BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042173
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q44|A Chain A, Crystal Structure Of An Arabidopsis Thaliana Putative
Steroid Sulfotransferase
pdb|2Q3M|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of An
Arabidopsis Thaliana Putative Steroid Sulphotransferase
Length = 326
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 16/148 (10%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDLEPSR--IDEAFERACCG 62
TH SLP S+ +S+C IVY NP D F++ W F +L E + I++A E C G
Sbjct: 139 THISHLSLPESVKSSSCKIVYCCRNPKDMFVSLWHFGKKLAPEETADYPIEKAVEAFCEG 198
Query: 63 IQSFGPIWEHYFLFF----------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
GP W+H ++ +F+ YE+ K+ +KR+A+FL C F
Sbjct: 199 KFIGGPFWDHILEYWYASRENPNKVLFVTYEELKKQTEVEMKRIAEFLECGFI----EEE 254
Query: 113 VIGEISKLCSFDNIKGLEATKFGKQPDG 140
+ EI KLCSF+++ LE K GK P+G
Sbjct: 255 EVREIVKLCSFESLSNLEVNKEGKLPNG 282
>pdb|2AD1|A Chain A, Human Sulfotransferase Sult1c2
pdb|2GWH|A Chain A, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
pdb|2GWH|B Chain B, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
Length = 298
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERACCGI 63
TH PF LP S+L NC I+Y+ NP D ++ + F + L P +E FE G
Sbjct: 110 THLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGK 169
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
+G EH ++ ++L YED K++ +++LA+F+G + V+
Sbjct: 170 VCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLD-----DKVLD 224
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+I SFD +K + P + S+
Sbjct: 225 KIVHYTSFDVMKQNPMANYSSIPAEIMDHSI 255
>pdb|2QP4|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFIT------DWQFIPRLRDLEPSRIDEA 55
F +H P P S +S ++YL NP D ++ +W+FI + P +E
Sbjct: 94 LFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNWKFIKK-----PKSWEEY 148
Query: 56 FERACCGIQSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEG 107
FE C G +G ++H + F+ L YE+ K+D ++++ FLG + E
Sbjct: 149 FEWFCQGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTL-EP 207
Query: 108 EEANGVIGEISKLCSFDNIKGLEATKFG 135
EE N ++ K SF ++K + + +
Sbjct: 208 EELNLIL----KNSSFQSMKENKMSNYS 231
>pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepiandrosterone
Sulfotransferase In Complex With Substrate
Length = 293
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERAC 60
F +H P P S +S ++YL NP D ++ + F ++ L +P +E FE C
Sbjct: 103 LFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFLKKPKSWEEYFEWFC 162
Query: 61 CGIQSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
G +G ++H + F+ L YE+ K+D ++++ FLG + E EE N
Sbjct: 163 QGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTL-EPEELNL 221
Query: 113 VIGEISKLCSFDNIKGLEATKFG 135
++ K SF ++K + + +
Sbjct: 222 IL----KNSSFQSMKENKMSNYS 240
>pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERAC 60
F +H P P S +S ++YL NP D ++ + F ++ + +P +E FE C
Sbjct: 95 LFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFIKKPKSWEEYFEWFC 154
Query: 61 CGIQSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
G +G ++H + F+ L YE+ K+D ++++ FLG + E EE N
Sbjct: 155 QGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTL-EPEELNL 213
Query: 113 VIGEISKLCSFDNIK 127
++ K SF ++K
Sbjct: 214 IL----KNSSFQSMK 224
>pdb|3F3Y|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|C Chain C, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|D Chain D, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
Length = 285
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERAC 60
F +H P P S +S ++YL NP D ++ + F ++ + +P +E FE C
Sbjct: 95 LFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFIKKPKSWEEYFEWFC 154
Query: 61 CGIQSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
G +G ++H + F+ L YE+ K+D ++++ FLG + E EE N
Sbjct: 155 QGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTL-EPEELNL 213
Query: 113 VIGEISKLCSFDNIK 127
++ K SF ++K
