Query 042173
Match_columns 147
No_of_seqs 169 out of 1075
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02164 sulfotransferase 100.0 5.1E-43 1.1E-47 279.8 9.9 136 1-136 146-293 (346)
2 KOG1584 Sulfotransferase [Gene 100.0 9.7E-43 2.1E-47 269.8 7.3 134 1-134 105-247 (297)
3 PF00685 Sulfotransfer_1: Sulf 99.9 1.1E-25 2.3E-30 171.5 3.3 129 1-134 85-223 (267)
4 KOG3704 Heparan sulfate D-gluc 98.5 9.7E-08 2.1E-12 74.0 3.5 91 12-105 180-290 (360)
5 PF13469 Sulfotransfer_3: Sulf 98.5 7.8E-08 1.7E-12 69.7 2.0 81 18-105 126-213 (215)
6 KOG3988 Protein-tyrosine sulfo 98.3 2E-06 4.3E-11 67.2 5.9 79 19-108 176-266 (378)
7 KOG3703 Heparan sulfate N-deac 98.2 3.1E-06 6.7E-11 71.3 6.0 85 19-103 686-790 (873)
8 PF09037 Sulphotransf: Stf0 su 97.9 3.7E-06 7.9E-11 64.9 1.1 30 78-107 191-220 (245)
9 PF06990 Gal-3-0_sulfotr: Gala 94.3 0.12 2.5E-06 42.8 5.7 57 2-58 129-190 (402)
10 PF03567 Sulfotransfer_2: Sulf 93.6 0.042 9E-07 41.0 1.8 23 20-42 78-100 (253)
11 KOG3922 Sulfotransferases [Pos 91.8 0.096 2.1E-06 41.7 1.6 24 19-42 159-182 (361)
12 COG4424 Uncharacterized protei 88.4 0.92 2E-05 34.4 4.3 50 78-129 190-239 (250)
13 PF07498 Rho_N: Rho terminatio 66.8 6.7 0.00015 21.8 2.3 37 84-120 1-37 (43)
14 KOG4651 Chondroitin 6-sulfotra 62.3 4.8 0.0001 32.4 1.6 40 20-59 146-188 (324)
15 PF03484 B5: tRNA synthetase B 60.4 10 0.00022 23.2 2.5 30 93-127 8-37 (70)
16 smart00874 B5 tRNA synthetase 54.5 16 0.00035 22.0 2.7 28 93-125 8-35 (71)
17 PF13443 HTH_26: Cro/C1-type H 51.7 9.9 0.00021 22.2 1.4 18 89-106 39-56 (63)
18 PF14069 SpoVIF: Stage VI spor 51.3 27 0.00059 22.3 3.4 35 81-120 23-59 (79)
19 PF02969 TAF: TATA box binding 51.2 16 0.00035 22.4 2.3 20 89-108 5-25 (66)
20 KOG4157 beta-1,6-N-acetylgluco 49.7 3.2 6.9E-05 34.7 -1.4 41 68-108 323-369 (418)
21 COG3551 Uncharacterized protei 46.8 37 0.00079 27.5 4.2 72 22-110 136-215 (402)
22 cd00808 GluRS_core catalytic c 46.6 15 0.00034 28.2 2.1 45 62-106 12-69 (239)
23 PF14726 RTTN_N: Rotatin, an a 45.6 24 0.00053 23.4 2.6 30 78-108 18-47 (98)
24 PF12964 DUF3853: Protein of u 43.1 17 0.00038 24.0 1.6 29 92-120 47-77 (96)
25 PRK05710 glutamyl-Q tRNA(Asp) 39.0 22 0.00047 28.4 1.9 68 63-130 17-112 (299)
26 PF04664 OGFr_N: Opioid growth 37.4 21 0.00046 27.1 1.5 42 78-124 74-115 (213)
27 PF13833 EF-hand_8: EF-hand do 36.6 68 0.0015 17.8 3.4 26 90-120 7-33 (54)
28 PF11952 DUF3469: Protein of u 36.5 76 0.0017 20.5 3.8 38 78-120 21-64 (87)
29 PF13318 DUF4089: Protein of u 34.7 55 0.0012 18.8 2.7 23 93-120 2-24 (50)
30 cd00418 GlxRS_core catalytic c 34.5 39 0.00085 25.9 2.6 30 78-107 36-70 (230)
31 smart00530 HTH_XRE Helix-turn- 32.5 42 0.00091 17.5 1.9 17 89-105 38-54 (56)
32 PF04036 DUF372: Domain of unk 32.1 35 0.00075 18.6 1.4 21 98-120 17-37 (38)
33 PF01498 HTH_Tnp_Tc3_2: Transp 31.5 53 0.0011 19.7 2.4 38 83-125 6-46 (72)
34 PF03672 UPF0154: Uncharacteri 30.8 45 0.00097 20.4 1.9 30 85-119 26-58 (64)
35 TIGR03070 couple_hipB transcri 30.3 67 0.0015 17.7 2.6 27 78-104 31-58 (58)
36 cd00807 GlnRS_core catalytic c 29.6 49 0.0011 25.6 2.4 29 78-106 36-69 (238)
37 KOG3955 Heparan sulfate 6-O-su 29.6 39 0.00085 27.0 1.9 24 20-43 158-181 (361)
