)
..+|||.|||+|..|.+|++++.+.|+|++.| .++.++|++.++|..+ .++.- .+..+|
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~-----~~~~~D 115 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE-----LESDFD 115 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT------TTSEE
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc-----ccCccc
Confidence 46999999999999999999998899999999 7888899999999964 32210 136799
Q ss_pred EEEEcCCCcC
Q 042171 69 YAFMDADKDN 78 (125)
Q Consensus 69 ~v~id~~~~~ 78 (125)
.||+|-..++
T Consensus 116 avfLDlp~Pw 125 (247)
T PF08704_consen 116 AVFLDLPDPW 125 (247)
T ss_dssp EEEEESSSGG
T ss_pred EEEEeCCCHH
Confidence 9999987643
No 38
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.85 E-value=9.8e-09 Score=74.93 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=54.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|+++..+++.. ++++++| .++ .+++++.+|+.+.++. .++||
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~~fD 146 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGWPA-------YAPFD 146 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCCCc-------CCCcC
Confidence 45699999999999999988874 5899999 234 3599999998665432 37899
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
+|++++....++..+.
T Consensus 147 ~I~~~~~~~~~~~~l~ 162 (212)
T PRK00312 147 RILVTAAAPEIPRALL 162 (212)
T ss_pred EEEEccCchhhhHHHH
Confidence 9999988766665444
No 39
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=4.3e-09 Score=80.57 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=51.5
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
+|||+|||||+.++.+++..+ ..+|+++| .++ .++.++.+|+.+- + .++||+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~---~------~~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP---L------RGKFDLIV 181 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc---c------CCceeEEE
Confidence 799999999999999999998 69999999 455 6777777766544 3 35899999
Q ss_pred EcCCCcCCHHHHhhh
Q 042171 72 MDADKDNYCNYMREQ 86 (125)
Q Consensus 72 id~~~~~~~~~~~~~ 86 (125)
+ +|+|++..
T Consensus 182 s------NPPYip~~ 190 (280)
T COG2890 182 S------NPPYIPAE 190 (280)
T ss_pred e------CCCCCCCc
Confidence 6 78887743
No 40
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.84 E-value=6.6e-09 Score=85.29 Aligned_cols=60 Identities=20% Similarity=0.391 Sum_probs=50.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
+.+|||+|||+|+.++.+++..+ +.+|+++| .++.++++++++|+.+.++ .++||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl 209 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF 209 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence 46899999999999999999887 78999999 4566789999999875432 357999
Q ss_pred EEEc
Q 042171 70 AFMD 73 (125)
Q Consensus 70 v~id 73 (125)
|+++
T Consensus 210 IvsN 213 (506)
T PRK01544 210 IVSN 213 (506)
T ss_pred EEEC
Confidence 9973
No 41
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.83 E-value=2.9e-08 Score=75.02 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=52.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C----C-----CCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A----R-----VDHKINFIESEALSVLDQLLKDSENEVN 66 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~----~-----~~~~i~~~~gd~~~~l~~~~~~~~~~~~ 66 (125)
+..+|||+|||+|..+..+++..++.++|+++| + . ..++++++++|+.+. | + ++++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~s 145 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F-----DDCY 145 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----CCCC
Confidence 356899999999999999999876578999999 1 1 124799999998764 4 2 2578
Q ss_pred eeEEEEcCCCcC
Q 042171 67 FDYAFMDADKDN 78 (125)
Q Consensus 67 fD~v~id~~~~~ 78 (125)
||+|++....++
T Consensus 146 fD~V~~~~~l~~ 157 (261)
T PLN02233 146 FDAITMGYGLRN 157 (261)
T ss_pred EeEEEEeccccc
Confidence 999998655443
No 42
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.83 E-value=1.9e-08 Score=73.90 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C---CCCCcEEEEecchHHH--HHHHhhcCCCCCceeEEEEcCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A---RVDHKINFIESEALSV--LDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~---~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
+..+|||||||+|.++..+++..++.++|++|| . +. .+++++++|+.+. ++.+.... ..++||+|++|...
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~-~~v~~i~~D~~~~~~~~~i~~~~-~~~~~D~V~S~~~~ 127 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI-VGVDFLQGDFRDELVLKALLERV-GDSKVQVVMSDMAP 127 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC-CCcEEEecCCCChHHHHHHHHHh-CCCCCCEEecCCCC
Confidence 456899999999999999999987678999999 2 33 4689999998863 33221110 25789999998754
No 43
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.81 E-value=1.5e-08 Score=78.46 Aligned_cols=59 Identities=19% Similarity=0.428 Sum_probs=50.2
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
.+|||+|||+|+.++.+++..| +.+|+++| .++.++++++++|+.+.++ ..+||+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlI 205 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLI 205 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEE
Confidence 6899999999999999999887 78999999 3566789999999876543 3579999
Q ss_pred EEc
Q 042171 71 FMD 73 (125)
Q Consensus 71 ~id 73 (125)
+++
T Consensus 206 vsN 208 (307)
T PRK11805 206 VSN 208 (307)
T ss_pred EEC
Confidence 985
No 44
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.80 E-value=1.2e-08 Score=77.94 Aligned_cols=59 Identities=20% Similarity=0.455 Sum_probs=49.3
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
.+|||+|||+|+.++.+++..+ +.+|+++| .++.++++++++|+.+.++ ..+||+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--------~~~fDlI 186 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--------GQKIDII 186 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--------CCCccEE
Confidence 6899999999999999999887 68999999 3555679999999876432 2479999
Q ss_pred EEc
Q 042171 71 FMD 73 (125)
Q Consensus 71 ~id 73 (125)
+++
T Consensus 187 vsN 189 (284)
T TIGR00536 187 VSN 189 (284)
T ss_pred EEC
Confidence 974
No 45
>PRK00811 spermidine synthase; Provisional
Probab=98.79 E-value=3.7e-08 Score=75.38 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CCC--CCcEEEEecchHHHHHHHhhcCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------ARV--DHKINFIESEALSVLDQLLKDSEN 63 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~~--~~~i~~~~gd~~~~l~~~~~~~~~ 63 (125)
.++++||+||||.|..+.++++..+ ..+|+++| .+. .+|++++.+|+.+.++..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------ 147 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------ 147 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------
Confidence 4688999999999999999987533 57899999 122 468999999999987642
Q ss_pred CCceeEEEEcCCC
Q 042171 64 EVNFDYAFMDADK 76 (125)
Q Consensus 64 ~~~fD~v~id~~~ 76 (125)
.++||+|++|...
T Consensus 148 ~~~yDvIi~D~~d 160 (283)
T PRK00811 148 ENSFDVIIVDSTD 160 (283)
T ss_pred CCcccEEEECCCC
Confidence 4789999999754
No 46
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.77 E-value=1.8e-08 Score=75.35 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
+..+|||||||+|..+..+++..+ +++|+++| .....+++++.+|+.+..+ ..+||+|++..
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~--------~~~fD~v~~~~ 101 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQP--------PQALDLIFANA 101 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCC--------CCCccEEEEcc
Confidence 457999999999999999999887 78999999 1122568899999875522 36899999986
Q ss_pred CCc
Q 042171 75 DKD 77 (125)
Q Consensus 75 ~~~ 77 (125)
..+
T Consensus 102 ~l~ 104 (258)
T PRK01683 102 SLQ 104 (258)
T ss_pred Chh
Confidence 643
No 47
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.76 E-value=5.6e-08 Score=70.20 Aligned_cols=72 Identities=24% Similarity=0.276 Sum_probs=54.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..++++++..+ +++|+++| .++ ++++++.+|+.+.++.+ ...+|
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~------~~~~d 111 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQL------APAPD 111 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhC------CCCCC
Confidence 346899999999999999998766 68999999 234 57999999998765543 24578
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
.+++++.. ....+++
T Consensus 112 ~v~~~~~~-~~~~~l~ 126 (196)
T PRK07402 112 RVCIEGGR-PIKEILQ 126 (196)
T ss_pred EEEEECCc-CHHHHHH
Confidence 89988643 3345555
No 48
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.76 E-value=1.1e-08 Score=76.74 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=51.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
++.+|||||||+|..+..+++..| +++|+++| ..-..+++++.+|+.+..+ .++||+|++....
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~--------~~~fD~v~~~~~l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDVRDWKP--------KPDTDVVVSNAAL 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCC--------CCCceEEEEehhh
Confidence 467999999999999999999886 78999999 1112468899999875521 4689999997654
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.76 E-value=1.6e-08 Score=74.03 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
++.+|||||||+|+.+..+++..+ +.+++++| + ....+++++++|+.+ |. ..++||+|++.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~--~~------~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD--PF------KDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC--CC------CCCCEEEEEECC
Confidence 567899999999999999999876 68999999 1 112457888998876 32 257899999877
Q ss_pred CC
Q 042171 75 DK 76 (125)
Q Consensus 75 ~~ 76 (125)
..
T Consensus 114 vL 115 (204)
T TIGR03587 114 VL 115 (204)
T ss_pred hh
Confidence 64
No 50
>PLN02244 tocopherol O-methyltransferase
Probab=98.75 E-value=2e-08 Score=78.59 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=52.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||||||+|..+..+++.. +++|+++| .++.++++++.+|+.+. | + .+++||
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~-----~~~~FD 188 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-F-----EDGQFD 188 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-C-----CCCCcc
Confidence 46799999999999999999976 57999999 35667899999999764 3 2 257899
Q ss_pred EEEEcCCC
Q 042171 69 YAFMDADK 76 (125)
Q Consensus 69 ~v~id~~~ 76 (125)
+|++....
T Consensus 189 ~V~s~~~~ 196 (340)
T PLN02244 189 LVWSMESG 196 (340)
T ss_pred EEEECCch
Confidence 99985543
No 51
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.72 E-value=4.2e-08 Score=79.20 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=53.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..|+.+++.++++++|+++| .++ .+++++++|+.+..+.+ .++||
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~------~~~fD 322 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-TNIETKALDARKVHEKF------AEKFD 322 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCCcccccchh------cccCC
Confidence 346899999999999999999886579999999 355 35999999998764333 36799
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+|++|+.
T Consensus 323 ~Vl~D~P 329 (444)
T PRK14902 323 KILVDAP 329 (444)
T ss_pred EEEEcCC
Confidence 9999974
No 52
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.71 E-value=8.7e-08 Score=76.61 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=52.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
+.++|||+|||+|.+++.++.. + ..+|+++| .++. ++++++++|+.+.++.+... ..+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CCCC
Confidence 4679999999999999876643 2 46999999 4564 48999999999988765321 3589
Q ss_pred eEEEEcCC
Q 042171 68 DYAFMDAD 75 (125)
Q Consensus 68 D~v~id~~ 75 (125)
|+|++|..
T Consensus 295 DlVilDPP 302 (396)
T PRK15128 295 DVIVMDPP 302 (396)
T ss_pred CEEEECCC
Confidence 99999854
No 53
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.71 E-value=1.6e-07 Score=73.34 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||||||+|..+..+++. +++|++|| .+...+++++.+++.+. +.. .++||+
T Consensus 132 g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~------~~~FD~ 201 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADE------GRKFDA 201 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hhc------cCCCCE
Confidence 458999999999999999863 68999999 12335899999999765 321 478999
Q ss_pred EEEcC
Q 042171 70 AFMDA 74 (125)
Q Consensus 70 v~id~ 74 (125)
|++-.
T Consensus 202 Vi~~~ 206 (322)
T PLN02396 202 VLSLE 206 (322)
T ss_pred EEEhh
Confidence 99743
No 54
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=8.4e-08 Score=77.40 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=53.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..|+.+++.++++++|+++| .++ .+++++.+|+.+..... .++||
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~~~~------~~~fD 309 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLTEYV------QDTFD 309 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhhhhh------hccCC
Confidence 346899999999999999999987679999999 455 46899999998652222 36799
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
.|++|+.
T Consensus 310 ~Vl~DaP 316 (431)
T PRK14903 310 RILVDAP 316 (431)
T ss_pred EEEECCC
Confidence 9999864
No 55
>PTZ00146 fibrillarin; Provisional
Probab=98.69 E-value=7.7e-08 Score=74.07 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=53.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
..+|||+|||+|+++..+++.+++.++|+++| +....+|.++.+|+..... +.. ..++||+||+
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~-y~~---~~~~vDvV~~ 208 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK-YRM---LVPMVDVIFA 208 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh-hhc---ccCCCCEEEE
Confidence 35899999999999999999998789999999 1222578999999864211 100 1357999999
Q ss_pred cCCCcCC
Q 042171 73 DADKDNY 79 (125)
Q Consensus 73 d~~~~~~ 79 (125)
|....+.
T Consensus 209 Dva~pdq 215 (293)
T PTZ00146 209 DVAQPDQ 215 (293)
T ss_pred eCCCcch
Confidence 9975443
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.68 E-value=9.5e-08 Score=61.85 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=44.1
Q ss_pred EEEEcCcccHHHHHHHhhCCC--CCEEEEEe------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 8 TIEIGVFTGYSLFLTALTIPE--DGQITAID------------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~~--~~~v~~iD------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
|||+|||+|..+..+++.++. ..+++++| . ....+++++++|+.++ +.. .++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-~~~------~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-PFS------DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-HHH------SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-ccc------CCCeeEEEE
Confidence 799999999999999998832 37999999 1 1123899999999875 443 579999998
No 57
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=6.2e-08 Score=78.31 Aligned_cols=61 Identities=28% Similarity=0.279 Sum_probs=51.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..|+.+++.++..++|+++| .++ ++|+++.+|+.+..+ ..+||.
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~--------~~~fD~ 321 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSP--------EEQPDA 321 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCccccccc--------CCCCCE
Confidence 46899999999999999999887678999999 455 479999999976532 468999
Q ss_pred EEEcC
Q 042171 70 AFMDA 74 (125)
Q Consensus 70 v~id~ 74 (125)
|++|+
T Consensus 322 Vl~D~ 326 (445)
T PRK14904 322 ILLDA 326 (445)
T ss_pred EEEcC
Confidence 99985
No 58
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.67 E-value=1.2e-07 Score=75.49 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=47.7
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC--CCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV--DHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~--~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
.+|||+|||+|..++.+++..| +.+|+++| .+. ..+++++.+|+.+.++ ..+||
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~fD 300 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRFN 300 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCEE
Confidence 5899999999999999999987 79999999 122 1378999998865422 35799
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
+|+++
T Consensus 301 lIlsN 305 (378)
T PRK15001 301 AVLCN 305 (378)
T ss_pred EEEEC
Confidence 99985
No 59
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.67 E-value=1.5e-07 Score=68.90 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..++.++... ..+|+++| .++ ++++++.+|+.+.++.. ..+||
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~------~~~fD 123 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQP------GTPHN 123 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhc------CCCce
Confidence 35699999999999999754433 36899999 344 47999999998876532 35799
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+||+|-.
T Consensus 124 lV~~DPP 130 (199)
T PRK10909 124 VVFVDPP 130 (199)
T ss_pred EEEECCC
Confidence 9999866
No 60
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.66 E-value=1.2e-07 Score=73.46 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||+|..++.+|+. ..+|+++| .++ ++++++.+|+.+..+.. .++||
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~D 242 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVPD 242 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCCe
Confidence 4679999999999999999984 57899999 355 68999999998875432 35799
Q ss_pred EEEEcCCC
Q 042171 69 YAFMDADK 76 (125)
Q Consensus 69 ~v~id~~~ 76 (125)
+|++|-..
T Consensus 243 ~Vv~dPPr 250 (315)
T PRK03522 243 LVLVNPPR 250 (315)
T ss_pred EEEECCCC
Confidence 99998543
No 61
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.65 E-value=1e-07 Score=70.53 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||+|..++.+++..+ +.+++++| .++ ++++++.+|+.+.++ .++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~~~fD 156 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLP--------GGKFD 156 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCc--------CCcee
Confidence 345899999999999999999887 68999999 344 479999999876432 47899
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
+|+++
T Consensus 157 ~Vi~n 161 (251)
T TIGR03534 157 LIVSN 161 (251)
T ss_pred EEEEC
Confidence 99985
No 62
>PLN02366 spermidine synthase
Probab=98.65 E-value=2.2e-07 Score=72.13 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------C-----CC-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------A-----RV-DHKINFIESEALSVLDQLLKDSENE 64 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~-----~~-~~~i~~~~gd~~~~l~~~~~~~~~~ 64 (125)
.++++||+||||.|..+.++++. ++..+|+.+| . ++ .+|++++.+|+.+.+... +.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~~ 163 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----PE 163 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----cC
Confidence 46899999999999999999886 4357899999 1 12 358999999999887643 13
Q ss_pred CceeEEEEcCCCc
Q 042171 65 VNFDYAFMDADKD 77 (125)
Q Consensus 65 ~~fD~v~id~~~~ 77 (125)
++||+|++|+..+
T Consensus 164 ~~yDvIi~D~~dp 176 (308)
T PLN02366 164 GTYDAIIVDSSDP 176 (308)
T ss_pred CCCCEEEEcCCCC
Confidence 6799999998764
No 63
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.64 E-value=1.5e-07 Score=75.01 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=52.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
...+||||||+|..++.+|+..| +..++++| .++ .++.++.+|+.+.+..+ +++++|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~-----~~~s~D~ 195 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELL-----PSNSVEK 195 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhC-----CCCceeE
Confidence 35899999999999999999997 79999999 345 57999999998765544 2578999
Q ss_pred EEEcC
Q 042171 70 AFMDA 74 (125)
Q Consensus 70 v~id~ 74 (125)
|++..
T Consensus 196 I~lnF 200 (390)
T PRK14121 196 IFVHF 200 (390)
T ss_pred EEEeC
Confidence 99843
No 64
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.64 E-value=1.6e-07 Score=71.10 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..|+.+++.+++.++|+++| .++ .+|+++.+|+... +.. ..+||.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~-~~~------~~~fD~ 143 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVF-GAA------VPKFDA 143 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHh-hhh------ccCCCE
Confidence 46899999999999999999987678999999 445 4699999998765 222 356999
Q ss_pred EEEcCC
Q 042171 70 AFMDAD 75 (125)
Q Consensus 70 v~id~~ 75 (125)
|++|+.
T Consensus 144 Vl~D~P 149 (264)
T TIGR00446 144 ILLDAP 149 (264)
T ss_pred EEEcCC
Confidence 999964
No 65
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.64 E-value=1.3e-07 Score=80.43 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=52.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
+.++|||+|||+|..+++++++ + ..+|+++| .++. ++++++++|+.+.++.+ ..+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~f 609 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQF 609 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCc
Confidence 4689999999999999999985 2 34799999 4564 58999999999887654 3689
Q ss_pred eEEEEcCC
Q 042171 68 DYAFMDAD 75 (125)
Q Consensus 68 D~v~id~~ 75 (125)
|+|++|-.
T Consensus 610 DlIilDPP 617 (702)
T PRK11783 610 DLIFIDPP 617 (702)
T ss_pred CEEEECCC
Confidence 99999843
No 66
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.63 E-value=7.2e-08 Score=70.34 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
++.+|||||||+|.++..+++..+ ..+++++| ....++++++.+|..+. + + ..++||+|++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~vi~~ 105 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL-P-L-----EDSSFDLIVSN 105 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC-C-C-----CCCceeEEEEh
Confidence 457999999999999999999886 68899999 22335789999998765 2 1 15789999987
Q ss_pred CCC
Q 042171 74 ADK 76 (125)
Q Consensus 74 ~~~ 76 (125)
...
T Consensus 106 ~~l 108 (240)
T TIGR02072 106 LAL 108 (240)
T ss_pred hhh
Confidence 543
No 67
>PRK01581 speE spermidine synthase; Validated
Probab=98.62 E-value=2.6e-07 Score=73.18 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------C-----------CC-CCcEEEEecchHHHHHHHhhcC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------A-----------RV-DHKINFIESEALSVLDQLLKDS 61 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~-----------~~-~~~i~~~~gd~~~~l~~~~~~~ 61 (125)
.+|++||+||||+|+.+..+++. ++..+|+++| . .+ .+|++++.+|+.+.++..
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---- 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---- 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc----
Confidence 57899999999999988888875 3368999999 1 11 469999999999987653
Q ss_pred CCCCceeEEEEcCCC
Q 042171 62 ENEVNFDYAFMDADK 76 (125)
Q Consensus 62 ~~~~~fD~v~id~~~ 76 (125)
.++||+|++|...
T Consensus 224 --~~~YDVIIvDl~D 236 (374)
T PRK01581 224 --SSLYDVIIIDFPD 236 (374)
T ss_pred --CCCccEEEEcCCC
Confidence 4689999999653
No 68
>PRK04266 fibrillarin; Provisional
Probab=98.61 E-value=1.3e-07 Score=70.35 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHH--HHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVL--DQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l--~~~~~~~~~~~~fD~ 69 (125)
+..+|||+|||+|+.++.+++.++ .++|+++| +.-..+|.++.+|+.+.. ..+ .++||+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l------~~~~D~ 144 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV------VEKVDV 144 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc------cccCCE
Confidence 345999999999999999999997 78999999 111257899999986421 112 356999
Q ss_pred EEEcCCC
Q 042171 70 AFMDADK 76 (125)
Q Consensus 70 v~id~~~ 76 (125)
||+|...
T Consensus 145 i~~d~~~ 151 (226)
T PRK04266 145 IYQDVAQ 151 (226)
T ss_pred EEECCCC
Confidence 9998654
No 69
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=1.7e-07 Score=71.84 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=58.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||.|..++++|+.. +.+|++++ .|+..+|+++..|..+. .++||
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----------~e~fD 139 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----------EEPFD 139 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----------ccccc
Confidence 45699999999999999999998 69999999 67878999999988765 35699
Q ss_pred EEEEcC-----CCcCCHHHHh
Q 042171 69 YAFMDA-----DKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~-----~~~~~~~~~~ 84 (125)
-|++=+ .+++|+.||+
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~ 160 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFK 160 (283)
T ss_pred eeeehhhHHHhCcccHHHHHH
Confidence 999743 3567888988
No 70
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.60 E-value=5.4e-08 Score=74.22 Aligned_cols=69 Identities=26% Similarity=0.323 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEE----ecchHHHHHHHhhcCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFI----ESEALSVLDQLLKDSEN 63 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~----~gd~~~~l~~~~~~~~~ 63 (125)
.++..+||+|||+|+.++.|++.+| +++++||| .++..++.++ ++|+.+..+.+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~------ 219 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLL------ 219 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccc------
Confidence 3556899999999999999999999 89999999 5567788887 45554443322
Q ss_pred CCceeEEEEcCCCcCCHHHHh
Q 042171 64 EVNFDYAFMDADKDNYCNYMR 84 (125)
Q Consensus 64 ~~~fD~v~id~~~~~~~~~~~ 84 (125)
.+++|++++ +|+|+.
T Consensus 220 ~~~~dllvs------NPPYI~ 234 (328)
T KOG2904|consen 220 EGKIDLLVS------NPPYIR 234 (328)
T ss_pred cCceeEEec------CCCccc
Confidence 588999995 777766
No 71
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.60 E-value=1e-07 Score=69.79 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=48.6
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
++|||||||+|..+..+++..+ +.+++++| .++.++++++.+|..+. + + .++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence 4799999999999999999886 68999999 45677899999998644 2 1 3579999
Q ss_pred EEc
Q 042171 71 FMD 73 (125)
Q Consensus 71 ~id 73 (125)
++.
T Consensus 72 ~~~ 74 (224)
T smart00828 72 FGF 74 (224)
T ss_pred ehH
Confidence 964
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.60 E-value=1.6e-07 Score=71.65 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||||||.|..++++|+.. +.+|++|. .|+.+++++...|..+. ..+||
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~~fD 129 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------PGKFD 129 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------------S-S
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------CCCCC
Confidence 34699999999999999999987 58999999 78888999999998754 35899
Q ss_pred EEEEcC-----CCcCCHHHHh
Q 042171 69 YAFMDA-----DKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~-----~~~~~~~~~~ 84 (125)
.|++=. .+++|+.||+
T Consensus 130 ~IvSi~~~Ehvg~~~~~~~f~ 150 (273)
T PF02353_consen 130 RIVSIEMFEHVGRKNYPAFFR 150 (273)
T ss_dssp EEEEESEGGGTCGGGHHHHHH
T ss_pred EEEEEechhhcChhHHHHHHH
Confidence 988632 2346677887
No 73
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.59 E-value=7.4e-07 Score=67.25 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=50.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||||||+|..++.+++.+++.++|+++| .++ ++++++.+|..+. + + .+++||
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l-~-~-----~~~~fD 148 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEAL-P-V-----ADNSVD 148 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhC-C-C-----CCCcee
Confidence 456999999999999999898877678999999 234 5899999998654 3 2 146899
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+|+++..
T Consensus 149 ~Vi~~~v 155 (272)
T PRK11873 149 VIISNCV 155 (272)
T ss_pred EEEEcCc
Confidence 9998754
No 74
>PRK06922 hypothetical protein; Provisional
Probab=98.57 E-value=4.3e-07 Score=76.36 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHH-HhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQ-LLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~-~~~~~~~~~~fD~ 69 (125)
+..+|||||||+|..+..+++..| +++++++| .....++.++.+|+.+. |. + +.++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL-p~~f-----edeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL-SSSF-----EKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-cccc-----CCCCEEE
Confidence 457999999999999999999887 79999999 11224688899999864 42 3 2578999
Q ss_pred EEEcC
Q 042171 70 AFMDA 74 (125)
Q Consensus 70 v~id~ 74 (125)
|++..
T Consensus 491 VVsn~ 495 (677)
T PRK06922 491 IVYSS 495 (677)
T ss_pred EEEch
Confidence 99754
No 75
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.56 E-value=1.1e-07 Score=76.36 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=48.2
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
..+|||+|||+|..++.+++..+ +.+++++| .....+++++++|..+.. +. ...+||+|+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--l~----~~~~FDLIV 324 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--MP----SEGKWDIIV 324 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--cc----cCCCccEEE
Confidence 45899999999999999998876 78999999 123347999999986531 10 135799999
Q ss_pred Ec
Q 042171 72 MD 73 (125)
Q Consensus 72 id 73 (125)
++
T Consensus 325 SN 326 (423)
T PRK14966 325 SN 326 (423)
T ss_pred EC
Confidence 84
No 76
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.56 E-value=2e-07 Score=67.60 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=46.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||+|..+++||+. +.+|+++| .++ .+++++.+|..+. + + .++||
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~------~~~fD 97 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNL-T-F------DGEYD 97 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhC-C-c------CCCcC
Confidence 4579999999999999999985 57999999 233 4588888887654 2 2 35799
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+|++...
T Consensus 98 ~I~~~~~ 104 (197)
T PRK11207 98 FILSTVV 104 (197)
T ss_pred EEEEecc
Confidence 9997544
No 77
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=2.3e-07 Score=74.82 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=52.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..|+.+++.+++.++|+++| .|+ .+|+++.+|+.+....... ..++||.
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~---~~~~fD~ 328 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQ---WRGYFDR 328 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhccccccc---ccccCCE
Confidence 46899999999999999999987678999999 455 4699999999865321100 1367999
Q ss_pred EEEcCC
Q 042171 70 AFMDAD 75 (125)
Q Consensus 70 v~id~~ 75 (125)
|++|+.
T Consensus 329 Vl~DaP 334 (434)
T PRK14901 329 ILLDAP 334 (434)
T ss_pred EEEeCC
Confidence 999964
No 78
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.55 E-value=3.1e-07 Score=68.74 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=48.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
...+|||||||+|..++.+++.+ .++++++++| .+...+++++++|+.+. + ...+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~ 126 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IENA 126 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-C--------CCCC
Confidence 45689999999999999999864 2478999999 24556899999998765 2 2458
Q ss_pred eEEEEcC
Q 042171 68 DYAFMDA 74 (125)
Q Consensus 68 D~v~id~ 74 (125)
|+|++..
T Consensus 127 D~vv~~~ 133 (247)
T PRK15451 127 SMVVLNF 133 (247)
T ss_pred CEEehhh
Confidence 9988753
No 79
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.55 E-value=2.8e-07 Score=71.89 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=52.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C-CCCCcEEEEe-cchHHHHHHHhhcCCCCCce
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A-RVDHKINFIE-SEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~-~~~~~i~~~~-gd~~~~l~~~~~~~~~~~~f 67 (125)
..++||||||+|.....++...+ +.+++++| . ++.++|+++. .+..+.+..+.. ..+.|
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~f 190 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNERF 190 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCce
Confidence 46899999999999999988776 68999999 4 5778898864 455444332211 14689
Q ss_pred eEEEEcCCCcCCHHHHh
Q 042171 68 DYAFMDADKDNYCNYMR 84 (125)
Q Consensus 68 D~v~id~~~~~~~~~~~ 84 (125)
|+|++ +|+|+.
T Consensus 191 Dlivc------NPPf~~ 201 (321)
T PRK11727 191 DATLC------NPPFHA 201 (321)
T ss_pred EEEEe------CCCCcC
Confidence 99997 777776
No 80
>PLN02672 methionine S-methyltransferase
Probab=98.55 E-value=1.8e-07 Score=82.36 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=53.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCC---------------CCcEEEEecchHHHH
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARV---------------DHKINFIESEALSVL 54 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~---------------~~~i~~~~gd~~~~l 54 (125)
..+|||+|||+|+.++.+++..+ .++|+++| .++ .++++++++|+.+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999999987 68999999 111 257999999998765
Q ss_pred HHHhhcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171 55 DQLLKDSENEVNFDYAFMDADKDNYCNYMR 84 (125)
Q Consensus 55 ~~~~~~~~~~~~fD~v~id~~~~~~~~~~~ 84 (125)
+.. ..+||+|++ +|+|+.
T Consensus 198 ~~~------~~~fDlIVS------NPPYI~ 215 (1082)
T PLN02672 198 RDN------NIELDRIVG------CIPQIL 215 (1082)
T ss_pred ccc------CCceEEEEE------CCCcCC
Confidence 321 237999996 666665
No 81
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.55 E-value=9.7e-07 Score=68.77 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=47.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+.++|||||||+|+.+..|++.- ..+|+++| .+...+++++.+++.+. |. .++||
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~FD 191 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAFD 191 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCcC
Confidence 46799999999999999999873 35799999 12235799999988755 32 36799
Q ss_pred EEEEcC
Q 042171 69 YAFMDA 74 (125)
Q Consensus 69 ~v~id~ 74 (125)
+|++-+
T Consensus 192 ~V~s~~ 197 (322)
T PRK15068 192 TVFSMG 197 (322)
T ss_pred EEEECC
Confidence 999743
No 82
>PHA03412 putative methyltransferase; Provisional
Probab=98.55 E-value=3.7e-07 Score=68.50 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=52.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC--CCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIP--EDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~--~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
..+|||+|||+|..++.+++.++ +..+|+++| .....++.++.+|..+. + + ..+||+|++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~-~-~------~~~FDlIIs- 120 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTT-E-F------DTLFDMAIS- 120 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcc-c-c------cCCccEEEE-
Confidence 56999999999999999998763 357999999 11224688999998754 1 2 368999996
Q ss_pred CCCcCCHHHHhhh
Q 042171 74 ADKDNYCNYMREQ 86 (125)
Q Consensus 74 ~~~~~~~~~~~~~ 86 (125)
+|+|+...
T Consensus 121 -----NPPY~~~~ 128 (241)
T PHA03412 121 -----NPPFGKIK 128 (241)
T ss_pred -----CCCCCCcc
Confidence 88888744
No 83
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.53 E-value=2.9e-07 Score=69.21 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=49.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
++.+|||+|||+|..++.+++..+ ..+++++| . ....+++++.+|+.+.++ .++||+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--------~~~fD~ 178 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--------GGRFDL 178 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--------CCceeE
Confidence 456899999999999999999987 78999999 1 344689999999854322 368999
Q ss_pred EEEc
Q 042171 70 AFMD 73 (125)
Q Consensus 70 v~id 73 (125)
|+++
T Consensus 179 Iv~n 182 (275)
T PRK09328 179 IVSN 182 (275)
T ss_pred EEEC
Confidence 9974
No 84
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.52 E-value=5.2e-07 Score=63.73 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=47.8
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
..+|||||||+|..+..+++. .++++++| ....++++++++|+.+.... ..+||.|+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~-------~~~~d~vi~ 83 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP-------KLQPYKVVG 83 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc-------ccCCCEEEE
Confidence 458999999999999999987 47899999 11135899999999876321 346999998
Q ss_pred cCC
Q 042171 73 DAD 75 (125)
Q Consensus 73 d~~ 75 (125)
+-.
T Consensus 84 n~P 86 (169)
T smart00650 84 NLP 86 (169)
T ss_pred CCC
Confidence 644
No 85
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.50 E-value=2.8e-07 Score=57.72 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=44.0
Q ss_pred EEEcCcccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171 9 IEIGVFTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 9 LeiG~g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
||+|||+|..+..+++. + ..+++++| .....++.++.+|..+. | + ++++||+|++-..
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~-----~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-P-F-----PDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-S-S------TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-c-c-----ccccccccccccc
Confidence 89999999999999998 4 79999999 12235577999998876 4 2 2689999997433
No 86
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.49 E-value=5.2e-07 Score=66.02 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=45.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|..+..+++. ..+++++| .+..++++++.+|. +.. .++||
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~------~~~fD 129 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL----ESL------LGRFD 129 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc----hhc------cCCcC
Confidence 4569999999999999999876 45699999 23435799999983 222 47899
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+|++...
T Consensus 130 ~v~~~~~ 136 (230)
T PRK07580 130 TVVCLDV 136 (230)
T ss_pred EEEEcch
Confidence 9998544
No 87
>PRK06202 hypothetical protein; Provisional
Probab=98.49 E-value=2e-07 Score=68.92 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC---CCCEEEEEe----------CCC-CCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIP---EDGQITAID----------ARV-DHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~---~~~~v~~iD----------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
++.+|||||||+|..+..|++..+ .+.+|+++| ... ..++++..+++.+. +. ..++||+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l-~~------~~~~fD~ 132 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDEL-VA------EGERFDV 132 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccc-cc------cCCCccE
Confidence 567999999999999999987543 246999999 111 23466666665433 32 1478999
Q ss_pred EEEcCCCcCC
Q 042171 70 AFMDADKDNY 79 (125)
Q Consensus 70 v~id~~~~~~ 79 (125)
|++....++.
T Consensus 133 V~~~~~lhh~ 142 (232)
T PRK06202 133 VTSNHFLHHL 142 (232)
T ss_pred EEECCeeecC
Confidence 9997654443
No 88
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.49 E-value=6.1e-07 Score=65.70 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=45.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|..+.++++. +.+|+++| .+..+++++..+|+.+. .++||
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~fD 121 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEFD 121 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCcC
Confidence 4679999999999999999875 56899999 22335799999998654 26799
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
+|++-
T Consensus 122 ~ii~~ 126 (219)
T TIGR02021 122 IVVCM 126 (219)
T ss_pred EEEEh
Confidence 99863
No 89
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.49 E-value=1.3e-06 Score=70.26 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=56.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..++++|+.. .+|+++| .++ ++++++.+|+.+.++.+.. ...+||+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~---~~~~~D~ 365 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPW---AGQIPDV 365 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHh---cCCCCCE
Confidence 4689999999999999999863 5899999 344 5899999999987765421 1357999
Q ss_pred EEEcCCCcC-CHHHHh
Q 042171 70 AFMDADKDN-YCNYMR 84 (125)
Q Consensus 70 v~id~~~~~-~~~~~~ 84 (125)
|++|..... ....++
T Consensus 366 vi~dPPr~G~~~~~l~ 381 (431)
T TIGR00479 366 LLLDPPRKGCAAEVLR 381 (431)
T ss_pred EEECcCCCCCCHHHHH
Confidence 999976533 455554
No 90
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=3.7e-07 Score=73.48 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
+..+|||+|||+|..|+.+++..+ +++|+++| ....-.++++.+|+.+..+.+ ..++||.|
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~-----~~~~fD~V 317 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW-----DGQPFDRI 317 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc-----ccCCCCEE
Confidence 456899999999999999999886 48999999 112224789999997643222 14679999
Q ss_pred EEcCC
Q 042171 71 FMDAD 75 (125)
Q Consensus 71 ~id~~ 75 (125)
++|+.
T Consensus 318 l~D~P 322 (427)
T PRK10901 318 LLDAP 322 (427)
T ss_pred EECCC
Confidence 99874
No 91
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.49 E-value=4e-07 Score=65.97 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=44.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||+|..++++++. +.+|+++| .++ ++++...|.... + + .++||
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~-~-~------~~~fD 96 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAA-A-L------NEDYD 96 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhc-c-c------cCCCC
Confidence 5679999999999999999985 57999999 123 366777776432 2 2 35799
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+|++...
T Consensus 97 ~I~~~~~ 103 (195)
T TIGR00477 97 FIFSTVV 103 (195)
T ss_pred EEEEecc
Confidence 9997543
No 92
>PRK05785 hypothetical protein; Provisional
Probab=98.49 E-value=1.3e-07 Score=70.11 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=47.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C-----CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A-----RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~-----~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
.+.+|||||||||..+..+++.. +++|+++| + -...+..++++|+.+. | + ++++||+|++....
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~l-p-~-----~d~sfD~v~~~~~l 120 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADDKVVGSFEAL-P-F-----RDKSFDVVMSSFAL 120 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccceEEechhhC-C-C-----CCCCEEEEEecChh
Confidence 36799999999999999999876 47999999 0 0112345678888764 4 2 26889999986544
No 93
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.48 E-value=7.2e-07 Score=63.99 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CC--CCCcEEEEecchHHH--HHHHhhcCCCCCceeEEEEcCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-AR--VDHKINFIESEALSV--LDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~--~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~v~id~~ 75 (125)
+..+|||+|||+|..+..+++...+.++|+++| .. -..+++++.+|+.+. ++.+... .+.++||+|++|+.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~-~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRER-VGDDKVDVVMSDAA 107 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHH-hCCCCccEEEcCCC
Confidence 457899999999999999998876578999999 22 124688888887542 1111100 01467999999864
No 94
>PRK08317 hypothetical protein; Provisional
Probab=98.48 E-value=4.4e-07 Score=66.00 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=51.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
+..+|||+|||+|.++..+++.+++.++++++| .....+++++.+|+.+. + + ..++||+|
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v 91 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-P-F-----PDGSFDAV 91 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-C-C-----CCCCceEE
Confidence 456999999999999999999885578999999 12345799999988653 2 2 14789999
Q ss_pred EEcCC
Q 042171 71 FMDAD 75 (125)
Q Consensus 71 ~id~~ 75 (125)
++...
T Consensus 92 ~~~~~ 96 (241)
T PRK08317 92 RSDRV 96 (241)
T ss_pred EEech
Confidence 98654
No 95
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.48 E-value=4.4e-07 Score=66.31 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=51.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..+..+++..++..+++++| .++..+++++.+|+.+. + + ..++||+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~ 124 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-P-F-----PDNSFDA 124 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-C-C-----CCCCccE
Confidence 46999999999999999999886568999999 12345789999998764 2 1 1468999
Q ss_pred EEEcCCC
Q 042171 70 AFMDADK 76 (125)
Q Consensus 70 v~id~~~ 76 (125)
|++....