Sbjct: 214 IL----KNSSFQSMK 224
>pdb|4IFB|A Chain A, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
pdb|4IFB|B Chain B, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
Length = 285
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERAC 60
F +H P P S +S ++YL NP D ++ + F ++ + +P +E FE C
Sbjct: 95 LFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFIKKPKSWEEYFEWFC 154
Query: 61 CGIQSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
G +G ++H + F+ L YE+ K+D ++++ FLG + E EE N
Sbjct: 155 QGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTL-EPEELNL 213
Query: 113 VIGEISKLCSFDNIK 127
++ K SF ++K
Sbjct: 214 IL----KNSSFQSMK 224
>pdb|1OV4|A Chain A, Crystal Structure Of Human Dhea-st Complexed With
Androsterone
Length = 293
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERAC 60
F +H P P S +S ++YL NP D ++ + F ++ + +P +E FE C
Sbjct: 103 LFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFIKKPKSWEEYFEWFC 162
Query: 61 CGIQSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
G +G ++H + F+ L YE+ K+D ++++ FLG + E EE N
Sbjct: 163 QGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTL-EPEELNL 221
Query: 113 VIGEISKLCSFDNIKGLEATKFG 135
++ K SF ++K + + +
Sbjct: 222 IL----KNSSFQSMKENKMSNYS 240
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERAC 60
F +H P P S +S ++YL NP D ++ + F ++ + +P +E FE C
Sbjct: 94 LFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNIKFIKKPKSWEEYFEWFC 153
Query: 61 CGIQSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
G +G ++H + F+ L YE+ K+D ++++ FLG + E EE N
Sbjct: 154 QGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTL-EPEELNL 212
Query: 113 VIGEISKLCSFDNIKGLEATKFG 135
++ K SF ++K + + +
Sbjct: 213 IL----KNSSFQSMKENKMSNYS 231
>pdb|1ZD1|A Chain A, Human Sulfortransferase Sult4a1
pdb|1ZD1|B Chain B, Human Sulfortransferase Sult4a1
Length = 284
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDLEPSRIDEAFERACCGIQ 64
+H P+ LP + + ++Y+ NP D ++ +QF LR + + F R +
Sbjct: 110 SHLPYRFLPSDLHNGDSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDK 169
Query: 65 -SFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCS 103
+G +EH F+ +FLKYED RDL V++LA FLG S
Sbjct: 170 LGYGSWFEHVQEFWEHRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVS 217
>pdb|2REO|A Chain A, Crystal Structure Of Human Sulfotransferase 1c3 (Sult1c3)
In Complex With Pap
Length = 305
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL--EPSRIDEAFERACCG 62
TH P +P SI NC IVY+ NP D ++ + F R+ +P ++E +E+ G
Sbjct: 117 THLPSHLIPPSIWKENCKIVYVARNPKDCLVSYYHF-HRMASFMPDPQNLEEFYEKFMSG 175
Query: 63 IQSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVI 114
G ++H ++ ++L YED K+D ++++ FL SE ++
Sbjct: 176 KVVGGSWFDHVKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISE-----EIL 230
Query: 115 GEISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+I SFD +K T + P + S+
Sbjct: 231 NKIIYHTSFDVMKQNPMTNYTTLPTSIMDHSI 262
>pdb|2H8K|A Chain A, Human Sulfotranferase Sult1c3 In Complex With Pap
pdb|2H8K|B Chain B, Human Sulfotranferase Sult1c3 In Complex With Pap
Length = 306
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL--EPSRIDEAFERACCG 62
TH P +P SI NC IVY+ NP D ++ + F R+ +P ++E +E+ G
Sbjct: 118 THLPSHLIPPSIWKENCKIVYVARNPKDCLVSYYHF-HRMASFMPDPQNLEEFYEKFMSG 176
Query: 63 IQSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVI 114
G ++H ++ ++L YED K+D ++++ FL SE ++
Sbjct: 177 KVVGGSWFDHVKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISE-----EIL 231
Query: 115 GEISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+I SFD +K T + P + S+
Sbjct: 232 NKIIYHTSFDVMKQNPMTNYTTLPTSIMDHSI 263
>pdb|1FMJ|A Chain A, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FMJ|B Chain B, Crystal Structure Of Mercury Derivative Of Retinol
Dehydratase In A Complex With Retinol And Pap
pdb|1FML|A Chain A, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