38 PHA01976 helix-turn-helix prot 29.5 55 0.0012 19.2 2.2 28 78-105 31-59 (67)
39 TIGR03838 queuosine_YadB gluta 29.1 49 0.0011 26.0 2.4 30 78-107 35-69 (272)
40 COG3655 Predicted transcriptio 28.4 46 0.001 20.9 1.7 25 82-106 37-61 (73)
41 PF02742 Fe_dep_repr_C: Iron d 28.1 14 0.00031 22.5 -0.6 37 92-128 17-54 (71)
42 PF13413 HTH_25: Helix-turn-he 27.1 41 0.0009 20.1 1.3 16 90-105 45-60 (62)
43 PF08020 DUF1706: Protein of u 27.0 69 0.0015 23.3 2.7 74 25-106 41-125 (166)
44 COG5598 Trimethylamine:corrino 26.9 58 0.0013 28.0 2.6 38 70-108 390-431 (526)
45 PLN00135 malate dehydrogenase 26.3 65 0.0014 25.7 2.7 24 18-42 99-122 (309)
46 PF12844 HTH_19: Helix-turn-he 26.1 62 0.0013 18.7 2.0 28 79-106 29-57 (64)
47 PRK14895 gltX glutamyl-tRNA sy 25.8 59 0.0013 28.0 2.5 29 78-106 39-72 (513)
48 cd01038 Endonuclease_DUF559 Do 25.4 19 0.00042 23.8 -0.4 26 75-100 81-107 (108)
49 COG5126 FRQ1 Ca2+-binding prot 25.4 92 0.002 22.5 3.1 28 89-121 38-65 (160)
50 TIGR02684 dnstrm_HI1420 probab 24.0 94 0.002 20.0 2.7 28 78-105 59-87 (89)
51 cd09287 GluRS_non_core catalyt 23.8 67 0.0015 24.8 2.2 30 78-107 36-72 (240)
52 PF15382 DUF4609: Domain of un 23.5 56 0.0012 20.0 1.4 40 24-75 19-58 (70)
53 PF07796 DUF1638: Protein of u 23.0 80 0.0017 22.5 2.4 31 88-118 133-163 (166)
54 PF07582 AP_endonuc_2_N: AP en 21.8 1.3E+02 0.0028 17.7 2.7 25 78-102 18-42 (55)
55 PF14821 Thr_synth_N: Threonin 21.6 1.4E+02 0.0029 18.7 3.0 21 96-121 58-78 (79)
56 PLN00064 photosystem II protei 21.1 1.4E+02 0.0031 21.7 3.3 27 82-108 63-89 (166)
57 PRK09767 hypothetical protein; 21.1 29 0.00064 23.7 -0.2 27 78-104 88-114 (117)
58 PF01381 HTH_3: Helix-turn-hel 20.6 84 0.0018 17.4 1.8 27 79-105 26-53 (55)
59 COG4542 PduX Protein involved 20.4 1.1E+02 0.0023 24.3 2.7 28 86-118 102-129 (293)
60 PLN02627 glutamyl-tRNA synthet 20.4 81 0.0018 27.4 2.3 44 64-107 58-114 (535)
No 1
>PLN02164 sulfotransferase
Probab=100.00 E-value=5.1e-43 Score=279.78 Aligned_cols=136 Identities=40% Similarity=0.784 Sum_probs=124.8
Q ss_pred CccccCCCCCCCCCccCCCCceEEEEecCchhhhHhhhhhhccCCC--CCCCCHHHHHHHHhcCCCccCChHHHhhhHh-
Q 042173 1 DFFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRD--LEPSRIDEAFERACCGIQSFGPIWEHYFLFF- 77 (147)
Q Consensus 1 R~~ktHl~~~~lp~~~~~p~aKiI~i~RnP~D~~vS~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~- 77 (147)
|+||||+|++++|+++++++||||||+|||+|++||+|||...... ....+|+++++.|+.|...+|+||+|+++||
T Consensus 146 RlikTHlp~~~lP~~i~~~~~KiIyv~RnPkDv~VS~yhf~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~ 225 (346)
T PLN02164 146 TLFSTHIPYGLLPDSVVKSGCKMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWK 225 (346)
T ss_pred CeeEecCChhhCccccccCCceEEEEecCchhheeeHHHHHhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998765443 2236899999999999999999999999999
Q ss_pred ---------hhhhccCccCChHHHHHHHHHHhCCCccchhhhhhHHHHHHHhcChhHHhhhhhhcCCC
Q 042173 78 ---------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLCSFDNIKGLEATKFGK 136 (147)
Q Consensus 78 ---------l~v~YEdL~~d~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv~~~sf~~mk~~~~~~~g~ 136 (147)
|+|+||||++||.++|++||+|||+++++++++++++++|+++|||++||+++.++.|.