T Consensus 125 I~~~~~l 131 (239)
T PRK00216 125 VTIAFGL 131 (239)
T ss_pred EEEeccc
Confidence 9986543
No 96
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.48 E-value=1.3e-06 Score=63.55 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
...+|||+|||.|....+|.+. + +.+.+++| +-+..-+.++++|+.+.|+.+. +++||.|++.-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k-~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~-----d~sFD~VIlsq 83 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-K-QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFP-----DQSFDYVILSQ 83 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-c-CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCC-----CCCccEEehHh
Confidence 4579999999999999888875 2 78899999 2233457799999999988773 78999999743
No 97
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.48 E-value=1.1e-06 Score=66.69 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------------CC-C-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------------AR-V-DHKINFIESEALSVLDQLLKDSENE 64 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------------~~-~-~~~i~~~~gd~~~~l~~~~~~~~~~ 64 (125)
.+|++||+||||+|..+..+++..+ ..+++++| .+ + ..+++++.+|+.+.+... .
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~ 143 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------E 143 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------C
Confidence 3578999999999999998887653 57899999 11 1 257999999999887653 4
Q ss_pred CceeEEEEcCCC
Q 042171 65 VNFDYAFMDADK 76 (125)
Q Consensus 65 ~~fD~v~id~~~ 76 (125)
++||+|++|...
T Consensus 144 ~~yDvIi~D~~~ 155 (270)
T TIGR00417 144 NTFDVIIVDSTD 155 (270)
T ss_pred CCccEEEEeCCC
Confidence 789999999763
No 98
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.47 E-value=8e-07 Score=65.93 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=49.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
+..+|||||||+|..+..+++.++ ++++++++| .+...+++++++|+.+. + ...+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~ 123 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--------IKNA 123 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-C--------CCCC
Confidence 346899999999999999999763 479999999 23345799999999765 2 2458
Q ss_pred eEEEEcCC
Q 042171 68 DYAFMDAD 75 (125)
Q Consensus 68 D~v~id~~ 75 (125)
|+|++...
T Consensus 124 d~v~~~~~ 131 (239)
T TIGR00740 124 SMVILNFT 131 (239)
T ss_pred CEEeeecc
Confidence 98887654
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.47 E-value=3.9e-07 Score=73.26 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..|+.+++.++ +++|+++| .++..++++..+|+.+... +. ..++||
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~-~~----~~~~fD 311 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ-WA----ENEQFD 311 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc-cc----cccccC
Confidence 346899999999999999999987 79999999 4554345557777654321 10 146799
Q ss_pred EEEEcC
Q 042171 69 YAFMDA 74 (125)
Q Consensus 69 ~v~id~ 74 (125)
.|++|+
T Consensus 312 ~VllDa 317 (426)
T TIGR00563 312 RILLDA 317 (426)
T ss_pred EEEEcC
Confidence 999995
No 100
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.47 E-value=3.7e-07 Score=69.18 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC--CEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPED--GQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~--~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
+..+|||||||+|+.+..+++.++.. .+++++| .....++++..+|+.+. | + ++++||+|+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p-~-----~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-P-F-----ADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-C-C-----cCCceeEEEE
Confidence 44689999999999999999987642 3799999 11225688999998764 4 2 2578999997
Q ss_pred cCCCcCCHHHHh
Q 042171 73 DADKDNYCNYMR 84 (125)
Q Consensus 73 d~~~~~~~~~~~ 84 (125)
-.......++.+
T Consensus 158 ~~~~~~~~e~~r 169 (272)
T PRK11088 158 IYAPCKAEELAR 169 (272)
T ss_pred ecCCCCHHHHHh
Confidence 655544444444
No 101
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.47 E-value=4.1e-07 Score=64.66 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=45.2
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
+.|+|+.||.|-.|+.+|+.. .+|++|| .|+.++|+++.||+.+.++.+.. ...||+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence 368999999999999999984 5799999 78889999999999998766521 1228999
Q ss_pred EEcC
Q 042171 71 FMDA 74 (125)
Q Consensus 71 ~id~ 74 (125)
|++-
T Consensus 74 FlSP 77 (163)
T PF09445_consen 74 FLSP 77 (163)
T ss_dssp EE--
T ss_pred EECC
Confidence 9863
No 102
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.46 E-value=1e-06 Score=64.13 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=51.8
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
.+||||||.|.+.+.+|+..| +..++++| .++ .++.++.+|+...++.+.. .+++|-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~----~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFP----PGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhccc----CCchheEE
Confidence 689999999999999999998 89999999 455 7999999999998887642 47899999
Q ss_pred Ec
Q 042171 72 MD 73 (125)
Q Consensus 72 id 73 (125)
+.
T Consensus 94 i~ 95 (195)
T PF02390_consen 94 IN 95 (195)
T ss_dssp EE
T ss_pred Ee
Confidence 84
No 103
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.45 E-value=7.1e-07 Score=67.23 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=47.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCC-CcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVD-HKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
+.+|||+|||+|..++.+++..+ +.+|+++| .... ..++++++|+.+.++... .++||+|++|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~-----~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTAL-----RGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhc-----CCCEeEEEEC
Confidence 35899999999999999999876 57999999 1110 125789999887654321 3579999975
No 104
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.43 E-value=1e-06 Score=71.20 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..++.+|+.. .+|+++| .++ ++++++.+|+.+.++.+.- ...+||+
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~---~~~~fD~ 370 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPW---ALGGFDK 370 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhh---hcCCCCE
Confidence 4689999999999999999873 6899999 344 4799999999876543210 1357999
Q ss_pred EEEcCCCcCCHHHH
Q 042171 70 AFMDADKDNYCNYM 83 (125)
Q Consensus 70 v~id~~~~~~~~~~ 83 (125)
|++|-.-......+
T Consensus 371 Vi~dPPr~g~~~~~ 384 (443)
T PRK13168 371 VLLDPPRAGAAEVM 384 (443)
T ss_pred EEECcCCcChHHHH
Confidence 99986543333333
No 105
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.42 E-value=4.8e-06 Score=62.53 Aligned_cols=63 Identities=16% Similarity=0.320 Sum_probs=52.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCC-EEEEEe--------C-------C-CCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDG-QITAID--------A-------R-VDHKINFIESEALSVLDQLLKDSENEVN 66 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~-~v~~iD--------~-------~-~~~~i~~~~gd~~~~l~~~~~~~~~~~~ 66 (125)
+..+|||.|+|-||.++..+++ ++ +|+++| + + ...+|+++.||+.+..+.+ ++++
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D~s 205 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DDES 205 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Cccc
Confidence 4579999999999999998876 56 899999 1 1 2236899999999999888 3688
Q ss_pred eeEEEEcC
Q 042171 67 FDYAFMDA 74 (125)
Q Consensus 67 fD~v~id~ 74 (125)
||+|+-|-
T Consensus 206 fDaIiHDP 213 (287)
T COG2521 206 FDAIIHDP 213 (287)
T ss_pred cceEeeCC
Confidence 99999764
No 106
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.42 E-value=1.9e-06 Score=62.41 Aligned_cols=68 Identities=10% Similarity=-0.008 Sum_probs=52.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..++||++||+|..++.++.+- ..+|+++| .++.++++++.+|+.+.++.+.+. ...||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~---~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK---PTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc---CCCce
Confidence 45789999999999999998873 24899999 455568999999998877654221 23589
Q ss_pred EEEEcCCC
Q 042171 69 YAFMDADK 76 (125)
Q Consensus 69 ~v~id~~~ 76 (125)
+||+|-.-
T Consensus 124 vv~~DPPy 131 (189)
T TIGR00095 124 VIYLDPPF 131 (189)
T ss_pred EEEECcCC
Confidence 99988653
No 107
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.42 E-value=8.7e-07 Score=64.09 Aligned_cols=65 Identities=23% Similarity=0.395 Sum_probs=51.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
++.+|||+|||+|..+..+++..+..++++++| .....+++++.+|+.+. + + ..++||+|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~~D~i~ 111 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEAL-P-F-----EDNSFDAVT 111 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcC-C-C-----CCCcEEEEE
Confidence 467999999999999999999987448999999 11345789999999865 2 2 146899998
Q ss_pred EcCC
Q 042171 72 MDAD 75 (125)
Q Consensus 72 id~~ 75 (125)
+...
T Consensus 112 ~~~~ 115 (223)
T TIGR01934 112 IAFG 115 (223)
T ss_pred Eeee
Confidence 8654
No 108
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.41 E-value=6e-07 Score=72.76 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
+..+|||||||+|..++.+++.. +.+|+++| .+...+++++.+|+.+. + + +.++||+|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~I 336 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-T-Y-----PDNSFDVI 336 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-C-C-----CCCCEEEE
Confidence 35699999999999999999876 57999999 24456899999998764 2 2 14689999
Q ss_pred EEcCCC
Q 042171 71 FMDADK 76 (125)
Q Consensus 71 ~id~~~ 76 (125)
++....
T Consensus 337 ~s~~~l 342 (475)
T PLN02336 337 YSRDTI 342 (475)
T ss_pred EECCcc
Confidence 986543
No 109
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.41 E-value=1e-06 Score=67.77 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
+..+|||||||+|..++.++++.| +.+++++| .++.+||+++.+|..+. + + ..+|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~-~-------~~~D~ 218 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE-S-Y-------PEADA 218 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCC-C-C-------CCCCE
Confidence 457999999999999999999998 78999999 46778999999998753 1 2 34799
Q ss_pred EEEcCC
Q 042171 70 AFMDAD 75 (125)
Q Consensus 70 v~id~~ 75 (125)
|++..-
T Consensus 219 v~~~~~ 224 (306)
T TIGR02716 219 VLFCRI 224 (306)
T ss_pred EEeEhh
Confidence 887543
No 110
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.41 E-value=6e-07 Score=63.86 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=45.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
++.+|||+|||+|+.+..+++.. .+|+++| .....+++++.+|+.+.. .++||+|
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---------~~~fD~V 86 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---------RGKFDVI 86 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---------CCcccEE
Confidence 46789999999999999999864 3899999 111125888999986542 3589999
Q ss_pred EEcC
Q 042171 71 FMDA 74 (125)
Q Consensus 71 ~id~ 74 (125)
+++.
T Consensus 87 i~n~ 90 (179)
T TIGR00537 87 LFNP 90 (179)
T ss_pred EECC
Confidence 9863
No 111
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.41 E-value=7.6e-07 Score=68.06 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=45.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||+|..++++++. +.+|+++| .++ ++++...|..+. + + .++||
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~-~-~------~~~fD 186 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA-S-I------QEEYD 186 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc-c-c------cCCcc
Confidence 5679999999999999999984 58999999 223 578888887653 1 2 46899
Q ss_pred EEEEcC
Q 042171 69 YAFMDA 74 (125)
Q Consensus 69 ~v~id~ 74 (125)
+|++..
T Consensus 187 ~I~~~~ 192 (287)
T PRK12335 187 FILSTV 192 (287)
T ss_pred EEEEcc
Confidence 999754
No 112
>PRK14967 putative methyltransferase; Provisional
Probab=98.40 E-value=8.8e-07 Score=65.24 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=46.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
..+|||+|||+|..++.+++. + ..+++++| .....+++++.+|..+.++ .++||+|+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--------~~~fD~Vi 106 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--------FRPFDVVV 106 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--------CCCeeEEE
Confidence 469999999999999999975 3 36999999 1112358899999876432 46899999
Q ss_pred EcC
Q 042171 72 MDA 74 (125)
Q Consensus 72 id~ 74 (125)
++.
T Consensus 107 ~np 109 (223)
T PRK14967 107 SNP 109 (223)
T ss_pred ECC
Confidence 863
No 113
>PLN02823 spermine synthase
Probab=98.40 E-value=2e-06 Score=67.49 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-----C-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-----V-DHKINFIESEALSVLDQLLKDSENE 64 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-----~-~~~i~~~~gd~~~~l~~~~~~~~~~ 64 (125)
.+|++||.||+|.|.++.++++.-+ ..+|+.+| .+ + .+|++++.+|+.+.+... .
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~ 174 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------D 174 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------C
Confidence 3688999999999999999888544 57899999 11 1 478999999999987542 4
Q ss_pred CceeEEEEcCCC
Q 042171 65 VNFDYAFMDADK 76 (125)
Q Consensus 65 ~~fD~v~id~~~ 76 (125)
++||+||+|...
T Consensus 175 ~~yDvIi~D~~d 186 (336)
T PLN02823 175 EKFDVIIGDLAD 186 (336)
T ss_pred CCccEEEecCCC
Confidence 689999999643
No 114
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.39 E-value=9.1e-07 Score=66.98 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=47.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
+..+|||||||+|..+..+++.. +++|+++| ....++++++.+|+.+. | + +.++||+|+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~-~-----~~~~FD~V~ 122 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-D-F-----PENTFDMIY 122 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-C-C-----CCCCeEEEE
Confidence 34699999999999999998764 57999999 12235799999998753 2 2 257899999
Q ss_pred Ec
Q 042171 72 MD 73 (125)
Q Consensus 72 id 73 (125)
+-
T Consensus 123 s~ 124 (263)
T PTZ00098 123 SR 124 (263)
T ss_pred Eh
Confidence 83
No 115
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.39 E-value=7e-07 Score=66.87 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=45.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------C---CCCC--cEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------A---RVDH--KINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~---~~~~--~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
...+|||||||-|..+.+||+. +.+|+++| + ...+ .+.....++++.... .++||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~-------~~~FDvV 128 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASA-------GGQFDVV 128 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhc-------CCCccEE
Confidence 4579999999999999999996 69999999 1 1111 355777777766432 4799999
Q ss_pred EE
Q 042171 71 FM 72 (125)
Q Consensus 71 ~i 72 (125)
.+
T Consensus 129 ~c 130 (243)
T COG2227 129 TC 130 (243)
T ss_pred EE
Confidence 97
No 116
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.38 E-value=1.3e-06 Score=66.96 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||+|||+|..++.+++. + ..+|+++| .++..++++..++... .. .++||
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~------~~~fD 227 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PI------EGKAD 227 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---cc------CCCce
Confidence 4579999999999999988864 4 46999999 3455677777776321 11 46899
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
+|+++.....+..+++
T Consensus 228 lVvan~~~~~l~~ll~ 243 (288)
T TIGR00406 228 VIVANILAEVIKELYP 243 (288)
T ss_pred EEEEecCHHHHHHHHH
Confidence 9998765433334443
No 117
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.34 E-value=8e-06 Score=60.93 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=53.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
..+||||||.|-+.+.+|+..| +.-+++|| .++. ++.++.+||.+.++.+.. .++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeEE
Confidence 4789999999999999999998 68999999 4553 999999999999988742 4589999
Q ss_pred EEc
Q 042171 71 FMD 73 (125)
Q Consensus 71 ~id 73 (125)
++.
T Consensus 124 ~i~ 126 (227)
T COG0220 124 YIN 126 (227)
T ss_pred EEE
Confidence 883
No 118
>PRK03612 spermidine synthase; Provisional
Probab=98.34 E-value=3.2e-06 Score=69.73 Aligned_cols=67 Identities=21% Similarity=0.369 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------C--C--------C-CCcEEEEecchHHHHHHHhhcC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------A--R--------V-DHKINFIESEALSVLDQLLKDS 61 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~--~--------~-~~~i~~~~gd~~~~l~~~~~~~ 61 (125)
.++++||+||||+|..+..+++. ++..+|+.+| . . + .+|++++.+|+.+.+...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---- 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---- 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC----
Confidence 36889999999999999998874 4247999999 1 1 1 258999999999887643
Q ss_pred CCCCceeEEEEcCCC
Q 042171 62 ENEVNFDYAFMDADK 76 (125)
Q Consensus 62 ~~~~~fD~v~id~~~ 76 (125)
.++||+|++|...
T Consensus 371 --~~~fDvIi~D~~~ 383 (521)
T PRK03612 371 --AEKFDVIIVDLPD 383 (521)
T ss_pred --CCCCCEEEEeCCC
Confidence 4689999999654
No 119
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.34 E-value=2.3e-06 Score=67.84 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=49.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||+|||+|..++.+|.. ..+|+++| .++ ++++++.+|+.+.++.. ..+||
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~------~~~~D 302 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQ------MSAPE 302 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhc------CCCCC
Confidence 3578999999999999999954 47899999 344 48999999998876532 24699
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+|++|-.
T Consensus 303 ~vi~DPP 309 (374)
T TIGR02085 303 LVLVNPP 309 (374)
T ss_pred EEEECCC
Confidence 9999854
No 120
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.34 E-value=6.2e-06 Score=64.20 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=45.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+.++|||||||+|+.+..++..- ..+|+++| .....++.+..++..+. +. ..+||
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~FD 190 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYAFD 190 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCCcC
Confidence 45799999999999999988753 25799999 12235678888887654 32 35799
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
.||+-+.
T Consensus 191 ~V~s~gv 197 (314)
T TIGR00452 191 TVFSMGV 197 (314)
T ss_pred EEEEcch
Confidence 9998543
No 121
>PHA03411 putative methyltransferase; Provisional
Probab=98.32 E-value=1.6e-06 Score=66.43 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=47.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
..+|||+|||+|..++.+++..+ ..+|+++| ..+ .+++++.+|+.+... ..+||+|+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-~~v~~v~~D~~e~~~--------~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-PEAEWITSDVFEFES--------NEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-cCCEEEECchhhhcc--------cCCCcEEEEc
Confidence 46899999999999999988765 57999999 122 478999999987632 3679999984
No 122
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=3.8e-06 Score=64.15 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=56.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
...|+|-|||+|..+.++++++.+.|++++.| .++.+++++.+-|.... -... ++..+|.
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~-GF~~----ks~~aDa 180 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS-GFLI----KSLKADA 180 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC-Cccc----cccccce
Confidence 35899999999999999999998899999999 68899999999988754 1111 1578999
Q ss_pred EEEcCCCc
Q 042171 70 AFMDADKD 77 (125)
Q Consensus 70 v~id~~~~ 77 (125)
||+|-..+
T Consensus 181 VFLDlPaP 188 (314)
T KOG2915|consen 181 VFLDLPAP 188 (314)
T ss_pred EEEcCCCh
Confidence 99986543
No 123
>PRK14968 putative methyltransferase; Provisional
Probab=98.31 E-value=2.4e-06 Score=60.44 Aligned_cols=60 Identities=17% Similarity=0.370 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCc-EEEEecchHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHK-INFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~-i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
+.++|||+|||+|+.+..+++. +.+++++| .++.++ +.++.+|..+.++ ..+|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 91 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--------GDKF 91 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--------ccCc
Confidence 4568999999999999999987 58999999 233333 8899998866432 3479
Q ss_pred eEEEEcC
Q 042171 68 DYAFMDA 74 (125)
Q Consensus 68 D~v~id~ 74 (125)
|+|+.+.
T Consensus 92 d~vi~n~ 98 (188)
T PRK14968 92 DVILFNP 98 (188)
T ss_pred eEEEECC
Confidence 9999764
No 124
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.30 E-value=1.8e-06 Score=67.89 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=49.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV-DHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
..+|||||||+|..++.+++.++ +.+++++| ... ..+++++.+|+.+. + + ..++||+|++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p-~-----~~~sFDvVIs~ 185 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-P-F-----PTDYADRYVSA 185 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-C-C-----CCCceeEEEEc
Confidence 45999999999999999999886 58999999 111 24788999999764 3 2 14789999986
Q ss_pred CC
Q 042171 74 AD 75 (125)
Q Consensus 74 ~~ 75 (125)
..
T Consensus 186 ~~ 187 (340)
T PLN02490 186 GS 187 (340)
T ss_pred Ch
Confidence 54
No 125
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.29 E-value=1.1e-06 Score=65.50 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=46.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
++.+|||+|||+|..+..+++. +.+++++| ......+.++.+|+.+. | + .+++||+|++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~V~s~~ 111 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAADHYLAGDIESL-P-L-----ATATFDLAWSNL 111 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-c-C-----CCCcEEEEEECc
Confidence 3578999999999999888763 57999999 11112356888998764 3 2 256899999865
Q ss_pred CC
Q 042171 75 DK 76 (125)
Q Consensus 75 ~~ 76 (125)
..
T Consensus 112 ~l 113 (251)
T PRK10258 112 AV 113 (251)
T ss_pred hh
Confidence 43
No 126
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.29 E-value=1.5e-06 Score=64.05 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=46.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCC--------------CCcEEEEecchHHHHHHH
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARV--------------DHKINFIESEALSVLDQL 57 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~--------------~~~i~~~~gd~~~~l~~~ 57 (125)
...+|||+|||.|..++|||+. +-+|+++| +++ ..+|+++++|..+.-+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3469999999999999999975 68899999 122 236899999998763221
Q ss_pred hhcCCCCCceeEEEEc
Q 042171 58 LKDSENEVNFDYAFMD 73 (125)
Q Consensus 58 ~~~~~~~~~fD~v~id 73 (125)
..+||.|+--
T Consensus 111 ------~~~fD~i~D~ 120 (213)
T TIGR03840 111 ------LGPVDAVYDR 120 (213)
T ss_pred ------CCCcCEEEec
Confidence 3568988743
No 127
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.25 E-value=2.3e-06 Score=63.27 Aligned_cols=59 Identities=5% Similarity=0.031 Sum_probs=46.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCC--------------CCcEEEEecchHHHHHHHh
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARV--------------DHKINFIESEALSVLDQLL 58 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~--------------~~~i~~~~gd~~~~l~~~~ 58 (125)
..+||++|||.|..++|||+. +.+|+++| .++ ..+|++.++|..+..+..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 469999999999999999984 68999999 122 257899999998764321
Q ss_pred hcCCCCCceeEEEE
Q 042171 59 KDSENEVNFDYAFM 72 (125)
Q Consensus 59 ~~~~~~~~fD~v~i 72 (125)
...||+|+-
T Consensus 114 -----~~~fd~v~D 122 (218)
T PRK13255 114 -----LADVDAVYD 122 (218)
T ss_pred -----CCCeeEEEe
Confidence 357999984
No 128
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.6e-06 Score=63.97 Aligned_cols=74 Identities=11% Similarity=0.217 Sum_probs=57.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCE-EEEEe-----------------------CCC-CCcEEEEecchHHHHHHHh
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQ-ITAID-----------------------ARV-DHKINFIESEALSVLDQLL 58 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-v~~iD-----------------------~~~-~~~i~~~~gd~~~~l~~~~ 58 (125)
+..+.||+|+|+||.|.++++-+...|. .++|| ..+ ..++.+++||.....+.
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 3458999999999999999988765555 49999 011 13678999999987664
Q ss_pred hcCCCCCceeEEEEcCCCcCCHH-HHh
Q 042171 59 KDSENEVNFDYAFMDADKDNYCN-YMR 84 (125)
Q Consensus 59 ~~~~~~~~fD~v~id~~~~~~~~-~~~ 84 (125)
..+||.|++.|+...-++ +++
T Consensus 160 -----~a~YDaIhvGAaa~~~pq~l~d 181 (237)
T KOG1661|consen 160 -----QAPYDAIHVGAAASELPQELLD 181 (237)
T ss_pred -----cCCcceEEEccCccccHHHHHH
Confidence 589999999988776654 555
No 129
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.24 E-value=3.8e-06 Score=61.17 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=42.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.++||+|||.|-.+++||+. +-.|+++| .++ .|+....|..+.- + ...||
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~--~------~~~yD 96 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFD--F------PEEYD 96 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS---------TTTEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcc--c------cCCcC
Confidence 6789999999999999999997 78999999 334 3888888876542 2 36799
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
+|++.
T Consensus 97 ~I~st 101 (192)
T PF03848_consen 97 FIVST 101 (192)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99864
No 130
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.23 E-value=3.1e-06 Score=61.83 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=42.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
-.++||+|||.|..|..||... .+++++| .+. ++|++++++..+..| .++||+|+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P--------~~~FDLIV 111 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWP--------EGRFDLIV 111 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT-----------SS-EEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCC--------CCCeeEEE
Confidence 3589999999999999999985 5799999 444 689999999987755 58999999
Q ss_pred Ec
Q 042171 72 MD 73 (125)
Q Consensus 72 id 73 (125)
+.
T Consensus 112 ~S 113 (201)
T PF05401_consen 112 LS 113 (201)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 131
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.23 E-value=2.2e-06 Score=67.34 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=44.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..++.+++..| ..+|+++| .++ ..+++.+|..+. . .++||+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~---~------~~~fDl 264 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD---I------KGRFDM 264 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc---c------CCCccE
Confidence 45899999999999999999877 68999999 223 246677776542 2 367999
Q ss_pred EEEcC
Q 042171 70 AFMDA 74 (125)
Q Consensus 70 v~id~ 74 (125)
|+++-
T Consensus 265 IvsNP 269 (342)
T PRK09489 265 IISNP 269 (342)
T ss_pred EEECC
Confidence 99854
No 132
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.23 E-value=6.5e-06 Score=51.05 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=47.9
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
+|+|+|||+|..+..+++ . ...+++++| .....+++++.+|..+..+. ...+||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE------ADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc------cCCceEEEEE
Confidence 489999999999999988 3 368999999 12335789999999877431 1467999998
Q ss_pred cCCC
Q 042171 73 DADK 76 (125)
Q Consensus 73 d~~~ 76 (125)
+..-
T Consensus 73 ~~~~ 76 (107)
T cd02440 73 DPPL 76 (107)
T ss_pred ccce
Confidence 6654
No 133
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.23 E-value=1.5e-06 Score=62.61 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=47.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-C------CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-A------RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~------~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
...+|||||||+|..+..+++.. +.+++++| + ....+++++.+|+.+.++.+ ..++||+|++...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~-----~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAF-----PDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhccccc-----CCCCcCEEEEhhH
Confidence 35689999999999999988764 45789999 1 01245788999987644323 2478999998654
No 134
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.23 E-value=5.7e-06 Score=63.83 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=46.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..+|||||||+|..|..+++. ..+|+++| .+..++++++.+|+.+. + ..+||
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-~--------~~~~d 103 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-E--------FPYFD 103 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-c--------ccccC
Confidence 3468999999999999999986 46799999 23346899999999865 1 24689
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
.|+.+
T Consensus 104 ~VvaN 108 (294)
T PTZ00338 104 VCVAN 108 (294)
T ss_pred EEEec
Confidence 88864
No 135
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.22 E-value=9.8e-06 Score=62.64 Aligned_cols=72 Identities=13% Similarity=0.054 Sum_probs=56.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC--CCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV--DHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~--~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
...+||.+||.|.-|..+++.++++++|+++| ..+ .+++++++++..+....+..+ ..++|.|++
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~---~~~vDgIl~ 96 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEG---LGKVDGILL 96 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcC---CCccCEEEE
Confidence 34899999999999999999998789999999 223 358999999999875544210 137999999
Q ss_pred cCCCcCC
Q 042171 73 DADKDNY 79 (125)
Q Consensus 73 d~~~~~~ 79 (125)
|-...++
T Consensus 97 DLGvSs~ 103 (296)
T PRK00050 97 DLGVSSP 103 (296)
T ss_pred CCCcccc
Confidence 9776543
No 136
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.22 E-value=6.5e-06 Score=65.10 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=51.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCC--------
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSE-------- 62 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~-------- 62 (125)
.+|||++||+|..++.+++.. .+|+++| .++ ++++++.+|+.+.++.+.+...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhccccccccccc
Confidence 579999999999999999874 4899999 345 4899999999998776532100
Q ss_pred -CCCceeEEEEcCCC
Q 042171 63 -NEVNFDYAFMDADK 76 (125)
Q Consensus 63 -~~~~fD~v~id~~~ 76 (125)
...+||+||+|-.-
T Consensus 284 ~~~~~~D~v~lDPPR 298 (362)
T PRK05031 284 LKSYNFSTIFVDPPR 298 (362)
T ss_pred ccCCCCCEEEECCCC
Confidence 01259999998763
No 137
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.22 E-value=3.7e-06 Score=65.48 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=44.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-C------CCcEEEEecchHHHHHHHhhcCCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-V------DHKINFIESEALSVLDQLLKDSENE 64 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-~------~~~i~~~~gd~~~~l~~~~~~~~~~ 64 (125)
+..+|||||||+|..++.+++. +.+|+++| .. . ..++++..+|..+. .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~ 210 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S 210 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence 4569999999999999999985 57999999 11 0 23578888886432 3
Q ss_pred CceeEEEEcCC
Q 042171 65 VNFDYAFMDAD 75 (125)
Q Consensus 65 ~~fD~v~id~~ 75 (125)
++||+|++-..
T Consensus 211 ~~fD~Vv~~~v 221 (315)
T PLN02585 211 GKYDTVTCLDV 221 (315)
T ss_pred CCcCEEEEcCE
Confidence 67999987443
No 138
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.22 E-value=5.2e-06 Score=61.06 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=42.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHh---hCCCCCEEEEEe-------------CCCCCcEEEEecchHHH--HHHHhhcCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTAL---TIPEDGQITAID-------------ARVDHKINFIESEALSV--LDQLLKDSENE 64 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~---~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~--l~~~~~~~~~~ 64 (125)
.+|..|+|+|+..|-|++|+|. .++..++|++|| .++.++|++++||+.+. +..... ....
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~-~~~~ 109 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRE-LASP 109 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGS-S---
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHH-hhcc
Confidence 5899999999999999999886 444579999999 24558999999999864 111100 0012
Q ss_pred CceeEEEEcCCCc
Q 042171 65 VNFDYAFMDADKD 77 (125)
Q Consensus 65 ~~fD~v~id~~~~ 77 (125)
..-.+|+.|+.+.
T Consensus 110 ~~~vlVilDs~H~ 122 (206)
T PF04989_consen 110 PHPVLVILDSSHT 122 (206)
T ss_dssp -SSEEEEESS---
T ss_pred CCceEEEECCCcc
Confidence 3466999999864
No 139
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.18 E-value=3.9e-06 Score=64.85 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.+.++|||+|||||..++..++ ++ ..+|+++| .++.+++++. ...+. ...+|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~k-lG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~ 226 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAK-LG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGKF 226 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHH-TT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-E
T ss_pred cCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------ccccC
Confidence 4567999999999999999887 44 46899999 6777777663 11111 14789
Q ss_pred eEEEEcC
Q 042171 68 DYAFMDA 74 (125)
Q Consensus 68 D~v~id~ 74 (125)
|+|+.+-
T Consensus 227 dlvvANI 233 (295)
T PF06325_consen 227 DLVVANI 233 (295)
T ss_dssp EEEEEES
T ss_pred CEEEECC
Confidence 9999743
No 140
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=3.4e-06 Score=65.09 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=44.9
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
.+|||+|||.|+.++.+++..| ..+++.+| .++ ++..+..+|..+-. .++||+|
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~-~~~~v~~s~~~~~v---------~~kfd~I 228 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGV-ENTEVWASNLYEPV---------EGKFDLI 228 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCC-CccEEEEecccccc---------cccccEE
Confidence 3899999999999999999998 89999999 222 33366777776542 3489999
Q ss_pred EEc
Q 042171 71 FMD 73 (125)
Q Consensus 71 ~id 73 (125)
+++
T Consensus 229 isN 231 (300)
T COG2813 229 ISN 231 (300)
T ss_pred EeC
Confidence 974
No 141
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.15 E-value=7.5e-06 Score=61.78 Aligned_cols=58 Identities=26% Similarity=0.273 Sum_probs=45.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
+..+|||||||+|..|..+++. ..+|+++| ....++++++.+|+.+. + + ..||.|+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~-~-~-------~~~d~Vv 96 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV-D-L-------PEFNKVV 96 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC-C-c-------hhceEEE
Confidence 3568999999999999999987 36899999 11136899999999864 2 2 3478888
Q ss_pred Ec
Q 042171 72 MD 73 (125)
Q Consensus 72 id 73 (125)
.+
T Consensus 97 ~N 98 (258)
T PRK14896 97 SN 98 (258)
T ss_pred Ec
Confidence 64
No 142
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.15 E-value=4.9e-07 Score=58.07 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=23.3
Q ss_pred EEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 9 IEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 9 LeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
||||||+|..+..+++..+ ..+++++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D 27 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVD 27 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEE
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEE
Confidence 7999999999999999996 89999999
No 143
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.15 E-value=9.5e-06 Score=64.90 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=54.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCC-EEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDG-QITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~-~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.++||++-|+||..++..|.+ ++ +|++|| .++. +++.++++|+.+++...... ..+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~---g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR---GEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc---CCcc
Confidence 679999999999999998886 55 899999 5654 57999999999999887432 4589
Q ss_pred eEEEEcC
Q 042171 68 DYAFMDA 74 (125)
Q Consensus 68 D~v~id~ 74 (125)
|+|++|-
T Consensus 292 DlIilDP 298 (393)
T COG1092 292 DLIILDP 298 (393)
T ss_pred cEEEECC
Confidence 9999984
No 144
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.14 E-value=4.7e-06 Score=67.58 Aligned_cols=62 Identities=23% Similarity=0.245 Sum_probs=48.2
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v~ 71 (125)
..+|||||||+|..+..+++. ..+|+++| .+..++++++.+|+.+. ++ + +.++||+|+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~I~ 108 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-I-----SDGSVDLIF 108 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-C-----CCCCEEEEe
Confidence 468999999999999999986 46899999 22346799999998642 22 2 247899999
Q ss_pred EcCC
Q 042171 72 MDAD 75 (125)
Q Consensus 72 id~~ 75 (125)
+...
T Consensus 109 ~~~~ 112 (475)
T PLN02336 109 SNWL 112 (475)
T ss_pred hhhh
Confidence 8654
No 145
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=5.2e-06 Score=64.19 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
.++++|||+|||+|..++.+++ ++ ..+++++|
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~k-LG-A~~v~g~D 192 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAK-LG-AKKVVGVD 192 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHH-cC-CceEEEec
Confidence 4688999999999999999887 44 46799999
No 146
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.13 E-value=1.7e-05 Score=60.95 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=56.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CC-CCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------AR-VDHKINFIESEALSVLDQLLKDSENEV 65 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~~ 65 (125)
+|++||-||-|.|..+..+++..+ --+++.+| .+ ..+|++++.+|+.+++... ..
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~ 148 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EE 148 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------CC
Confidence 567999999999999999998765 68899998 12 2589999999999998764 35
Q ss_pred ceeEEEEcCCCc
Q 042171 66 NFDYAFMDADKD 77 (125)
Q Consensus 66 ~fD~v~id~~~~ 77 (125)
+||+|++|....
T Consensus 149 ~fDvIi~D~tdp 160 (282)
T COG0421 149 KFDVIIVDSTDP 160 (282)
T ss_pred cCCEEEEcCCCC
Confidence 899999997654
No 147
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.12 E-value=3.4e-06 Score=63.98 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=42.3
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------------CCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------------ARVDHKINFIESEALSVLDQLLKDSENEV 65 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~ 65 (125)
++|||+|||+|..+..||+. +.+|++|| .++.-++++...++.+. .+
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence 67999999999999999996 68999999 11222466666666544 46
Q ss_pred ceeEEEEc
Q 042171 66 NFDYAFMD 73 (125)
Q Consensus 66 ~fD~v~id 73 (125)
.||.|++.
T Consensus 158 ~fDaVvcs 165 (282)
T KOG1270|consen 158 KFDAVVCS 165 (282)
T ss_pred ccceeeeH
Confidence 69999974
No 148
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.11 E-value=7e-06 Score=63.57 Aligned_cols=63 Identities=25% Similarity=0.208 Sum_probs=44.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.+.++|||||||.||.+..|+.+- ...|+++| .+.. ...+......+.+|. .+.|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp~-------~~~F 183 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLPN-------LGAF 183 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhccc-------cCCc
Confidence 467899999999999999999872 35799999 2332 223333345555554 3789
Q ss_pred eEEEEcCC
Q 042171 68 DYAFMDAD 75 (125)
Q Consensus 68 D~v~id~~ 75 (125)
|.||+=+-
T Consensus 184 DtVF~MGV 191 (315)
T PF08003_consen 184 DTVFSMGV 191 (315)
T ss_pred CEEEEeee
Confidence 99998543
No 149
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.10 E-value=1.7e-05 Score=57.19 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=48.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...++||+-+|||..++..+.+- ..+|+.|| .++.++++++.+|+...++.+... ..+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~---~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKK---GEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHC---TS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhccc---CCCce
Confidence 45789999999999999765541 35899999 455568999999999888776432 57899
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+||+|-.
T Consensus 117 iIflDPP 123 (183)
T PF03602_consen 117 IIFLDPP 123 (183)
T ss_dssp EEEE--S
T ss_pred EEEECCC
Confidence 9999854
No 150
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.10 E-value=1.6e-05 Score=62.68 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=53.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhc------CC-
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKD------SE- 62 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~------~~- 62 (125)
+.+|||++||+|..++.+++.. .+|+++| .++ ++++++.+|+.+.++...+. .+
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 273 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAMNGVREFRRLKGI 273 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHhhcccccccccc
Confidence 3479999999999999999885 4899999 344 47999999999887642110 00
Q ss_pred --CCCceeEEEEcCCCcC-CHHHHh
Q 042171 63 --NEVNFDYAFMDADKDN-YCNYMR 84 (125)
Q Consensus 63 --~~~~fD~v~id~~~~~-~~~~~~ 84 (125)
....||+||+|-.... .+..++
T Consensus 274 ~~~~~~~d~v~lDPPR~G~~~~~l~ 298 (353)
T TIGR02143 274 DLKSYNCSTIFVDPPRAGLDPDTCK 298 (353)
T ss_pred ccccCCCCEEEECCCCCCCcHHHHH
Confidence 0123899999976332 344444
No 151
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.09 E-value=1e-05 Score=60.69 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=25.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|||+|||+|..++.+++. + ..+|+++|
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giD 149 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVD 149 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEE
Confidence 5679999999999999987764 3 35799999
No 152
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.09 E-value=2.6e-05 Score=59.19 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=56.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCC-----CEEEEEe------------C---CCCC--cEEEEecchHHHHHHHhhcCC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPED-----GQITAID------------A---RVDH--KINFIESEALSVLDQLLKDSE 62 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~-----~~v~~iD------------~---~~~~--~i~~~~gd~~~~l~~~~~~~~ 62 (125)
..++||+++|||..|..+.+.++.. ++|+.+| + ++.+ ++.++.+||+++ | +
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F----- 173 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F----- 173 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C-----
Confidence 3589999999999999999999742 8999999 2 4544 499999999866 5 5
Q ss_pred CCCceeEEEEcCCCcCCHH
Q 042171 63 NEVNFDYAFMDADKDNYCN 81 (125)
Q Consensus 63 ~~~~fD~v~id~~~~~~~~ 81 (125)
++.+||...+...-++++.
T Consensus 174 dd~s~D~yTiafGIRN~th 192 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVTH 192 (296)
T ss_pred CCCcceeEEEecceecCCC
Confidence 3689999999877766543
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.08 E-value=1.3e-05 Score=57.11 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=41.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CC--CCCcEEEEecchHHHH-HHHhhcCCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------AR--VDHKINFIESEALSVL-DQLLKDSENEV 65 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~--~~~~i~~~~gd~~~~l-~~~~~~~~~~~ 65 (125)
.+.++|||+|||+|..++.+++..+ ..+|+..| .+ ...++++..-++.+.. +... ...