pdb|1FML|B Chain B, Crystal Structure Of Retinol Dehydratase In A Complex With
Retinol And Pap
Length = 351
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERAC 60
F TH P + +P ++L + +VYL +P D ++ + L L + S + +E
Sbjct: 160 FVKTHLPLSLMPPNMLDT-VKMVYLARDPRDVAVSSFHHARLLYLLNKQSNFKDFWEMFH 218
Query: 61 CGIQSFGPIWEH--------YFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
G+ + P +EH + +FL YED +DL C+ R+ADFLG SE
Sbjct: 219 RGLYTLTPYFEHVKEAWAKRHDPNMLFLFYEDYLKDLPGCIARIADFLGKKLSE------ 272
Query: 113 VIGEISKLCSFDN 125
+I +LC N
Sbjct: 273 --EQIQRLCEHLN 283
>pdb|1AQU|A Chain A, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
And 17-Beta Estradiol
pdb|1AQU|B Chain B, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
And 17-Beta Estradiol
pdb|1AQY|A Chain A, Estrogen Sulfotransferase With Pap
pdb|1AQY|B Chain B, Estrogen Sulfotransferase With Pap
pdb|1BO6|A Chain A, Estrogen Sulfotransferase With Inactive Cofactor Pap And
Vanadate
pdb|1BO6|B Chain B, Estrogen Sulfotransferase With Inactive Cofactor Pap And
Vanadate
Length = 297
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERACCGI 63
TH P LP S NC ++YL N D ++ + F+ + P E E+ G
Sbjct: 109 THLPPKLLPASFWEKNCKMIYLCRNAKDVAVSYYYFLLMITSYPNPKSFSEFVEKFMQGQ 168
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
+G ++H ++ +F+ YED K D+ V +L +FL E + + ++
Sbjct: 169 VPYGSWYDHVKAWWEKSKNSRVLFMFYEDMKEDIRREVVKLIEFL-----ERKPSAELVD 223
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRN 143
I + SF +K +T + P+ N
Sbjct: 224 RIIQHTSFQEMKNNPSTNYTMMPEEMMN 251
>pdb|1CJM|A Chain A, Human Sult1a3 With Sulfate Bound
pdb|2A3R|A Chain A, Crystal Structure Of Human Sulfotransferase Sult1a3 In
Complex With Dopamine And 3-Phosphoadenosine 5-Phosphate
pdb|2A3R|B Chain B, Crystal Structure Of Human Sulfotransferase Sult1a3 In
Complex With Dopamine And 3-Phosphoadenosine 5-Phosphate
Length = 295
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL--EPSRIDEAFERACCG 62
+H P A LP ++L +VY+ NP D ++ + F R+ EP D E+ G
Sbjct: 107 SHLPLALLPQTLLDQKVKVVYVARNPKDVAVSYYHFH-RMEKAHPEPGTWDSFLEKFMAG 165
Query: 63 IQSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVI 114
S+G ++H ++ ++L YED K + ++++ +F+G S E +
Sbjct: 166 EVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPE-----ETM 220
Query: 115 GEISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+ + SF +K T + P + S+
Sbjct: 221 DFMVQHTSFKEMKKNPMTNYTTVPQELMDHSI 252
>pdb|1Z28|A Chain A, Crystal Structures Of Sult1a2 And Sult1a13: Implications
In The Bioactivation Of N-Hydroxy-2-Acetylamino Fluorine
(Oh-Aaf)
Length = 295
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLR-DLEPSRIDEAFERACCGI 63
TH P A LP ++L +VY+ N D ++ + F + EP D E+ G
Sbjct: 107 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPEPGTWDSFLEKFMVGE 166
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
S+G ++H ++ ++L YED K + ++++ +F+G S E E + V+
Sbjct: 167 VSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPE-ETVDFVVQ 225
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
SF +K T + P + S+
Sbjct: 226 H----TSFKEMKKNPMTNYTTVPQEFMDHSI 252
>pdb|1X8J|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8J|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Androsterone And Inactive Cofactor Pap
pdb|1X8K|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8K|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
Anhydroretinol And Inactive Cofactor Pap
pdb|1X8L|A Chain A, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
pdb|1X8L|B Chain B, Crystal Structure Of Retinol Dehydratase In Complex With
All-Trans-4-Oxoretinol And Inactive Cofactor Pap
Length = 351
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 2 FFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERAC 60
F TH P + +P ++L + +VYL +P D ++ + L L + S + +E
Sbjct: 160 FVKTHLPLSLMPPNMLDT-VKMVYLARDPRDVAVSSFHHARLLYLLNKQSNFKDFWEMFH 218
Query: 61 CGIQSFGPIWEH--------YFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANG 112