T Consensus 226 ~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~~~~~v~~ive~~SFe~Mk~~e~n~~~~ 293 (346)
T PLN02164 226 AYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEKGVVEKVVKLCSFETLKNLEANKGEK 293 (346)
T ss_pred HhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhhcchHHHHHHHHHCCHHHHhhhHhhcccc
Confidence 89999999999999999999999999999877888999999999999999998766553
No 2
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=9.7e-43 Score=269.80 Aligned_cols=134 Identities=40% Similarity=0.766 Sum_probs=118.8
Q ss_pred CccccCCCCCCCCCccCCCCceEEEEecCchhhhHhhhhhhccCCC-CCCCCHHHHHHHHhcCCCccCChHHHhhhHh--
Q 042173 1 DFFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRD-LEPSRIDEAFERACCGIQSFGPIWEHYFLFF-- 77 (147)
Q Consensus 1 R~~ktHl~~~~lp~~~~~p~aKiI~i~RnP~D~~vS~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-- 77 (147)
|+||||+|+++||.++++++|||||+.|||+|++||+|||.++... ..+++|++|++.|++|.+.+|+||+|+++||
T Consensus 105 Rl~kTHlP~~lLp~s~~~~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~~~~~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~ 184 (297)
T KOG1584|consen 105 RLFKTHLPFQLLPESLKESKCKVVYVCRNPKDVLVSYYHFNRMLKTQPGPGTFEEFFESFCNGVVPYGPWWDHVLGYWEL 184 (297)
T ss_pred cceeccCChhhcchhhhcCCCcEEEEecCccceeeeHHHHHhhhccCCCCCcHHHHHHHHhCCcCCcCChHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999987655 4556699999999999999999999999999
Q ss_pred ------hhhhccCccCChHHHHHHHHHHhCCCccchhhhhhHHHHHHHhcChhHHhhhhhhcC
Q 042173 78 ------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLCSFDNIKGLEATKF 134 (147)
Q Consensus 78 ------l~v~YEdL~~d~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv~~~sf~~mk~~~~~~~ 134 (147)
|+++||||++||..+|+|||+|||+++++++.++++...+++.||+++|++.+.+..
T Consensus 185 ~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~~~~~~~~~n~l~nle~n~~ 247 (297)
T KOG1584|consen 185 EDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEEEDKGVVHLSFELCSLNPLSNLEVNKT 247 (297)
T ss_pred cCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHHHHHHHHhhccccCceeccc
Confidence 999999999999999999999999999999966666666666666666666554433
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.91 E-value=1.1e-25 Score=171.54 Aligned_cols=129 Identities=29% Similarity=0.478 Sum_probs=105.7
Q ss_pred CccccCCCCCCCCCccCCCCceEEEEecCchhhhHhhhhhhccCCC-CCCC-CHHHHHHHHhcCCCccCChHHHhhhHh-
Q 042173 1 DFFPTHSPFASLPLSILTSNCGIVYLRTNPLDQFITDWQFIPRLRD-LEPS-RIDEAFERACCGIQSFGPIWEHYFLFF- 77 (147)
Q Consensus 1 R~~ktHl~~~~lp~~~~~p~aKiI~i~RnP~D~~vS~y~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~- 77 (147)
|+++||+++..++..+..|++|+|+|+|||+|+++|.+++...... .... .++++++.++.....++.|++++..|+
T Consensus 85 ~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (267)
T PF00685_consen 85 RFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFSDPGQRFEEFVDWFLQPRLLYGSWADHLKSWLS 164 (267)
T ss_dssp EEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTSTTHHSHHHHHHHHHHTTHSTTSCHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccccceecccccchhHHHHHHHHhcccccccchhhhhhhhhhhccccccccccccccchhh
Confidence 5789999999887665568999999999999999999998865443 1222 378888877777777889999999887
Q ss_pred -------hhhhccCccCChHHHHHHHHHHhCCCccchhhhhhHHHHHHHhcChhHHhhhhhhcC
Q 042173 78 -------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLCSFDNIKGLEATKF 134 (147)
Q Consensus 78 -------l~v~YEdL~~d~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv~~~sf~~mk~~~~~~~ 134 (147)
++|+||||+.||.+++++|++|||++++++. ++.+++.+++++|+..+..+.