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~~~ 118 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----EPH 118 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S-S
T ss_pred cCCceEEEECCccchhHHHHHhccC-CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccc----ccc
Confidence 4678999999999999999999854 68999999 22 4567888887775533 2221 146
Q ss_pred ceeEEEEc
Q 042171 66 NFDYAFMD 73 (125)
Q Consensus 66 ~fD~v~id 73 (125)
+||+|+..
T Consensus 119 ~~D~Ilas 126 (173)
T PF10294_consen 119 SFDVILAS 126 (173)
T ss_dssp SBSEEEEE
T ss_pred cCCEEEEe
Confidence 89999963
No 154
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.07 E-value=1.6e-05 Score=63.33 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=43.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV-DHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
...+|||||||+|..++.+++.. +.+|+++| ... ...+++..+|..+. .++||.|++
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l----------~~~fD~Ivs 234 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL----------NGQFDRIVS 234 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc----------CCCCCEEEE
Confidence 34699999999999999999876 47999999 111 12478888887543 367999986
Q ss_pred c
Q 042171 73 D 73 (125)
Q Consensus 73 d 73 (125)
-
T Consensus 235 ~ 235 (383)
T PRK11705 235 V 235 (383)
T ss_pred e
Confidence 4
No 155
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.06 E-value=1.9e-05 Score=58.10 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=46.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
+..+|||||||+|..+..+++. ..+++++| .....+++++.++..+..... .++||+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~fD~I 118 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEH------PGQFDVV 118 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc------CCCccEE
Confidence 4568999999999999998875 46899999 111235788888887664321 4789999
Q ss_pred EEcC
Q 042171 71 FMDA 74 (125)
Q Consensus 71 ~id~ 74 (125)
++..
T Consensus 119 i~~~ 122 (233)
T PRK05134 119 TCME 122 (233)
T ss_pred EEhh
Confidence 9853
No 156
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.05 E-value=2e-05 Score=54.00 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCC--CC--CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR--VD--HKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDN 78 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~--~~--~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~ 78 (125)
.+..+|||||||+|..+..|++. +.+++++|.. .. .++....-+..+. +.. .++||+|++...-.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~~~~~~~~~~~~~~-~~~------~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEKRNVVFDNFDAQDP-PFP------DGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHHTTSEEEEEECHTH-HCH------SSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhhhhhhhhhhhhhhh-hcc------ccchhhHhhHHHHhh
Confidence 45679999999999999999665 3599999911 00 2233333322222 111 589999998655443
Q ss_pred C
Q 042171 79 Y 79 (125)
Q Consensus 79 ~ 79 (125)
.
T Consensus 91 ~ 91 (161)
T PF13489_consen 91 L 91 (161)
T ss_dssp S
T ss_pred c
Confidence 3
No 157
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.05 E-value=4.3e-05 Score=58.83 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=48.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVD-HKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
+.++||++-|+||..++..+.. + ..+|++|| .++. ++++++.+|+.+.+..+.. .++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----GGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----TT-E
T ss_pred CCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----CCCC
Confidence 4679999999999999987764 1 24799999 5664 6899999999998877643 4689
Q ss_pred eEEEEcCC
Q 042171 68 DYAFMDAD 75 (125)
Q Consensus 68 D~v~id~~ 75 (125)
|+|++|-.
T Consensus 197 D~IIlDPP 204 (286)
T PF10672_consen 197 DLIILDPP 204 (286)
T ss_dssp EEEEE--S
T ss_pred CEEEECCC
Confidence 99999854
No 158
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.05 E-value=1.2e-05 Score=60.98 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=55.7
Q ss_pred CCCEEEEEcCcccH----HHHHHHhhCCC----CCEEEEEe----------CCC--------------------------
Q 042171 4 KLKKTIEIGVFTGY----SLFLTALTIPE----DGQITAID----------ARV-------------------------- 39 (125)
Q Consensus 4 ~~~~vLeiG~g~G~----~t~~la~~~~~----~~~v~~iD----------~~~-------------------------- 39 (125)
++.+|+++|||||. .++.+++..+. +.+|+++| .+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999996 45566665542 47899999 221
Q ss_pred -----CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhc
Q 042171 40 -----DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVD 108 (125)
Q Consensus 40 -----~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (125)
.++|+|.++|..+..+. .++||+|++ ++...||+ .....+.++++.+.|+.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~-------~~~fD~I~c----rnvl~yf~-------~~~~~~~l~~l~~~L~p 234 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPP-------LGDFDLIFC----RNVLIYFD-------EPTQRKLLNRFAEALKP 234 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCc-------cCCCCEEEe----chhHHhCC-------HHHHHHHHHHHHHHhCC
Confidence 24688999998865221 478999997 23334443 11134456666666643
No 159
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.04 E-value=1.8e-05 Score=57.67 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=46.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCC-CcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVD-HKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~-~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
+..+|||+|||+|.++..+++. ..+++++| .... .++++..+++.+..... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG------AKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC------CCCccE
Confidence 4679999999999999998875 35699999 1111 26889999988763321 368999
Q ss_pred EEEcC
Q 042171 70 AFMDA 74 (125)
Q Consensus 70 v~id~ 74 (125)
|++..
T Consensus 116 i~~~~ 120 (224)
T TIGR01983 116 VTCME 120 (224)
T ss_pred EEehh
Confidence 99853
No 160
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.02 E-value=1.1e-05 Score=63.35 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
.+.+.|||+|||||..+++.|++- ..+|+++| .++.+.|++++|...+. .|+ .++.|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eKVD 129 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEKVD 129 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE--ecC-----cccee
Confidence 467899999999999999999974 46899999 67888899999999986 331 47899
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
.|++.
T Consensus 130 iIvSE 134 (346)
T KOG1499|consen 130 IIVSE 134 (346)
T ss_pred EEeeh
Confidence 99963
No 161
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.00 E-value=2.9e-05 Score=63.52 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||+|+++|.=|..||..++..|.|+|+| .|+ .++.+...|+....+.+ ...||
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~------~~~fD 185 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAAL------PETFD 185 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhc------hhhcC
Confidence 456899999999999999999998789999999 556 56888889987653333 35799
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
.|++|+.
T Consensus 186 ~ILvDaP 192 (470)
T PRK11933 186 AILLDAP 192 (470)
T ss_pred eEEEcCC
Confidence 9999965
No 162
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.97 E-value=3.6e-05 Score=59.35 Aligned_cols=74 Identities=14% Similarity=0.028 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCC-CCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARV-DHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
.+.+|||+|||+|..|..+++++++..+++++| ... ..+|..+.+|..+.++... ++ ...+..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~-~~-~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP-EP-AAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc-cc-ccCCeE
Confidence 347899999999999999999986568999999 111 1357788999987544321 10 012455
Q ss_pred EEEEcCCCcCC
Q 042171 69 YAFMDADKDNY 79 (125)
Q Consensus 69 ~v~id~~~~~~ 79 (125)
+++++..-.++
T Consensus 141 ~~~~gs~~~~~ 151 (301)
T TIGR03438 141 GFFPGSTIGNF 151 (301)
T ss_pred EEEecccccCC
Confidence 66666654444
No 163
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.96 E-value=2.3e-05 Score=61.74 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CC------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-AR------VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
+..++|||||++|-+|-.+++. +++|++|| .. -..+|+.+++|.....|. ..++|++++|...
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~-------~~~vDwvVcDmve 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPP-------RKNVDWLVCDMVE 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCC-------CCCCCEEEEeccc
Confidence 4569999999999999999986 67999999 11 236899999999877553 3689999999874
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.94 E-value=2.3e-05 Score=59.55 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=38.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC-CCcEEEEecchHHH
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV-DHKINFIESEALSV 53 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~-~~~i~~~~gd~~~~ 53 (125)
+..+|||||||+|..|..+++.. .+|+++| ..+ .++++++++|+.+.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~ 99 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV 99 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence 45689999999999999999984 4899999 112 25899999999875
No 165
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.94 E-value=6.6e-05 Score=58.48 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=45.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..+|||+|||+|..++.++.. +.+++++| .++.+ ++++.+|+.+. |.. .++||.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l-~~~------~~~~D~ 251 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL-PLS------SESVDA 251 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC-Ccc------cCCCCE
Confidence 458999999999998886653 68999999 35544 88999999864 321 468999
Q ss_pred EEEc
Q 042171 70 AFMD 73 (125)
Q Consensus 70 v~id 73 (125)
|++|
T Consensus 252 Iv~d 255 (329)
T TIGR01177 252 IATD 255 (329)
T ss_pred EEEC
Confidence 9986
No 166
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=5.2e-05 Score=55.73 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=53.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----CCCCCcEEEEecchHH--HHHHHhhcCCCCCceeEEEEcCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----ARVDHKINFIESEALS--VLDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----~~~~~~i~~~~gd~~~--~l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
+...|+|+|+.+|.|+-.+++.++++++|+++| ... ..|.++++|..+ .+..+... -...++|+|.+|++.
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-~~V~~iq~d~~~~~~~~~l~~~-l~~~~~DvV~sD~ap 121 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-PGVIFLQGDITDEDTLEKLLEA-LGGAPVDVVLSDMAP 121 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-CCceEEeeeccCccHHHHHHHH-cCCCCcceEEecCCC
Confidence 457899999999999999999998888999999 233 459999998874 22222111 024568999999886
No 167
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.93 E-value=2.7e-05 Score=57.72 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
+.++|||||.|+|..+..++++.| +.+++..| +.-.+||+++.||..+.+| . +|++++-.-.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P---------~-~D~~~l~~vL 168 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYP-NLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLP---------V-ADVYLLRHVL 168 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCS---------S-ESEEEEESSG
T ss_pred CccEEEeccCcchHHHHHHHHHCC-CCcceeeccHhhhhccccccccccccccHHhhhc---------c-ccceeeehhh
Confidence 457899999999999999999999 89999999 1116899999999984432 3 9999985444
Q ss_pred cCC
Q 042171 77 DNY 79 (125)
Q Consensus 77 ~~~ 79 (125)
+++
T Consensus 169 h~~ 171 (241)
T PF00891_consen 169 HDW 171 (241)
T ss_dssp GGS
T ss_pred hhc
Confidence 443
No 168
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.91 E-value=3.4e-05 Score=57.94 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=38.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV 53 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~ 53 (125)
+..+|||||||+|..|..|++..+ +++++| .....+++++.+|+.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence 457899999999999999999853 599999 12236899999999865
No 169
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.88 E-value=6.9e-05 Score=56.38 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CC-CCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------AR-VDHKINFIESEALSVLDQLLKDSENEV 65 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~~ 65 (125)
+|++||-||-|.|..+..+.+.-+ ..+|+.+| .+ -.+|++++.+|+...+... .+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~ 148 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QE 148 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SS
T ss_pred CcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cC
Confidence 689999999999999999887543 57899999 11 2469999999999987763 34
Q ss_pred -ceeEEEEcCCCc
Q 042171 66 -NFDYAFMDADKD 77 (125)
Q Consensus 66 -~fD~v~id~~~~ 77 (125)
+||+|++|...+
T Consensus 149 ~~yDvIi~D~~dp 161 (246)
T PF01564_consen 149 EKYDVIIVDLTDP 161 (246)
T ss_dssp T-EEEEEEESSST
T ss_pred CcccEEEEeCCCC
Confidence 899999998753
No 170
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.86 E-value=2.8e-05 Score=55.30 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=46.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCC-C--CCcEEEEecchHHH--HHHHhhcCC-CCCceeEEEEcCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR-V--DHKINFIESEALSV--LDQLLKDSE-NEVNFDYAFMDADK 76 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~-~--~~~i~~~~gd~~~~--l~~~~~~~~-~~~~fD~v~id~~~ 76 (125)
+..+|||+||++|.|+-++++...+.++|+++|-+ . ...+..+.+|..+. ...+..... ...+||+|++|+..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~ 101 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAP 101 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceecccccc
Confidence 35799999999999999999998557999999922 1 15677777775531 111211000 12689999999953
No 171
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.84 E-value=5.5e-05 Score=61.54 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=45.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhC---CCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171 5 LKKTIEIGVFTGYSLFLTALTI---PEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVN 66 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~---~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~ 66 (125)
...|++||||+|......+++. ....+|+||| .++.++|+++++|..++- + ..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--l------pek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--L------PEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--H------SS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--C------CCc
Confidence 4679999999999998877764 2246899999 567789999999999872 2 368
Q ss_pred eeEEEEc
Q 042171 67 FDYAFMD 73 (125)
Q Consensus 67 fD~v~id 73 (125)
.|+|++-
T Consensus 259 vDIIVSE 265 (448)
T PF05185_consen 259 VDIIVSE 265 (448)
T ss_dssp EEEEEE-
T ss_pred eeEEEEe
Confidence 9999974
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=7.1e-05 Score=54.43 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
..+.|+|+|||||..++..+. ++ ..+|+++| ..+..+|.++.+|..+. ...+|.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~-lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~----------~~~~dtv 112 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL-LG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF----------RGKFDTV 112 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh-cC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc----------CCccceE
Confidence 346799999999999998775 44 47899999 23556899999999765 4778988
Q ss_pred EEcCCC-----cCCHHHHhhhC--CCCCCcchHHHHHHHHHHhhcCCCeEEEE
Q 042171 71 FMDADK-----DNYCNYMREQV--PDHFRGSSKQAILDLNRSLVDDPCVQLSH 116 (125)
Q Consensus 71 ~id~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (125)
+.+-.- +.=.++++... .+....-+..+.++|.++-..+-++++++
T Consensus 113 imNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 113 IMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred EECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcCCeEEE
Confidence 875221 11122333111 11111113334788888887777765554
No 173
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5.9e-05 Score=54.72 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=48.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC-CCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR-VDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
.+.-++|||||+|+.+..+++.+.++....++| +. ...++..+..|....+. .++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--------~~~VDvL 114 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--------NESVDVL 114 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--------cCCccEE
Confidence 477899999999999999999998788899999 11 22357788888887654 4789988
Q ss_pred EE
Q 042171 71 FM 72 (125)
Q Consensus 71 ~i 72 (125)
+.
T Consensus 115 vf 116 (209)
T KOG3191|consen 115 VF 116 (209)
T ss_pred EE
Confidence 85
No 174
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.81 E-value=8.5e-05 Score=59.29 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=49.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
.+|||++||+|..++.+|+..+ ..+|+++| .++ ++++++.+|+.+.++. ..+||+|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~-------~~~fD~V 129 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALLHE-------ERKFDVV 129 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhh-------cCCCCEE
Confidence 4899999999999999998875 46899999 344 4577999999877642 2569999
Q ss_pred EEcCC
Q 042171 71 FMDAD 75 (125)
Q Consensus 71 ~id~~ 75 (125)
++|--
T Consensus 130 ~lDP~ 134 (382)
T PRK04338 130 DIDPF 134 (382)
T ss_pred EECCC
Confidence 99864
No 175
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.81 E-value=0.00021 Score=58.89 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=50.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
...+||||||.|-+++.+|+..| +..++++| .++ .++.++.+|+......+. ++++|-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~-----~~sv~~ 420 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLP-----NNSLDG 420 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcC-----cccccE
Confidence 45789999999999999999998 78999999 445 588899998866554442 578999
Q ss_pred EEEc
Q 042171 70 AFMD 73 (125)
Q Consensus 70 v~id 73 (125)
|++.
T Consensus 421 i~i~ 424 (506)
T PRK01544 421 IYIL 424 (506)
T ss_pred EEEE
Confidence 9984
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=8e-05 Score=56.60 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=45.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v~ 71 (125)
..+|||||+|.|..|..|++. ..+|++|| ....+++++++||++.. ++.+ ..++.|+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l-------~~~~~vV 100 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL-------AQPYKVV 100 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh-------cCCCEEE
Confidence 468999999999999999998 46699999 22457899999999975 2211 1577787
Q ss_pred E
Q 042171 72 M 72 (125)
Q Consensus 72 i 72 (125)
.
T Consensus 101 a 101 (259)
T COG0030 101 A 101 (259)
T ss_pred E
Confidence 5
No 177
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.71 E-value=0.00013 Score=52.87 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=48.1
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
+++|||||-|.=++.+|-..| +.+++.+| -++ ++++++.+.+.+ +.. ..+||+|+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~~------~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE--PEY------RESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH--TTT------TT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc--ccc------CCCccEEE
Confidence 799999999999999999998 79999999 466 589999999998 221 57899999
Q ss_pred EcCCC
Q 042171 72 MDADK 76 (125)
Q Consensus 72 id~~~ 76 (125)
+-|-.
T Consensus 121 aRAv~ 125 (184)
T PF02527_consen 121 ARAVA 125 (184)
T ss_dssp EESSS
T ss_pred eehhc
Confidence 86654
No 178
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00027 Score=51.30 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
....++||+=+|+|..++..+.+- ..+++.|| .++..+++++..|+...++.+.. .++|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~----~~~F 115 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT----REPF 115 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----CCcc
Confidence 346799999999999998866652 36899999 45568899999999987776632 2469
Q ss_pred eEEEEcCCC
Q 042171 68 DYAFMDADK 76 (125)
Q Consensus 68 D~v~id~~~ 76 (125)
|+||+|-.-
T Consensus 116 DlVflDPPy 124 (187)
T COG0742 116 DLVFLDPPY 124 (187)
T ss_pred cEEEeCCCC
Confidence 999998654
No 179
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.66 E-value=0.00019 Score=52.57 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=46.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+...|+|.-||.|+.++.+|+.-+ ..+|+|+| .++.++|+.+.+|+.+.++ ...||
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~d 171 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGKFD 171 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-EE
T ss_pred cceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccccC
Confidence 456899999999999999998544 67899999 6788889999999998865 37899
Q ss_pred EEEEcCCC
Q 042171 69 YAFMDADK 76 (125)
Q Consensus 69 ~v~id~~~ 76 (125)
-|+++-.+
T Consensus 172 rvim~lp~ 179 (200)
T PF02475_consen 172 RVIMNLPE 179 (200)
T ss_dssp EEEE--TS
T ss_pred EEEECChH
Confidence 99986543
No 180
>PRK10742 putative methyltransferase; Provisional
Probab=97.63 E-value=0.00024 Score=53.70 Aligned_cols=59 Identities=12% Similarity=0.315 Sum_probs=49.8
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C------C--CCCcEEEEecchHHHHHHHhhcCCC
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A------R--VDHKINFIESEALSVLDQLLKDSEN 63 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~------~--~~~~i~~~~gd~~~~l~~~~~~~~~ 63 (125)
+|||.-+|+|.-++.++.. +++|+.+| + + +..|++++.+|+.+++...
T Consensus 91 ~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------ 161 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------ 161 (250)
T ss_pred EEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------
Confidence 7999999999999999987 68899999 1 1 2257999999999998764
Q ss_pred CCceeEEEEcC
Q 042171 64 EVNFDYAFMDA 74 (125)
Q Consensus 64 ~~~fD~v~id~ 74 (125)
..+||+||+|-
T Consensus 162 ~~~fDVVYlDP 172 (250)
T PRK10742 162 TPRPQVVYLDP 172 (250)
T ss_pred CCCCcEEEECC
Confidence 35799999984
No 181
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.57 E-value=0.00062 Score=54.29 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=55.2
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
-+|||.-||+|.-++.+++..+.-.+|+++| .++ .+++++.+|+...+... ..+||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~------~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYR------NRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHh------CCCCCEE
Confidence 4899999999999999999864246899999 223 36889999999887653 3679999
Q ss_pred EEcCCCcCCHHHHh
Q 042171 71 FMDADKDNYCNYMR 84 (125)
Q Consensus 71 ~id~~~~~~~~~~~ 84 (125)
++|- .....++++
T Consensus 119 dlDP-fGs~~~fld 131 (374)
T TIGR00308 119 DIDP-FGTPAPFVD 131 (374)
T ss_pred EeCC-CCCcHHHHH
Confidence 9998 334345655
No 182
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.54 E-value=6.9e-05 Score=55.50 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=45.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC--------------CCCcEEEEecchHHHHHHH
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR--------------VDHKINFIESEALSVLDQL 57 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~--------------~~~~i~~~~gd~~~~l~~~ 57 (125)
...+||..|||.|+-.+|||.. +-+|+++| .+ -..+|++.+||..+.-+..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 3459999999999999999986 67999999 11 1246899999998763321
Q ss_pred hhcCCCCCceeEEEE
Q 042171 58 LKDSENEVNFDYAFM 72 (125)
Q Consensus 58 ~~~~~~~~~fD~v~i 72 (125)
.++||+|+=
T Consensus 114 ------~g~fD~iyD 122 (218)
T PF05724_consen 114 ------VGKFDLIYD 122 (218)
T ss_dssp ------HHSEEEEEE
T ss_pred ------cCCceEEEE
Confidence 357999994
No 183
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.53 E-value=0.00021 Score=52.92 Aligned_cols=62 Identities=18% Similarity=0.312 Sum_probs=50.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc-ee
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVN-FD 68 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~-fD 68 (125)
+.+++|||+|.|.=++-+|-..| +.+|+-+| -++ ++++++++.+++.-+. .+ ||
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~--------~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE--------KKQYD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc--------cccCc
Confidence 68999999999999999997777 67799999 345 6799999999887432 23 99
Q ss_pred EEEEcCCC
Q 042171 69 YAFMDADK 76 (125)
Q Consensus 69 ~v~id~~~ 76 (125)
+|.+-|-.
T Consensus 138 ~vtsRAva 145 (215)
T COG0357 138 VVTSRAVA 145 (215)
T ss_pred EEEeehcc
Confidence 99986543
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.52 E-value=0.00025 Score=56.11 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
+.+-|||+|||+|..+...|.+- ..+|+++| ..+.+||+++.|..+++ ++ .++.|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~Dv 246 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKVDV 246 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc--cC------chhccE
Confidence 45778999999999999988862 46899999 45789999999999887 34 367999
Q ss_pred EEEc
Q 042171 70 AFMD 73 (125)
Q Consensus 70 v~id 73 (125)
+++.
T Consensus 247 iISE 250 (517)
T KOG1500|consen 247 IISE 250 (517)
T ss_pred EEec
Confidence 9864
No 185
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.52 E-value=0.00026 Score=52.83 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=52.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++..|+|.=||.|-.|+.+|.. ...|++|| .|+.+||+|++||.+++...+... ...+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hheee
Confidence 5678999999999999999987 45699999 688899999999999987665321 34488
Q ss_pred EEEEcC
Q 042171 69 YAFMDA 74 (125)
Q Consensus 69 ~v~id~ 74 (125)
+||...
T Consensus 168 ~vf~sp 173 (263)
T KOG2730|consen 168 CVFLSP 173 (263)
T ss_pred eeecCC
Confidence 998753
No 186
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.51 E-value=0.001 Score=50.98 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=53.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
...+|||.+++.|-=|..+|..++..|+|++.| .|+ .++..+..|+....+... ...||
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~-----~~~fd 158 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKP-----ESKFD 158 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHH-----TTTEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccccc-----ccccc
Confidence 345899999999999999999998789999999 565 567777788887755442 34699
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
.|++|+.
T Consensus 159 ~VlvDaP 165 (283)
T PF01189_consen 159 RVLVDAP 165 (283)
T ss_dssp EEEEECS
T ss_pred hhhcCCC
Confidence 9999964
No 187
>PRK04148 hypothetical protein; Provisional
Probab=97.51 E-value=0.00012 Score=50.52 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=40.2
Q ss_pred CCCEEEEEcCcccH-HHHHHHhhCCCCCEEEEEeCC-------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 4 KLKKTIEIGVFTGY-SLFLTALTIPEDGQITAIDAR-------VDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~-~t~~la~~~~~~~~v~~iD~~-------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
+..+|||||||+|. .+..|++. +..|+++|.. ....+.++.+|..+--..+ -..+|+|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~------y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI------YKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH------HhcCCEEEE
Confidence 34689999999997 66666643 5799999911 1123567888877643333 255888874
No 188
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.50 E-value=0.0005 Score=49.38 Aligned_cols=74 Identities=19% Similarity=0.141 Sum_probs=52.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
+...|||+|.|||..|-.+.++--++..+++|| ...-+-+.+++||+.+.-..+... +...||.|++.-
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~--~gq~~D~viS~l 125 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH--KGQFFDSVISGL 125 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc--CCCeeeeEEecc
Confidence 345899999999999999888765578899999 122245679999999763233211 245699999754
Q ss_pred CCcCC
Q 042171 75 DKDNY 79 (125)
Q Consensus 75 ~~~~~ 79 (125)
...+.
T Consensus 126 Pll~~ 130 (194)
T COG3963 126 PLLNF 130 (194)
T ss_pred ccccC
Confidence 44443
No 189
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00017 Score=53.46 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=43.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEE-EEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKIN-FIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~-~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
...|||||||||..=-..-- .+..+|+++| .....+++ |+.+++.+. |++. +.++|.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~l~-----d~s~Dt 148 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQLA-----DGSYDT 148 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cccc-----cCCeee
Confidence 34679999999987544221 1578999999 12334666 899998766 6663 689999
Q ss_pred EEEc
Q 042171 70 AFMD 73 (125)
Q Consensus 70 v~id 73 (125)
|+..
T Consensus 149 VV~T 152 (252)
T KOG4300|consen 149 VVCT 152 (252)
T ss_pred EEEE
Confidence 9864
No 190
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.43 E-value=0.0003 Score=52.47 Aligned_cols=64 Identities=8% Similarity=0.033 Sum_probs=47.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CC--------------CCCcEEEEecchHHHHHHHh
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------AR--------------VDHKINFIESEALSVLDQLL 58 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~--------------~~~~i~~~~gd~~~~l~~~~ 58 (125)
..+||..|||.|.-++|||.. +-+|+++| .+ -..+|+++++|..+.-+.-
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~- 119 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA- 119 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence 469999999999999999986 67899999 11 1247899999998762210
Q ss_pred hcCCCCCceeEEEEcCC
Q 042171 59 KDSENEVNFDYAFMDAD 75 (125)
Q Consensus 59 ~~~~~~~~fD~v~id~~ 75 (125)
. ..++||+|+--+.
T Consensus 120 ~---~~~~fD~VyDra~ 133 (226)
T PRK13256 120 N---NLPVFDIWYDRGA 133 (226)
T ss_pred c---ccCCcCeeeeehh
Confidence 0 1367999885444
No 191
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.43 E-value=0.0004 Score=51.06 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=42.9
Q ss_pred EEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 8 TIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
|.||||--||..++|.+.-. -.+++++| .++.++|++..||.++.++. .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence 68999999999999999754 46799999 78889999999999987653 234788888
Q ss_pred cC
Q 042171 73 DA 74 (125)
Q Consensus 73 d~ 74 (125)
.+
T Consensus 73 AG 74 (205)
T PF04816_consen 73 AG 74 (205)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 192
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.40 E-value=0.00021 Score=52.11 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=44.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++.+|||+|||-|.....|++.== .++++++| .++.+.|+|.+.|..+- ..+ ..+||
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~------~~qfd 138 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL------SGQFD 138 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc------cccee
Confidence 456999999999999999888522 36799999 46766799999998763 222 35566
Q ss_pred EEE
Q 042171 69 YAF 71 (125)
Q Consensus 69 ~v~ 71 (125)
+|+
T Consensus 139 lvl 141 (227)
T KOG1271|consen 139 LVL 141 (227)
T ss_pred EEe
Confidence 665
No 193
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.34 E-value=0.00032 Score=52.35 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=27.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+.+.|||+|||||.+|.++++. + ..+|+++|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD 105 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVD 105 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEe
Confidence 4568999999999999999986 3 47899999
No 194
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.32 E-value=6.2e-05 Score=56.21 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=43.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCc--EEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHK--INFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~--i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
++.-|||||||+|.|+-.+... +-..+++| ..+... -.++.+|.-+-+|. ..++||-+++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~Glpf------rpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPF------RPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCC------CCCccceEEE
Confidence 4678999999999999776553 56689999 112111 24777787777774 3689999986
No 195
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.29 E-value=0.0009 Score=51.39 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=46.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
.+..|||||-|||..|..|.++ +.+|+|+| .+.+.+.++++||.... +...||
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~---------d~P~fd 125 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT---------DLPRFD 125 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC---------CCcccc
Confidence 3558999999999999999997 67899999 34558899999998754 124588
Q ss_pred EEEEc
Q 042171 69 YAFMD 73 (125)
Q Consensus 69 ~v~id 73 (125)
.++.+
T Consensus 126 ~cVsN 130 (315)
T KOG0820|consen 126 GCVSN 130 (315)
T ss_pred eeecc
Confidence 88853
No 196
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.21 E-value=0.00066 Score=53.55 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=43.4
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhc---------
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKD--------- 60 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~--------- 60 (125)
+.+|||+-||+|..++.||+.. .+|++|| .++ ++++++.+++.+....+...
T Consensus 197 ~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~~~~~ 272 (352)
T PF05958_consen 197 KGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNRLKGI 272 (352)
T ss_dssp TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS
T ss_pred CCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHhhhhh
Confidence 3489999999999999999874 6799999 355 68999999887653322100
Q ss_pred CCCCCceeEEEEcCCC
Q 042171 61 SENEVNFDYAFMDADK 76 (125)
Q Consensus 61 ~~~~~~fD~v~id~~~ 76 (125)
......+|.|++|-.-
T Consensus 273 ~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 273 DLKSFKFDAVILDPPR 288 (352)
T ss_dssp -GGCTTESEEEE---T
T ss_pred hhhhcCCCEEEEcCCC
Confidence 0012368999998553
No 197
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.14 E-value=0.00067 Score=45.97 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=26.0
Q ss_pred EEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 8 TIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+|||||+.|+.++++++..+ +++++++|
T Consensus 2 vlDiGa~~G~~~~~~~~~~~-~~~v~~~E 29 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGA-EGRVIAFE 29 (143)
T ss_pred EEEccCCccHHHHHHHHhCC-CCEEEEEe
Confidence 79999999999999999876 67999999
No 198
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.14 E-value=0.0008 Score=50.85 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=39.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHH
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSV 53 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~ 53 (125)
+...|||||.|+|..|..|++.. .+++++| ....++++++.+|+.++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhcc
Confidence 45789999999999999999985 7899999 23457899999999875
No 199
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.13 E-value=0.0018 Score=49.09 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+..+|||||-+|..|+.||+.+. ...|.++|
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvD 89 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVD 89 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEee
Confidence 3578899999999999999999997 57799999
No 200
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.0056 Score=44.86 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----CCCCCcEEEEec-chHH------HHHHHhhcCCCCCceeEEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----ARVDHKINFIES-EALS------VLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----~~~~~~i~~~~g-d~~~------~l~~~~~~~~~~~~fD~v~i 72 (125)
+..+|||+|+.+|.|+--..+.+.++|.|.+|| .+. +-++++.+ |..+ +...+ ++.+.|.|++
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~-~Ga~~i~~~dvtdp~~~~ki~e~l-----p~r~VdvVlS 142 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP-EGATIIQGNDVTDPETYRKIFEAL-----PNRPVDVVLS 142 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC-CCcccccccccCCHHHHHHHHHhC-----CCCcccEEEe
Confidence 346999999999999999999997799999999 333 33555555 3322 12222 3578999999
Q ss_pred cCCC
Q 042171 73 DADK 76 (125)
Q Consensus 73 d~~~ 76 (125)
|..+
T Consensus 143 DMap 146 (232)
T KOG4589|consen 143 DMAP 146 (232)
T ss_pred ccCC
Confidence 9875
No 201
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.001 Score=54.74 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=49.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee-E
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD-Y 69 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD-~ 69 (125)
+.+||+.||||.+++++|+.+ .+|++|| .|+ ++.+|+.|-+++.++.+.+++ ..+=+ +
T Consensus 385 k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~~~sl~~~~--~~~~~~v 458 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDLFPSLLTPC--CDSETLV 458 (534)
T ss_pred cEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCc-cceeeeecchhhccchhcccC--CCCCceE
Confidence 567999999999999999985 5799999 234 689999999999888875432 12345 5
Q ss_pred EEEcCC
Q 042171 70 AFMDAD 75 (125)
Q Consensus 70 v~id~~ 75 (125)
+++|-.
T Consensus 459 ~iiDPp 464 (534)
T KOG2187|consen 459 AIIDPP 464 (534)
T ss_pred EEECCC
Confidence 666644
No 202
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.91 E-value=0.0019 Score=44.33 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC---CCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIP---EDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~---~~~~v~~iD 36 (125)
.++..|+|+|||-||.+..++..++ .+.+|++||
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD 60 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGID 60 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEE
Confidence 4577999999999999999999431 368999999
No 203
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0047 Score=50.21 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=53.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..++||+=||.|..++++|+. ..+|+++| .++ ++++|+.+++.+..+... ....+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~~~~~~~----~~~~~d 364 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEEFTPAWW----EGYKPD 364 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHHhhhcc----ccCCCC
Confidence 3468999999999999999965 47899999 455 459999999999877642 135799
Q ss_pred EEEEcCCCcC
Q 042171 69 YAFMDADKDN 78 (125)
Q Consensus 69 ~v~id~~~~~ 78 (125)
.|++|-.-.-
T Consensus 365 ~VvvDPPR~G 374 (432)
T COG2265 365 VVVVDPPRAG 374 (432)
T ss_pred EEEECCCCCC
Confidence 9999965433
No 204
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.84 E-value=0.002 Score=49.51 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe----------------CCCCCcEEEEecchHHHHHHHhhcCCCCCc
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID----------------ARVDHKINFIESEALSVLDQLLKDSENEVN 66 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD----------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~ 66 (125)
.|++|+=||+| .-.++++|++....+..|+++| .++..+++|+.+|..+.... -..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-------l~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-------LKE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-------ccc
Confidence 36799999999 5677788887655478999999 35778999999999865222 267
Q ss_pred eeEEEEcCCCc
Q 042171 67 FDYAFMDADKD 77 (125)
Q Consensus 67 fD~v~id~~~~ 77 (125)
||.||+.+-..
T Consensus 193 ~DvV~lAalVg 203 (276)
T PF03059_consen 193 YDVVFLAALVG 203 (276)
T ss_dssp -SEEEE-TT-S
T ss_pred CCEEEEhhhcc
Confidence 99999987654
No 205
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0012 Score=46.54 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=46.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
..+.++|+|||+|... ++-.+++.-.|+++| ..+.-++.+++.+..+..+. .+.||-+
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~-------~g~fDta 118 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELK-------GGIFDTA 118 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhcc-------CCeEeeE
Confidence 4678999999999988 444566567899999 12344678899888876443 5789999
Q ss_pred EEcC
Q 042171 71 FMDA 74 (125)
Q Consensus 71 ~id~ 74 (125)
+++-
T Consensus 119 viNp 122 (185)
T KOG3420|consen 119 VINP 122 (185)
T ss_pred EecC
Confidence 9874
No 206
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0036 Score=47.29 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=23.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
.+.++|+|||+|-.++-+|.... +|+++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k---~VIatD 62 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK---EVIATD 62 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh---hheeec
Confidence 34789999999977777887754 599999
No 207
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.59 E-value=0.009 Score=50.63 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=53.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhC-------CC----CCEEEEEe-C---------------------------------CC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTI-------PE----DGQITAID-A---------------------------------RV 39 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~-------~~----~~~v~~iD-~---------------------------------~~ 39 (125)
.-+|+|+|=|+|++.+...+.. ++ .-+++++| . ++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999999877655 21 24789999 0 11
Q ss_pred ------CC--cEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC-CcCCHHHHh
Q 042171 40 ------DH--KINFIESEALSVLDQLLKDSENEVNFDYAFMDAD-KDNYCNYMR 84 (125)
Q Consensus 40 ------~~--~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~-~~~~~~~~~ 84 (125)
.. +++++.||+.+.++.+ ...||.+|+|+- ...+|+.|.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~ 185 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWS 185 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhcc
Confidence 11 4567889999998876 356999999985 345665555
No 208
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.57 E-value=0.024 Score=44.19 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=55.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
...++|.-+|.|--|..|+++++ +|+|+++| ..+..++++++++-.+....+... ...++|.|+
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~--~~~~vDgIl 97 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL--LVTKIDGIL 97 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc--CCCcccEEE
Confidence 35789999999999999999998 49999999 234468999999998875444211 135799999
Q ss_pred EcCCCcC
Q 042171 72 MDADKDN 78 (125)
Q Consensus 72 id~~~~~ 78 (125)
.|-..++
T Consensus 98 ~DLGvSS 104 (305)
T TIGR00006 98 VDLGVSS 104 (305)
T ss_pred EeccCCH
Confidence 9976544
No 209
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.50 E-value=0.024 Score=45.51 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------------CCCCCcEEEEecchHHHHHHHhhcC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------------ARVDHKINFIESEALSVLDQLLKDS 61 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------------~~~~~~i~~~~gd~~~~l~~~~~~~ 61 (125)
.+.++||-+|.|-|.....+.+. |.-.+|+-+| +=-+.|++++..|+.+++..-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 35789999999999999888874 4368899998 112469999999999998754
Q ss_pred CCCCceeEEEEcCCCcCC
Q 042171 62 ENEVNFDYAFMDADKDNY 79 (125)
Q Consensus 62 ~~~~~fD~v~id~~~~~~ 79 (125)
.+.||+|++|-..++.
T Consensus 363 --~~~fD~vIVDl~DP~t 378 (508)
T COG4262 363 --ADMFDVVIVDLPDPST 378 (508)
T ss_pred --cccccEEEEeCCCCCC
Confidence 4689999999765544
No 210
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.45 E-value=0.022 Score=43.09 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC---C-CCCEEEEEe-----------------------------------------CC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTI---P-EDGQITAID-----------------------------------------AR 38 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~---~-~~~~v~~iD-----------------------------------------~~ 38 (125)
-|..|+|.||.-|.+++.|+..+ . ++-+++..| .+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 36789999999999998775433 2 245799999 22
Q ss_pred -CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHh------hh--------CCCCCCcchHHHHHHHH
Q 042171 39 -VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR------EQ--------VPDHFRGSSKQAILDLN 103 (125)
Q Consensus 39 -~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~------~~--------~~~~~~~~~~~~~~~~~ 103 (125)
..+++++++|...+++|... ..++-++.+|++. |.+-.. .. +.++.-+.-.+++.+|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~Dl--YesT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~ 226 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDL--YESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFR 226 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---S--HHHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHH
T ss_pred CCcccEEEECCcchhhhccCC-----CccEEEEEEeccc--hHHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHH
Confidence 23689999999999988642 5789999999876 544333 11 12332223566777776
Q ss_pred HHh
Q 042171 104 RSL 106 (125)
Q Consensus 104 ~~l 106 (125)
++.
T Consensus 227 ~~~ 229 (248)
T PF05711_consen 227 AEH 229 (248)
T ss_dssp HHT
T ss_pred HHc
Confidence 653
No 211
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.43 E-value=0.014 Score=43.70 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=58.1
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------C--CCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------A--RVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------~--~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+.+..+||+||=|.|.....+-++-| . +=+-|| . +-.++|.+++|.+++.++.+. ++.||
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p-~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~-----d~~FD 171 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPP-D-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLP-----DKHFD 171 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCC-c-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcccc-----ccCcc
Confidence 35788999999999999988877655 3 334455 2 234789999999999999884 56799
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
-|+-|.-.+.|.+...