G+ + P +EH + +FL YED +DL + R+ADFLG SE +
Sbjct: 219 RGLYTLTPYFEHVKEAWAKRHDPNMLFLFYEDYLKDLPGSIARIADFLGKKLSEEQ---- 274
Query: 113 VIGEISKLCSFDNIKG 128
I +S+ +F+ K
Sbjct: 275 -IQRLSEHLNFEKFKN 289
>pdb|1LS6|A Chain A, Human Sult1a1 Complexed With Pap And P-Nitrophenol
pdb|2D06|A Chain A, Human Sult1a1 Complexed With Pap And Estradiol
pdb|2D06|B Chain B, Human Sult1a1 Complexed With Pap And Estradiol
Length = 295
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLR-DLEPSRIDEAFERACCGI 63
TH P A LP ++L +VY+ N D ++ + F + EP D E+ G
Sbjct: 107 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPEPGTWDSFLEKFMVGE 166
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
S+G ++H ++ ++L YED K + ++++ +F+G S E +
Sbjct: 167 VSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLPE-----ETVD 221
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+ + SF +K T + P + S+
Sbjct: 222 FMVQHTSFKEMKKNPMTNYTTVPQEFMDHSI 252
>pdb|3U3J|A Chain A, Crystal Structure Of Hsult1a1 Bound To Pap
pdb|3U3J|B Chain B, Crystal Structure Of Hsult1a1 Bound To Pap
Length = 314
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLR-DLEPSRIDEAFERACCGI 63
TH P A LP ++L +VY+ N D ++ + F + EP D E+ G
Sbjct: 127 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPEPGTWDSFLEKFMVGE 186
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
S+G ++H ++ ++L YED K + ++++ +F+G S E +
Sbjct: 187 VSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLPE-----ETVD 241
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+ + SF +K T + P + S+
Sbjct: 242 FMVQHTSFKEMKKNPMTNYTTVPQEFMDHSI 272
>pdb|3U3K|A Chain A, Crystal Structure Of Hsult1a1 Bound To Pap And 2-Naphtol
pdb|3U3K|B Chain B, Crystal Structure Of Hsult1a1 Bound To Pap And 2-Naphtol
pdb|3U3M|A Chain A, Crystal Structure Of Human Sult1a1 Bound To Pap And
3-Cyano-7- Hydroxycoumarin
pdb|3U3O|A Chain A, Crystal Structure Of Human Sult1a1 Bound To Pap And Two
3-Cyano-7- Hydroxycoumarin
Length = 315
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLR-DLEPSRIDEAFERACCGI 63
TH P A LP ++L +VY+ N D ++ + F + EP D E+ G
Sbjct: 127 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPEPGTWDSFLEKFMVGE 186
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
S+G ++H ++ ++L YED K + ++++ +F+G S E +
Sbjct: 187 VSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLPE-----ETVD 241
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+ + SF +K T + P + S+
Sbjct: 242 FMVQHTSFKEMKKNPMTNYTTVPQEFMDHSI 272
>pdb|3U3R|A Chain A, Crystal Structure Of D249g Mutated Human Sult1a1 Bound To
Pap And P- Nitrophenol
Length = 315
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLR-DLEPSRIDEAFERACCGI 63
TH P A LP ++L +VY+ N D ++ + F + EP D E+ G
Sbjct: 127 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPEPGTWDSFLEKFMVGE 186
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSE 106
S+G ++H ++ ++L YED K + ++++ +F+G S E
Sbjct: 187 VSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLPE 237
>pdb|4GRA|A Chain A, Crystal Structure Of Sult1a1 Bound With Pap
pdb|4GRA|B Chain B, Crystal Structure Of Sult1a1 Bound With Pap
Length = 299
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLR-DLEPSRIDEAFERACCGI 63
TH P A LP ++L +VY+ N D ++ + F + EP D E+ G
Sbjct: 111 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPEPGTWDSFLEKFMVGE 170
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
S+G ++H ++ ++L YED K + ++++ +F+G S E +
Sbjct: 171 VSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPE-----ETVD 225
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+ + SF +K T + P + S+
Sbjct: 226 FMVQHTSFKEMKKNPMTNYTTVPQEFMDHSI 256
>pdb|2ZPT|X Chain X, Crystal Structure Of Mouse Sulfotransferase Sult1d1
Complex With Pap
pdb|2ZVP|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And P-Nitrophenol
pdb|2ZVQ|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And Alpha-naphthol
pdb|2ZYT|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Paps