T Consensus 165 ~~~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 223 (267)
T PF00685_consen 165 SFDRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEP-----LDKIVEKSSFDNMRSKEARNK 223 (267)
T ss_dssp HTTTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHH-----HHHHHHHTSHHHHHHETTTSS
T ss_pred hhccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhh-----hHHHHHhhhhhhhcccccccc
Confidence 8999999999999999999999999999999 999999999999999877654
No 4
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.7e-08 Score=73.96 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=66.2
Q ss_pred CCCccC--CCCceEEEEecCchhhhHhhhhhhccCCCCCCCCHHHHHHHHhcC----------CCccCChHHHhhhHh--
Q 042173 12 LPLSIL--TSNCGIVYLRTNPLDQFITDWQFIPRLRDLEPSRIDEAFERACCG----------IQSFGPIWEHYFLFF-- 77 (147)
Q Consensus 12 lp~~~~--~p~aKiI~i~RnP~D~~vS~y~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~h~~~~~-- 77 (147)
+|+++. +|+.|.|+|+|||..+++|.|-+...... +-.+++.+ .|.++ .+..|-|..|+..|+
T Consensus 180 ~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~-~~P~fe~l--afkn~~~g~id~~w~ai~iglY~~Hle~WL~y 256 (360)
T KOG3704|consen 180 VPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKP-DIPTFEVL--AFKNRTAGLIDTSWKAIRIGLYAVHLENWLRY 256 (360)
T ss_pred cchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCC-CCCceeee--eeecCccceeecchhhhhhhHHHHHHHHHHHh
Confidence 455554 48999999999999999999987644221 22233321 12111 122356788999997
Q ss_pred ------hhhhccCccCChHHHHHHHHHHhCCCcc
Q 042173 78 ------IFLKYEDPKRDLTFCVKRLADFLGCSFS 105 (147)
Q Consensus 78 ------l~v~YEdL~~d~~~~v~~I~~FLG~~~~ 105 (147)
++|.=|-|+.||.+++.|+-+|||+.-.
T Consensus 257 FpL~q~lfVsGerli~dPa~E~~rVqdFLgLkr~ 290 (360)
T KOG3704|consen 257 FPLRQILFVSGERLISDPAGELGRVQDFLGLKRV 290 (360)
T ss_pred CchhheEEecCceeecCcHHHHHHHHHHhcccce
Confidence 8899999999999999999999999743
No 5
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=98.45 E-value=7.8e-08 Score=69.66 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=40.8
Q ss_pred CCCceEEEEecCchhhhHhhhhhhccC--CCCCCCC-HHHHHHHHhcCCCccCChHHHhhhHhhhhhc----cCccCChH
Q 042173 18 TSNCGIVYLRTNPLDQFITDWQFIPRL--RDLEPSR-IDEAFERACCGIQSFGPIWEHYFLFFIFLKY----EDPKRDLT 90 (147)
Q Consensus 18 ~p~aKiI~i~RnP~D~~vS~y~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~l~v~Y----EdL~~d~~ 90 (147)
-|+ |+|+++|||+|++.|+....... ....... ............. .+......|+.+.| |||.+||.