T Consensus 172 GI~yDTy~e~yEdl~~ 187 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRH 187 (271)
T ss_pred eeEeechhhHHHHHHH
Confidence 9999987766665544
No 212
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.39 E-value=0.00051 Score=51.69 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=42.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
.+++||+|||||..+..+.... .+++++| ..-...=++.++++...++.. ..++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~-----~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDL-----TQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhc-----cCCcccchhh
Confidence 5799999999999998877653 5688999 111112345667777665533 2578999974
No 213
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.38 E-value=0.0097 Score=42.60 Aligned_cols=62 Identities=23% Similarity=0.174 Sum_probs=43.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCC--------EEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDG--------QITAID---------------ARVDHKINFIESEALSVLDQLLKDS 61 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~--------~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~ 61 (125)
...+||--||+|...+..|.....-. ++++.| +++...|.+.+.|+.+. + +
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-~-~---- 102 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-P-L---- 102 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-G-G----
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-c-c----
Confidence 45899999999999988776544222 499999 77878899999999877 3 2
Q ss_pred CCCCceeEEEEc
Q 042171 62 ENEVNFDYAFMD 73 (125)
Q Consensus 62 ~~~~~fD~v~id 73 (125)
..+++|.|+.|
T Consensus 103 -~~~~~d~Ivtn 113 (179)
T PF01170_consen 103 -PDGSVDAIVTN 113 (179)
T ss_dssp -TTSBSCEEEEE
T ss_pred -ccCCCCEEEEC
Confidence 15789999974
No 214
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.38 E-value=0.0094 Score=44.39 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=56.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+..++.||||-.+|.++++.+..+ ..++++.| +++.++++...+|.+..+.. +..+|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d 87 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEID 87 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcC
Confidence 345699999999999999999877 68899999 67889999999999655431 45799
Q ss_pred EEEEcCCCc-CCHHHHh
Q 042171 69 YAFMDADKD-NYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~-~~~~~~~ 84 (125)
.+++.+=-. .-...++
T Consensus 88 ~ivIAGMGG~lI~~ILe 104 (226)
T COG2384 88 VIVIAGMGGTLIREILE 104 (226)
T ss_pred EEEEeCCcHHHHHHHHH
Confidence 999865432 2345555
No 215
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.36 E-value=0.0073 Score=46.19 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=57.6
Q ss_pred CCCEEEEEcCcccH----HHHHHHhhCCC----CCEEEEEe---------------------------------------
Q 042171 4 KLKKTIEIGVFTGY----SLFLTALTIPE----DGQITAID--------------------------------------- 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~----~t~~la~~~~~----~~~v~~iD--------------------------------------- 36 (125)
++-+|.-+||+||- .++.+.+..+. .-+|+|.|
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999993 44555556653 46899999
Q ss_pred ----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhcC
Q 042171 37 ----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVDD 109 (125)
Q Consensus 37 ----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (125)
..+...|+|...|..+..+ . .+.||+||| +|..-||+ ++...+.++.|.+.|+..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfC----RNVLIYFd-------~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-F------LGKFDLIFC----RNVLIYFD-------EETQERILRRFADSLKPG 234 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-c------cCCCCEEEE----cceEEeeC-------HHHHHHHHHHHHHHhCCC
Confidence 1123567888888776543 2 477999998 55555655 222455566666666543
No 216
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.014 Score=46.26 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCC-CEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPED-GQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~-~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
..+|||.+++.|-=|..||..+++. +.|+++| .|+. ++.++..|+........ ...+||
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~----~~~~fD 231 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP----GGEKFD 231 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccc----ccCcCc
Confidence 4699999999999999999999753 4569999 4553 47777777754422221 123699
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
.|++|+.
T Consensus 232 ~iLlDaP 238 (355)
T COG0144 232 RILLDAP 238 (355)
T ss_pred EEEECCC
Confidence 9999964
No 217
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.27 E-value=0.027 Score=48.30 Aligned_cols=99 Identities=14% Similarity=0.030 Sum_probs=62.6
Q ss_pred CCEEEEEcCcccHHHHHHHhh---CCC--------------------------------------CCEEEEEe-------
Q 042171 5 LKKTIEIGVFTGYSLFLTALT---IPE--------------------------------------DGQITAID------- 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~---~~~--------------------------------------~~~v~~iD------- 36 (125)
...++|-+||+|...+..|.. .++ ..+++++|
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 468999999999999887652 111 23799999
Q ss_pred --------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhCCCCCCcchHHHHHHHHHHhhc
Q 042171 37 --------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQVPDHFRGSSKQAILDLNRSLVD 108 (125)
Q Consensus 37 --------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (125)
+|+.++|++.++|+.+..+.. ..++||+|++ +|+|.+....+ . ......++|.+.++.
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~Ivt------NPPYg~r~~~~--~-~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVIS------NPPYGERLGEE--P-ALIALYSQLGRRLKQ 336 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEE------CCCCcCccCch--H-HHHHHHHHHHHHHHH
Confidence 688888999999998763211 1357999996 56665521110 1 123334555555543
Q ss_pred -CCCeEEEEe
Q 042171 109 -DPCVQLSHV 117 (125)
Q Consensus 109 -~~~~~~~~l 117 (125)
.++++..++
T Consensus 337 ~~~g~~~~ll 346 (702)
T PRK11783 337 QFGGWNAALF 346 (702)
T ss_pred hCCCCeEEEE
Confidence 355555444
No 218
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.022 Score=42.94 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeC---------CCCCcEEEEecc-hHHHHHHHhhcCCCCCceeEEEE
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAIDA---------RVDHKINFIESE-ALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~---------~~~~~i~~~~gd-~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
.+.+.+||||+.||-.|-++.+.= ..+|+|+|. ...+||...+.. +...-|.-. .+..|++++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-----~~~~d~~v~ 150 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-----TEKPDLIVI 150 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-----ccCCCeEEE
Confidence 356789999999999999998851 368999992 234677776554 333322211 347899999
Q ss_pred cCCCcCC
Q 042171 73 DADKDNY 79 (125)
Q Consensus 73 d~~~~~~ 79 (125)
|.+.-+.
T Consensus 151 DvSFISL 157 (245)
T COG1189 151 DVSFISL 157 (245)
T ss_pred EeehhhH
Confidence 9875443
No 219
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.24 E-value=0.0015 Score=48.99 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=41.2
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------------CCC----CCcEEEEecchHHHHHHHhhcCCC
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID-------------------ARV----DHKINFIESEALSVLDQLLKDSEN 63 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------------~~~----~~~i~~~~gd~~~~l~~~~~~~~~ 63 (125)
+|||.-+|.|.=++.+|.. +++|+++| ... ..||+++++|+.++|+ . .
T Consensus 78 ~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~-----~ 148 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-Q-----P 148 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-C-----H
T ss_pred EEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-h-----c
Confidence 8999999999999999964 57999999 111 2589999999999876 2 1
Q ss_pred CCceeEEEEc
Q 042171 64 EVNFDYAFMD 73 (125)
Q Consensus 64 ~~~fD~v~id 73 (125)
..+||+|++|
T Consensus 149 ~~s~DVVY~D 158 (234)
T PF04445_consen 149 DNSFDVVYFD 158 (234)
T ss_dssp SS--SEEEE-
T ss_pred CCCCCEEEEC
Confidence 5899999987
No 220
>PHA01634 hypothetical protein
Probab=95.95 E-value=0.011 Score=40.78 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=26.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+.++|+|||.+.|.|+++++..- .-+|+++|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E 58 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYE 58 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC--ccEEEEec
Confidence 56899999999999999999762 35799999
No 221
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.93 E-value=0.011 Score=43.49 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=42.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
..+.|+|+|+|..+...|++ .-+|++|| .|+ .+++++.||+.+. .+ +.-|.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y--~f-------e~ADvv 100 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDY--DF-------ENADVV 100 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccc--cc-------ccccee
Confidence 35789999999999999988 35799999 223 6899999999876 22 446777
Q ss_pred EE
Q 042171 71 FM 72 (125)
Q Consensus 71 ~i 72 (125)
++
T Consensus 101 ic 102 (252)
T COG4076 101 IC 102 (252)
T ss_pred HH
Confidence 64
No 222
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.014 Score=44.11 Aligned_cols=75 Identities=15% Similarity=0.296 Sum_probs=54.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC----CC----EEEEEe----CCCCCcEEEEecchH------HHHHHHhhcCCCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPE----DG----QITAID----ARVDHKINFIESEAL------SVLDQLLKDSENEV 65 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~----~~----~v~~iD----~~~~~~i~~~~gd~~------~~l~~~~~~~~~~~ 65 (125)
..++++|++...|.|+-.+++.+-. .+ +|++|| +++ +-|..+++|.. .++..|. .+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI-~GV~qlq~DIT~~stae~Ii~hfg-----ge 114 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI-EGVIQLQGDITSASTAEAIIEHFG-----GE 114 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc-CceEEeecccCCHhHHHHHHHHhC-----CC
Confidence 3578999999999999999998632 22 399999 566 45666677654 3455552 46
Q ss_pred ceeEEEEcCCCc-----CCHHHHh
Q 042171 66 NFDYAFMDADKD-----NYCNYMR 84 (125)
Q Consensus 66 ~fD~v~id~~~~-----~~~~~~~ 84 (125)
+-|+|++|++.. ...+|++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q 138 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQ 138 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHH
Confidence 899999998854 3456666
No 223
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.85 E-value=0.013 Score=43.22 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=24.6
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+|||||||||--+.++|+++| .-+-...|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD 56 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSD 56 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCC
Confidence 599999999999999999998 45555555
No 224
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.80 E-value=0.014 Score=45.35 Aligned_cols=69 Identities=13% Similarity=0.269 Sum_probs=36.4
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------C-CCCCcEEEEecchH-HHHHHHhhcCCCCCcee
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------A-RVDHKINFIESEAL-SVLDQLLKDSENEVNFD 68 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~-~~~~~i~~~~gd~~-~~l~~~~~~~~~~~~fD 68 (125)
-++||||||.-+.=..|+.+.. +=+++|.| . .+.++|+++..... .+++.+.. ..+.||
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD 179 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence 4789999977655433444443 57999999 3 78899999865433 23333321 246899
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
|.++ +|++++
T Consensus 180 ftmC------NPPFy~ 189 (299)
T PF05971_consen 180 FTMC------NPPFYS 189 (299)
T ss_dssp EEEE-----------S
T ss_pred EEec------CCcccc
Confidence 9997 666666
No 225
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.80 E-value=0.043 Score=43.40 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=53.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
....|||.=+|.|+.|+.+|+.-. .+|+|+| .++..+|+.++||+.+..+.+ ..+|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aD 258 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVAD 258 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCC
Confidence 467899999999999999999743 3399999 567778999999999997753 7899
Q ss_pred EEEEcCCC
Q 042171 69 YAFMDADK 76 (125)
Q Consensus 69 ~v~id~~~ 76 (125)
-|++..-+
T Consensus 259 rIim~~p~ 266 (341)
T COG2520 259 RIIMGLPK 266 (341)
T ss_pred EEEeCCCC
Confidence 99997665
No 226
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.68 E-value=0.062 Score=41.02 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=26.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..++||||+|.|-.|..|+.... +|++.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE 123 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATE 123 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeec
Confidence 567899999999999999999875 399999
No 227
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.64 E-value=0.016 Score=44.25 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
.+|++|||+|+|+|..+.......+.-.+++++|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd 65 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVD 65 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeec
Confidence 4789999999999987777766677456799999
No 228
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.64 E-value=0.031 Score=47.38 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=52.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----CCCCCcEEEEecchH-H----HHHHHhhcCCCCCceeEEEEcC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID----ARVDHKINFIESEAL-S----VLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----~~~~~~i~~~~gd~~-~----~l~~~~~~~~~~~~fD~v~id~ 74 (125)
++..|||+||.+|.|.-..++.+|.++-|+++| -++..-+++++ |.. + .+.... ...+.|+|+.|+
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~-dIttd~cr~~l~k~l----~t~~advVLhDg 118 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVE-DITTDECRSKLRKIL----KTWKADVVLHDG 118 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhh-hhhHHHHHHHHHHHH----HhCCCcEEeecC
Confidence 456789999999999999999999889999999 33333334333 332 2 222222 247789999999
Q ss_pred CCcCCHHHHh
Q 042171 75 DKDNYCNYMR 84 (125)
Q Consensus 75 ~~~~~~~~~~ 84 (125)
++.--..|..
T Consensus 119 apnVg~~w~~ 128 (780)
T KOG1098|consen 119 APNVGGNWVQ 128 (780)
T ss_pred CCccchhHHH
Confidence 9865444444
No 229
>PRK00536 speE spermidine synthase; Provisional
Probab=95.60 E-value=0.06 Score=41.08 Aligned_cols=60 Identities=8% Similarity=0.057 Sum_probs=44.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CCC-CCcEEEEecchHHHHHHHhhcCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------ARV-DHKINFIESEALSVLDQLLKDSENE 64 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~ 64 (125)
.+|++||-||.|-|..+..+++. + .+|+-+| .++ .+|++++.. . ... ..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~-----~~ 137 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDL-----DI 137 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhc-----cC
Confidence 46899999999999999999987 3 3898888 122 368888861 1 111 13
Q ss_pred CceeEEEEcCC
Q 042171 65 VNFDYAFMDAD 75 (125)
Q Consensus 65 ~~fD~v~id~~ 75 (125)
++||+|++|..
T Consensus 138 ~~fDVIIvDs~ 148 (262)
T PRK00536 138 KKYDLIICLQE 148 (262)
T ss_pred CcCCEEEEcCC
Confidence 68999999964
No 230
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.52 E-value=0.055 Score=39.89 Aligned_cols=73 Identities=26% Similarity=0.310 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhC---CCCCEEEEEe---------CCCCCcEEEEecchHHH-----HHHHhhcCCCC
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTI---PEDGQITAID---------ARVDHKINFIESEALSV-----LDQLLKDSENE 64 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~---~~~~~v~~iD---------~~~~~~i~~~~gd~~~~-----l~~~~~~~~~~ 64 (125)
..+|..|+|+|+-.|-|+++.|.-+ +...+|+++| +.-.++|.|++|+..+. ...+ ++ .
T Consensus 67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~-~~---~ 142 (237)
T COG3510 67 ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRL-KN---E 142 (237)
T ss_pred hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHH-hc---C
Confidence 4689999999999999999988743 3346899999 11136899999988752 1222 11 2
Q ss_pred CceeEEEEcCCCcC
Q 042171 65 VNFDYAFMDADKDN 78 (125)
Q Consensus 65 ~~fD~v~id~~~~~ 78 (125)
.+-=||++|+++..
T Consensus 143 y~kIfvilDsdHs~ 156 (237)
T COG3510 143 YPKIFVILDSDHSM 156 (237)
T ss_pred CCcEEEEecCCchH
Confidence 34457788988764
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.46 E-value=0.044 Score=40.98 Aligned_cols=76 Identities=17% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
..+||=+|.++|..--.++.-++++|.|+++| +.-..||--+.+|+..-. ... .--+..|+||.
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~-~Y~---~lv~~VDvI~~ 149 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE-KYR---MLVEMVDVIFQ 149 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG-GGT---TTS--EEEEEE
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH-Hhh---cccccccEEEe
Confidence 46999999999999999999998899999999 223467888888887421 111 11468999999
Q ss_pred cCCCcCCHHHHh
Q 042171 73 DADKDNYCNYMR 84 (125)
Q Consensus 73 d~~~~~~~~~~~ 84 (125)
|-+.+.-.+.+-
T Consensus 150 DVaQp~Qa~I~~ 161 (229)
T PF01269_consen 150 DVAQPDQARIAA 161 (229)
T ss_dssp E-SSTTHHHHHH
T ss_pred cCCChHHHHHHH
Confidence 999877655555
No 232
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.42 E-value=0.013 Score=43.49 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=43.1
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------------CCCCCcEEEEecchHHHHHHH
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------------ARVDHKINFIESEALSVLDQL 57 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------------~~~~~~i~~~~gd~~~~l~~~ 57 (125)
-.+.|||||.|-..+.++...| +.-|.+.| .+.-.++.+...++.-.+|++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~ 133 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF 133 (249)
T ss_pred ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence 3579999999999999999998 78899999 233467889999999888875
No 233
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.30 E-value=0.033 Score=45.68 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=35.7
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHH
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALS 52 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~ 52 (125)
..|||||||||..++..+++.. -.|+++| .|+.++|+++.-...+
T Consensus 68 v~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 3689999999999999888753 4599999 6788888887654443
No 234
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.86 E-value=0.12 Score=40.18 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=55.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
+|-+||||.||.|---+-.....|. .-.|.-.| .|+.+.++|.++||.+.- .+.. -....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~~---l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLAA---LDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhhc---cCCCC
Confidence 6779999999999999988888874 35788888 678777899999999852 2221 13457
Q ss_pred eEEEEcCCCcCCH
Q 042171 68 DYAFMDADKDNYC 80 (125)
Q Consensus 68 D~v~id~~~~~~~ 80 (125)
+++++.+-.+.++
T Consensus 211 ~l~iVsGL~ElF~ 223 (311)
T PF12147_consen 211 TLAIVSGLYELFP 223 (311)
T ss_pred CEEEEecchhhCC
Confidence 9999877655444
No 235
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.70 E-value=0.019 Score=41.92 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=39.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC----C----CCCEEEEEe---------------------------------------
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTI----P----EDGQITAID--------------------------------------- 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~----~----~~~~v~~iD--------------------------------------- 36 (125)
++-+|.-.||+||-=+-.||-.+ + .+-+|+|.|
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999995443333222 1 135899999
Q ss_pred ---CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171 37 ---ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR 84 (125)
Q Consensus 37 ---~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~ 84 (125)
..+.++|+|...|..+..+. .+.||+||+ +|..-||+
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~fD~I~C----RNVlIYF~ 150 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP-------FGRFDLIFC----RNVLIYFD 150 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------------EEEEEE-----SSGGGS-
T ss_pred eEChHHcCceEEEecccCCCCcc-------cCCccEEEe----cCEEEEeC
Confidence 01236899999999882222 478999998 66666776
No 236
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.59 E-value=0.074 Score=40.32 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=25.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|||+|+|+|.-++.+|... .++++.-|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD 116 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTD 116 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCC
Confidence 35689999999999999988865 47777777
No 237
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.45 E-value=0.045 Score=45.23 Aligned_cols=32 Identities=19% Similarity=-0.018 Sum_probs=26.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCC-------CCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPE-------DGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~-------~~~v~~iD 36 (125)
..+|||.|||+|...+.+++.++. .-.++++|
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~D 70 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFAD 70 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeec
Confidence 458999999999999999987742 14578888
No 238
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.28 E-value=0.041 Score=40.56 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
+.++|||+|+|+|.-++..+++- ...|++.| .-..-.|.+...|.... ...||++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~----------~~~~Dl~ 146 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGS----------PPAFDLL 146 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCC----------CcceeEE
Confidence 56899999999999999988873 35677777 11123466776666431 4679999
Q ss_pred EEc
Q 042171 71 FMD 73 (125)
Q Consensus 71 ~id 73 (125)
+..
T Consensus 147 Lag 149 (218)
T COG3897 147 LAG 149 (218)
T ss_pred Eee
Confidence 874
No 239
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.23 E-value=0.067 Score=43.46 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=48.2
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
..||||.++.+|-=|.+||.-+...|.|+|.| .|+ .+..+...|..+. |. +.. ..+||-
T Consensus 242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef-~~--~~~--~~~fDR 315 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREF-PE--KEF--PGSFDR 315 (460)
T ss_pred CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccc-cc--ccc--Ccccce
Confidence 45999999999999999999999889999999 344 3444555666543 21 000 237999
Q ss_pred EEEcCC
Q 042171 70 AFMDAD 75 (125)
Q Consensus 70 v~id~~ 75 (125)
|++||.
T Consensus 316 VLLDAP 321 (460)
T KOG1122|consen 316 VLLDAP 321 (460)
T ss_pred eeecCC
Confidence 999975
No 240
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.22 E-value=0.16 Score=37.36 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=39.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------------------CCC-CCcEEEEecchHHH--HHHHhhc
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID----------------------ARV-DHKINFIESEALSV--LDQLLKD 60 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------------------~~~-~~~i~~~~gd~~~~--l~~~~~~ 60 (125)
...+|||||.|-..++.|...+ -.+.++|| .+. ..++++.+||..+. ...+
T Consensus 44 dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~--- 119 (205)
T PF08123_consen 44 DVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI--- 119 (205)
T ss_dssp -EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH---
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh---
Confidence 4679999999999999887764 45699999 232 35789999998753 2222
Q ss_pred CCCCCceeEEEEcCC
Q 042171 61 SENEVNFDYAFMDAD 75 (125)
Q Consensus 61 ~~~~~~fD~v~id~~ 75 (125)
-..-|+||++..
T Consensus 120 ---~s~AdvVf~Nn~ 131 (205)
T PF08123_consen 120 ---WSDADVVFVNNT 131 (205)
T ss_dssp ---GHC-SEEEE--T
T ss_pred ---hcCCCEEEEecc
Confidence 134799998543
No 241
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=94.12 E-value=0.039 Score=42.32 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=41.8
Q ss_pred CCEEEEEcCcccHHHHHHHhhC------CCCCEEEEEe---------------CCCCC-cEEEEecchHHHHHHHhhcCC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTI------PEDGQITAID---------------ARVDH-KINFIESEALSVLDQLLKDSE 62 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~------~~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~~~~~~~ 62 (125)
..+|+|-+||+|...+.+.+.+ ....+++++| .+... ...+..+|.... +...
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~-~~~~---- 121 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN-DKFI---- 121 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS-HSCT----
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc-cccc----
Confidence 4579999999999999988754 1268899999 23222 346888887754 2210
Q ss_pred CCCceeEEEEc
Q 042171 63 NEVNFDYAFMD 73 (125)
Q Consensus 63 ~~~~fD~v~id 73 (125)
....||+|+.+
T Consensus 122 ~~~~~D~ii~N 132 (311)
T PF02384_consen 122 KNQKFDVIIGN 132 (311)
T ss_dssp ST--EEEEEEE
T ss_pred cccccccccCC
Confidence 13689999974
No 242
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.06 E-value=0.38 Score=37.62 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
...++|.--|.|--|..+++++++ ++|+++| ....+|+.+++++-.+....+... .....+|.|+
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~-~~~~~~dgiL 98 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL-NGINKVDGIL 98 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT-TTTS-EEEEE
T ss_pred CceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc-cCCCccCEEE
Confidence 447799888999999999999995 9999999 345689999999987764444321 1236899999
Q ss_pred EcCCCcCC
Q 042171 72 MDADKDNY 79 (125)
Q Consensus 72 id~~~~~~ 79 (125)
+|-..+.+
T Consensus 99 ~DLGvSS~ 106 (310)
T PF01795_consen 99 FDLGVSSM 106 (310)
T ss_dssp EE-S--HH
T ss_pred EccccCHH
Confidence 99876543
No 243
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.28 Score=36.45 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=59.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHH--HHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVL--DQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l--~~~~~~~~~~~~fD~ 69 (125)
+..+||=+|..+|...-.++.-++ +|.++++| +.-..|+--+.+||..-. ..+ -+..|+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~------Ve~VDv 148 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHL------VEKVDV 148 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhh------cccccE
Confidence 456999999999999999999998 89999999 222456777888886421 222 367999
Q ss_pred EEEcCCCcCCHHHHhhh
Q 042171 70 AFMDADKDNYCNYMREQ 86 (125)
Q Consensus 70 v~id~~~~~~~~~~~~~ 86 (125)
||.|-+.++-.+.+..|
T Consensus 149 iy~DVAQp~Qa~I~~~N 165 (231)
T COG1889 149 IYQDVAQPNQAEILADN 165 (231)
T ss_pred EEEecCCchHHHHHHHH
Confidence 99999998877766644
No 244
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.78 E-value=0.033 Score=45.97 Aligned_cols=62 Identities=8% Similarity=0.030 Sum_probs=37.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--CCCCCcEEEEecch---------HHHHHHHhhcCCCCCceeEEEEcC
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID--ARVDHKINFIESEA---------LSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--~~~~~~i~~~~gd~---------~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
+.+||||||+|.++..|.+. +-..+++- .....+++|...-. ..-||. .++.||+|.+..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPf------p~~~fDmvHcsr 189 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPF------PSNAFDMVHCSR 189 (506)
T ss_pred EEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhcCcchhhhhhccccccC------Cccchhhhhccc
Confidence 46799999999999998876 44455554 12223344432111 112332 368999999865
Q ss_pred CC
Q 042171 75 DK 76 (125)
Q Consensus 75 ~~ 76 (125)
+.
T Consensus 190 c~ 191 (506)
T PF03141_consen 190 CL 191 (506)
T ss_pred cc
Confidence 43
No 245
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.50 E-value=0.035 Score=42.08 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=27.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPE-DGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD 36 (125)
+.+|||||||.|-+..-+.+..++ +-+|+++|
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acD 104 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACD 104 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcC
Confidence 347999999999999999988763 37899999
No 246
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=93.40 E-value=0.31 Score=38.39 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=37.3
Q ss_pred CCCEEEEEcCcccH-HHHHHHhhCCCCCEEEEEe------------C-----C-------CCCcEEEEecchHHHHHHHh
Q 042171 4 KLKKTIEIGVFTGY-SLFLTALTIPEDGQITAID------------A-----R-------VDHKINFIESEALSVLDQLL 58 (125)
Q Consensus 4 ~~~~vLeiG~g~G~-~t~~la~~~~~~~~v~~iD------------~-----~-------~~~~i~~~~gd~~~~l~~~~ 58 (125)
+..+|||+|||-|- ..-|.... -.+++++| . + ..-...++.+|+... .+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~---i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~--~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK---IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE--SLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS--HHH
T ss_pred CCCeEEEecCCCchhHHHHHhcC---CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc--hhh
Confidence 46799999999555 55565432 47899999 1 1 123567788888642 111
Q ss_pred hcCCC-CCceeEEEEc
Q 042171 59 KDSEN-EVNFDYAFMD 73 (125)
Q Consensus 59 ~~~~~-~~~fD~v~id 73 (125)
....+ ..+||+|-+=
T Consensus 137 ~~~~~~~~~FDvVScQ 152 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQ 152 (331)
T ss_dssp CTSSSTTS-EEEEEEE
T ss_pred hhccccCCCcceeehH
Confidence 11111 2589999863
No 247
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.94 E-value=1.5 Score=34.40 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=55.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
...+|.--|-|--+-.+.+.+++.++++++| ..+.+|+++++++-.+....+... ....+|-|+.
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~--~i~~vDGiL~ 102 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKEL--GIGKVDGILL 102 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhc--CCCceeEEEE
Confidence 4668887888888999999998889999999 445689999999887664433221 2468999999
Q ss_pred cCCCcCC
Q 042171 73 DADKDNY 79 (125)
Q Consensus 73 d~~~~~~ 79 (125)
|-..+++
T Consensus 103 DLGVSS~ 109 (314)
T COG0275 103 DLGVSSP 109 (314)
T ss_pred eccCCcc
Confidence 9776554
No 248
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.75 E-value=0.67 Score=36.29 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=74.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-----------------CCC-CCcEEEEecchHHHHHHHhhcCCCCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-----------------ARV-DHKINFIESEALSVLDQLLKDSENEV 65 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-----------------~~~-~~~i~~~~gd~~~~l~~~~~~~~~~~ 65 (125)
+|++||-||-|-|-...--++. +.=+.+.-+| .+. .++|.++.||....+... +.+
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-----~~~ 194 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-----KEN 194 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-----ccC
Confidence 6889999999988877666665 4335555555 333 368999999999988765 268
Q ss_pred ceeEEEEcCCCcCCH-------HHHhhh---C---------CCC---CCcchHHHHHHHHHHhhcCCCeEEEEeec
Q 042171 66 NFDYAFMDADKDNYC-------NYMREQ---V---------PDH---FRGSSKQAILDLNRSLVDDPCVQLSHVAL 119 (125)
Q Consensus 66 ~fD~v~id~~~~~~~-------~~~~~~---~---------~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 119 (125)
+||.|+.|.+..--+ +|++.. . .+. ... ..+.+++|-..+..--.+-.+..|+
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~-~i~e~r~~~~~~f~~t~ya~ttvPT 269 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLD-YIKEGRSFCYVIFDLTAYAITTVPT 269 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHH-HHHHHHHhHHHhcCccceeeecCCC
Confidence 999999998765432 344421 1 111 111 4555777777787777788888775
No 249
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=92.18 E-value=0.52 Score=35.12 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=38.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------C-CCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------A-RVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~-~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
+..+.||.|+|.|-.|--+...+ --+|..+| . +.....++...-.+++-|. ..+||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~-------~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE-------EGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----------TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC-------CCcEeE
Confidence 45689999999999998765433 35788888 1 1223466777777777664 478999
Q ss_pred EEEcCC
Q 042171 70 AFMDAD 75 (125)
Q Consensus 70 v~id~~ 75 (125)
|++--.
T Consensus 126 IW~QW~ 131 (218)
T PF05891_consen 126 IWIQWC 131 (218)
T ss_dssp EEEES-
T ss_pred EEehHh
Confidence 998544
No 250
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.07 E-value=0.25 Score=37.55 Aligned_cols=60 Identities=15% Similarity=0.011 Sum_probs=36.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
.|.+|+|||||.=-.++...... ++..++++| .-+..+.++...|.....| ..+.|+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~--------~~~~Dla 175 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP--------KEPADLA 175 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT--------TSEESEE
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC--------CCCcchh
Confidence 37899999999888887655433 368999999 1233345555556654422 4678888
Q ss_pred EE
Q 042171 71 FM 72 (125)
Q Consensus 71 ~i 72 (125)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 85
No 251
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=91.75 E-value=0.28 Score=33.30 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=26.7
Q ss_pred CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC-CcCCHHHHh
Q 042171 41 HKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD-KDNYCNYMR 84 (125)
Q Consensus 41 ~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~-~~~~~~~~~ 84 (125)
-++++..||+.+.++.+ ...||.+|.|+- ...+|+.+.
T Consensus 31 v~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs 69 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWS 69 (124)
T ss_dssp EEEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSS
T ss_pred EEEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCC
Confidence 46889999999999987 478999999974 455665544
No 252
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.64 E-value=0.43 Score=38.33 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=46.3
Q ss_pred CEEEEEcCcccHHHHHHHhhCCC-------------------------------CC-------EEEEEe-----------
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPE-------------------------------DG-------QITAID----------- 36 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~-------------------------------~~-------~v~~iD----------- 36 (125)
..++|-=||+|...+-.|...++ .+ .++++|
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 46788899999999987765431 11 378999
Q ss_pred ----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 37 ----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 37 ----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
+|+.+.|+|.++|+...-+. -+.+|+|++
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~ 305 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEP-------LEEYGVVIS 305 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEe
Confidence 89999999999999866221 268999996
No 253
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=89.84 E-value=0.62 Score=29.27 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=36.0
Q ss_pred EEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCC--CCc--EEEEecchHHH-HHHHhhcCCCC-CceeEEE
Q 042171 8 TIEIGVFTGYSLFLTALTIPEDGQITAID----------ARV--DHK--INFIESEALSV-LDQLLKDSENE-VNFDYAF 71 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~--~~~--i~~~~gd~~~~-l~~~~~~~~~~-~~fD~v~ 71 (125)
++|+|||+|..+ .++...+....++++| ... ... +.+..++.... ++.. . ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFE------DSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCC------CCCceeEEe
Confidence 999999999988 4454443224888899 000 111 57777777652 3321 2 3799994
Q ss_pred E
Q 042171 72 M 72 (125)
Q Consensus 72 i 72 (125)
.
T Consensus 125 ~ 125 (257)
T COG0500 125 S 125 (257)
T ss_pred e
Confidence 3
No 254
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=89.59 E-value=1.7 Score=30.70 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
+.-|||+|-|-|-.==.|.+.+| +-+|+.+| +-..+.-.++.||+.++++.+..- ..+.-++..|-..
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~---g~~a~laHaD~G~ 103 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARF---GAGAALAHADIGT 103 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH----S-EEEEEE----
T ss_pred CCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhc---CCceEEEEeecCC
Confidence 46799999999999889999998 79999999 222344568999999998873211 3567777777554
No 255
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=89.45 E-value=1.4 Score=35.39 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=50.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCC-cEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDH-KINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~-~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
+-+|||.=+|+|.=++..++.++...+|++-| .++.+ ++++.+.|+...+.. ....||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD 123 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERFD 123 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-EE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccCC
Confidence 44899999999999999999986557899999 56666 799999999987642 157899
Q ss_pred EEEEcCCCcCCHHHHh
Q 042171 69 YAFMDADKDNYCNYMR 84 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~ 84 (125)
+|=+|.-- ...+|++
T Consensus 124 ~IDlDPfG-Sp~pfld 138 (377)
T PF02005_consen 124 VIDLDPFG-SPAPFLD 138 (377)
T ss_dssp EEEE--SS---HHHHH
T ss_pred EEEeCCCC-CccHhHH
Confidence 99998654 3345555
No 256
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=88.62 E-value=1.1 Score=28.12 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=20.0
Q ss_pred CCCCEEEEEcCcccHHHH-HHHhhCCCCCEEEEE
Q 042171 3 LKLKKTIEIGVFTGYSLF-LTALTIPEDGQITAI 35 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~-~la~~~~~~~~v~~i 35 (125)
..|++||-||+.+||-.. .++.++.-++.-++|
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV 70 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGV 70 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEE
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEE
Confidence 468999999999999654 355555545555444
No 257
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.59 E-value=1.1 Score=34.05 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC----CCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIP----EDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~----~~~~v~~iD 36 (125)
+...++|.|||.|..+.|++..++ +...++.||
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lID 54 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLID 54 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEe
Confidence 345789999999999999999985 247899999
No 258
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=0.16 Score=36.59 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.1
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+.++|||+|.| +|.+++.+|...+ ...|.-.|
T Consensus 29 rg~~ilelgggft~laglmia~~a~-~~~v~ltd 61 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAP-DSSVWLTD 61 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecC-CceEEEec
Confidence 45789999976 6888888888887 67888888
No 259
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=87.23 E-value=0.58 Score=36.18 Aligned_cols=32 Identities=19% Similarity=0.043 Sum_probs=21.3
Q ss_pred CCEEEEEcCcccHHHHH----HHhhCC---CCCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFL----TALTIP---EDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~----la~~~~---~~~~v~~iD 36 (125)
+-+|.-.||+||-=+-. +.+..+ .+-+|+|+|
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atD 154 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASD 154 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEE
Confidence 45899999999954333 333332 135799999
No 260
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.24 E-value=1.1 Score=34.34 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=52.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
...+||=+|+++|.+--..+..+.+++-|+++| +.-..+|.-+..|+.---. ...--.-.|.||
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~K----YRmlVgmVDvIF 231 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAK----YRMLVGMVDVIF 231 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchh----eeeeeeeEEEEe
Confidence 346899999999999999999998899999999 2233556556667653211 001135689999
Q ss_pred EcCCCcCCH
Q 042171 72 MDADKDNYC 80 (125)
Q Consensus 72 id~~~~~~~ 80 (125)
.|-+++...
T Consensus 232 aDvaqpdq~ 240 (317)
T KOG1596|consen 232 ADVAQPDQA 240 (317)
T ss_pred ccCCCchhh
Confidence 998876543
No 261
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=85.55 E-value=1.9 Score=33.14 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=26.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||--|||.|-.+.-+|+. +-.+.+.|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE 85 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNE 85 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEE
Confidence 4569999999999999999987 67899999
No 262
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=84.27 E-value=2.9 Score=33.35 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------------CCCCCcEEEEecchHHH-HHHHhhc
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------------ARVDHKINFIESEALSV-LDQLLKD 60 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------------~~~~~~i~~~~gd~~~~-l~~~~~~ 60 (125)
+.+...++++|||-|--.+-.-++- -++++++| ..+.-.+.|+.+|+... |-.+..
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e- 191 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE- 191 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc-
Confidence 4456788999999888777666542 37899999 11223578899998753 222211
Q ss_pred CCCCCceeEEEEcCC
Q 042171 61 SENEVNFDYAFMDAD 75 (125)
Q Consensus 61 ~~~~~~fD~v~id~~ 75 (125)
.++.+||+|-+-.+
T Consensus 192 -~~dp~fDivScQF~ 205 (389)
T KOG1975|consen 192 -FKDPRFDIVSCQFA 205 (389)
T ss_pred -CCCCCcceeeeeee
Confidence 12344999987444
No 263
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=84.00 E-value=3.5 Score=30.75 Aligned_cols=95 Identities=14% Similarity=0.247 Sum_probs=49.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC--CcCCHHH
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID-ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD--KDNYCNY 82 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~--~~~~~~~ 82 (125)
..|-|+|||-+-.+ ++++..-+|.+.| ....++| +..|.... |. ++++.|+++.--+ ..+|+.|
T Consensus 74 ~viaD~GCGdA~la----~~~~~~~~V~SfDLva~n~~V--tacdia~v-PL------~~~svDv~VfcLSLMGTn~~~f 140 (219)
T PF05148_consen 74 LVIADFGCGDAKLA----KAVPNKHKVHSFDLVAPNPRV--TACDIANV-PL------EDESVDVAVFCLSLMGTNWPDF 140 (219)
T ss_dssp S-EEEES-TT-HHH----HH--S---EEEEESS-SSTTE--EES-TTS--S--------TT-EEEEEEES---SS-HHHH
T ss_pred EEEEECCCchHHHH----HhcccCceEEEeeccCCCCCE--EEecCccC-cC------CCCceeEEEEEhhhhCCCcHHH
Confidence 47899999998766 5565456899999 3333454 44777544 53 2688999987544 3467777
Q ss_pred Hhhh---C-C------CCCCcchHHHHHHHHHHhhcCCCeEEE
Q 042171 83 MREQ---V-P------DHFRGSSKQAILDLNRSLVDDPCVQLS 115 (125)
Q Consensus 83 ~~~~---~-~------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (125)
+++. + + ...+ +....+++|.+.+..- +|+..
T Consensus 141 i~EA~RvLK~~G~L~IAEV~-SRf~~~~~F~~~~~~~-GF~~~ 181 (219)
T PF05148_consen 141 IREANRVLKPGGILKIAEVK-SRFENVKQFIKALKKL-GFKLK 181 (219)
T ss_dssp HHHHHHHEEEEEEEEEEEEG-GG-S-HHHHHHHHHCT-TEEEE
T ss_pred HHHHHheeccCcEEEEEEec-ccCcCHHHHHHHHHHC-CCeEE
Confidence 7743 1 1 0112 2444578888888654 55443
No 264
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=83.30 E-value=1.8 Score=35.23 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
....|+|+|.|.|+.+..|+... +-.|++||
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIe 183 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIE 183 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc--CceEEEec
Confidence 45689999999999999999876 58899999
No 265
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=83.23 E-value=9.9 Score=29.85 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=46.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCC---CCEEEEEe----------CCCC----CcEEE--EecchHHHHHHHhhcCCCCC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPE---DGQITAID----------ARVD----HKINF--IESEALSVLDQLLKDSENEV 65 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~---~~~v~~iD----------~~~~----~~i~~--~~gd~~~~l~~~~~~~~~~~ 65 (125)
...++|+|||.|.=+..|.+++.+ ..+.+++| ..+. +.+++ +.||-.+.+..+.+......