pdb|2ZYU|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Paps And P-Nitrophenyl Sulfate
pdb|2ZYV|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With PapsPAP AND P-Nitrophenol
pdb|2ZYW|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And P-Nitrophenol, Obtained By
Two-Step Soaking Method
Length = 295
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLR-DLEPSRIDEAFERACCGI 63
TH P LP S ++C I+Y+ N D ++ + F + EP +E E+ G
Sbjct: 107 THLPVQLLPSSFWKNDCKIIYVARNAKDVVVSYYYFYQMAKIHPEPGTWEEFLEKFMAGQ 166
Query: 64 QSFGPIWEH----------YFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSE 106
SFGP ++H Y + ++F YED K + ++++ FL E
Sbjct: 167 VSFGPWYDHVKSWWEKRKEYRILYLF--YEDMKENPKCEIQKILKFLEKDIPE 217
>pdb|3BFX|A Chain A, Crystal Structure Of Human Sulfotransferase Sult1c1 In
Complex With Pap
pdb|3BFX|B Chain B, Crystal Structure Of Human Sulfotransferase Sult1c1 In
Complex With Pap
Length = 296
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL--EPSRIDEAFERACCG 62
TH LP S +NC +Y+ N D ++ + F R+ + +P +E FE G
Sbjct: 108 THLSTQLLPPSFWENNCKFLYVARNAKDCMVSYYHF-QRMNHMLPDPGTWEEYFETFING 166
Query: 63 IQSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVI 114
+G ++H ++ +FL YED KRD ++++ F+G E V+
Sbjct: 167 KVVWGSWFDHVKGWWEMKDRHQILFLFYEDIKRDPKHEIRKVMQFMGKKVDE-----TVL 221
Query: 115 GEISKLCSFDNIK 127
+I + SF+ +K
Sbjct: 222 DKIVQETSFEKMK 234
>pdb|3QVU|A Chain A, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And P-Nitrophenol
pdb|3QVU|B Chain B, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And P-Nitrophenol
pdb|3QVV|A Chain A, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And 3-Cyc
pdb|3QVV|B Chain B, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And 3-Cyc
Length = 295
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLR-DLEPSRIDEAFERACCGI 63
TH P A LP ++L +VY+ N D ++ + F + +P D E+ G
Sbjct: 107 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVHPDPGTWDSFLEKFMVGE 166
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
+G ++H ++ ++L YED K + ++++ +F+G S E +
Sbjct: 167 VCYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLPE-----ETVD 221
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
+ + SF +K T + P + S+
Sbjct: 222 FMVQHTSFKEMKKNPMTNYTTIPQEIMDHSI 252
>pdb|1G3M|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase In
Complex With In-Active Cofactor Pap And 3,5,3',5'-
Tetrachloro-Biphenyl-4,4'-Diol
pdb|1G3M|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase In
Complex With In-Active Cofactor Pap And 3,5,3',5'-
Tetrachloro-Biphenyl-4,4'-Diol
Length = 294
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERACCGI 63
TH P LP S +C I+YL N D ++ + F + P E E+ G
Sbjct: 106 THLPPELLPASFWEKDCKIIYLCRNAKDVAVSFYYFFLMVAGHPNPGSFPEFVEKFMQGQ 165
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
+G ++H ++ +FL YED K D+ V +L FL E + + ++
Sbjct: 166 VPYGSWYKHVKSWWEKGKSPRVLFLFYEDLKEDIRKEVIKLIHFL-----ERKPSEELVD 220
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
I SF +K +T + PD N L
Sbjct: 221 RIIHHTSFQEMKNNPSTNYTTLPDEIMNQKL 251
>pdb|1HY3|A Chain A, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
pdb|1HY3|B Chain B, Crystal Structure Of Human Estrogen Sulfotransferase V269e
Mutant In The Presence Of Paps
Length = 294
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERACCGI 63
TH P LP S +C I+YL N D ++ + F + P E E+ G
Sbjct: 106 THLPPELLPASFWEKDCKIIYLCRNAKDVAVSFYYFFLMVAGHPNPGSFPEFVEKFMQGQ 165
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
+G ++H ++ +FL YED K D+ V +L FL E + + ++
Sbjct: 166 VPYGSWYKHVKSWWEKGKSPRVLFLFYEDLKEDIRKEVIKLIHFL-----ERKPSEELVD 220
Query: 116 EISKLCSFDNIKGLEATKFGKQPDGTRNFSL 146
I SF +K +T + PD N L
Sbjct: 221 RIIHHTSFQEMKNNPSTNYTTLPDEIMNQKL 251
>pdb|1Z29|A Chain A, Crystal Structures Of Sult1a2 And Sult1a13: Implications
In The Bioactivation Of N-Hydroxy-2-Acetylamino Fluorine
(Oh-Aaf)
Length = 295
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERACCGI 63
TH P A LP ++L +VY+ N D ++ + F + P + E+ G
Sbjct: 107 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYHMAKVYPHPGTWESFLEKFMAGE 166
Query: 64 QSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSE 106
S+G ++H ++ ++L YED K + ++++ +F+G S E
Sbjct: 167 VSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPE 217
>pdb|3CKL|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult1b1 In Complex With Pap And Resveratrol
pdb|3CKL|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult1b1 In Complex With Pap And Resveratrol
Length = 298
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDLE--PSRIDEAFERACCG 62
TH P LP S +NC ++YL N D ++ + F + +L+ P +E E+ G
Sbjct: 110 THLPTDLLPKSFWENNCKMIYLARNAKDVSVSYYHF-DLMNNLQPFPGTWEEYLEKFLTG 168
Query: 63 IQSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVI 114
++G + H ++ +FL YED K + +K++ FL + ++ ++
Sbjct: 169 KVAYGSWFTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLND-----EIL 223
Query: 115 GEISKLCSFDNIKGLEATKFGKQPDGTRNFS 145
I SF+ +K + P + S
Sbjct: 224 DRIIHHTSFEVMKDNPLVNYTHLPTTVMDHS 254
>pdb|2Z5F|A Chain A, Human Sulfotransferase Sult1b1 In Complex With Pap
pdb|2Z5F|B Chain B, Human Sulfotransferase Sult1b1 In Complex With Pap
Length = 298
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDLE--PSRIDEAFERACCG 62
TH P LP S +NC ++YL N D ++ + F + +L+ P +E E+ G
Sbjct: 110 THLPTDLLPKSFWENNCKMIYLARNAKDVSVSYYHF-DLMNNLQPFPGTWEEYLEKFLTG 168
Query: 63 IQSFGPIWEHYFLFF--------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVI 114
++G + H ++ +FL YED K + +K++ FL + ++ ++
Sbjct: 169 KVAYGSWFTHVKNWWKRKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLND-----EIL 223
Query: 115 GEISKLCSFDNIKGLEATKFGKQPDGTRNFS 145
I SF+ +K + P + S
Sbjct: 224 DRIIHHTSFEVMKDNPLVNYTHLPTTVMDHS 254
>pdb|1Q1Z|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap
pdb|1Q20|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap And Pregnenolone
pdb|1Q22|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(sult2b1b) In The Presence Of Dhea And Pap
Length = 299
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERACCGI 63
+H P + +S ++Y+ NP D ++ + + L +P D+ G
Sbjct: 111 SHLPIQIFTKAFFSSKAKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQFLRDFLKGE 170
Query: 64 QSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
FG ++H + F+F+ YE+ ++DL V+R+ FLG G+EA +G
Sbjct: 171 VQFGSWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPL--GKEA---LG 225
Query: 116 EISKLCSFDNIKGLEATKFGKQP 138
+ +F +K + + P
Sbjct: 226 SVVAHSTFSAMKANTMSNYTLLP 248
>pdb|1Q1Q|A Chain A, Crystal Structure Of Human Pregnenolone Sulfotransferase
(Sult2b1a) In The Presence Of Pap
Length = 350
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 5 THSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRDL-EPSRIDEAFERACCGI 63
+H P + +S ++Y+ NP D ++ + + L +P D+ G
Sbjct: 109 SHLPIQIFTKAFFSSKAKVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQFLRDFLKGE 168
Query: 64 QSFGPIWEHYFLF--------FIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIG 115
FG ++H + F+F+ YE+ ++DL V+R+ FLG G+EA +G
Sbjct: 169 VQFGSWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPL--GKEA---LG 223
Query: 116 EISKLCSFDNIKGLEATKF 134
+ +F +K + +
Sbjct: 224 SVVAHSTFSAMKANTMSNY 242
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound
State
pdb|2HF4|A Chain A, Crystal Structure Of Monomeric Actin In Its Atp-Bound
State
pdb|3MN7|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN9|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MMV|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|F Chain F, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|K Chain K, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
Length = 374
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ EE V KLC
Sbjct: 157 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLC 216