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 347999999999999888888742 35789999 1222 34555 78888776543321000122
Q ss_pred ceeEEEEcCCCcCCH
Q 042171 66 NFDYAFMDADKDNYC 80 (125)
Q Consensus 66 ~fD~v~id~~~~~~~ 80 (125)
+--+.|....-.|+.
T Consensus 157 ~r~~~flGSsiGNf~ 171 (319)
T TIGR03439 157 PTTILWLGSSIGNFS 171 (319)
T ss_pred ccEEEEeCccccCCC
Confidence 334445555555554
No 266
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=82.53 E-value=0.86 Score=36.73 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=16.9
Q ss_pred CCCEEEEEcCcccHHHHHHHh
Q 042171 4 KLKKTIEIGVFTGYSLFLTAL 24 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~ 24 (125)
++-+|+|+|||+|..|+.+..
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred cceeEEEecCCCCccHHHHHH
Confidence 356899999999999876543
No 267
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.65 E-value=2.3 Score=28.65 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=18.0
Q ss_pred EEcCccc--HHHHHHHh-hCCCCCEEEEEe
Q 042171 10 EIGVFTG--YSLFLTAL-TIPEDGQITAID 36 (125)
Q Consensus 10 eiG~g~G--~~t~~la~-~~~~~~~v~~iD 36 (125)
|||+..| .++.++++ ...++++|+++|
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~E 30 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFE 30 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEE
Confidence 7999999 77776653 455579999999
No 268
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=81.54 E-value=4.2 Score=32.43 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=40.4
Q ss_pred EEEEcCcccHHHHHHHhhCC-CCCEEEEEe---------------CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEE
Q 042171 8 TIEIGVFTGYSLFLTALTIP-EDGQITAID---------------ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYA 70 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---------------~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v 70 (125)
-+|||+ |.+.++-+.... .+-..+++| .++.+++.+++-+.... ++...+. ..+..|||+
T Consensus 106 GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFc 182 (419)
T KOG2912|consen 106 GIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFC 182 (419)
T ss_pred eeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEE
Confidence 367776 677776655442 234566666 45667888888766553 2221111 123569999
Q ss_pred EEcCCCcCCHHHHh
Q 042171 71 FMDADKDNYCNYMR 84 (125)
Q Consensus 71 ~id~~~~~~~~~~~ 84 (125)
.+ +|++|+
T Consensus 183 Mc------NPPFfe 190 (419)
T KOG2912|consen 183 MC------NPPFFE 190 (419)
T ss_pred ec------CCchhh
Confidence 85 677776
No 269
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=81.18 E-value=4 Score=31.52 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=36.6
Q ss_pred CEEEEEcCcc----cHHHHHHHhhCCCCCEEEEEe--CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171 6 KKTIEIGVFT----GYSLFLTALTIPEDGQITAID--ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 6 ~~vLeiG~g~----G~~t~~la~~~~~~~~v~~iD--~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
.+||-+|.|+ .--+.-|.+-+|+++.++-.| .-+.+.-..+.+|.....+ +..||+||+|.-
T Consensus 63 MrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~--------~~k~DlIiSDmY 130 (299)
T PF06460_consen 63 MRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSDADQSIVGDCRTYMP--------PDKFDLIISDMY 130 (299)
T ss_dssp -EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-SSSEEEES-GGGEEE--------SS-EEEEEE---
T ss_pred cEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccccCCceeccccccCC--------CCcccEEEEecc
Confidence 4899999764 335667788889888999999 2234455678899986633 578999999854
No 270
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=81.13 E-value=1.7 Score=36.05 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=53.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe------------CCCC--CcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID------------ARVD--HKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD------------~~~~--~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
...+|-||-|.|....++-..+| ..+++++| .++. .|..++..|+.+.+..+.+...+..-||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 45678888888999999888888 79999999 2332 357788888988877776542235679999
Q ss_pred EEcCCCc
Q 042171 71 FMDADKD 77 (125)
Q Consensus 71 ~id~~~~ 77 (125)
+.|.+-.
T Consensus 375 ~~dvds~ 381 (482)
T KOG2352|consen 375 MVDVDSK 381 (482)
T ss_pred EEECCCC
Confidence 9986643
No 271
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=80.81 E-value=5.5 Score=29.95 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=36.1
Q ss_pred cccHHHHHHHhh--C-CCCCEEEEEe-----------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 14 FTGYSLFLTALT--I-PEDGQITAID-----------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 14 g~G~~t~~la~~--~-~~~~~v~~iD-----------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
|.|-+|..++.+ + ..+.+|.-|| ..+.+++.+...+-...+....... ....||||++|
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a-~~~~~d~VlvD 90 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAA-EASGFDFVLVD 90 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHH-HhcCCCEEEEe
Confidence 667777765553 3 2478999999 1234566666655443433321100 12459999999
Q ss_pred CCC
Q 042171 74 ADK 76 (125)
Q Consensus 74 ~~~ 76 (125)
...
T Consensus 91 leG 93 (231)
T PF07015_consen 91 LEG 93 (231)
T ss_pred CCC
Confidence 754
No 272
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=80.27 E-value=2.1 Score=32.75 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------CCCCC---cEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------ARVDH---KINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------~~~~~---~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
...++||||+-|+....+...- -.+++-+| .+.++ .+....+|-+ .|+ + .++++|+|+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE-~Ld-f-----~ens~DLiis 143 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEE-FLD-F-----KENSVDLIIS 143 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchh-ccc-c-----cccchhhhhh
Confidence 3568999999999988776542 36788888 22221 2444566654 445 4 2689999997
Q ss_pred cCC---CcCCHHHHh
Q 042171 73 DAD---KDNYCNYMR 84 (125)
Q Consensus 73 d~~---~~~~~~~~~ 84 (125)
.-. ....|.++.
T Consensus 144 SlslHW~NdLPg~m~ 158 (325)
T KOG2940|consen 144 SLSLHWTNDLPGSMI 158 (325)
T ss_pred hhhhhhhccCchHHH
Confidence 643 334455554
No 273
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=79.51 E-value=2.8 Score=31.28 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=25.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCC-------CCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPE-------DGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~-------~~~v~~iD 36 (125)
+-+|+|+|.|+|..+.-+++.+.. ..+++-||
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE 57 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVE 57 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEc
Confidence 468999999999999999998763 25899999
No 274
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=78.73 E-value=4.5 Score=32.22 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=43.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEec-chHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIES-EALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~g-d~~~~l~~~~~~~~~~~~f 67 (125)
+...|||==||||...+....- +++++++| .++ +...++.. |+... | |. +++|
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i-~~~~~~~~~Da~~l-p-l~-----~~~v 265 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGI-EDYPVLKVLDATNL-P-LR-----DNSV 265 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCc-CceeEEEecccccC-C-CC-----CCcc
Confidence 4458999999999999887653 79999999 233 33444555 88765 4 52 4579
Q ss_pred eEEEEcC
Q 042171 68 DYAFMDA 74 (125)
Q Consensus 68 D~v~id~ 74 (125)
|.|..|-
T Consensus 266 daIatDP 272 (347)
T COG1041 266 DAIATDP 272 (347)
T ss_pred ceEEecC
Confidence 9999864
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.58 E-value=5.2 Score=31.77 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=42.0
Q ss_pred CCEEEEEcC-cccHHHHHHHhhCCCCCEEEEEe---------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171 5 LKKTIEIGV-FTGYSLFLTALTIPEDGQITAID---------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 5 ~~~vLeiG~-g~G~~t~~la~~~~~~~~v~~iD---------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
.++|+-+|. |.|..++.+|+++. .+|+++| ..+. .-.++.+.-.+..+.+ .+.||+|+.-.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lG-Ad~~i~~~~~~~~~~~------~~~~d~ii~tv 237 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLG-ADHVINSSDSDALEAV------KEIADAIIDTV 237 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhC-CcEEEEcCCchhhHHh------HhhCcEEEECC
Confidence 456666665 57788999999985 9999999 1121 1223332222233333 23499998766
Q ss_pred CCcCCHHHHh
Q 042171 75 DKDNYCNYMR 84 (125)
Q Consensus 75 ~~~~~~~~~~ 84 (125)
....+.++++
T Consensus 238 ~~~~~~~~l~ 247 (339)
T COG1064 238 GPATLEPSLK 247 (339)
T ss_pred ChhhHHHHHH
Confidence 6444455555
No 276
>PRK13699 putative methylase; Provisional
Probab=77.58 E-value=2.5 Score=31.39 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=22.4
Q ss_pred EEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 43 INFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 43 i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
++++.||+.+.++.+. ++++|+|+.|
T Consensus 2 ~~l~~gD~le~l~~lp-----d~SVDLIiTD 27 (227)
T PRK13699 2 SRFILGNCIDVMARFP-----DNAVDFILTD 27 (227)
T ss_pred CeEEechHHHHHHhCC-----ccccceEEeC
Confidence 4788999999988873 6899999987
No 277
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=77.12 E-value=5.1 Score=32.19 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=27.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC---CCCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIP---EDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~---~~~~v~~iD 36 (125)
..+|||.|+.+|.-|+.|.+++- +.|.|++-|
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND 190 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVAND 190 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecc
Confidence 45899999999999999999873 257999999
No 278
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=76.96 E-value=8.6 Score=29.17 Aligned_cols=62 Identities=24% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
..++||=+|=.--. ++++|...+ ..+|+.+| .++. |+.++.|..+-+|.-. .++||
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD 114 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFD 114 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BS
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCC
Confidence 46789999855443 344444333 47888888 3553 9999999999888621 48899
Q ss_pred EEEEcC
Q 042171 69 YAFMDA 74 (125)
Q Consensus 69 ~v~id~ 74 (125)
.+|.|-
T Consensus 115 ~f~TDP 120 (243)
T PF01861_consen 115 VFFTDP 120 (243)
T ss_dssp EEEE--
T ss_pred EEEeCC
Confidence 999863
No 279
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=76.83 E-value=1 Score=37.46 Aligned_cols=69 Identities=22% Similarity=0.126 Sum_probs=53.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
++-+|||.=+++|.-++..|+.++.-.+|++-| .+..+.++..++|+....-... .....||
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~---~~~~~FD 185 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP---MVAKFFD 185 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc---ccccccc
Confidence 466899999999999999999998557888888 3456778889999987643211 1247899
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
+|-+|--
T Consensus 186 vIDLDPy 192 (525)
T KOG1253|consen 186 VIDLDPY 192 (525)
T ss_pred eEecCCC
Confidence 9999844
No 280
>PLN02427 UDP-apiose/xylose synthase
Probab=76.63 E-value=11 Score=29.58 Aligned_cols=66 Identities=18% Similarity=0.118 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCC--CEEEEEeC---------C-----CCCcEEEEecchHHH--HHHHhhcCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPED--GQITAIDA---------R-----VDHKINFIESEALSV--LDQLLKDSENE 64 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~--~~v~~iD~---------~-----~~~~i~~~~gd~~~~--l~~~~~~~~~~ 64 (125)
.++.+||-.| |+|+.+..+++.+-+. -+|+++|. . ...+++++.+|..+. +..+ -
T Consensus 12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~------~ 84 (386)
T PLN02427 12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL------I 84 (386)
T ss_pred ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHH------h
Confidence 3567888766 5799999999887533 47999991 0 123689999988753 2222 2
Q ss_pred CceeEEEEcCC
Q 042171 65 VNFDYAFMDAD 75 (125)
Q Consensus 65 ~~fD~v~id~~ 75 (125)
..+|.||-=++
T Consensus 85 ~~~d~ViHlAa 95 (386)
T PLN02427 85 KMADLTINLAA 95 (386)
T ss_pred hcCCEEEEccc
Confidence 34898885444
No 281
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=76.28 E-value=4 Score=30.35 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=29.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
...|+|+=-|.||+|..++.++++.|+|++.-
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~ 80 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYV 80 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEec
Confidence 35899999999999999999998889999886
No 282
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=75.64 E-value=2.4 Score=32.77 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=25.1
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|....++|||+|||+|.-.+.....- ...++..|
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD 146 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKG--AVSVHFQD 146 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhc--cceeeeEe
Confidence 34567899999999999888866542 24566666
No 283
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.53 E-value=6 Score=25.70 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=34.6
Q ss_pred cccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171 14 FTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 14 g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
|.|..++.+|++.+ .+|+++| .|...-+.....+..+.+..+. ....+|.||--..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccccccccccccccccccccc----ccccceEEEEecC
Confidence 46899999999986 9999999 3322122222333444444442 1347999985443
No 284
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=75.30 E-value=3.2 Score=32.31 Aligned_cols=61 Identities=11% Similarity=0.241 Sum_probs=48.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCC-----C--CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAIDAR-----V--DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~-----~--~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
..-+|+|..+|-||..+.+. +-.|++||.| + ..+|+....|...+-|. ..+.|-.++|.-.
T Consensus 213 M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~-------r~~idWmVCDmVE 280 (358)
T COG2933 213 MWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPT-------RSNIDWMVCDMVE 280 (358)
T ss_pred ceeeecccCCCccchhhhhc---ceEEEEeccchhhhhhhcccceeeeeccCcccccC-------CCCCceEEeehhc
Confidence 36799999999999998876 7899999922 1 25789999999877552 4679999998753
No 285
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=74.98 E-value=20 Score=27.07 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=45.0
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---C------------CCCCcEEEEecchHHH--HHHHhhcCC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID---A------------RVDHKINFIESEALSV--LDQLLKDSE 62 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---~------------~~~~~i~~~~gd~~~~--l~~~~~~~~ 62 (125)
|+-+.++||-.| |+|..+..+++.+- .+.+|+++. . +...+++++.+|..+. +..+.
T Consensus 1 ~~~~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~---- 75 (325)
T PLN02989 1 MADGGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI---- 75 (325)
T ss_pred CCCCCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH----
Confidence 566778899888 57888888888764 345776654 1 1123688888888753 23321
Q ss_pred CCCceeEEEEcCC
Q 042171 63 NEVNFDYAFMDAD 75 (125)
Q Consensus 63 ~~~~fD~v~id~~ 75 (125)
..+|.|+.-++
T Consensus 76 --~~~d~vih~A~ 86 (325)
T PLN02989 76 --DGCETVFHTAS 86 (325)
T ss_pred --cCCCEEEEeCC
Confidence 34798887665
No 286
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=74.22 E-value=32 Score=26.05 Aligned_cols=58 Identities=12% Similarity=0.023 Sum_probs=38.9
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
+++|+-||.|..++-+.++ + --.+.++| ..+.+ .++.+|..+..+.-. ...+|+++.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~--~~~~~Di~~~~~~~~-----~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPN--KLIEGDITKIDEKDF-----IPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCC--CCccCccccCchhhc-----CCCCCEEEeC
Confidence 6899999999998888765 2 23478899 22222 256778776643210 2469999975
No 287
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=74.18 E-value=3.5 Score=27.53 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=21.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
++...+|||||.|...--|.+. +-+=.++|
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD 87 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGID 87 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCccccc
Confidence 4567899999999988776653 33446777
No 288
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.69 E-value=17 Score=28.97 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=27.9
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
...+||-+|+|+ |..|+..|++++ ..+|+.+|
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d 201 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITD 201 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEee
Confidence 346899999995 899999999998 68999999
No 289
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.59 E-value=25 Score=26.77 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe------CCC--CCcEEEEecc---hHH---HHHHHhhcCCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID------ARV--DHKINFIESE---ALS---VLDQLLKDSENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD------~~~--~~~i~~~~gd---~~~---~l~~~~~~~~~~~~f 67 (125)
.+++.||-.||..|-.+-.+|+.+. ++.+|++.- +.+ ..++...+-| -++ ...++.++ +.++.
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~--~~Gkl 82 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRAN--PDGKL 82 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhC--CCCce
Confidence 4688999999999999999999874 356888877 111 1122222222 222 22334433 36899
Q ss_pred eEEEEcCCCcCCHHHHh
Q 042171 68 DYAFMDADKDNYCNYMR 84 (125)
Q Consensus 68 D~v~id~~~~~~~~~~~ 84 (125)
|+.+-++....--+.++
T Consensus 83 d~L~NNAG~~C~~Pa~d 99 (289)
T KOG1209|consen 83 DLLYNNAGQSCTFPALD 99 (289)
T ss_pred EEEEcCCCCCccccccc
Confidence 99998877665444433
No 290
>PRK11524 putative methyltransferase; Provisional
Probab=72.57 E-value=4.4 Score=30.88 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=23.5
Q ss_pred CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171 41 HKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 41 ~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
...+++.||+.+.+..+. .++||+|++|-.
T Consensus 7 ~~~~i~~gD~~~~l~~l~-----~~siDlIitDPP 36 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP-----SESVDLIFADPP 36 (284)
T ss_pred CCCEEEeccHHHHHHhcc-----cCcccEEEECCC
Confidence 356789999999877662 578999999743
No 291
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=71.56 E-value=7.8 Score=24.80 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=38.6
Q ss_pred CcccHHHHHHHhhCCCCC-EEEEEeCC-------CCCcEEEEecchHHH--HHHHhhcCCCCCceeEEEEcCC
Q 042171 13 VFTGYSLFLTALTIPEDG-QITAIDAR-------VDHKINFIESEALSV--LDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 13 ~g~G~~t~~la~~~~~~~-~v~~iD~~-------~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~v~id~~ 75 (125)
||.|..+..+++.+.+++ +++.+|.. ....+.++.||+.+. +... .-...|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERA-----GIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT-----TGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhc-----CccccCEEEEccC
Confidence 456889999999886666 89999911 112377899999864 3332 1367898888655
No 292
>PRK08264 short chain dehydrogenase; Validated
Probab=71.43 E-value=22 Score=25.36 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-CCC-EEEEEe---CC---CCCcEEEEecchHHH--HHHHhhcCCCCCceeEE
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIP-EDG-QITAID---AR---VDHKINFIESEALSV--LDQLLKDSENEVNFDYA 70 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~-~~~-~v~~iD---~~---~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~v 70 (125)
|..+.++||-+|+ +|..+..+++.+- .+. +|+.++ .. ...++.++.+|..+. +..+... ..+.|.|
T Consensus 2 ~~~~~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~id~v 77 (238)
T PRK08264 2 MDIKGKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEA---ASDVTIL 77 (238)
T ss_pred CCCCCCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHh---cCCCCEE
Confidence 3456678898885 6777777777653 344 788888 11 224688888887643 2222211 2468999
Q ss_pred EEcCCC
Q 042171 71 FMDADK 76 (125)
Q Consensus 71 ~id~~~ 76 (125)
+..+..
T Consensus 78 i~~ag~ 83 (238)
T PRK08264 78 VNNAGI 83 (238)
T ss_pred EECCCc
Confidence 987765
No 293
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=70.83 E-value=9.3 Score=29.37 Aligned_cols=50 Identities=10% Similarity=0.220 Sum_probs=27.7
Q ss_pred CCCEEEEEcCccc--HHHHHHHhhCCCCCEEEEEe-------------CCCC-CcEEEEecchHHH
Q 042171 4 KLKKTIEIGVFTG--YSLFLTALTIPEDGQITAID-------------ARVD-HKINFIESEALSV 53 (125)
Q Consensus 4 ~~~~vLeiG~g~G--~~t~~la~~~~~~~~v~~iD-------------~~~~-~~i~~~~gd~~~~ 53 (125)
.-+..||||||.- -++=.+|++.-++++|+-+| .+-. .+..++++|..+.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 4568999999854 35556777776689999999 2221 2488999999874
No 294
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=70.53 E-value=9.1 Score=29.78 Aligned_cols=86 Identities=21% Similarity=0.137 Sum_probs=47.7
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--CC------CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID--AR------VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKD 77 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--~~------~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~ 77 (125)
.-++|+|||.|-.+. ..+...+++.| .+ -.....+..+|+..... .+.+||+++.-+..+
T Consensus 47 sv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~-------~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPF-------REESFDAALSIAVIH 114 (293)
T ss_pred ceeeecccCCcccCc-----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCC-------CCCccccchhhhhhh
Confidence 457999999986542 21356788888 11 11122566778876632 267899988533322
Q ss_pred CCHHHHhhhCCCCCCcchHHHHHHHHHHhhcCCCeE
Q 042171 78 NYCNYMREQVPDHFRGSSKQAILDLNRSLVDDPCVQ 113 (125)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (125)
+... +.....++++..+.++.-.+..
T Consensus 115 hlsT----------~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 115 HLST----------RERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhh----------HHHHHHHHHHHHHHhcCCCceE
Confidence 2111 1124455566666555444433
No 295
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=70.48 E-value=2.3 Score=31.73 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=34.7
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEEEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID-ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v~i 72 (125)
-++|||||-+.+..+.... --.|+.|| ..-. -.+.+.|..+. +|.. +.+.||+|.+
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~--~~I~qqDFm~rplp~~-----~~e~FdvIs~ 110 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH--PGILQQDFMERPLPKN-----ESEKFDVISL 110 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC--CCceeeccccCCCCCC-----cccceeEEEE
Confidence 5899999987776654322 23499999 2221 22455566554 2321 3578999986
No 296
>PRK06179 short chain dehydrogenase; Provisional
Probab=70.23 E-value=40 Score=24.64 Aligned_cols=72 Identities=10% Similarity=0.024 Sum_probs=43.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeC-----CCCCcEEEEecchHHH--HHHHhhc-CCCCCceeEEEEcC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDA-----RVDHKINFIESEALSV--LDQLLKD-SENEVNFDYAFMDA 74 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~-----~~~~~i~~~~gd~~~~--l~~~~~~-~~~~~~fD~v~id~ 74 (125)
+.+.||-.|+ +|..+..+++.+ ..+.+|++++. ....+++++++|..+. +..+... ....+++|.++..+
T Consensus 3 ~~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~a 81 (270)
T PRK06179 3 NSKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNA 81 (270)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 4467888885 566777777765 33568888881 1124577788876542 1111110 00135789999877
Q ss_pred CC
Q 042171 75 DK 76 (125)
Q Consensus 75 ~~ 76 (125)
..
T Consensus 82 g~ 83 (270)
T PRK06179 82 GV 83 (270)
T ss_pred CC
Confidence 64
No 297
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=69.95 E-value=3.1 Score=32.69 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=15.5
Q ss_pred CCCEEEEEcCcccHHHHHHHh
Q 042171 4 KLKKTIEIGVFTGYSLFLTAL 24 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~ 24 (125)
++-+|+|+||.+|..|+.+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHH
Confidence 345899999999999997655
No 298
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=69.62 E-value=35 Score=26.36 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEeC---C----C-----------CCcEEEEecchHHH--HHHHhhcCC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPE-DGQITAIDA---R----V-----------DHKINFIESEALSV--LDQLLKDSE 62 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD~---~----~-----------~~~i~~~~gd~~~~--l~~~~~~~~ 62 (125)
+.++||-.| |+|+.+.++++.+-+ +-+|+++|. + + ..+++++.+|..+. +..+.
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~---- 88 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC---- 88 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh----
Confidence 557888877 479999999988743 458999981 1 0 13588899998753 23321
Q ss_pred CCCceeEEEEcCCC
Q 042171 63 NEVNFDYAFMDADK 76 (125)
Q Consensus 63 ~~~~fD~v~id~~~ 76 (125)
..+|.|+-=++.
T Consensus 89 --~~~d~ViHlAa~ 100 (348)
T PRK15181 89 --KNVDYVLHQAAL 100 (348)
T ss_pred --hCCCEEEECccc
Confidence 348988865553
No 299
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=69.08 E-value=20 Score=28.17 Aligned_cols=69 Identities=17% Similarity=0.039 Sum_probs=42.9
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEeC---C-CC---CcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPE-DGQITAIDA---R-VD---HKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD~---~-~~---~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
|+.+.++||-.| |+|+.+.++++.+.. +-+|++++. . +. ..++++.+|..+.-. +..- ...+|.||-
T Consensus 17 ~~~~~~~IlVtG-gtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~---~~~~D~Vih 91 (370)
T PLN02695 17 WPSEKLRICITG-AGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMEN-CLKV---TKGVDHVFN 91 (370)
T ss_pred CCCCCCEEEEEC-CccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHH-HHHH---HhCCCEEEE
Confidence 345667888765 589999999998853 458999981 1 11 125778888765321 1100 134788875
Q ss_pred cC
Q 042171 73 DA 74 (125)
Q Consensus 73 d~ 74 (125)
=+
T Consensus 92 ~A 93 (370)
T PLN02695 92 LA 93 (370)
T ss_pred cc
Confidence 44
No 300
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=68.64 E-value=14 Score=29.45 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=41.3
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe----------------CCCCCcEEEEecchHHH--HHHHhhcCCCCC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIP-EDGQITAID----------------ARVDHKINFIESEALSV--LDQLLKDSENEV 65 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD----------------~~~~~~i~~~~gd~~~~--l~~~~~~~~~~~ 65 (125)
+.+||-.| |.||.+-.-+.++. .+-.|+.+| .+-..+|.|+++|..+. |..+- +..
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF----~~~ 76 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLF----SEV 76 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHH----hhc
Confidence 56788877 45776655555443 356899999 22236899999999874 33321 145
Q ss_pred ceeEEEE
Q 042171 66 NFDYAFM 72 (125)
Q Consensus 66 ~fD~v~i 72 (125)
.||.|+-
T Consensus 77 ~fd~V~H 83 (343)
T KOG1371|consen 77 KFDAVMH 83 (343)
T ss_pred CCceEEe
Confidence 6998875
No 301
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.89 E-value=3.2 Score=33.59 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=46.7
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
+.+|+|++|.+|..|..+|..+++.|++++.| +|. ..++...+|.... +... +-...-.
T Consensus 214 g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t-~~~~----~~~~v~~ 287 (413)
T KOG2360|consen 214 GSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNT-ATPE----KFRDVTY 287 (413)
T ss_pred CCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCC-CCcc----cccceeE
Confidence 46899999999999999999888789999999 444 4566667777664 2211 1134566
Q ss_pred EEEcC
Q 042171 70 AFMDA 74 (125)
Q Consensus 70 v~id~ 74 (125)
+++|.
T Consensus 288 iL~Dp 292 (413)
T KOG2360|consen 288 ILVDP 292 (413)
T ss_pred EEeCC
Confidence 77764
No 302
>PLN00016 RNA-binding protein; Provisional
Probab=67.32 E-value=21 Score=27.99 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=43.7
Q ss_pred CCCEEEEE---cCcccHHHHHHHhhCCC-CCEEEEEe---CC--------------C-CCcEEEEecchHHHHHHHhhcC
Q 042171 4 KLKKTIEI---GVFTGYSLFLTALTIPE-DGQITAID---AR--------------V-DHKINFIESEALSVLDQLLKDS 61 (125)
Q Consensus 4 ~~~~vLei---G~g~G~~t~~la~~~~~-~~~v~~iD---~~--------------~-~~~i~~~~gd~~~~l~~~~~~~ 61 (125)
..++||-+ |.|+|+.+..+++.+-+ +-+|++++ .. + ...++++.+|..+....+ .
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~-~-- 127 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV-A-- 127 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh-c--
Confidence 34679988 23789999998887743 45788888 11 0 124889999998742222 1
Q ss_pred CCCCceeEEEEcC
Q 042171 62 ENEVNFDYAFMDA 74 (125)
Q Consensus 62 ~~~~~fD~v~id~ 74 (125)
...+|.|+...
T Consensus 128 --~~~~d~Vi~~~ 138 (378)
T PLN00016 128 --GAGFDVVYDNN 138 (378)
T ss_pred --cCCccEEEeCC
Confidence 34699888643
No 303
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.11 E-value=25 Score=27.24 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=19.1
Q ss_pred EEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 7 KTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+||-|||| .|...+...-..+ =++++-+|
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD 30 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVID 30 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 57889986 4555554443344 47899999
No 304
>PRK06172 short chain dehydrogenase; Provisional
Probab=66.38 E-value=46 Score=23.96 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=42.8
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe-------------CCCCCcEEEEecchHHH------HHHHhhcC
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID-------------ARVDHKINFIESEALSV------LDQLLKDS 61 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~------l~~~~~~~ 61 (125)
..+.+++|-.|+ +|..+..+++.+ ..+.+|+.++ .....++.++..|..+. +.....+
T Consensus 4 ~l~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~- 81 (253)
T PRK06172 4 TFSGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAA- 81 (253)
T ss_pred CCCCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-
Confidence 345678898886 455555566554 3356898888 11234678888877542 1222111
Q ss_pred CCCCceeEEEEcCCC
Q 042171 62 ENEVNFDYAFMDADK 76 (125)
Q Consensus 62 ~~~~~fD~v~id~~~ 76 (125)
.+++|.++..+..
T Consensus 82 --~g~id~li~~ag~ 94 (253)
T PRK06172 82 --YGRLDYAFNNAGI 94 (253)
T ss_pred --hCCCCEEEECCCC
Confidence 2578999987653
No 305
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=66.13 E-value=32 Score=26.94 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=25.7
Q ss_pred CEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 6 KKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
.+|+-+|+|+ |..++.+++..+ ..+|+.+|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d 200 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLG-ASVVIVVD 200 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CceEEEeC
Confidence 3799999986 888888888887 68999999
No 306
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=65.19 E-value=10 Score=29.53 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=36.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
..-|-|+|||-+-.+. ...-+|++.| ....++|+ ..|..+. |. ++++.|+++.
T Consensus 181 ~~vIaD~GCGEakiA~------~~~~kV~SfDL~a~~~~V~--~cDm~~v-Pl------~d~svDvaV~ 234 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS------SERHKVHSFDLVAVNERVI--ACDMRNV-PL------EDESVDVAVF 234 (325)
T ss_pred ceEEEecccchhhhhh------ccccceeeeeeecCCCcee--eccccCC-cC------ccCcccEEEe
Confidence 3467899999887654 2346799999 55555554 4677663 53 3789999885
No 307
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=64.61 E-value=4 Score=30.73 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+.+.++||+|.|-|-.|..|+..+. +|++.|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe---evyATE 141 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE---EVYATE 141 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH---HHHHHH
Confidence 3578999999999999998876553 255555
No 308
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=64.55 E-value=39 Score=26.86 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=23.8
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
++.+|+-+|+| .|..++..+++++ .+|+.+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d 197 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILD 197 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEE
Confidence 56789999997 5666677777664 5799998
No 309
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=64.09 E-value=42 Score=25.16 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=42.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe---C------------CCCCcEEEEecchHHH--HHHHhhcCCCCCc
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPE-DGQITAID---A------------RVDHKINFIESEALSV--LDQLLKDSENEVN 66 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD---~------------~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~ 66 (125)
.++||-.|+ +|+.+..+++.+-. +.+|+++. . +..++++++++|..+. +..+ -..
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~~ 76 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VDG 76 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------HcC
Confidence 467887775 79999999888743 45787766 1 1124688999988753 2222 135
Q ss_pred eeEEEEcCC
Q 042171 67 FDYAFMDAD 75 (125)
Q Consensus 67 fD~v~id~~ 75 (125)
+|.||.-++
T Consensus 77 ~d~Vih~A~ 85 (322)
T PLN02662 77 CEGVFHTAS 85 (322)
T ss_pred CCEEEEeCC
Confidence 899887665
No 310
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=63.22 E-value=69 Score=24.86 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe----------------CCCCCcEEEEecchHHHHHHHhhcCCCCC
Q 042171 3 LKLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID----------------ARVDHKINFIESEALSVLDQLLKDSENEV 65 (125)
Q Consensus 3 ~~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD----------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~ 65 (125)
.++.+|.-||+|. |+.....+...+--.+++-+| ..+..++++..++.. .+ .
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~----~~-------~ 72 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS----DC-------K 72 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH----Hh-------C
Confidence 4577999999976 555555443333223788888 112234555544432 23 4
Q ss_pred ceeEEEEcCCC
Q 042171 66 NFDYAFMDADK 76 (125)
Q Consensus 66 ~fD~v~id~~~ 76 (125)
..|+|++-+..
T Consensus 73 ~adivIitag~ 83 (315)
T PRK00066 73 DADLVVITAGA 83 (315)
T ss_pred CCCEEEEecCC
Confidence 58999987664
No 311
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=61.90 E-value=69 Score=25.17 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhhcCCCeEEEEeecCCcc
Q 042171 95 SKQAILDLNRSLVDDPCVQLSHVALGESV 123 (125)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~lp~~~G~ 123 (125)
....+-...+.|-.||++.+.++-+-.|+
T Consensus 320 ~EdqV~~Af~ilTaDPkVk~iLvNiFGGI 348 (412)
T KOG1447|consen 320 KEDQVYQAFKILTADPKVKAILVNIFGGI 348 (412)
T ss_pred cHHHHHHHhhhhccCCceeEEEEehhcce
Confidence 34445666778899999999999887776
No 312
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=61.76 E-value=52 Score=24.08 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=21.4
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-+||| .|...+......+ -++++-+|
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD 52 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVD 52 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 45789999997 3444444333444 47899998
No 313
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=61.71 E-value=13 Score=29.45 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=24.1
Q ss_pred CCCCCEEEEEcCcccHHHH-HHHhhCCCCCEEEEE
Q 042171 2 RLKLKKTIEIGVFTGYSLF-LTALTIPEDGQITAI 35 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~-~la~~~~~~~~v~~i 35 (125)
...|++||-||+.+||-.. .++.+++.++.-+++
T Consensus 38 ~ngPKkVLviGaSsGyGLa~RIsaaFG~gAdTiGV 72 (398)
T COG3007 38 KNGPKKVLVIGASSGYGLAARISAAFGPGADTIGV 72 (398)
T ss_pred cCCCceEEEEecCCcccHHHHHHHHhCCCCceeeE
Confidence 4579999999999998543 467777655544443
No 314
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=61.41 E-value=5.4 Score=33.04 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=43.3
Q ss_pred CEEEEEcCcccHHHHHHHhhCCC---CCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPE---DGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~---~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
.+|.|-.||+|...+..++.+.. ...+++.| .++...+....+|...... ... ......|
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~-~~~-~~~~~~~ 265 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK-HDD-KDDKGKF 265 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc-ccc-cCCccce
Confidence 48999999999999998888853 36689999 3443245666676665421 100 0013679
Q ss_pred eEEEE
Q 042171 68 DYAFM 72 (125)
Q Consensus 68 D~v~i 72 (125)
|+|+.
T Consensus 266 D~via 270 (489)
T COG0286 266 DFVIA 270 (489)
T ss_pred eEEEe
Confidence 99985
No 315
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=61.05 E-value=28 Score=23.12 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=20.2
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+|+=+|+| .|...+......+ -++++-+|
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD 33 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVD 33 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecC
Confidence 4689999996 4554444333334 48999999
No 316
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=59.92 E-value=22 Score=28.06 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=46.3
Q ss_pred EEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---CC----CCCc-EEEEecchHH--HHHHHhhcCCCCCceeEEEEcCC
Q 042171 7 KTIEIGVFTGYSLFLTALTIP-EDGQITAID---AR----VDHK-INFIESEALS--VLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---~~----~~~~-i~~~~gd~~~--~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
+||-.| |.||.+-..+..+- .+-+|+.+| .+ +... +.|++||..+ .|...-. +.++|.|+-=++
T Consensus 2 ~iLVtG-GAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~----~~~idaViHFAa 76 (329)
T COG1087 2 KVLVTG-GAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFE----ENKIDAVVHFAA 76 (329)
T ss_pred eEEEec-CcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHH----hcCCCEEEECcc
Confidence 455544 78888888777664 356899999 22 2222 6899999998 3444321 467998885333
Q ss_pred C-------cCCHHHHh
Q 042171 76 K-------DNYCNYMR 84 (125)
Q Consensus 76 ~-------~~~~~~~~ 84 (125)
. .+...||+
T Consensus 77 ~~~VgESv~~Pl~Yy~ 92 (329)
T COG1087 77 SISVGESVQNPLKYYD 92 (329)
T ss_pred ccccchhhhCHHHHHh
Confidence 2 23456776
No 317
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=59.30 E-value=14 Score=28.24 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC-----------CCEEEEEe------------------------------------
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPE-----------DGQITAID------------------------------------ 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~-----------~~~v~~iD------------------------------------ 36 (125)
+.-.|+|+|=|+|...+..-++.+. .-++++++
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 4557899999999998887776542 12467777
Q ss_pred --CCC--CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCc-CCHHHHh
Q 042171 37 --ARV--DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKD-NYCNYMR 84 (125)
Q Consensus 37 --~~~--~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~-~~~~~~~ 84 (125)
..+ .....++.||+.+.+|..... .+.+|..|.|+-.+ .+|+-|+
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~---~~~~dAwflDgFsP~kNP~mW~ 187 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRR---RPGTDAWFLDGFRPVKNPEMWE 187 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCccccc---ccCccEEecCCccccCChhhcc
Confidence 001 235678899999888765211 12799999998643 4555555
No 318
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=59.27 E-value=47 Score=27.76 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=36.4
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
++|.+|||- |-+..-+.-.----|+.+| +.-....++.+.|.... .+ ++++||.|+.
T Consensus 51 ~~l~lGCGN--S~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l--~f-----edESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGN--SELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL--VF-----EDESFDIVID 120 (482)
T ss_pred eeEeecCCC--CHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhc--cC-----CCcceeEEEe
Confidence 689999955 4444443321123589999 11224578888888765 23 3688999985
No 319
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=59.26 E-value=43 Score=25.72 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---C---------CCCCcEEEEecchHHH--HHHHhhcCCCCCceeE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIP-EDGQITAID---A---------RVDHKINFIESEALSV--LDQLLKDSENEVNFDY 69 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---~---------~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~ 69 (125)
.++||-.| |+|+.+.++++.+- .+.+|++++ . +...+++++.+|..+. +..+.+ ...+|.
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIA----EFKPEI 78 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHh----hcCCCE
Confidence 46788877 57888888888763 356899888 1 1123577788877643 222221 235798
Q ss_pred EEEcCC
Q 042171 70 AFMDAD 75 (125)
Q Consensus 70 v~id~~ 75 (125)
|+--++
T Consensus 79 vih~A~ 84 (349)
T TIGR02622 79 VFHLAA 84 (349)
T ss_pred EEECCc
Confidence 886655
No 320
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=59.09 E-value=20 Score=28.13 Aligned_cols=32 Identities=19% Similarity=0.069 Sum_probs=26.2
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||.+|+|. |..++.+|++.+ -.++++++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~ 216 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG-AERVIAID 216 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 346899999988 999999999985 34688887
No 321
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=58.90 E-value=16 Score=27.89 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=31.7
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------------CCCCCcEEEEecchHH
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID-------------ARVDHKINFIESEALS 52 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------------~~~~~~i~~~~gd~~~ 52 (125)
.-|.|||-|.|-.|..+..+-- .++..+| .....+..++++|++-
T Consensus 52 ~~v~eIgPgpggitR~il~a~~--~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADV--ARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred ceeEEecCCCCchhHHHHhcch--hheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 4689999999999999987632 4555555 1123477888888763
No 322
>PLN02650 dihydroflavonol-4-reductase
Probab=58.72 E-value=50 Score=25.35 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe---C------------CCCCcEEEEecchHHH--HHHHhhcCC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID---A------------RVDHKINFIESEALSV--LDQLLKDSE 62 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD---~------------~~~~~i~~~~gd~~~~--l~~~~~~~~ 62 (125)
|..+.++||-.| |+|+.+..+++.+-. +.+|+++. . +...+++++.+|..+. +..+.
T Consensus 1 ~~~~~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~---- 75 (351)
T PLN02650 1 MGSQKETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAI---- 75 (351)
T ss_pred CCCCCCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHH----
Confidence 566777888776 478999998888743 45787776 1 1112578889887653 23321
Q ss_pred CCCceeEEEEcCC
Q 042171 63 NEVNFDYAFMDAD 75 (125)
Q Consensus 63 ~~~~fD~v~id~~ 75 (125)
..+|.|+--++
T Consensus 76 --~~~d~ViH~A~ 86 (351)
T PLN02650 76 --RGCTGVFHVAT 86 (351)
T ss_pred --hCCCEEEEeCC
Confidence 34788876544
No 323
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=58.36 E-value=65 Score=23.98 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=21.7
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||-+||| .|..++...-+.+ -++++-+|
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD 42 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLID 42 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 45789999996 5555554333344 47999999
No 324
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=57.19 E-value=57 Score=24.36 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=18.2
Q ss_pred EEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 7 KTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+||-+|+| .|...+......+ =++++-+|
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD 30 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVID 30 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 47888885 4444444333333 47899999
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=57.10 E-value=52 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||..|+| .|..++.+|+..+ .+|++++
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~ 196 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMG--AAVIAVD 196 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CEEEEEc
Confidence 4578888876 4788888888874 6788887
No 326
>PRK09620 hypothetical protein; Provisional
Probab=56.65 E-value=59 Score=24.14 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=39.0
Q ss_pred ccHHHHHHHhhCC-CCCEEEEEe---CCCCC----c--EEEEec--chHHHHHHHhhcCCCCCceeEEEEcCCCcCCHH
Q 042171 15 TGYSLFLTALTIP-EDGQITAID---ARVDH----K--INFIES--EALSVLDQLLKDSENEVNFDYAFMDADKDNYCN 81 (125)
Q Consensus 15 ~G~~t~~la~~~~-~~~~v~~iD---~~~~~----~--i~~~~g--d~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~ 81 (125)
+|+.+.++|+++- .+.+|+.++ .+... . +..+++ |..+.+.... ....+|.||.-|+...|.+
T Consensus 28 SGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~~~----~~~~~D~VIH~AAvsD~~~ 102 (229)
T PRK09620 28 KGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMKSII----THEKVDAVIMAAAGSDWVV 102 (229)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHHHHh----cccCCCEEEECccccceec
Confidence 5999999999874 367899898 22211 2 233455 3333333322 1246899999888777754
No 327
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=55.95 E-value=16 Score=29.13 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=40.5
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe-------CC-CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID-------AR-VDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD-------~~-~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
....+|+|.|.|..+-.+....| .-+.+=.| +. +.+.|+.+.||..+..| +-|+||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P----------~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP----------KGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhcCCcceecccccccCC----------CcCeEEE
Confidence 45679999999999999999776 44444444 22 21458899999886644 2458887
No 328
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=55.85 E-value=23 Score=24.23 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID---ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
+..+|+|||.|.=.-.....+.. +..|+++| ......+.++..|..+- .+.- =...|+|++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~~a~~g~~~v~DDif~P--~l~i----Y~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPRKAPEGVNFVVDDIFNP--NLEI----YEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S----STTEE---SSS----HHH----HTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECcccccccCcceeeecccCC--CHHH----hcCCcEEEE
Confidence 45699999998765554433332 47899999 22224577888887752 2211 145788874
No 329
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=55.63 E-value=45 Score=25.54 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=21.4
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
.++||-+|+| .|..++.+|++.+ ..+|+++|
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~ 201 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCAD 201 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEe
Confidence 4678888764 4566677788764 23688887
No 330
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=55.46 E-value=23 Score=27.57 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=26.5
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|+++...|+-||.|..-+++.++.+-. +.+|+-+|
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE 37 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARA-GASVALVA 37 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEe
Confidence 566667899999988777766655443 67899999
No 331
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.15 E-value=43 Score=27.07 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=52.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
+.+|+|.=+|||.=++.+|...+. -+++.-| .+.......+..|+...+-+. ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~------~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL------HRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc------CCCccEE
Confidence 789999999999999999999873 3899988 222345666668998776543 4678888
Q ss_pred EEcCCCcCCHHHHh
Q 042171 71 FMDADKDNYCNYMR 84 (125)
Q Consensus 71 ~id~~~~~~~~~~~ 84 (125)
=+|--- ...+|++
T Consensus 126 DiDPFG-SPaPFlD 138 (380)
T COG1867 126 DIDPFG-SPAPFLD 138 (380)
T ss_pred ecCCCC-CCchHHH
Confidence 776433 3345555
No 332
>PLN02240 UDP-glucose 4-epimerase
Probab=55.07 E-value=23 Score=27.05 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeC-----------------CCCCcEEEEecchHHH--HHHHhhc
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDA-----------------RVDHKINFIESEALSV--LDQLLKD 60 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~-----------------~~~~~i~~~~gd~~~~--l~~~~~~ 60 (125)
|++..++||-.| |+|..+..+++.+- .+.+|++++. ....+++++.+|..+. +..+..
T Consensus 1 ~~~~~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~- 78 (352)
T PLN02240 1 MSLMGRTILVTG-GAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFA- 78 (352)
T ss_pred CCCCCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHH-
Confidence 677788999888 67888888887763 3468988861 0123578888888653 222211
Q ss_pred CCCCCceeEEEEcCC
Q 042171 61 SENEVNFDYAFMDAD 75 (125)
Q Consensus 61 ~~~~~~fD~v~id~~ 75 (125)
...+|.|+.-++
T Consensus 79 ---~~~~d~vih~a~ 90 (352)
T PLN02240 79 ---STRFDAVIHFAG 90 (352)
T ss_pred ---hCCCCEEEEccc
Confidence 235898887554
No 333
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=55.03 E-value=52 Score=25.21 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=39.0
Q ss_pred EEEEEcCcccHHHHHHHhhCCC--CCEEEEEeC------CC--CCcEEEEecchH-H--HHHHHhhcCCCCCceeEEEE
Q 042171 7 KTIEIGVFTGYSLFLTALTIPE--DGQITAIDA------RV--DHKINFIESEAL-S--VLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~--~~~v~~iD~------~~--~~~i~~~~gd~~-~--~l~~~~~~~~~~~~fD~v~i 72 (125)
+||-.| ++|+.+.++++.+-. +-+|++++. .+ ...++++.+|.. + .+..+ -...|.||-
T Consensus 3 ~ilVtG-atGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------~~~~d~ViH 74 (347)
T PRK11908 3 KVLILG-VNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH------VKKCDVILP 74 (347)
T ss_pred EEEEEC-CCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH------HcCCCEEEE
Confidence 577655 479999999998742 358999981 11 135889999985 2 23222 135898884
No 334
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=54.78 E-value=13 Score=29.90 Aligned_cols=33 Identities=24% Similarity=0.068 Sum_probs=27.0
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-------CCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIP-------EDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~-------~~~~v~~iD 36 (125)
.+..++|||.|+|..+.-|++.+. +..++.-||
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE 116 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIE 116 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEe
Confidence 356899999999999999888662 257889999
No 335
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=54.44 E-value=26 Score=24.27 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=22.9
Q ss_pred EEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 31 QITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 31 ~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
+|+++| .++.++++++...=... ....+ .+++|+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~----~~~v~~~iFN 53 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL-DEYIP----EGPVDAAIFN 53 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT------S--EEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCc----cCCcCEEEEE
Confidence 588888 56777999998655444 33321 2489999874
No 336
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=54.34 E-value=11 Score=32.00 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=45.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhC---CCCCEEEEEe--------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 5 LKKTIEIGVFTGYSLFLTALTI---PEDGQITAID--------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~---~~~~~v~~iD--------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
...|+-+|.|-|-..-+..++. ...-++++|| .....+|+++.+|..++-+. .++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap-------~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP-------REQA 440 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc-------hhhc
Confidence 4567889999998876655543 3356899999 33567899999999877321 2678
Q ss_pred eEEEE
Q 042171 68 DYAFM 72 (125)
Q Consensus 68 D~v~i 72 (125)
|++++
T Consensus 441 DI~VS 445 (649)
T KOG0822|consen 441 DIIVS 445 (649)
T ss_pred cchHH
Confidence 88875
No 337
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=54.18 E-value=7.6 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=23.0
Q ss_pred CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcC
Q 042171 41 HKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDN 78 (125)
Q Consensus 41 ~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~ 78 (125)
.+|+++++|+.+. |. ++++||+|++....++
T Consensus 26 ~~i~~~~~d~~~l-p~------~~~~fD~v~~~~~l~~ 56 (160)
T PLN02232 26 KCIEWIEGDAIDL-PF------DDCEFDAVTMGYGLRN 56 (160)
T ss_pred CceEEEEechhhC-CC------CCCCeeEEEecchhhc
Confidence 5799999999865 42 2578999998655443
No 338
>PRK08163 salicylate hydroxylase; Provisional
Probab=53.57 E-value=26 Score=27.34 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=26.3
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|+ .+.+|+-||.|.+-.++.++.+-. +-+|+-+|
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~E 34 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLE 34 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEe
Confidence 44 567999999988877777666543 67899999
No 339
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.24 E-value=20 Score=29.06 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=25.2
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEE---Ee
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITA---ID 36 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~---iD 36 (125)
..++|.|+|-|..+-|++..++ ...++- +|
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l~vlvd 216 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQ-IQNVYLFVLVD 216 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhc-cccEEEEEeec
Confidence 5789999999999999999998 455444 77
No 340
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.08 E-value=82 Score=25.34 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=39.6
Q ss_pred CEEEEEcC-cccHHHHHHHhhCCCCCEEEEEeCC--------CCCcEEEEecc-hHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171 6 KKTIEIGV-FTGYSLFLTALTIPEDGQITAIDAR--------VDHKINFIESE-ALSVLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 6 ~~vLeiG~-g~G~~t~~la~~~~~~~~v~~iD~~--------~~~~i~~~~gd-~~~~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
++|+=||. |+|.+++.+......+.+|++.|.. +...+++..+. ..+. + ..+|+|+....
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~---~-------~~~d~vV~Spg 77 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEW---L-------LEADLVVTNPG 77 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHH---h-------ccCCEEEECCC
Confidence 56777773 6888888887766423689999921 21234554442 2111 2 34899998776
Q ss_pred Cc-CCHHH
Q 042171 76 KD-NYCNY 82 (125)
Q Consensus 76 ~~-~~~~~ 82 (125)
.+ ..+.+
T Consensus 78 I~~~~p~~ 85 (438)
T PRK04663 78 IALATPEI 85 (438)
T ss_pred CCCCCHHH
Confidence 54 34433
No 341
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.58 E-value=45 Score=26.70 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=43.2
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeCCC-----------C-CcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDARV-----------D-HKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~~~-----------~-~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
|..+.++|+-+|.|. .+..+|+.+- .+.+|+.+|... . ..++++.++..+. . .+.+
T Consensus 1 ~~~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~------~~~~ 69 (450)
T PRK14106 1 MELKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE---F------LEGV 69 (450)
T ss_pred CCcCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh---H------hhcC
Confidence 445678899999866 6667777653 367899999211 0 1345555555442 1 2569
Q ss_pred eEEEEcCCC-cCCHH
Q 042171 68 DYAFMDADK-DNYCN 81 (125)
Q Consensus 68 D~v~id~~~-~~~~~ 81 (125)
|+|+..... ..++.
T Consensus 70 d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 70 DLVVVSPGVPLDSPP 84 (450)
T ss_pred CEEEECCCCCCCCHH
Confidence 999987664 34443
No 342
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=52.39 E-value=78 Score=23.88 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=22.1
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||..|+| .|..++.+|++.+ ..++++++
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~ 199 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLG-AARIIAVD 199 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEe
Confidence 4577777765 4778888888874 24788877
No 343
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=52.25 E-value=61 Score=21.12 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=36.2
Q ss_pred EEEEEcCcccHHHHHHHhhCCCC-CEEEEEe--CC---CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 7 KTIEIGVFTGYSLFLTALTIPED-GQITAID--AR---VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~-~~v~~iD--~~---~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
+||-||.|----++..+..-.+. .+|++.- .| +..++.+-..|..... .+.. ++.+|+|++.
T Consensus 2 kVLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~-~~a~----~~~idlvvvG 69 (100)
T PF02844_consen 2 KVLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELA-DFAK----ENKIDLVVVG 69 (100)
T ss_dssp EEEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHH-HHHH----HTTESEEEES
T ss_pred EEEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHH-HHHH----HcCCCEEEEC
Confidence 79999998777776665543322 4677766 22 3334444344444443 3443 4789999984
No 344
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=51.77 E-value=5.2 Score=32.00 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=42.0
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEE
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v 70 (125)
..++++|||.|.....++.-- ..++++++ +.+.++..++.++..+... .++.||++
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-------edn~fd~v 182 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-------EDNTFDGV 182 (364)
T ss_pred ccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-------CccccCcE
Confidence 368999999999999998753 57788888 3455555566666665421 26789998
Q ss_pred EE
Q 042171 71 FM 72 (125)
Q Consensus 71 ~i 72 (125)
..
T Consensus 183 ~~ 184 (364)
T KOG1269|consen 183 RF 184 (364)
T ss_pred EE
Confidence 74
No 345
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=51.10 E-value=78 Score=23.90 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=23.2
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||-.|+|. |..++.+|++. +.+++++.
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~ 190 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVD 190 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEC
Confidence 345888888764 77888888886 47787775
No 346
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=50.70 E-value=86 Score=22.77 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe-----------CCCCCcEEEEecchHHH------HHHHhhcCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID-----------ARVDHKINFIESEALSV------LDQLLKDSENE 64 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~------l~~~~~~~~~~ 64 (125)
.+.+.+|-.|++.| .+..+++++ ..+.+|+.++ .....++.++..|..+. +...... .
T Consensus 6 l~~k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~---~ 81 (251)
T PRK12481 6 LNGKVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV---M 81 (251)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH---c
Confidence 45678898886554 455555554 4467888776 11234577777776542 2222111 2
Q ss_pred CceeEEEEcCCC
Q 042171 65 VNFDYAFMDADK 76 (125)
Q Consensus 65 ~~fD~v~id~~~ 76 (125)
+++|.++..+..
T Consensus 82 g~iD~lv~~ag~ 93 (251)
T PRK12481 82 GHIDILINNAGI 93 (251)
T ss_pred CCCCEEEECCCc
Confidence 579999987653
No 347
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=50.20 E-value=91 Score=24.02 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=20.8
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||-.|+| .|..++.+|++.+ -.+|++++
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~ 208 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVD 208 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEc
Confidence 4688888864 3555667777764 23588887
No 348
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=50.02 E-value=44 Score=23.62 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=44.2
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeC-------------CCCCcEEEEecchHHH--HHHHhhcC-CC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDA-------------RVDHKINFIESEALSV--LDQLLKDS-EN 63 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~-------------~~~~~i~~~~gd~~~~--l~~~~~~~-~~ 63 (125)
|.+..++||-.|+ +|..+..+++.+- .+.+|+.+.. ....++.++..|..+. +....... ..
T Consensus 1 ~~~~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 1 MSLQGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5566678998886 6888888877653 3457888871 1223577777777532 11111000 00
Q ss_pred CCceeEEEEcCCC
Q 042171 64 EVNFDYAFMDADK 76 (125)
Q Consensus 64 ~~~fD~v~id~~~ 76 (125)
-.+.|.|+..+..
T Consensus 80 ~~~id~vi~~ag~ 92 (246)
T PRK05653 80 FGALDILVNNAGI 92 (246)
T ss_pred hCCCCEEEECCCc
Confidence 2467988876643
No 349
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=49.99 E-value=84 Score=25.35 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=33.8
Q ss_pred CcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHhhhC---------CCCCCcchHHHHHHHHHHhhc
Q 042171 41 HKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMREQV---------PDHFRGSSKQAILDLNRSLVD 108 (125)
Q Consensus 41 ~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~ 108 (125)
....+-.+.....+..+ ...||+|++|-. ..+.+|....+ .+..- ..-+..++|.+.+++
T Consensus 198 ~~~d~~~~~~~~Ll~~~------~~~~~~vV~Dlp-~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~ 266 (366)
T COG4963 198 KNYDLKTGAVERLLDLL------RGSFDFVVVDLP-NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKR 266 (366)
T ss_pred hhcccccchHHHHHHHh------hccCCeEEEcCC-CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHH
Confidence 34455555555555544 478999999988 34445555322 11111 245556677766654
No 350
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.60 E-value=84 Score=25.16 Aligned_cols=31 Identities=32% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCCEEEEEcC-cccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGV-FTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~-g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..++|+=+|. ++|.+++.+++.. +.+|++.|
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D 36 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLAR--GVTPRVID 36 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC--CCeEEEEc
Confidence 4567777773 4777777765554 46899999
No 351
>PRK05442 malate dehydrogenase; Provisional
Probab=49.00 E-value=1.3e+02 Score=23.61 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=21.3
Q ss_pred CCCCCEEEEEcC-cc-cHHHHHHHhhCCCCC-----EEEEEe
Q 042171 2 RLKLKKTIEIGV-FT-GYSLFLTALTIPEDG-----QITAID 36 (125)
Q Consensus 2 ~~~~~~vLeiG~-g~-G~~t~~la~~~~~~~-----~v~~iD 36 (125)
+.+|.+|.-||+ |. |++.++.+-...--+ +++-+|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiD 42 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLE 42 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEe
Confidence 467899999997 66 666544322111012 677787
No 352
>PTZ00357 methyltransferase; Provisional
Probab=48.80 E-value=43 Score=29.82 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=42.9
Q ss_pred EEEEEcCcccHHHHHHHhhC---CCCCEEEEEe----------------CCC-------CCcEEEEecchHHHHHHHh-h
Q 042171 7 KTIEIGVFTGYSLFLTALTI---PEDGQITAID----------------ARV-------DHKINFIESEALSVLDQLL-K 59 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~---~~~~~v~~iD----------------~~~-------~~~i~~~~gd~~~~l~~~~-~ 59 (125)
.|+-+|+|-|-.--...++. +-.-+|++|| ..+ +++|+++.+|..++-+... .
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999998766555543 3356899999 012 3469999999998732110 0
Q ss_pred c---CCCCCceeEEEE
Q 042171 60 D---SENEVNFDYAFM 72 (125)
Q Consensus 60 ~---~~~~~~fD~v~i 72 (125)
+ +..-+++|+|++
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 0 001137999996
No 353
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.66 E-value=1.1e+02 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=21.7
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
.++||-.|+| .|..++.+|++.+ -.++++++
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~ 198 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVG 198 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4678877765 5667777888775 34688887
No 354
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=48.54 E-value=69 Score=23.54 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=42.1
Q ss_pred EEEEEcCcccHHHHHHHhhCCCC-CEEEEEe------CC-CC--CcEEEEecchHHH--HHHHhhcCCCCCceeEEEEcC
Q 042171 7 KTIEIGVFTGYSLFLTALTIPED-GQITAID------AR-VD--HKINFIESEALSV--LDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~-~~v~~iD------~~-~~--~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~v~id~ 74 (125)
+++=+|+ |-.+..+|+.+.+. -.|+.|| .. .. .-...+++|+.+. |... .-..+|.++...
T Consensus 2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a-----gi~~aD~vva~t 74 (225)
T COG0569 2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA-----GIDDADAVVAAT 74 (225)
T ss_pred EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc-----CCCcCCEEEEee
Confidence 5677777 67777788877645 4799999 11 22 3467788888763 4333 146799999866
Q ss_pred CC
Q 042171 75 DK 76 (125)
Q Consensus 75 ~~ 76 (125)
..
T Consensus 75 ~~ 76 (225)
T COG0569 75 GN 76 (225)
T ss_pred CC
Confidence 55
No 355
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=48.09 E-value=80 Score=20.94 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=37.5
Q ss_pred CCceeEEEEcCCCcCC---HHHHhhhCCCC---CCcchHHHHHHHHHHhhcCCCeEEEEeecC
Q 042171 64 EVNFDYAFMDADKDNY---CNYMREQVPDH---FRGSSKQAILDLNRSLVDDPCVQLSHVALG 120 (125)
Q Consensus 64 ~~~fD~v~id~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~ 120 (125)
...+|++++...+..- +...+...... .-..+..+++.||..+.+..++-..++|.+
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~~AcrtyN~L~~EgR~VaaaLip~~ 114 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTRNACATFNFLAEEGRRVAAALIPPG 114 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 3579999998776421 22222111111 111388899999999999989999999864
No 356
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.08 E-value=97 Score=21.91 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=43.9
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe----CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID----ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD----~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
|..+.+++|-.|+. |..+..+++.+ ..+.+|+.++ .....++.++..|..+.+...... .++.|.++..+.
T Consensus 1 ~~l~~k~~lVtGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~---~~~id~lv~~ag 76 (235)
T PRK06550 1 QEFMTKTVLITGAA-SGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDW---VPSVDILCNTAG 76 (235)
T ss_pred CCCCCCEEEEcCCC-chHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHh---hCCCCEEEECCC
Confidence 44556778877764 45555556554 3356888888 122346888888886643332221 357899997765
No 357
>PRK07045 putative monooxygenase; Reviewed
Probab=47.65 E-value=33 Score=26.74 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=27.3
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|..+..+|+-||.|.+-.++.++.+-. +-+|+-+|
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E 35 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGAR-GHSVTVVE 35 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEe
Confidence 555667899999998877777666544 67899999
No 358
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=47.63 E-value=87 Score=22.73 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=39.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeCCC---------CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDARV---------DHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~~~---------~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
+.++||-||. |.++..-++.+ ..+++|+.++... ..+++++.++.... .+ ..+|+|++.
T Consensus 8 ~gk~vlVvGg--G~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~--dl-------~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGG--GDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDAD--IL-------EGAFLVIAA 76 (205)
T ss_pred CCCeEEEECc--CHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHH--Hh-------CCcEEEEEC
Confidence 5679999998 45555444433 3367888887111 13788888876532 22 569999986
Q ss_pred CCCc
Q 042171 74 ADKD 77 (125)
Q Consensus 74 ~~~~ 77 (125)
.+.+
T Consensus 77 t~d~ 80 (205)
T TIGR01470 77 TDDE 80 (205)
T ss_pred CCCH
Confidence 5543
No 359
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=47.44 E-value=1e+02 Score=22.00 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=43.2
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe-----------CCCCCcEEEEecchHHH------HHHHhhcCC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID-----------ARVDHKINFIESEALSV------LDQLLKDSE 62 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~------l~~~~~~~~ 62 (125)
|..+.++||-.|++. ..+..+++.+ ..+.+|+.++ .....++.++..|..+. +......
T Consensus 1 ~~~~~k~vlItGas~-gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-- 77 (248)
T TIGR01832 1 FSLEGKVALVTGANT-GLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE-- 77 (248)
T ss_pred CCCCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH--
Confidence 345678899999854 4566666655 3356888887 11234577777776642 1111111
Q ss_pred CCCceeEEEEcCCC
Q 042171 63 NEVNFDYAFMDADK 76 (125)
Q Consensus 63 ~~~~fD~v~id~~~ 76 (125)
.+..|.++..+..
T Consensus 78 -~~~~d~li~~ag~ 90 (248)
T TIGR01832 78 -FGHIDILVNNAGI 90 (248)
T ss_pred -cCCCCEEEECCCC
Confidence 2568999876653
No 360
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=47.34 E-value=88 Score=24.26 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=20.2
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||-.|+| .|..++.+|++.+ -.+|+++|
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~ 223 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVD 223 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEc
Confidence 3578778864 3555666777664 22688888
No 361
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=47.26 E-value=1.1e+02 Score=22.85 Aligned_cols=30 Identities=10% Similarity=-0.104 Sum_probs=22.8
Q ss_pred CCEEEEEc--CcccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIG--VFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG--~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||-.| .+.|..++.+|++.+ .+|++++
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~ 175 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCA 175 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcC--CEEEEEe
Confidence 45787777 577888888999874 6788776
No 362
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=47.16 E-value=71 Score=25.37 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=42.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---CCC------------CCcEEEEecchHHH--HHHHhhcCCCCCc
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIP-EDGQITAID---ARV------------DHKINFIESEALSV--LDQLLKDSENEVN 66 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---~~~------------~~~i~~~~gd~~~~--l~~~~~~~~~~~~ 66 (125)
..+||-+| |+|+.+..+++.+- .+.+|+++. .+. ..+++++.+|..+. +....... ...
T Consensus 60 ~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--~~~ 136 (390)
T PLN02657 60 DVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE--GDP 136 (390)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh--CCC
Confidence 45788888 68999999888763 356888888 111 13688899988653 23222100 016
Q ss_pred eeEEEEcC
Q 042171 67 FDYAFMDA 74 (125)
Q Consensus 67 fD~v~id~ 74 (125)
+|.|+.-+
T Consensus 137 ~D~Vi~~a 144 (390)
T PLN02657 137 VDVVVSCL 144 (390)
T ss_pred CcEEEECC
Confidence 89998643
No 363
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=46.82 E-value=1.2e+02 Score=22.51 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=42.3
Q ss_pred CCEEEEEc-CcccHHHHHHHhhCCCCCEEEEEeC---CCC--CcEEEEecc-------hHHHHHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIG-VFTGYSLFLTALTIPEDGQITAIDA---RVD--HKINFIESE-------ALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG-~g~G~~t~~la~~~~~~~~v~~iD~---~~~--~~i~~~~gd-------~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
|..+|=.| .|+|-+|+ |+.++...-+...|. .+. .++.++..| ..+.+..+.. ....||-|+
T Consensus 12 ~~~~liyG~~G~GKtt~--a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~---~~~~ydtVV 86 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTST--IKYLPGKTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNI---QAVKYDNIV 86 (220)
T ss_pred CcEEEEECCCCCCHHHH--HHhcCCCCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHh---ccccCCEEE
Confidence 55677777 78899885 445664466777771 111 345555433 2233322211 246799999
Q ss_pred EcCCCcCCHHHHh
Q 042171 72 MDADKDNYCNYMR 84 (125)
Q Consensus 72 id~~~~~~~~~~~ 84 (125)
+|.-......++.
T Consensus 87 IDsI~~l~~~~~~ 99 (220)
T TIGR01618 87 IDNISALQNLWLE 99 (220)
T ss_pred EecHHHHHHHHHH
Confidence 9876544444444
No 364
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=46.72 E-value=32 Score=27.84 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=23.3
Q ss_pred CEEEEEcCc-ccHHHHH-HHhhCCCCCEEEEEe
Q 042171 6 KKTIEIGVF-TGYSLFL-TALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG~g-~G~~t~~-la~~~~~~~~v~~iD 36 (125)
..|+-||.| +|.++.+ |+++-+ +.+|+-+|
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~-G~~V~vlE 56 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRP-ALDVLVLE 56 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCC-CCeEEEEe
Confidence 368999998 8998885 555444 67899999
No 365
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=46.66 E-value=1.1e+02 Score=22.19 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe----------CCCCCcEEEEecchHHH------HHHHhhcCCC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID----------ARVDHKINFIESEALSV------LDQLLKDSEN 63 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD----------~~~~~~i~~~~gd~~~~------l~~~~~~~~~ 63 (125)
|..+.+.+|-.|+. |..+..+++.+ ..+.+|+.++ .....++.+++.|..+. +....+.
T Consensus 1 m~~~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--- 76 (262)
T TIGR03325 1 MRLKGEVVLVTGGA-SGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA--- 76 (262)
T ss_pred CCcCCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHH---
Confidence 55667888888875 44566666655 3467898888 11234577777766532 1121111
Q ss_pred CCceeEEEEcCC
Q 042171 64 EVNFDYAFMDAD 75 (125)
Q Consensus 64 ~~~fD~v~id~~ 75 (125)
.+..|.++..+.
T Consensus 77 ~g~id~li~~Ag 88 (262)
T TIGR03325 77 FGKIDCLIPNAG 88 (262)
T ss_pred hCCCCEEEECCC
Confidence 256899988765
No 366
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=46.63 E-value=6.9 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..|++|||+|.|+|....++-.-+|+--.++-+|
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile 145 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILE 145 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhc
Confidence 4688999999999987776666667433455555
No 367
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.58 E-value=1.4e+02 Score=23.32 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=20.8
Q ss_pred CCCEEEEEcC-cc-cHHHHHHHhhCCCCC-----EEEEEe
Q 042171 4 KLKKTIEIGV-FT-GYSLFLTALTIPEDG-----QITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~-g~-G~~t~~la~~~~~~~-----~v~~iD 36 (125)
+|.+|.-||+ |. |++.++.+..-.--+ +++-+|
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 40 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLE 40 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEe
Confidence 5789999998 66 776555333211123 688888
No 368
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=46.42 E-value=1.2e+02 Score=23.80 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=20.2
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||-||||. |...+...-+.+ -++++-+|
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD 55 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIAD 55 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 457899999973 333333222333 36899999
No 369
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=46.28 E-value=31 Score=25.54 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=41.8
Q ss_pred EEEEcCcccHHHHHHHhhCCC-CCEEEEEeC---CC---CCcEEEEecchHHH--HHHHhhcCCCCCce-eEEEEcCCCc
Q 042171 8 TIEIGVFTGYSLFLTALTIPE-DGQITAIDA---RV---DHKINFIESEALSV--LDQLLKDSENEVNF-DYAFMDADKD 77 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~~-~~~v~~iD~---~~---~~~i~~~~gd~~~~--l~~~~~~~~~~~~f-D~v~id~~~~ 77 (125)
||-.|+ +|+.+..+++++.+ +.+|++++. .. ...++++.+|..+. .... .... |.|+.-+...
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDEL------AKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHH------HhcCCCEEEEccccC
Confidence 888887 99999999999864 468999991 11 12567777776553 1211 1223 8888766543
No 370
>PRK06370 mercuric reductase; Validated
Probab=46.10 E-value=39 Score=27.31 Aligned_cols=35 Identities=11% Similarity=-0.012 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|+.+.-.|+-||+|+|-.+..+..+-. +.+|.-+|
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie 35 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIE 35 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEe
Confidence 455567899999998655555443332 57899899
No 371
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=45.74 E-value=1.1e+02 Score=23.51 Aligned_cols=32 Identities=25% Similarity=0.177 Sum_probs=22.5
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-+|+| -|.|+..+.-+.+ =|+++-||
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsG-ig~itlID 61 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSG-IGRITLID 61 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcC-CCeEEEEe
Confidence 45678888864 5777766555544 48999999
No 372
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=45.23 E-value=44 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=26.8
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
.+.+|+-+|+|. |..++..|++++ ++|+++|
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D 195 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFD 195 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEe
Confidence 578999999985 888888999885 5899999
No 373
>PLN02206 UDP-glucuronate decarboxylase
Probab=44.85 E-value=90 Score=25.38 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeC---CC---------CCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDA---RV---------DHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~---~~---------~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
.+.++||-.| |+|+.+.++++.+- .+-+|+++|. +. ..+++++.+|..+. .+ ..+|.
T Consensus 117 ~~~~kILVTG-atGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~--~l-------~~~D~ 186 (442)
T PLN02206 117 RKGLRVVVTG-GAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEP--IL-------LEVDQ 186 (442)
T ss_pred cCCCEEEEEC-cccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccCh--hh-------cCCCE
Confidence 4567888776 57999999999874 3457999871 11 13578888887543 22 34788
Q ss_pred EEEcCC
Q 042171 70 AFMDAD 75 (125)
Q Consensus 70 v~id~~ 75 (125)
||-=++
T Consensus 187 ViHlAa 192 (442)
T PLN02206 187 IYHLAC 192 (442)
T ss_pred EEEeee
Confidence 886444
No 374
>PRK06847 hypothetical protein; Provisional
Probab=44.61 E-value=41 Score=25.94 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=23.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-||.|.+-.++.++.+-. +.+|+-+|
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E 34 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVE 34 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEe
Confidence 577999999987776666554432 56899999
No 375
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.19 E-value=1.1e+02 Score=21.63 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=41.7
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeC-------------CCCCcEEEEecchHH--HHHHHhhcC-CC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDA-------------RVDHKINFIESEALS--VLDQLLKDS-EN 63 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~-------------~~~~~i~~~~gd~~~--~l~~~~~~~-~~ 63 (125)
|..+.+++|-+|+ +|..+..+++.+. .+.+|+.++. ....++.+++.|..+ .+..+.... ..
T Consensus 1 ~~~~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 1 MDLKDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5567788998886 4555555665542 3568888881 123456777777542 111111100 00
Q ss_pred CCceeEEEEcCC
Q 042171 64 EVNFDYAFMDAD 75 (125)
Q Consensus 64 ~~~fD~v~id~~ 75 (125)
..++|.|+..+.
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 256899997655
No 376
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=43.78 E-value=1.2e+02 Score=23.66 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=38.9
Q ss_pred CCEEEEEc--CcccHHHHHHHhhCCCCCEEEEEe-----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIG--VFTGYSLFLTALTIPEDGQITAID-----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG--~g~G~~t~~la~~~~~~~~v~~iD-----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
.++||-.| .|.|..++.||++++ ++++++- .|-+.-+.....|..+.+.++. ....+|+|+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t----~g~gvDvv~ 216 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELT----GGKGVDVVL 216 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHc----CCCCceEEE
Confidence 46888888 566777888999985 2433333 3333345566666666655542 134699998
Q ss_pred E
Q 042171 72 M 72 (125)
Q Consensus 72 i 72 (125)
-
T Consensus 217 D 217 (326)
T COG0604 217 D 217 (326)
T ss_pred E
Confidence 5
No 377
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=43.69 E-value=1.5e+02 Score=22.82 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=43.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeCC----------C--CCcEEEEecchHHH--HHHHhhcCCCCCcee
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDAR----------V--DHKINFIESEALSV--LDQLLKDSENEVNFD 68 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~~----------~--~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD 68 (125)
+..+||-.|. +|+.+..+++.+- .+.+|++++.. + ..+++++.+|..+. +..+ -..+|
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~~~d 81 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA------VKGCD 81 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH------HcCCC
Confidence 4568888884 7999999998774 34588887710 1 24688899887653 2222 13479
Q ss_pred EEEEcCCC
Q 042171 69 YAFMDADK 76 (125)
Q Consensus 69 ~v~id~~~ 76 (125)
.|+--++.
T Consensus 82 ~Vih~A~~ 89 (353)
T PLN02896 82 GVFHVAAS 89 (353)
T ss_pred EEEECCcc
Confidence 88865543
No 378
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=43.61 E-value=43 Score=27.29 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=26.7
Q ss_pred CCCCEEEEEcCcccHHHHH-HHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFL-TALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~-la~~~~~~~~v~~iD 36 (125)
.+++++|-+|..+|+...+ +|+++..++.+++++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~ 73 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVF 73 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEe
Confidence 4578999999999998886 777775467777775
No 379
>PRK07478 short chain dehydrogenase; Provisional
Probab=43.44 E-value=1.2e+02 Score=21.76 Aligned_cols=72 Identities=17% Similarity=0.059 Sum_probs=41.3
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe-------------CCCCCcEEEEecchHHH------HHHHhhc
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID-------------ARVDHKINFIESEALSV------LDQLLKD 60 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~------l~~~~~~ 60 (125)
|..+.+.+|-.|++ |..+..+++.+ ..+.+|+.++ .....++.++..|..+. +....+.
T Consensus 2 ~~~~~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 2 MRLNGKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 34456788888875 44455555554 3356888877 11123567777776532 2222111
Q ss_pred CCCCCceeEEEEcCCC
Q 042171 61 SENEVNFDYAFMDADK 76 (125)
Q Consensus 61 ~~~~~~fD~v~id~~~ 76 (125)
.+.+|.++..+..
T Consensus 81 ---~~~id~li~~ag~ 93 (254)
T PRK07478 81 ---FGGLDIAFNNAGT 93 (254)
T ss_pred ---cCCCCEEEECCCC
Confidence 2579999987753
No 380
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=43.42 E-value=68 Score=25.60 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=42.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEeC---------CCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPE-DGQITAIDA---------RVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDA 74 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD~---------~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~ 74 (125)
.++|+=+|+ |..+..+++.+.. +.+++.+|. .....+.++.||+.+.- .+... .-..+|.|++-.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~-~L~~~--~~~~a~~vi~~~ 305 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQE-LLEEE--GIDEADAFIALT 305 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHH-HHHhc--CCccCCEEEECC
Confidence 467888887 8888888887753 568999981 11135678999986541 12110 135788888743
Q ss_pred C
Q 042171 75 D 75 (125)
Q Consensus 75 ~ 75 (125)
.
T Consensus 306 ~ 306 (453)
T PRK09496 306 N 306 (453)
T ss_pred C
Confidence 3
No 381
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.90 E-value=24 Score=22.47 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=36.1
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEeCCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDN 78 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~ 78 (125)
..+|| +-||+|.+|-.++..+.+-. -+.++ .+++......+. +.. ...+|+|++....+.
T Consensus 3 ~~~IL-l~C~~G~sSS~l~~k~~~~~----~~~gi--~~~v~a~~~~~~-~~~------~~~~Dvill~pqi~~ 62 (95)
T TIGR00853 3 ETNIL-LLCAAGMSTSLLVNKMNKAA----EEYGV--PVKIAAGSYGAA-GEK------LDDADVVLLAPQVAY 62 (95)
T ss_pred ccEEE-EECCCchhHHHHHHHHHHHH----HHCCC--cEEEEEecHHHH-Hhh------cCCCCEEEECchHHH
Confidence 45677 67888999888888765211 11233 256666666554 222 256899998544433
No 382
>PRK07877 hypothetical protein; Provisional
Probab=41.52 E-value=1e+02 Score=27.14 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=23.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-+|||-|...+...-+.+--|+++-+|
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD 138 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLAD 138 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEc
Confidence 467899999997776655443343127899999
No 383
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.36 E-value=1.1e+02 Score=24.82 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCCEEEEEc-CcccHHHHH--HHhhCC-----CCC--EEEEEe-------------CCCCCcEEEEecchHHHHHH-Hhh
Q 042171 4 KLKKTIEIG-VFTGYSLFL--TALTIP-----EDG--QITAID-------------ARVDHKINFIESEALSVLDQ-LLK 59 (125)
Q Consensus 4 ~~~~vLeiG-~g~G~~t~~--la~~~~-----~~~--~v~~iD-------------~~~~~~i~~~~gd~~~~l~~-~~~ 59 (125)
++..|+=+| +|+|-+|.. ||..+. .+. .++++| +.. -.+.+......+.+.. +..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~-lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI-MGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhc-CCcceEeeCcHHHHHHHHHH
Confidence 355666677 788988775 554332 122 356667 111 1233333333222222 211
Q ss_pred cCCCCCceeEEEEcCCCcCC
Q 042171 60 DSENEVNFDYAFMDADKDNY 79 (125)
Q Consensus 60 ~~~~~~~fD~v~id~~~~~~ 79 (125)
...+|+|++|...++.