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin
D
pdb|3EKU|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin
D
pdb|3EL2|A Chain A, Crystal Structure Of Monomeric Actin Bound To Ca-Atp
Length = 375
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ EE V KLC
Sbjct: 158 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLC 217
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin
pdb|2OAN|B Chain B, Structure Of Oxidized Beta-Actin
pdb|2OAN|C Chain C, Structure Of Oxidized Beta-Actin
pdb|2OAN|D Chain D, Structure Of Oxidized Beta-Actin
Length = 375
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ E V KLC
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 217
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4
A
Length = 375
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ E V KLC
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 217
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex
pdb|3LUE|A Chain A, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|B Chain B, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|C Chain C, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|D Chain D, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|E Chain E, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|F Chain F, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|G Chain G, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|H Chain H, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|I Chain I, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|J Chain J, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3J0S|A Chain A, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|B Chain B, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|C Chain C, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|D Chain D, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|E Chain E, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|F Chain F, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|G Chain G, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|H Chain H, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|I Chain I, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|J Chain J, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|K Chain K, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|L Chain L, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3UB5|A Chain A, Profilin:actin With A Wide Open Nucleotide Cleft
Length = 374
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ E V KLC
Sbjct: 157 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 216
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin
pdb|1HLU|A Chain A, Structure Of Bovine Beta-Actin-Profilin Complex With Actin
Bound Atp Phosphates Solvent Accessible
Length = 375
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ E V KLC
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 217
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|M Chain M, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ E V KLC
Sbjct: 153 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 212
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 375
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ E V KLC
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 217
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D
Length = 375
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 62 GIQSFGPIWEHYFLFFIFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121
G+ PI+E Y L L+ + RDLT + ++ G SF+ E V KLC
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLC 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.145 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,587,619
Number of Sequences: 62578
Number of extensions: 171330
Number of successful extensions: 418
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 42
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)