T Consensus 252 ----~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 252 ----SKDFDLVLVDTIGKSP 267 (388)
T ss_pred ----hCCCCEEEEcCCCCCc
Confidence 3569999999886654
No 384
>PRK06849 hypothetical protein; Provisional
Probab=41.31 E-value=39 Score=26.65 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=24.3
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID 36 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD 36 (125)
+..+++||-+|++.+ .++.+++.+.+ +.+|+++|
T Consensus 1 ~~~~~~VLI~G~~~~-~~l~iar~l~~~G~~Vi~~d 35 (389)
T PRK06849 1 MNTKKTVLITGARAP-AALELARLFHNAGHTVILAD 35 (389)
T ss_pred CCCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEe
Confidence 356789999998764 45555665542 56899999
No 385
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=40.93 E-value=1.4e+02 Score=21.67 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=40.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe-------CCC--CCcEEEEecchHHHHHHHhhcCCCC-CceeEEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID-------ARV--DHKINFIESEALSVLDQLLKDSENE-VNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD-------~~~--~~~i~~~~gd~~~~l~~~~~~~~~~-~~fD~v~i 72 (125)
+.++||-+|+ +|..+..+++.+ ..+.+|+++- ..+ ..+++++++|..+....+.+. - ..+|.||+
T Consensus 16 ~~~~ilItGa-sG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~---~~~~~d~vi~ 91 (251)
T PLN00141 16 KTKTVFVAGA-TGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEA---IGDDSDAVIC 91 (251)
T ss_pred cCCeEEEECC-CcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHH---hhcCCCEEEE
Confidence 3568888885 456666666655 3345787765 111 236889999886521222111 1 35899997
Q ss_pred cCC
Q 042171 73 DAD 75 (125)
Q Consensus 73 d~~ 75 (125)
.+.
T Consensus 92 ~~g 94 (251)
T PLN00141 92 ATG 94 (251)
T ss_pred CCC
Confidence 654
No 386
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=40.43 E-value=11 Score=29.75 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=42.8
Q ss_pred CCCEEEEEcCcccHHHH-HHHhhCCCCCEEEEEe---------------CCCCCcEEEEecchHHHHHHHhhcCCCCCce
Q 042171 4 KLKKTIEIGVFTGYSLF-LTALTIPEDGQITAID---------------ARVDHKINFIESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~-~la~~~~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~f 67 (125)
...-|+|+=+|.||.|+ .+.++ + ...|+|+| .++.++..+++||....-| ....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~A 263 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRA 263 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccc
Confidence 34678999999999999 44443 3 46899999 3345667777787765433 4567
Q ss_pred eEEEEcC
Q 042171 68 DYAFMDA 74 (125)
Q Consensus 68 D~v~id~ 74 (125)
|-|.+.-
T Consensus 264 drVnLGL 270 (351)
T KOG1227|consen 264 DRVNLGL 270 (351)
T ss_pred hheeecc
Confidence 7777753
No 387
>PLN02740 Alcohol dehydrogenase-like
Probab=40.33 E-value=1.7e+02 Score=22.86 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=20.3
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||-+|+| .|..++.+|++.+ ..+|+++|
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~ 230 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARG-ASKIIGVD 230 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEc
Confidence 4578888864 3555566777664 23688888
No 388
>PRK07411 hypothetical protein; Validated
Probab=40.19 E-value=1.2e+02 Score=24.31 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=21.1
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||-|||| .|...+...-+.+ =++++-+|
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~G-vg~l~lvD 69 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAG-IGRIGIVD 69 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence 45789999998 4444433333334 47899999
No 389
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=40.16 E-value=67 Score=22.24 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
.+|.+|+-+|.|. |..++.++++++ .+++.+|
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d 50 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPD 50 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEE
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCC--CEEEecc
Confidence 3678999999884 777888888884 8999999
No 390
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=39.48 E-value=56 Score=25.40 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=25.8
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|..+.-.|+-||.|.+-+++.++.+-. +-+|+-+|
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE 35 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLE 35 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcC-CCEEEEEc
Confidence 344556899999988877777665433 57899999
No 391
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=39.33 E-value=1.6e+02 Score=21.82 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCEEEEE-cCcccHHHHH--HHhhCCCC-CEEEEEe----CCC--CCcEEEEec----chHHHHHHHhhcCCCCCceeEE
Q 042171 5 LKKTIEI-GVFTGYSLFL--TALTIPED-GQITAID----ARV--DHKINFIES----EALSVLDQLLKDSENEVNFDYA 70 (125)
Q Consensus 5 ~~~vLei-G~g~G~~t~~--la~~~~~~-~~v~~iD----~~~--~~~i~~~~g----d~~~~l~~~~~~~~~~~~fD~v 70 (125)
..+||=. ++|+|-+|+. ++..+++. .+++++| ..+ ...+.+... +..+.+.... -...|.|
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----R~~pD~i 201 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL-----RQDPDVI 201 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT-----TS--SEE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh-----cCCCCcc
Confidence 3456666 4899999986 55567766 8999999 222 234555544 3334444331 2457999
Q ss_pred EEc
Q 042171 71 FMD 73 (125)
Q Consensus 71 ~id 73 (125)
+++
T Consensus 202 iig 204 (270)
T PF00437_consen 202 IIG 204 (270)
T ss_dssp EES
T ss_pred ccc
Confidence 885
No 392
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=39.22 E-value=1.1e+02 Score=23.37 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=42.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC---CEEEEEeC---C-------C-CCcEEEEecchHHHHHHHhhcCCCCCceeE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPED---GQITAIDA---R-------V-DHKINFIESEALSVLDQLLKDSENEVNFDY 69 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~---~~v~~iD~---~-------~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~ 69 (125)
+.++||-.|. +|..+..+++.+-.. .+|+.++. . + ..+++++.+|..+.- .+..- -..+|.
T Consensus 3 ~~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~-~l~~~---~~~iD~ 77 (324)
T TIGR03589 3 NNKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKE-RLTRA---LRGVDY 77 (324)
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHH-HHHHH---HhcCCE
Confidence 4578887775 688888888876322 47888871 1 1 136888999887642 12110 135899
Q ss_pred EEEcCCC
Q 042171 70 AFMDADK 76 (125)
Q Consensus 70 v~id~~~ 76 (125)
||.-++.
T Consensus 78 Vih~Ag~ 84 (324)
T TIGR03589 78 VVHAAAL 84 (324)
T ss_pred EEECccc
Confidence 9876553
No 393
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=39.00 E-value=1.7e+02 Score=22.54 Aligned_cols=30 Identities=7% Similarity=-0.205 Sum_probs=23.5
Q ss_pred CCEEEEEcC--cccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGV--FTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~--g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||-.|+ +.|..++.+|++.+ .+|++++
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~ 190 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSA 190 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcC--CEEEEEc
Confidence 468888886 57888888999874 6788876
No 394
>PRK05717 oxidoreductase; Validated
Probab=38.90 E-value=1.5e+02 Score=21.39 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=41.9
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe----------CCCCCcEEEEecchHHH------HHHHhhcCCCCCc
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID----------ARVDHKINFIESEALSV------LDQLLKDSENEVN 66 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD----------~~~~~~i~~~~gd~~~~------l~~~~~~~~~~~~ 66 (125)
+.+++|-.|.. |..+..+++.+ ..+.+|+.++ ..+..++.++..|..+. +..+.+. .++
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~---~g~ 84 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQ---FGR 84 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHH---hCC
Confidence 45678877764 55666666665 3356888887 11234677788876642 1222211 256
Q ss_pred eeEEEEcCCC
Q 042171 67 FDYAFMDADK 76 (125)
Q Consensus 67 fD~v~id~~~ 76 (125)
+|.++..+..
T Consensus 85 id~li~~ag~ 94 (255)
T PRK05717 85 LDALVCNAAI 94 (255)
T ss_pred CCEEEECCCc
Confidence 8999987664
No 395
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=38.58 E-value=1.9e+02 Score=22.66 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=24.6
Q ss_pred CCEEEEEc-CcccHHHHH--HHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIG-VFTGYSLFL--TALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG-~g~G~~t~~--la~~~~~~~~v~~iD 36 (125)
..+||-.| +|+|-+|+. |+..+|++-+++++|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiE 194 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVE 194 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEec
Confidence 34666665 899999886 556778778999998
No 396
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=38.57 E-value=1e+02 Score=23.50 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=17.1
Q ss_pred CcccHHHHH--HHhhCCCCCEEEEEe
Q 042171 13 VFTGYSLFL--TALTIPEDGQITAID 36 (125)
Q Consensus 13 ~g~G~~t~~--la~~~~~~~~v~~iD 36 (125)
.|+|-+|+. |+..+...|+|-.|+
T Consensus 10 ~gSGKTTLi~~Li~~L~~~G~V~~IK 35 (274)
T PRK14493 10 KATGKTTLVERLVDRLSGRGRVGTVK 35 (274)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 588888886 555555456888887
No 397
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=38.18 E-value=1e+02 Score=22.90 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=20.6
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
.|+-||+|.+-+++.++.+-. +-+|+-+|
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E 31 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA-GIDVTIIE 31 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TCEEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhc-ccccccch
Confidence 588999998877777665543 57899999
No 398
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=38.16 E-value=1.5e+02 Score=23.26 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=40.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCC---CEEEEEe--------CCCCCcEEEEecchHHH-HHHHhhcCCCCCceeEE
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPED---GQITAID--------ARVDHKINFIESEALSV-LDQLLKDSENEVNFDYA 70 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~---~~v~~iD--------~~~~~~i~~~~gd~~~~-l~~~~~~~~~~~~fD~v 70 (125)
.++..|+=+|++.|+--..|.+..++= -+-+.+| .++ .+|++++.=..+. +..+.+. ... |++
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l-~~v~l~~~fftee~~~~~~~~---~~~-~il 131 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEEL-SNVTLIQRFFTEEYARRLRDK---LNL-KIL 131 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT--TTEEEEES---HHHHHHHHHH---HTT-EEE
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhccc-CcEEeehhhCCHHHHHHHHhh---cCC-CeE
Confidence 355689999999999999999887732 3689999 234 4589888766553 2334322 234 888
Q ss_pred EE
Q 042171 71 FM 72 (125)
Q Consensus 71 ~i 72 (125)
|+
T Consensus 132 lI 133 (294)
T PF01358_consen 132 LI 133 (294)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 399
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=38.01 E-value=53 Score=25.59 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=23.4
Q ss_pred CEEEEEc-CcccHHHHHHHhhCCCCCEEEEEe
Q 042171 6 KKTIEIG-VFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG-~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+-|+-+| ||+|-+.+.+..+-. .+.|++.|
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaD 35 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVD 35 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcEEecc
Confidence 4566677 899999888766554 58999999
No 400
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.87 E-value=1.5e+02 Score=23.86 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeC-C-------CC---CcEEEEecchHHHHHHHhhcCCCCCcee
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDA-R-------VD---HKINFIESEALSVLDQLLKDSENEVNFD 68 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~-~-------~~---~~i~~~~gd~~~~l~~~~~~~~~~~~fD 68 (125)
|....++|+-+|.| -++...|+.+. .+.+|+..|. . +. ..+++..+...+. . ...+|
T Consensus 1 ~~~~~~~~~v~G~g--~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~---~------~~~~d 69 (445)
T PRK04308 1 MTFQNKKILVAGLG--GTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDA---L------DNGFD 69 (445)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHH---H------HhCCC
Confidence 45556788888764 34444455442 3578899992 1 11 1344444432211 1 14589
Q ss_pred EEEEcCCCc-CCHHH
Q 042171 69 YAFMDADKD-NYCNY 82 (125)
Q Consensus 69 ~v~id~~~~-~~~~~ 82 (125)
+|+.....+ ..+.+
T Consensus 70 ~vv~spgi~~~~p~~ 84 (445)
T PRK04308 70 ILALSPGISERQPDI 84 (445)
T ss_pred EEEECCCCCCCCHHH
Confidence 999876643 34433
No 401
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=37.86 E-value=1.8e+02 Score=22.05 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=34.5
Q ss_pred CcccHHHHHHHhhCCCCCEEEEEe------------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 042171 13 VFTGYSLFLTALTIPEDGQITAID------------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD---KD 77 (125)
Q Consensus 13 ~g~G~~t~~la~~~~~~~~v~~iD------------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~---~~ 77 (125)
.+.|.=.+ .++.+.++-+++.+| ..-..++++++.|+.+.+..+.. +...=-+|+||-. +.
T Consensus 64 ~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~allP---P~~rRglVLIDPpYE~~~ 139 (245)
T PF04378_consen 64 FYPGSPAI-AARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALLP---PPERRGLVLIDPPYEQKD 139 (245)
T ss_dssp EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-S----TTS-EEEEE-----STT
T ss_pred cCCCCHHH-HHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhCC---CCCCCeEEEECCCCCCch
Confidence 34454333 344456578999999 22235899999999998766542 2345679999975 33
Q ss_pred CCHHHHh
Q 042171 78 NYCNYMR 84 (125)
Q Consensus 78 ~~~~~~~ 84 (125)
.|....+
T Consensus 140 dy~~v~~ 146 (245)
T PF04378_consen 140 DYQRVVD 146 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 402
>PF14252 DUF4347: Domain of unknown function (DUF4347)
Probab=37.72 E-value=65 Score=22.82 Aligned_cols=48 Identities=15% Similarity=0.358 Sum_probs=33.6
Q ss_pred EEEEcCCCcCCHHHHhhhCCCC----CCcchHHHHHHHHHHhhcCCCeEEEEe
Q 042171 69 YAFMDADKDNYCNYMREQVPDH----FRGSSKQAILDLNRSLVDDPCVQLSHV 117 (125)
Q Consensus 69 ~v~id~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~l 117 (125)
+||+|+...+|...+...-+.. -+ ....++....+.|.+.+++.+.++
T Consensus 2 lv~iD~~v~d~~~L~~~l~~~~~v~~ld-~~~d~~~qI~~~L~~~~~i~~lhi 53 (165)
T PF14252_consen 2 LVFIDSRVEDYESLLAGLPPGVEVVILD-PSRDGLEQIAQALAGYQNIDALHI 53 (165)
T ss_pred EEEEeCCCCCHHHHHhcCcCCCEEEEEe-CCCchHHHHHHHHhcCCCCceEEE
Confidence 6889999888888877433221 11 244568888888888888887775
No 403
>PRK07236 hypothetical protein; Provisional
Probab=37.64 E-value=63 Score=25.24 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+.+.+|+-||.|.+-.++.++.+-. +-+|+-+|
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEe
Confidence 4567899999988776666555443 57899999
No 404
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=37.54 E-value=1.7e+02 Score=22.12 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=22.9
Q ss_pred CEEEEEcC--cccHHHHHHHhhCCCCC-EEEEEe
Q 042171 6 KKTIEIGV--FTGYSLFLTALTIPEDG-QITAID 36 (125)
Q Consensus 6 ~~vLeiG~--g~G~~t~~la~~~~~~~-~v~~iD 36 (125)
.+||-.|. +.|..++.+|++.+ . +|++++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~ 187 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG--CSRVVGIC 187 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEc
Confidence 68888884 68888888999874 4 788886
No 405
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=37.50 E-value=1.6e+02 Score=21.33 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=41.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe----------CCCCCcEEEEecchHHH------HHHHhhcCCCC
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID----------ARVDHKINFIESEALSV------LDQLLKDSENE 64 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD----------~~~~~~i~~~~gd~~~~------l~~~~~~~~~~ 64 (125)
..+.+++|-.|+.. ..+..+++.+ ..+.+|+.++ ..+..++.+++.|..+. +...... .
T Consensus 3 ~~~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~---~ 78 (263)
T PRK06200 3 WLHGQVALITGGGS-GIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA---F 78 (263)
T ss_pred CCCCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh---c
Confidence 34567888888654 4455556554 3356888888 12234577777776532 2222111 3
Q ss_pred CceeEEEEcCCC
Q 042171 65 VNFDYAFMDADK 76 (125)
Q Consensus 65 ~~fD~v~id~~~ 76 (125)
+.+|.++..+..
T Consensus 79 g~id~li~~ag~ 90 (263)
T PRK06200 79 GKLDCFVGNAGI 90 (263)
T ss_pred CCCCEEEECCCC
Confidence 578999877653
No 406
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.43 E-value=1.3e+02 Score=24.90 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=37.5
Q ss_pred CCCEEEEEc-CcccHHHHHHHhh--C-CCCCE--EEEEe------------CCCCCcEEEE-ecchHHH---HHHHhhcC
Q 042171 4 KLKKTIEIG-VFTGYSLFLTALT--I-PEDGQ--ITAID------------ARVDHKINFI-ESEALSV---LDQLLKDS 61 (125)
Q Consensus 4 ~~~~vLeiG-~g~G~~t~~la~~--~-~~~~~--v~~iD------------~~~~~~i~~~-~gd~~~~---l~~~~~~~ 61 (125)
++..|+=+| +|+|-+|.....+ + ..+.+ +++.| ..-...+.++ ..+..+. +..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~-- 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE-- 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh--
Confidence 456777777 7889888764443 2 22223 44555 0001123333 2233332 232211
Q ss_pred CCCCceeEEEEcCCCcCC
Q 042171 62 ENEVNFDYAFMDADKDNY 79 (125)
Q Consensus 62 ~~~~~fD~v~id~~~~~~ 79 (125)
...+|+|++|...+++
T Consensus 318 --~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 318 --EARVDYILIDTAGKNY 333 (436)
T ss_pred --ccCCCEEEEeCccccC
Confidence 1359999999887655
No 407
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.11 E-value=77 Score=21.57 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=35.2
Q ss_pred CCCEEEEEcCcccH-HHHHHHhhCCCCCEEEEEe---CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 4 KLKKTIEIGVFTGY-SLFLTALTIPEDGQITAID---ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~-~t~~la~~~~~~~~v~~iD---~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
++.+|+|||.|.=. .+-.|++. +..|+++| ....+-++++..|..+- .+.- =...|+|++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~a~~g~~~v~DDitnP--~~~i----Y~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKTAPEGLRFVVDDITNP--NISI----YEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccccCcccceEEEccCCCc--cHHH----hhCccceee
Confidence 46699999986422 22233332 46799999 11225578888887652 2211 144777775
No 408
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=36.99 E-value=89 Score=25.50 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=41.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC---CCEEEEEe-------------------------------CCCCCcEEEEecc
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPE---DGQITAID-------------------------------ARVDHKINFIESE 49 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~---~~~v~~iD-------------------------------~~~~~~i~~~~gd 49 (125)
..++|+-||.| +.++++++.+.. +.+|+-|| ..-..+++++++.
T Consensus 2 ~~~~iVIlGgG--fgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~ 79 (405)
T COG1252 2 MKKRIVILGGG--FGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGE 79 (405)
T ss_pred CCceEEEECCc--HHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEE
Confidence 35689999985 555566665542 37799999 1112358888887
Q ss_pred hHHHHHHHhhc---C-CCCCceeEEEEcCC
Q 042171 50 ALSVLDQLLKD---S-ENEVNFDYAFMDAD 75 (125)
Q Consensus 50 ~~~~l~~~~~~---~-~~~~~fD~v~id~~ 75 (125)
..++-+. .+. . ...-+||..++...
T Consensus 80 V~~ID~~-~k~V~~~~~~~i~YD~LVvalG 108 (405)
T COG1252 80 VTDIDRD-AKKVTLADLGEISYDYLVVALG 108 (405)
T ss_pred EEEEccc-CCEEEeCCCccccccEEEEecC
Confidence 7654111 000 0 02357999998754
No 409
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=36.93 E-value=76 Score=26.38 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=42.3
Q ss_pred CCEEEEEc-CcccHHHHHHHhhCCCCCEEEEEeC-------CC-CCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCC
Q 042171 5 LKKTIEIG-VFTGYSLFLTALTIPEDGQITAIDA-------RV-DHKINFIESEALSVLDQLLKDSENEVNFDYAFMDAD 75 (125)
Q Consensus 5 ~~~vLeiG-~g~G~~t~~la~~~~~~~~v~~iD~-------~~-~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~ 75 (125)
..+|-=|| +|+|.|+++....-. +.+|.+.|. .+ ...+++..+-..+-+. +... +|...+-
T Consensus 7 ~~~iHfIGIgG~GMsglA~iL~~~-G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~--------~~~~-VV~s~Ai 76 (459)
T COG0773 7 LPKIHFIGIGGIGMSGLAEILLNL-GYKVSGSDLAESPMTQRLEALGIEIFIGHDAENIL--------DADV-VVVSNAI 76 (459)
T ss_pred CceEEEEeeccccHHHHHHHHHhC-CCceECccccccHHHHHHHHCCCeEeCCCCHHHcC--------CCce-EEEeccc
Confidence 33555555 689999988655433 689999991 11 1235666665544221 1222 6666666
Q ss_pred CcCCHHHHh
Q 042171 76 KDNYCNYMR 84 (125)
Q Consensus 76 ~~~~~~~~~ 84 (125)
++.+|++..
T Consensus 77 ~~~NpEi~~ 85 (459)
T COG0773 77 KEDNPEIVA 85 (459)
T ss_pred CCCCHHHHH
Confidence 788887766
No 410
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=36.56 E-value=1.3e+02 Score=25.63 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=44.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC---CCEEEEEeC-C------------CCCcEEEEecchHHH--HHHHhhcCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPE---DGQITAIDA-R------------VDHKINFIESEALSV--LDQLLKDSENE 64 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~---~~~v~~iD~-~------------~~~~i~~~~gd~~~~--l~~~~~~~~~~ 64 (125)
.++++||-.|. +|+.+..+++.+-. +.+|+++|. . ...+++++.+|..+. +..+.. .
T Consensus 4 ~~~~~VLVTGa-tGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~----~ 78 (668)
T PLN02260 4 YEPKNILITGA-AGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLI----T 78 (668)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHh----h
Confidence 35788998884 68999988887732 458999981 1 124688999998752 222211 2
Q ss_pred CceeEEEEcCC
Q 042171 65 VNFDYAFMDAD 75 (125)
Q Consensus 65 ~~fD~v~id~~ 75 (125)
..+|.|+--++
T Consensus 79 ~~~D~ViHlAa 89 (668)
T PLN02260 79 EGIDTIMHFAA 89 (668)
T ss_pred cCCCEEEECCC
Confidence 56898885444
No 411
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=36.32 E-value=1.2e+02 Score=23.26 Aligned_cols=29 Identities=3% Similarity=-0.014 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHhhcCCCeEEEEeecCCcc
Q 042171 94 SSKQAILDLNRSLVDDPCVQLSHVALGESV 123 (125)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~ 123 (125)
.+.+++++..+.|++ .+|++++.--.-|+
T Consensus 97 lt~E~v~~vv~eL~~-~~fDyIi~DsPAGI 125 (272)
T COG2894 97 LTPEGVKKVVNELKA-MDFDYIIIDSPAGI 125 (272)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEecCcchH
Confidence 578889999999998 88999987655554
No 412
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=36.24 E-value=1.4e+02 Score=25.50 Aligned_cols=62 Identities=10% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCC--CCEEEEEe---CC---C--CCcEEEEecchHHH---HHHHhhcCCCCCceeEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPE--DGQITAID---AR---V--DHKINFIESEALSV---LDQLLKDSENEVNFDYA 70 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~--~~~v~~iD---~~---~--~~~i~~~~gd~~~~---l~~~~~~~~~~~~fD~v 70 (125)
+.++||-.| |+|+.+.++++++-. +-+|++++ .. + .++++++.+|..+. +... -..+|.|
T Consensus 314 ~~~~VLVTG-atGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~------l~~~D~V 386 (660)
T PRK08125 314 RRTRVLILG-VNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYH------IKKCDVV 386 (660)
T ss_pred cCCEEEEEC-CCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHH------hcCCCEE
Confidence 345788776 479999999988753 35899999 11 1 13689999998642 2222 1358988
Q ss_pred EE
Q 042171 71 FM 72 (125)
Q Consensus 71 ~i 72 (125)
|-
T Consensus 387 iH 388 (660)
T PRK08125 387 LP 388 (660)
T ss_pred EE
Confidence 84
No 413
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=36.23 E-value=3e+02 Score=24.18 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=23.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEE
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQI 32 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v 32 (125)
.+++-.|-.|=|+|-.|.++++..| .+++
T Consensus 321 i~~~d~l~~GDGSGGita~lLR~~p-~sr~ 349 (675)
T PF14314_consen 321 IKYRDALCGGDGSGGITACLLRMNP-TSRG 349 (675)
T ss_pred CCcceeEEEecCchHHHHHHHHhCc-ccce
Confidence 3456778999999999999999887 4554
No 414
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.17 E-value=12 Score=24.25 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=39.0
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEeCCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR 84 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~ 84 (125)
+|| +.||.|.+|-.+++.+.+-.+= .|+ .+++......+. +.. ...+|+|++....+...+.++
T Consensus 2 ~Il-l~C~~GaSSs~la~km~~~a~~----~gi--~~~i~a~~~~e~-~~~------~~~~Dvill~PQv~~~~~~i~ 65 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANALNKGAKE----RGV--PLEAAAGAYGSH-YDM------IPDYDLVILAPQMASYYDELK 65 (99)
T ss_pred EEE-EECCCCCCHHHHHHHHHHHHHH----CCC--cEEEEEeeHHHH-HHh------ccCCCEEEEcChHHHHHHHHH
Confidence 455 5679999999999987531111 233 255666555554 322 356999998666555555555
No 415
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=35.83 E-value=34 Score=26.27 Aligned_cols=65 Identities=9% Similarity=0.265 Sum_probs=35.8
Q ss_pred CEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe----------------CCCCCcEEEE-ecchHHHHHHHhhcCCCCCce
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPE-DGQITAID----------------ARVDHKINFI-ESEALSVLDQLLKDSENEVNF 67 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD----------------~~~~~~i~~~-~gd~~~~l~~~~~~~~~~~~f 67 (125)
-++||||+| .+-++=.-.+.+ +-+.++.| .++...|++. +.|...+++.+.. .++.|
T Consensus 80 i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig---~nE~y 154 (292)
T COG3129 80 IRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG---KNERY 154 (292)
T ss_pred eEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc---cccee
Confidence 477999985 444442222221 23555555 3455566665 3344445554432 26889
Q ss_pred eEEEEcCC
Q 042171 68 DYAFMDAD 75 (125)
Q Consensus 68 D~v~id~~ 75 (125)
|++.++-.
T Consensus 155 d~tlCNPP 162 (292)
T COG3129 155 DATLCNPP 162 (292)
T ss_pred eeEecCCC
Confidence 99998433
No 416
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.83 E-value=1.8e+02 Score=24.84 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=13.7
Q ss_pred CCCEEEEEc-CcccHHHHH
Q 042171 4 KLKKTIEIG-VFTGYSLFL 21 (125)
Q Consensus 4 ~~~~vLeiG-~g~G~~t~~ 21 (125)
+...|.=+| +|+|-+|+.
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 345666677 999999886
No 417
>PLN02214 cinnamoyl-CoA reductase
Probab=35.68 E-value=2e+02 Score=22.07 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=42.4
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe---CC-----------CCCcEEEEecchHHH--HHHHhhcCCCCCc
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID---AR-----------VDHKINFIESEALSV--LDQLLKDSENEVN 66 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD---~~-----------~~~~i~~~~gd~~~~--l~~~~~~~~~~~~ 66 (125)
+.++||-.|+ +|+.+..+++.+- .+.+|+++. .. ...+++++.+|..+. +... -..
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~------~~~ 81 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA------IDG 81 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH------Hhc
Confidence 3457888776 7899999888764 345788776 11 113578888887653 2222 135
Q ss_pred eeEEEEcCCC
Q 042171 67 FDYAFMDADK 76 (125)
Q Consensus 67 fD~v~id~~~ 76 (125)
+|.||--++.
T Consensus 82 ~d~Vih~A~~ 91 (342)
T PLN02214 82 CDGVFHTASP 91 (342)
T ss_pred CCEEEEecCC
Confidence 8888876653
No 418
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=35.49 E-value=76 Score=29.72 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=36.3
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEE
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFM 72 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~i 72 (125)
++..+||+|||.-+ .+.+.+|++..|+.+| ..+...-++++.|-+.. .+. ...++|.+-+
T Consensus 822 ~~~~~lDLGTGPE~---RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~--~~~----~~~~~D~vta 889 (1289)
T PF06016_consen 822 DPDHWLDLGTGPEC---RILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSD--AWW----NGTPFDAVTA 889 (1289)
T ss_dssp CC-CEEEET--TT----CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSC--CGG----CC---SEEEE
T ss_pred CcceEEEccCCccc---eeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccc--eeE----ecCCCCEEEE
Confidence 57889999998874 4556688899999999 23445688899887643 221 1467888875
No 419
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=35.46 E-value=61 Score=25.52 Aligned_cols=31 Identities=23% Similarity=0.034 Sum_probs=25.0
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
...|+-||+|.+-.++.++.+-. +-+|+-+|
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE 34 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIE 34 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEc
Confidence 56799999999888888776543 67899999
No 420
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=35.45 E-value=1.5e+02 Score=23.20 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=17.0
Q ss_pred EEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 7 KTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+||-+|+| .|...+...-..+ =++++-+|
T Consensus 1 kVlIVGaGGlG~EiaKnLal~G-vg~ItIvD 30 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTG-FGEIHIID 30 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhc-CCeEEEEc
Confidence 47888985 3333332222233 47899999
No 421
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=35.45 E-value=1.8e+02 Score=21.50 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=24.1
Q ss_pred CCceeEEEEcCCCcC-CHHH--Hhhh------CCCCCCcchHHHHHHHHHHhhc
Q 042171 64 EVNFDYAFMDADKDN-YCNY--MREQ------VPDHFRGSSKQAILDLNRSLVD 108 (125)
Q Consensus 64 ~~~fD~v~id~~~~~-~~~~--~~~~------~~~~~~~~~~~~~~~~~~~l~~ 108 (125)
...||+|++|+.... .... +-.. +-..... ....+++..+.+.+
T Consensus 210 ~~~yD~ViiD~pp~~~~~d~~~~~~~~d~vilV~~~~~t-~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 210 MGDYDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNET-RLHELTSLKEHLSG 262 (274)
T ss_pred HhcCCEEEEeCCCcccccHHHHHHHhCCeEEEEEECCCC-CHHHHHHHHHHHHh
Confidence 367999999998643 2221 1111 1122222 55567777777765
No 422
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=35.37 E-value=68 Score=23.86 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=18.9
Q ss_pred EEEEcCcccHHHHHHHhhCCCCCEEEEEeCC
Q 042171 8 TIEIGVFTGYSLFLTALTIPEDGQITAIDAR 38 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~ 38 (125)
++-||+|+|-++++...+-.++.+|.-+|+|
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG 33 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEAGNKKVLVLEAG 33 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTSTTS-EEEEESS
T ss_pred EEEECcCHHHHHHHHHHhhCCCCcEEEEEcc
Confidence 6778998888776544432223589999944
No 423
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=35.21 E-value=1.5e+02 Score=27.20 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCccc---------HHHHHHHhhCCC-CCEEEEEe
Q 042171 3 LKLKKTIEIGVFTG---------YSLFLTALTIPE-DGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G---------~~t~~la~~~~~-~~~v~~iD 36 (125)
...++||-||+|.. |++..+++++.+ +.+|+.++
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~ 48 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVN 48 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEe
Confidence 34679999999975 456666666643 56899999
No 424
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.11 E-value=2.4e+02 Score=22.79 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=45.8
Q ss_pred CCCEEEEEcC---------------cccHHHHHHHhhCC-CCCEEEEEeCC----CCCcEE-EEecchHHHHHHHhhcCC
Q 042171 4 KLKKTIEIGV---------------FTGYSLFLTALTIP-EDGQITAIDAR----VDHKIN-FIESEALSVLDQLLKDSE 62 (125)
Q Consensus 4 ~~~~vLeiG~---------------g~G~~t~~la~~~~-~~~~v~~iD~~----~~~~i~-~~~gd~~~~l~~~~~~~~ 62 (125)
+.++||--|. .+|..+.++|+++- .+++|+.++.. ....+. +-..++.+....+...
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~~~dv~~~~~~~~~v~~~-- 264 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVKRIDVESAQEMLDAVLAA-- 264 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcEEEccCCHHHHHHHHHHh--
Confidence 4567887776 47888888888763 36889888811 111222 2234555554433221
Q ss_pred CCCceeEEEEcCCCcCCHH
Q 042171 63 NEVNFDYAFMDADKDNYCN 81 (125)
Q Consensus 63 ~~~~fD~v~id~~~~~~~~ 81 (125)
-+.+|+++..++...|.+
T Consensus 265 -~~~~DilI~~Aav~d~~~ 282 (399)
T PRK05579 265 -LPQADIFIMAAAVADYRP 282 (399)
T ss_pred -cCCCCEEEEccccccccc
Confidence 256999999888766654
No 425
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=35.05 E-value=97 Score=22.37 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=43.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEeC-------------CCCCcEEEEecchHHH--H----HHHhhcCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAIDA-------------RVDHKINFIESEALSV--L----DQLLKDSE 62 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD~-------------~~~~~i~~~~gd~~~~--l----~~~~~~~~ 62 (125)
.+.+++|-.| |+|..+..+++.+- .+.+|+.++. ....++.++.+|..+. + ..+.+.
T Consensus 10 ~~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~-- 86 (259)
T PRK08213 10 LSGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER-- 86 (259)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH--
Confidence 3457888888 56777777777653 3568888871 1224677888887752 1 111111
Q ss_pred CCCceeEEEEcCCC
Q 042171 63 NEVNFDYAFMDADK 76 (125)
Q Consensus 63 ~~~~fD~v~id~~~ 76 (125)
..++|.|+..+..
T Consensus 87 -~~~id~vi~~ag~ 99 (259)
T PRK08213 87 -FGHVDILVNNAGA 99 (259)
T ss_pred -hCCCCEEEECCCC
Confidence 2568999886653
No 426
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=34.72 E-value=74 Score=26.48 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
....|+-||.| +|.++.+.+....+..+|+-+|
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlE 77 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIE 77 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEe
Confidence 44578999998 7777776554443246899999
No 427
>PRK08328 hypothetical protein; Provisional
Probab=34.67 E-value=73 Score=23.51 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=22.1
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-+||| .|...+...-..+ -++++-+|
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD 58 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLID 58 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 45689999998 4555444444444 48899999
No 428
>PRK14852 hypothetical protein; Provisional
Probab=34.57 E-value=1.9e+02 Score=26.51 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=23.5
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-+||| .|...+...-+.+ =|+++-+|
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraG-VG~I~L~D 363 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTG-IGNFNLAD 363 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcC-CCeEEEEc
Confidence 56789999999 6766555444455 48899999
No 429
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.55 E-value=1.7e+02 Score=20.81 Aligned_cols=72 Identities=7% Similarity=-0.027 Sum_probs=40.6
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeC-----------CCCCcEEEEecchHHH------HHHHhhcCC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDA-----------RVDHKINFIESEALSV------LDQLLKDSE 62 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~-----------~~~~~i~~~~gd~~~~------l~~~~~~~~ 62 (125)
|+.+.+++|-.|.. |..+..+++.+ ..+.+|+.+.. .+..++.++..|..+. +.......
T Consensus 1 ~~l~~k~ilItGas-~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~- 78 (253)
T PRK08642 1 MQISEQTVLVTGGS-RGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHF- 78 (253)
T ss_pred CCCCCCEEEEeCCC-CcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence 66777889988864 44555555554 33567766541 1224677777776431 11111110
Q ss_pred CCCceeEEEEcCC
Q 042171 63 NEVNFDYAFMDAD 75 (125)
Q Consensus 63 ~~~~fD~v~id~~ 75 (125)
..+.|.++..+.
T Consensus 79 -g~~id~li~~ag 90 (253)
T PRK08642 79 -GKPITTVVNNAL 90 (253)
T ss_pred -CCCCeEEEECCC
Confidence 124999998764
No 430
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=34.38 E-value=65 Score=26.11 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=25.6
Q ss_pred CEEEEEc-Cc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 6 KKTIEIG-VF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG-~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
++|.-+| || .|.+++...+..|+.-+|+++=
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLa 34 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALS 34 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEE
Confidence 5788899 87 7999998888888777888874
No 431
>PRK08013 oxidoreductase; Provisional
Probab=34.34 E-value=1.4e+02 Score=23.39 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=23.7
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..|+-||+|..-+++.++.+-. +-+|+-+|
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~-G~~v~viE 33 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGS-GLRVAVLE 33 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhC-CCEEEEEe
Confidence 4689999988877777666543 67899999
No 432
>PRK14851 hypothetical protein; Provisional
Probab=34.03 E-value=2.1e+02 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=24.1
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-+||| .|...+...-+.+ =|+++-+|
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~G-VG~l~LvD 74 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTG-IGRFHIAD 74 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhC-CCeEEEEc
Confidence 46799999998 7776665555555 48899999
No 433
>PLN02748 tRNA dimethylallyltransferase
Probab=33.75 E-value=63 Score=26.84 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=25.3
Q ss_pred CCCCCCEEEEEc-CcccHHHHHHHhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIG-VFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG-~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|..++..|+-+| ||+|-+++.+..+-.-++.|+..|
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~D 54 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINAD 54 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence 344556677777 899999887554433258899999
No 434
>PRK06139 short chain dehydrogenase; Provisional
Probab=33.64 E-value=2.1e+02 Score=22.15 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe-------------CCCCCcEEEEecchHHH--HHHHhhc-CCCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID-------------ARVDHKINFIESEALSV--LDQLLKD-SENEV 65 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD-------------~~~~~~i~~~~gd~~~~--l~~~~~~-~~~~~ 65 (125)
.+.+.||-.|+..| .+..+++.+ ..+.+|+.++ .....++.++..|..+. +..+... ....+
T Consensus 5 l~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 5 LHGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 34568888887544 444444443 3367888887 11223565666665431 1221110 00126
Q ss_pred ceeEEEEcCCC
Q 042171 66 NFDYAFMDADK 76 (125)
Q Consensus 66 ~fD~v~id~~~ 76 (125)
++|.++..+..
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 79999987764
No 435
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=33.63 E-value=2.2e+02 Score=21.75 Aligned_cols=34 Identities=12% Similarity=-0.026 Sum_probs=19.6
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD 36 (125)
|-....+|+-||+ |..+..+|..+.+ +..|+.+.
T Consensus 1 ~~~~~m~I~IiG~--GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 1 MDSETPRIGIIGT--GAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred CCCcCcEEEEECC--CHHHHHHHHHHHHCCCeEEEEE
Confidence 3345568999987 5555555554432 34565555
No 436
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=33.63 E-value=49 Score=26.55 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=20.9
Q ss_pred EEEcCcccHHHHH--HHhhCCCCCEEEEEe
Q 042171 9 IEIGVFTGYSLFL--TALTIPEDGQITAID 36 (125)
Q Consensus 9 LeiG~g~G~~t~~--la~~~~~~~~v~~iD 36 (125)
+-=|||+|-.|+. |+..++++-+|+++|
T Consensus 178 isGGTGSGKTTlLNal~~~i~~~eRvItiE 207 (355)
T COG4962 178 ISGGTGSGKTTLLNALSGFIDSDERVITIE 207 (355)
T ss_pred EeCCCCCCHHHHHHHHHhcCCCcccEEEEe
Confidence 3346999999986 444567677999999
No 437
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=33.50 E-value=93 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=24.3
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||..|+|. |..++.++++.+ .+|++++
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~ 165 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTD 165 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEc
Confidence 456899999885 777888888764 7888887
No 438
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=33.37 E-value=61 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=23.3
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
+||-.| |+|+.+..+++.+-+.++|+++|
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~~~g~V~~~~ 30 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALAPLGNLIALD 30 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhhccCCEEEec
Confidence 577777 57999999998875556898888
No 439
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=33.33 E-value=80 Score=23.53 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=22.1
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-||+| .|...+....+.+ -++++-+|
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD 63 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVD 63 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence 56799999997 4555544444444 47899999
No 440
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=33.24 E-value=93 Score=22.44 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=42.7
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe----------CCCCCcEEEEecchHHH------HHHHhhcCCCC
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID----------ARVDHKINFIESEALSV------LDQLLKDSENE 64 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD----------~~~~~~i~~~~gd~~~~------l~~~~~~~~~~ 64 (125)
..+.+++|-.| ++|..+..+++.+- .+.+|+.++ ..+..++.++..|..+. +..+... .
T Consensus 3 ~l~~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~---~ 78 (257)
T PRK07067 3 RLQGKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVER---F 78 (257)
T ss_pred CCCCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH---c
Confidence 35567888888 45666777777663 356888888 12334677787776432 1112111 2
Q ss_pred CceeEEEEcCC
Q 042171 65 VNFDYAFMDAD 75 (125)
Q Consensus 65 ~~fD~v~id~~ 75 (125)
++.|.++..+.
T Consensus 79 ~~id~li~~ag 89 (257)
T PRK07067 79 GGIDILFNNAA 89 (257)
T ss_pred CCCCEEEECCC
Confidence 56899887654
No 441
>PRK05866 short chain dehydrogenase; Provisional
Probab=33.21 E-value=2.1e+02 Score=21.46 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=40.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeC-------------CCCCcEEEEecchHHH--HHHHhhcC-CCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDA-------------RVDHKINFIESEALSV--LDQLLKDS-ENEV 65 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~-------------~~~~~i~~~~gd~~~~--l~~~~~~~-~~~~ 65 (125)
.+.++||-.|++. ..+..+++.+ ..+.+|+.++- ....++.++..|..+. +..+.+.. ...+
T Consensus 38 ~~~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 38 LTGKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3457788888754 4455555544 33568888880 1123466777776542 12221100 0125
Q ss_pred ceeEEEEcCCC
Q 042171 66 NFDYAFMDADK 76 (125)
Q Consensus 66 ~fD~v~id~~~ 76 (125)
..|.++..+..
T Consensus 117 ~id~li~~AG~ 127 (293)
T PRK05866 117 GVDILINNAGR 127 (293)
T ss_pred CCCEEEECCCC
Confidence 78999987653
No 442
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=33.05 E-value=47 Score=25.11 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=25.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCC-CEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPED-GQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~-~~v~~iD 36 (125)
.|-.+-|-|||.||...-+....++. .+|++.|
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSD 84 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASD 84 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEE
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhccc
Confidence 45678999999999999888766533 5799999
No 443
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=32.98 E-value=85 Score=23.36 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=23.0
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-+||| .|...+....+.+ -++++-+|
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD 55 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLD 55 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEe
Confidence 46789999987 4665555554454 58999999
No 444
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=32.91 E-value=1.3e+02 Score=27.45 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=39.2
Q ss_pred CCCCCEEEEEcCccc---------HHHHHHHhhCCC-CCEEEEEeC---------CCCCcEEEEecchHHHHHHHhhcCC
Q 042171 2 RLKLKKTIEIGVFTG---------YSLFLTALTIPE-DGQITAIDA---------RVDHKINFIESEALSVLDQLLKDSE 62 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G---------~~t~~la~~~~~-~~~v~~iD~---------~~~~~i~~~~gd~~~~l~~~~~~~~ 62 (125)
....++||-||+|.. ||+..+++++.+ +.+++.++. .+.+..-+.--+. +.+..+..
T Consensus 3 ~~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~-~~v~~ii~--- 78 (1050)
T TIGR01369 3 RTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTP-EAVEKIIE--- 78 (1050)
T ss_pred CCCCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCH-HHHHHHHH---
Confidence 345789999999973 455666666643 568999991 2233332222222 23333322
Q ss_pred CCCceeEEEEc
Q 042171 63 NEVNFDYAFMD 73 (125)
Q Consensus 63 ~~~~fD~v~id 73 (125)
...+|.|+.-
T Consensus 79 -~e~~DaIlp~ 88 (1050)
T TIGR01369 79 -KERPDAILPT 88 (1050)
T ss_pred -HhCCCEEEEC
Confidence 3679999863
No 445
>PRK06126 hypothetical protein; Provisional
Probab=32.57 E-value=70 Score=26.40 Aligned_cols=34 Identities=6% Similarity=-0.141 Sum_probs=26.1
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
......|+-||+|.+-.++.++.+-. +-+|+-+|
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viE 37 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRR-GVDSILVE 37 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEe
Confidence 34455899999999888877666543 67899999
No 446
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.45 E-value=1.2e+02 Score=27.73 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCccc---------HHHHHHHhhCC-CCCEEEEEeC---------CCCCcEEEEecchHHHHHHHhhcCCC
Q 042171 3 LKLKKTIEIGVFTG---------YSLFLTALTIP-EDGQITAIDA---------RVDHKINFIESEALSVLDQLLKDSEN 63 (125)
Q Consensus 3 ~~~~~vLeiG~g~G---------~~t~~la~~~~-~~~~v~~iD~---------~~~~~i~~~~gd~~~~l~~~~~~~~~ 63 (125)
...++||-||+|.- ||+..+++++. .+.+++.+|. .+.+.+-+..-+. +.+..+..
T Consensus 5 ~~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~-e~l~~ii~---- 79 (1066)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITP-EFVEKIIE---- 79 (1066)
T ss_pred CCCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCH-HHHHHHHH----
Confidence 34679999999973 45566666664 3578999991 1233333322232 22233322
Q ss_pred CCceeEEEEc
Q 042171 64 EVNFDYAFMD 73 (125)
Q Consensus 64 ~~~fD~v~id 73 (125)
...+|.|+.-
T Consensus 80 ~e~~D~Iip~ 89 (1066)
T PRK05294 80 KERPDAILPT 89 (1066)
T ss_pred HHCcCEEEEC
Confidence 3579999963
No 447
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=32.45 E-value=2e+02 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=21.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..-|+-||.|.+-+++..+.+-. +-+|+.||
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIE 75 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKD-GRRVHVIE 75 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhC-CcEEEEEe
Confidence 34578899987777766555432 56799998
No 448
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=32.44 E-value=93 Score=23.88 Aligned_cols=30 Identities=30% Similarity=0.238 Sum_probs=23.3
Q ss_pred CCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||-+|+|. |..++.+|++.+ .+|++++
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~ 197 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMG--AAVVAID 197 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEc
Confidence 46889899865 777788888874 5788887
No 449
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=31.70 E-value=2.1e+02 Score=22.10 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=24.6
Q ss_pred cEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCH
Q 042171 42 KINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYC 80 (125)
Q Consensus 42 ~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~ 80 (125)
+|=|+..+..+.++.+ ...||+|++|-..-+.+
T Consensus 238 ~igfln~~~e~~l~~y------~~~~Divl~~D~t~~v~ 270 (277)
T TIGR01544 238 KIGYLNDRVDELLEKY------MDSYDIVLVQDETLEVA 270 (277)
T ss_pred EEEecccCHHHHHHHH------HHhCCEEEECCCCchHH
Confidence 4667888888888876 47899999976654444
No 450
>PRK07576 short chain dehydrogenase; Provisional
Probab=31.66 E-value=2.1e+02 Score=20.90 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=40.0
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe-------------CCCCCcEEEEecchHHH------HHHHhhcC
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID-------------ARVDHKINFIESEALSV------LDQLLKDS 61 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD-------------~~~~~~i~~~~gd~~~~------l~~~~~~~ 61 (125)
+.+.+++|-.|. +|..+..+++.+. .+.+|+.++ .....++.++..|..+. +.....+
T Consensus 6 ~~~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~- 83 (264)
T PRK07576 6 DFAGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE- 83 (264)
T ss_pred cCCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH-
Confidence 445578888885 5666666666543 356888888 01123456677766432 1111111
Q ss_pred CCCCceeEEEEcCC
Q 042171 62 ENEVNFDYAFMDAD 75 (125)
Q Consensus 62 ~~~~~fD~v~id~~ 75 (125)
..++|.++..+.
T Consensus 84 --~~~iD~vi~~ag 95 (264)
T PRK07576 84 --FGPIDVLVSGAA 95 (264)
T ss_pred --cCCCCEEEECCC
Confidence 246899987654
No 451
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=31.65 E-value=40 Score=21.97 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=37.4
Q ss_pred EEEEEcCcccHHHHHHHhhCCCCCEEEEEeCCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCCcCCHHHHh
Q 042171 7 KTIEIGVFTGYSLFLTALTIPEDGQITAIDARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADKDNYCNYMR 84 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~~~~~~~~~ 84 (125)
+|| +-||+|.+|-.+++.+.+-.+ +.|+ .+++......+. +... ....+|+|++.-..+.....++
T Consensus 3 kIL-lvCg~G~STSlla~k~k~~~~----e~gi--~~~i~a~~~~e~-~~~~----~~~~~DvIll~PQi~~~~~~i~ 68 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKKTTEYLK----EQGK--DIEVDAITATEG-EKAI----AAAEYDLYLVSPQTKMYFKQFE 68 (104)
T ss_pred EEE-EECCCchHHHHHHHHHHHHHH----HCCC--ceEEEEecHHHH-HHhh----ccCCCCEEEEChHHHHHHHHHH
Confidence 566 679999999988887742111 1233 255555555544 2221 1246999998555444333344
No 452
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=31.49 E-value=1e+02 Score=24.08 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=23.6
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
...|+-||.|..-.++.++.+-. +-+|+-+|
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE 36 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADA-GLSVALVE 36 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCEEEEEe
Confidence 44799999988777777665433 56899999
No 453
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=31.21 E-value=90 Score=22.43 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=21.2
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||-+|||. |...+......+ -++++-+|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD 52 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVD 52 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEec
Confidence 567899999973 444444333343 47899999
No 454
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=31.20 E-value=1.6e+02 Score=23.24 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=34.1
Q ss_pred CCEEEEEcCc--ccHHHHHHHhhCCCCCEEEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEE
Q 042171 5 LKKTIEIGVF--TGYSLFLTALTIPEDGQITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 5 ~~~vLeiG~g--~G~~t~~la~~~~~~~~v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~ 71 (125)
.++||-+|.+ -|.+++.+|+... -.+|+++= .|...-+.....+..+.+... . ...||+||
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~----~-~~~~DvVl 230 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKY----T-GKGVDVVL 230 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhh----c-CCCccEEE
Confidence 3477777765 5566677888875 35555544 333333444444444433221 1 35799987
No 455
>PLN02568 polyamine oxidase
Probab=31.18 E-value=1.3e+02 Score=25.33 Aligned_cols=34 Identities=18% Similarity=0.038 Sum_probs=21.6
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCC------CCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPE------DGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~------~~~v~~iD 36 (125)
|+.+..+|+-||.|.+-.+. |..+.. +-+|+-+|
T Consensus 1 ~~~~~~~v~iiGaG~aGl~a--a~~L~~~g~~~~~~~v~v~E 40 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTA--ANKLYTSSAANDMFELTVVE 40 (539)
T ss_pred CCCCCCcEEEECCCHHHHHH--HHHHHhcccccCCceEEEEe
Confidence 67777899999997654444 333321 24577777
No 456
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=31.04 E-value=88 Score=20.78 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=17.7
Q ss_pred EEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 7 KTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+|+=+||| .|...+...-..+ -++++-+|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEc
Confidence 47888986 4444333333333 36899999
No 457
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=31.01 E-value=83 Score=27.44 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=24.7
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||-+|||+ |...+....+.+ =++++-+|
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~G-Vg~ItlVD 369 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWG-VRHITFVD 369 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcC-CCeEEEEc
Confidence 457899999996 776666555665 48999999
No 458
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=30.87 E-value=3.1e+02 Score=22.69 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=20.4
Q ss_pred CCCEEEEEcC-cc-cHHHHHHHhhC-------CCCCEEEEEe
Q 042171 4 KLKKTIEIGV-FT-GYSLFLTALTI-------PEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~-g~-G~~t~~la~~~-------~~~~~v~~iD 36 (125)
+|-+|.-||+ |. |+..++.+..- +-..+++-+|
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD 140 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE 140 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc
Confidence 5778999999 76 66655533321 1013677777
No 459
>PHA03297 envelope glycoprotein L; Provisional
Probab=30.81 E-value=12 Score=26.44 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.6
Q ss_pred CCCEEEEEcCcccHHH
Q 042171 4 KLKKTIEIGVFTGYSL 19 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t 19 (125)
.|+||||..||+|-.-
T Consensus 39 epkrileascgsgpim 54 (185)
T PHA03297 39 EPKRILEASCGSGPIM 54 (185)
T ss_pred CchhhhhhccCCCccc
Confidence 5889999999999753
No 460
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=30.79 E-value=85 Score=24.98 Aligned_cols=30 Identities=23% Similarity=0.124 Sum_probs=19.9
Q ss_pred EEEEEcCcccHHHHH-HHhhCCCCCEEEEEe
Q 042171 7 KTIEIGVFTGYSLFL-TALTIPEDGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~-la~~~~~~~~v~~iD 36 (125)
+|+-||.|.+-.+.. .++...++.+|+-+|
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~ 32 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYE 32 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEE
Confidence 799999988544433 223333357899999
No 461
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.77 E-value=1.1e+02 Score=21.66 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=42.3
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeC------------CCCCcEEEEecchHHH--HHHHhhc-CCCC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDA------------RVDHKINFIESEALSV--LDQLLKD-SENE 64 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~------------~~~~~i~~~~gd~~~~--l~~~~~~-~~~~ 64 (125)
|..+.++||-.|++ |..+..+++.+ ..+.+|+.++. .-..++.++.+|..+. +..+... ....
T Consensus 1 ~~~~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 1 MRLKGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcCCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56677899999985 55556666555 33568888881 0012577787776642 1111100 0002
Q ss_pred CceeEEEEcCC
Q 042171 65 VNFDYAFMDAD 75 (125)
Q Consensus 65 ~~fD~v~id~~ 75 (125)
+.+|.++..+.
T Consensus 80 ~~id~ii~~ag 90 (238)
T PRK05786 80 NAIDGLVVTVG 90 (238)
T ss_pred CCCCEEEEcCC
Confidence 45788887664
No 462
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=30.66 E-value=1.1e+02 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=22.2
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCC-CCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIP-EDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~v~~iD 36 (125)
..++|+-||.|.|- +.+|+.+. ++.+|+-||
T Consensus 9 ~~~~vVIvGgG~aG--l~~a~~L~~~~~~ItlI~ 40 (424)
T PTZ00318 9 KKPNVVVLGTGWAG--AYFVRNLDPKKYNITVIS 40 (424)
T ss_pred CCCeEEEECCCHHH--HHHHHHhCcCCCeEEEEc
Confidence 45689999997664 44566664 347899999
No 463
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=30.46 E-value=82 Score=25.52 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=25.7
Q ss_pred CCCEEEEEcCcccHHHHH--HHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFL--TALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~--la~~~~~~~~v~~iD 36 (125)
+.-+||-+|-|+|-.+++ +.+.++ .+.|.-+|
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIve 71 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVE 71 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcC-CCceEEec
Confidence 445899999999987765 677787 68888888
No 464
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=30.44 E-value=1.8e+02 Score=21.97 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=19.7
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCE-EEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQ-ITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~-v~~iD 36 (125)
..+||-+|+| .|..++.+|++.+ .+ |++++
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~ 195 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALG--AEDVIGVD 195 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEC
Confidence 4578888763 3445566777764 55 88887
No 465
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=30.23 E-value=1.8e+02 Score=22.41 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=32.5
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEeC---------CCCCcEEEEecchHHHHHH
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAIDA---------RVDHKINFIESEALSVLDQ 56 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD~---------~~~~~i~~~~gd~~~~l~~ 56 (125)
..|+-||.|.+-.++.+..+-. +.+|+-+|. +...+...+...+.+.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~ 64 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLER 64 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHH
Confidence 3689999988777776665543 678999991 1123445555666666544
No 466
>PRK07890 short chain dehydrogenase; Provisional
Probab=30.13 E-value=2.1e+02 Score=20.46 Aligned_cols=75 Identities=15% Similarity=0.007 Sum_probs=42.1
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeC-------------CCCCcEEEEecchHHH--HHHHhhcC-CC
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDA-------------RVDHKINFIESEALSV--LDQLLKDS-EN 63 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~-------------~~~~~i~~~~gd~~~~--l~~~~~~~-~~ 63 (125)
|..+.++||-.|++. ..+..+++.+ ..+.+|+.++. ....++.++..|..+. +..+.... ..
T Consensus 1 ~~l~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 1 MLLKGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CccCCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 445678899888644 4455555544 34678888880 1134577777777532 11111000 01
Q ss_pred CCceeEEEEcCCC
Q 042171 64 EVNFDYAFMDADK 76 (125)
Q Consensus 64 ~~~fD~v~id~~~ 76 (125)
.+..|.|+..+..
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 2568999987754
No 467
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=30.11 E-value=90 Score=24.59 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=21.3
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+||-|||| .|...+...-+.+ -++++-+|
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD 55 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVD 55 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 56789999997 3444443333333 47999999
No 468
>PRK06914 short chain dehydrogenase; Provisional
Probab=29.91 E-value=2.2e+02 Score=20.73 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=39.9
Q ss_pred CCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe---------------CCCCCcEEEEecchHHHH-----HHHhhcCCC
Q 042171 5 LKKTIEIGVFTGYSLFLTALTI-PEDGQITAID---------------ARVDHKINFIESEALSVL-----DQLLKDSEN 63 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD---------------~~~~~~i~~~~gd~~~~l-----~~~~~~~~~ 63 (125)
.+.+|-.|+ +|..+..+++.+ ..+.+|++++ .+...++.++.+|..+.- ....+ .
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~ 78 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK---E 78 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH---h
Confidence 356788885 455566666654 3356888887 122346888888776531 11111 1
Q ss_pred CCceeEEEEcCC
Q 042171 64 EVNFDYAFMDAD 75 (125)
Q Consensus 64 ~~~fD~v~id~~ 75 (125)
-++.|.|+..+.
T Consensus 79 ~~~id~vv~~ag 90 (280)
T PRK06914 79 IGRIDLLVNNAG 90 (280)
T ss_pred cCCeeEEEECCc
Confidence 256899987654
No 469
>PLN02602 lactate dehydrogenase
Probab=29.77 E-value=2.9e+02 Score=21.96 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=21.0
Q ss_pred CEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 6 KKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
.+|.-||+|. |++..+.+..-+-..+++-+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD 69 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVD 69 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 6999999977 655555444333235788888
No 470
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=29.64 E-value=1e+02 Score=24.77 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=22.6
Q ss_pred CCCCCCEEEEEcCcccHHHHHH-HhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLT-ALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~l-a~~~~~~~~v~~iD 36 (125)
|..+.-.|+-||.|++-.+..+ +... +.+|+.+|
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~--G~~v~liE 35 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKL--GKRVAVIE 35 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhC--CCEEEEEe
Confidence 5556668999999974444433 3332 56899999
No 471
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=29.62 E-value=1.1e+02 Score=23.20 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=12.5
Q ss_pred CCEEEEEc-CcccHHHHHH
Q 042171 5 LKKTIEIG-VFTGYSLFLT 22 (125)
Q Consensus 5 ~~~vLeiG-~g~G~~t~~l 22 (125)
+..++=+| +|+|-+|...
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 44566667 8888887753
No 472
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=29.50 E-value=1.2e+02 Score=23.36 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=22.6
Q ss_pred CCCEEEEEcCcc-cHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFT-GYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~v~~iD 36 (125)
...+||-+|+|. |..++.+|++.+ .+|++++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~ 203 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRG--FEVYVLN 203 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEe
Confidence 356888888763 667777888874 5788876
No 473
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=29.48 E-value=1.8e+02 Score=21.91 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=30.1
Q ss_pred CCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe--------------CC--CCCcEEEEecchHH
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTIPEDGQITAID--------------AR--VDHKINFIESEALS 52 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD--------------~~--~~~~i~~~~gd~~~ 52 (125)
.+..|+.+|| |.-|...-...+.+.+++-+| .+ ...+.+++..|..+
T Consensus 81 g~~qvV~LGa--GlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 81 GIRQVVILGA--GLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred CCcEEEEeCC--ccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 4567999999 555555544444356777777 11 23567788877764
No 474
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=29.41 E-value=84 Score=24.77 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=21.6
Q ss_pred CCCEEEEEcCcccHHHHH-HHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVFTGYSLFL-TALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~-la~~~~~~~~v~~iD 36 (125)
+.++|+-||.|.+-.+.. -++....+++|+-++
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~ 35 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFS 35 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeC
Confidence 556899999986544443 222334467888888
No 475
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=29.28 E-value=2.2e+02 Score=20.50 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=41.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe-----------CCCCCcEEEEecchHH--HHHHHhhc-CCCCCce
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAID-----------ARVDHKINFIESEALS--VLDQLLKD-SENEVNF 67 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD-----------~~~~~~i~~~~gd~~~--~l~~~~~~-~~~~~~f 67 (125)
.+.+.+|-.|+ +|..+..+++.+ ..+.+|+.++ .....++..++.|..+ .+..+... ....+..
T Consensus 8 l~~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 86 (253)
T PRK08993 8 LEGKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHI 86 (253)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 44577888886 456666666665 3367888877 1123456777777643 12221110 0012578
Q ss_pred eEEEEcCCC
Q 042171 68 DYAFMDADK 76 (125)
Q Consensus 68 D~v~id~~~ 76 (125)
|.++..+..
T Consensus 87 D~li~~Ag~ 95 (253)
T PRK08993 87 DILVNNAGL 95 (253)
T ss_pred CEEEECCCC
Confidence 999877653
No 476
>PRK09126 hypothetical protein; Provisional
Probab=29.00 E-value=92 Score=24.17 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=23.6
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
-.|+-||+|.+-+++.++.+-. +-+|+-+|
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E 33 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-GLKVTLIE 33 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-CCcEEEEe
Confidence 4689999998888777666543 67899999
No 477
>PRK07190 hypothetical protein; Provisional
Probab=28.82 E-value=1.7e+02 Score=24.13 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|......|+-||+|..-.++.+..+.. +-+|.-+|
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llE 35 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVD 35 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHc-CCCEEEEe
Confidence 566667899999988766666544432 56799999
No 478
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=28.68 E-value=2.5e+02 Score=21.02 Aligned_cols=30 Identities=7% Similarity=-0.164 Sum_probs=23.0
Q ss_pred CCEEEEEc--CcccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIG--VFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG--~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+||-.| .+.|..++.+|++.+ .+|++++
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~ 170 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAA 170 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEe
Confidence 45888888 468888888998864 6788777
No 479
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=28.65 E-value=21 Score=23.46 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=12.1
Q ss_pred EEEEEcCcccHHHHHHHh
Q 042171 7 KTIEIGVFTGYSLFLTAL 24 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~ 24 (125)
-=+|||||-|-.--..-+
T Consensus 5 gNIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 5 GNIDIGCGAGNTMDAAFR 22 (124)
T ss_pred CccccccCCCcchhhhhh
Confidence 347999999976444333
No 480
>PRK07856 short chain dehydrogenase; Provisional
Probab=28.48 E-value=2.2e+02 Score=20.35 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=41.4
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeCC-----CCCcEEEEecchHHH------HHHHhhcCCCCCcee
Q 042171 1 MRLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDAR-----VDHKINFIESEALSV------LDQLLKDSENEVNFD 68 (125)
Q Consensus 1 ~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~~-----~~~~i~~~~gd~~~~------l~~~~~~~~~~~~fD 68 (125)
|..+.+++|-.|++.| .+..+++.+ ..+.+|+.++.. ...++.++..|..+. +....+. .+++|
T Consensus 2 ~~~~~k~~lItGas~g-IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~---~~~id 77 (252)
T PRK07856 2 LDLTGRVVLVTGGTRG-IGAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAIVER---HGRLD 77 (252)
T ss_pred CCCCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHHHHH---cCCCC
Confidence 4556678888886544 444445444 335688888721 224677888876532 2222111 25689
Q ss_pred EEEEcCC
Q 042171 69 YAFMDAD 75 (125)
Q Consensus 69 ~v~id~~ 75 (125)
.++..+.
T Consensus 78 ~vi~~ag 84 (252)
T PRK07856 78 VLVNNAG 84 (252)
T ss_pred EEEECCC
Confidence 9998664
No 481
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.48 E-value=2.8e+02 Score=22.59 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=11.9
Q ss_pred CEEEEEc-CcccHHHHH
Q 042171 6 KKTIEIG-VFTGYSLFL 21 (125)
Q Consensus 6 ~~vLeiG-~g~G~~t~~ 21 (125)
..++=+| +|+|-+|..
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 4567778 899988765
No 482
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.38 E-value=82 Score=23.56 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
..+++||-+|.+ .++.+.|..+.+..+|+.+|
T Consensus 43 ~E~~~vli~G~Y--ltG~~~a~~Ls~~~~vtv~D 74 (254)
T COG4017 43 EEFKEVLIFGVY--LTGNYTAQMLSKADKVTVVD 74 (254)
T ss_pred cCcceEEEEEee--ehhHHHHHHhcccceEEEec
Confidence 357899999986 34455566666578999999
No 483
>PRK06475 salicylate hydroxylase; Provisional
Probab=27.93 E-value=87 Score=24.61 Aligned_cols=30 Identities=13% Similarity=-0.023 Sum_probs=23.6
Q ss_pred CEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 6 KKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
++|+-||+|.+-.++.++.+-. +-+|+-+|
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E 32 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIE 32 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEe
Confidence 6799999998887777666543 67899999
No 484
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=27.86 E-value=90 Score=21.32 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=31.4
Q ss_pred cccHHHHH--HHhhCC-CCCEEEEEeCCCCC-cEEE-Eec-chHHHHHHHhhcCCCCCceeEEEEcCCCcCC
Q 042171 14 FTGYSLFL--TALTIP-EDGQITAIDARVDH-KINF-IES-EALSVLDQLLKDSENEVNFDYAFMDADKDNY 79 (125)
Q Consensus 14 g~G~~t~~--la~~~~-~~~~v~~iD~~~~~-~i~~-~~g-d~~~~l~~~~~~~~~~~~fD~v~id~~~~~~ 79 (125)
|.|-+|+. ||..+. .+-+|.-+|...+. .+.. ..+ .....+..+.... ....||+|++|......
T Consensus 10 G~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~-~~~~yD~VIiD~pp~~~ 80 (169)
T cd02037 10 GVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDV-DWGELDYLVIDMPPGTG 80 (169)
T ss_pred cCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHh-hcCCCCEEEEeCCCCCc
Confidence 55666544 455443 25689999933221 1110 011 1111222221110 12579999999987654
No 485
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.49 E-value=1.3e+02 Score=23.34 Aligned_cols=55 Identities=11% Similarity=-0.045 Sum_probs=36.9
Q ss_pred EEEEcCcccHHHHHHHhhCCCCCE-EEEEe----------CCCCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEc
Q 042171 8 TIEIGVFTGYSLFLTALTIPEDGQ-ITAID----------ARVDHKINFIESEALSVLDQLLKDSENEVNFDYAFMD 73 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~~~~~-v~~iD----------~~~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id 73 (125)
|+|+-||.|-.++-+-++ +.+ +.++| ..+.+ .++.+|..+.-+.- ...+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~~--~~~~~Di~~~~~~~------~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFGN--KVPFGDITKISPSD------IPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCCC--CCCccChhhhhhhh------CCCcCEEEec
Confidence 589999999999888765 455 56788 23433 45678887764321 2458988753
No 486
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=27.14 E-value=2.9e+02 Score=21.25 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=21.9
Q ss_pred CCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
.++||-.|+| .|..++.+|++.+ -.++++++
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~ 218 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVD 218 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4678777764 3777777888875 23688887
No 487
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=27.05 E-value=1.1e+02 Score=23.54 Aligned_cols=28 Identities=18% Similarity=0.021 Sum_probs=22.1
Q ss_pred EEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 8 TIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 8 vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
|+-||.|.+-+++.++.+-. +-+|+-+|
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-G~~v~v~E 29 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-GLKIALIE 29 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-CCEEEEEe
Confidence 77899988887777666544 67899999
No 488
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.87 E-value=1.2e+02 Score=17.94 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEEcCcccHHHHHHHhhCCC-CCEEEEEe
Q 042171 7 KTIEIGVFTGYSLFLTALTIPE-DGQITAID 36 (125)
Q Consensus 7 ~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD 36 (125)
+|+-||. |+.++-+|..+.. +.+|+-++
T Consensus 1 ~vvViGg--G~ig~E~A~~l~~~g~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIGG--GFIGIELAEALAELGKEVTLIE 29 (80)
T ss_dssp EEEEESS--SHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEECc--CHHHHHHHHHHHHhCcEEEEEe
Confidence 4666666 8888888887642 45888888
No 489
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=26.81 E-value=96 Score=21.58 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=22.5
Q ss_pred CCCCEEEEEc-CcccHHHHHHHhhCCCCCEEEEEe
Q 042171 3 LKLKKTIEIG-VFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG-~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
.+..+|+=+| .|+|-+|+.-..+-.-+..++..|
T Consensus 2 ~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 4467899999 999999987443311135566665
No 490
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=26.75 E-value=2.4e+02 Score=20.05 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=41.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeCC----CCCcEEEEecchHHH------HHHHhhcCCCCCceeEEE
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDAR----VDHKINFIESEALSV------LDQLLKDSENEVNFDYAF 71 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~~----~~~~i~~~~gd~~~~------l~~~~~~~~~~~~fD~v~ 71 (125)
.+.+++|-.|.+ |..+..+++.+ ..+.+|+.++.. ...++.++..|..+. +....+ ...++|+++
T Consensus 6 ~~~k~vlItGas-~~iG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~id~vi 81 (252)
T PRK08220 6 FSGKTVWVTGAA-QGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLA---ETGPLDVLV 81 (252)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHH---HcCCCCEEE
Confidence 345678877764 45566666655 346789998821 234677787776532 122111 125689998
Q ss_pred EcCCC
Q 042171 72 MDADK 76 (125)
Q Consensus 72 id~~~ 76 (125)
..+..
T Consensus 82 ~~ag~ 86 (252)
T PRK08220 82 NAAGI 86 (252)
T ss_pred ECCCc
Confidence 76553
No 491
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=26.73 E-value=1.4e+02 Score=23.60 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=18.8
Q ss_pred CCCEEEEEcCcccHHHHHHHhhC
Q 042171 4 KLKKTIEIGVFTGYSLFLTALTI 26 (125)
Q Consensus 4 ~~~~vLeiG~g~G~~t~~la~~~ 26 (125)
+..+||-||-|-|.=-..+|..+
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~ 108 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAF 108 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHH
Confidence 45799999999988777777766
No 492
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=26.48 E-value=1.7e+02 Score=18.39 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=36.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhh-CCCCCEEEEEeCC---CCCcEEEEecchHHHHHHHhhcCCCCCceeEEEEcCCC
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALT-IPEDGQITAIDAR---VDHKINFIESEALSVLDQLLKDSENEVNFDYAFMDADK 76 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~-~~~~~~v~~iD~~---~~~~i~~~~gd~~~~l~~~~~~~~~~~~fD~v~id~~~ 76 (125)
.+.++||-||. |-.+..=++. +..+++|+-+... ..+++++......+. -..+|+||+....
T Consensus 5 l~~~~vlVvGg--G~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~----------l~~~~lV~~at~d 70 (103)
T PF13241_consen 5 LKGKRVLVVGG--GPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEED----------LDGADLVFAATDD 70 (103)
T ss_dssp -TT-EEEEEEE--SHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGG----------CTTESEEEE-SS-
T ss_pred cCCCEEEEECC--CHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHH----------HhhheEEEecCCC
Confidence 46789999998 5555544443 4556888888822 246677776655322 2458999975543
No 493
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=26.42 E-value=1.3e+02 Score=24.58 Aligned_cols=31 Identities=13% Similarity=-0.083 Sum_probs=23.8
Q ss_pred CCEEEEEcCcccHHHHHHHhhCCCCCEEEEEe
Q 042171 5 LKKTIEIGVFTGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 5 ~~~vLeiG~g~G~~t~~la~~~~~~~~v~~iD 36 (125)
.-.|+-||.|.+-+++.++.+-. +.+|+-+|
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~-G~~VlllE 69 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKG-GIETFLIE 69 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEe
Confidence 34799999999888877555433 67899999
No 494
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=26.24 E-value=2.2e+02 Score=22.20 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=20.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHhhCCC-CCEEEEEe
Q 042171 3 LKLKKTIEIGVFTGYSLFLTALTIPE-DGQITAID 36 (125)
Q Consensus 3 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~v~~iD 36 (125)
.+.++||=||+|. .+..+++++.+ +.+++.+|
T Consensus 10 ~~~~~ilIiG~g~--~~~~~~~a~~~~G~~v~~~~ 42 (395)
T PRK09288 10 PSATRVMLLGSGE--LGKEVAIEAQRLGVEVIAVD 42 (395)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEe
Confidence 3456899999874 44444444332 45899999
No 495
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=26.13 E-value=2.5e+02 Score=20.09 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=12.3
Q ss_pred CceeEEEEcCCCcCCH
Q 042171 65 VNFDYAFMDADKDNYC 80 (125)
Q Consensus 65 ~~fD~v~id~~~~~~~ 80 (125)
..||+|++|.......
T Consensus 107 ~~yD~VIiD~p~~~~~ 122 (251)
T TIGR01969 107 DDTDFLLIDAPAGLER 122 (251)
T ss_pred hhCCEEEEeCCCccCH
Confidence 5699999998875443
No 496
>PRK09291 short chain dehydrogenase; Provisional
Probab=26.09 E-value=2.5e+02 Score=20.03 Aligned_cols=65 Identities=15% Similarity=0.001 Sum_probs=39.1
Q ss_pred CEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeC-------------CCCCcEEEEecchHHH--HHHHhhcCCCCCceeE
Q 042171 6 KKTIEIGVFTGYSLFLTALTI-PEDGQITAIDA-------------RVDHKINFIESEALSV--LDQLLKDSENEVNFDY 69 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~-------------~~~~~i~~~~gd~~~~--l~~~~~~~~~~~~fD~ 69 (125)
++||-.|+. |..+..+++.+ ..+.+|+++.. ....++.++.+|..+. +.... ....|.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-----~~~id~ 76 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAA-----EWDVDV 76 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHh-----cCCCCE
Confidence 468888874 55566666654 23568888761 1123577777777653 12211 247999
Q ss_pred EEEcCCC
Q 042171 70 AFMDADK 76 (125)
Q Consensus 70 v~id~~~ 76 (125)
|+..+..
T Consensus 77 vi~~ag~ 83 (257)
T PRK09291 77 LLNNAGI 83 (257)
T ss_pred EEECCCc
Confidence 9987653
No 497
>PRK06153 hypothetical protein; Provisional
Probab=25.98 E-value=1.1e+02 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=23.0
Q ss_pred CCCEEEEEcCc-ccHHHHHHHhhCCCCCEEEEEe
Q 042171 4 KLKKTIEIGVF-TGYSLFLTALTIPEDGQITAID 36 (125)
Q Consensus 4 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~v~~iD 36 (125)
+..+|+-|||| +|...+.+.-+.+ -++++-+|
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD 207 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFD 207 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEEC
Confidence 45789999986 5555555444555 58999999
No 498
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=25.74 E-value=2.5e+02 Score=20.05 Aligned_cols=71 Identities=17% Similarity=0.058 Sum_probs=41.0
Q ss_pred CCCCCEEEEEcCcccHHHHHHHhhC-CCCCEEEEEeC-------------CCCCcEEEEecchHHH------HHHHhhcC
Q 042171 2 RLKLKKTIEIGVFTGYSLFLTALTI-PEDGQITAIDA-------------RVDHKINFIESEALSV------LDQLLKDS 61 (125)
Q Consensus 2 ~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD~-------------~~~~~i~~~~gd~~~~------l~~~~~~~ 61 (125)
+.+.+.+|-.|.+ |..+..+++++ ..+.+|+.++. ....++..+..|..+. +..+..
T Consensus 6 ~l~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-- 82 (254)
T PRK08085 6 SLAGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK-- 82 (254)
T ss_pred cCCCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH--
Confidence 4466788988855 44555555554 33568888881 1123566666665432 122211
Q ss_pred CCCCceeEEEEcCCC
Q 042171 62 ENEVNFDYAFMDADK 76 (125)
Q Consensus 62 ~~~~~fD~v~id~~~ 76 (125)
..+++|.++..+..
T Consensus 83 -~~~~id~vi~~ag~ 96 (254)
T PRK08085 83 -DIGPIDVLINNAGI 96 (254)
T ss_pred -hcCCCCEEEECCCc
Confidence 13579999987753
No 499
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=25.73 E-value=1.3e+02 Score=23.69 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=20.2
Q ss_pred CEEEEEcCc-ccHHHHH-HHhhCCCCCEEEEEe
Q 042171 6 KKTIEIGVF-TGYSLFL-TALTIPEDGQITAID 36 (125)
Q Consensus 6 ~~vLeiG~g-~G~~t~~-la~~~~~~~~v~~iD 36 (125)
.+|+-||.| +|.++.+ |++. +.+|+.+|
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~---g~~V~vle 31 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR---GYQVTVFD 31 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCeEEEEe
Confidence 379999998 6666654 4432 56899999
No 500
>PRK08267 short chain dehydrogenase; Provisional
Probab=25.68 E-value=2.6e+02 Score=20.10 Aligned_cols=71 Identities=21% Similarity=0.056 Sum_probs=40.5
Q ss_pred CEEEEEcCcccHHHHHHHhhC-CCCCEEEEEe---C-------CC-CCcEEEEecchHHH--HHHHhhcC-CC-CCceeE
Q 042171 6 KKTIEIGVFTGYSLFLTALTI-PEDGQITAID---A-------RV-DHKINFIESEALSV--LDQLLKDS-EN-EVNFDY 69 (125)
Q Consensus 6 ~~vLeiG~g~G~~t~~la~~~-~~~~~v~~iD---~-------~~-~~~i~~~~gd~~~~--l~~~~~~~-~~-~~~fD~ 69 (125)
+++|-+|+. |..+..+++.+ ..+.+|+.++ . .+ ..++.+++.|..+. +..+.... .. .+++|.
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 467877765 55666666654 3356888888 1 11 24678888877652 11111100 00 257899
Q ss_pred EEEcCCCc
Q 042171 70 AFMDADKD 77 (125)
Q Consensus 70 v~id~~~~ 77 (125)
|+..+...
T Consensus 81 vi~~ag~~ 88 (260)
T PRK08267 81 LFNNAGIL 88 (260)
T ss_pred EEECCCCC
Confidence 99876643
Done!