T Consensus 126 ~p~-~~V~i~RdP~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~yedl~~~p~ 200 (215)
T PF13469_consen 126 FPD-RFVHIVRDPRDVAASWLRMFLRHLLRRSFYEDQWARWYWEWRRALR----RWRDYPHRWLRVRYEWRYEDLVADPE 200 (215)
T ss_dssp STT-EEEEEE--HHHHHHHHHHHCHHHHHCTCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHEHHHHHHSHH
T ss_pred CCC-eEEEEEeChHHHHhhHHHHhhhhhhhcccchhhhHHhHHHHHHHHH----hhcccHHHHHHHHhhcCHHHHHHCHH
Confidence 468 99999999999999976544110 1001111 1110000000000 00002223355555 99999999
Q ss_pred HHHHHHHHHhCCCcc
Q 042173 91 FCVKRLADFLGCSFS 105 (147)
Q Consensus 91 ~~v~~I~~FLG~~~~ 105 (147)
+++++||+ + ++++
T Consensus 201 ~~l~~i~~-~-~~l~ 213 (215)
T PF13469_consen 201 ATLRRICA-L-LELT 213 (215)
T ss_dssp HHHHHHHH-C-----
T ss_pred HHHHHHHH-h-hCCc
Confidence 99999999 6 7765
No 6
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2e-06 Score=67.18 Aligned_cols=79 Identities=11% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCceEEEEecCchhhhHhhhhhhccCCCCCCCCHHHHHHHHhcCCCccCChHHHhhhH-h-----------hhhhccCcc
Q 042173 19 SNCGIVYLRTNPLDQFITDWQFIPRLRDLEPSRIDEAFERACCGIQSFGPIWEHYFLF-F-----------IFLKYEDPK 86 (147)
Q Consensus 19 p~aKiI~i~RnP~D~~vS~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~-----------l~v~YEdL~ 86 (147)
||||++.++||.+.++-|.---..-....+..+..+.+.. |++..+- . +-|.||.|+
T Consensus 176 PNAKfllMvRDgRAtVhSmIsRKVtIaGfdlssyr~c~tk-----------WN~aie~M~~QC~~vg~~~Cl~VyYEqLV 244 (378)
T KOG3988|consen 176 PNAKFLLMVRDGRATVHSMISRKVTIAGFDLSSYRQCMTK-----------WNQAIEVMYFQCMEVGKKKCLKVYYEQLV 244 (378)
T ss_pred CCceEEEEEecchHHHHHHHhccceeccccchHHHHHHHH-----------HHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 8999999999999999888532211111222233332222 2221110 0 789999999
Q ss_pred CChHHHHHHHHHHhCCCccchh
Q 042173 87 RDLTFCVKRLADFLGCSFSEGE 108 (147)
Q Consensus 87 ~d~~~~v~~I~~FLG~~~~~~~ 108 (147)
.-|++.+++|.+||++||+++.
T Consensus 245 lhPe~~mr~Il~FLdipw~d~v 266 (378)
T KOG3988|consen 245 LHPEEWMRRILKFLDIPWSDAV 266 (378)
T ss_pred hCHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999999999999876
No 7
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.1e-06 Score=71.32 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=62.7
Q ss_pred CCceEEEEecCchhhhHhhhhhhccCCCC------------CCCCHHHHHHHHhcCCCccCChHHHhhhHh--------h
Q 042173 19 SNCGIVYLRTNPLDQFITDWQFIPRLRDL------------EPSRIDEAFERACCGIQSFGPIWEHYFLFF--------I 78 (147)
Q Consensus 19 p~aKiI~i~RnP~D~~vS~y~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~--------l 78 (147)
|.||||.|+-||.|++.|+|.|.+...++ ...+-...++...+.-...|.|..|+..|+ +
T Consensus 686 P~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~y~~~~Qll 765 (873)
T KOG3703|consen 686 PHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLTYFPAQQLL 765 (873)
T ss_pred CcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHhccCcchHHHHHHHHHHhCCcccEE
Confidence 78999999999999999999998765540 000111111211111223467888999997 7
Q ss_pred hhhccCccCChHHHHHHHHHHhCCC
Q 042173 79 FLKYEDPKRDLTFCVKRLADFLGCS 103 (147)
Q Consensus 79 ~v~YEdL~~d~~~~v~~I~~FLG~~ 103 (147)
+|.=++|..||..++..+-.|||+.
T Consensus 766 iiDg~qLr~~Pa~vm~~~qkfLgv~ 790 (873)
T KOG3703|consen 766 IIDGQQLRTNPATVMNELQKFLGVT 790 (873)
T ss_pred EEccHHhccCcHHHHHHHHHHhCCC
Confidence 8899999999999999999999994
No 8
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=97.91 E-value=3.7e-06 Score=64.89 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=26.2
Q ss_pred hhhhccCccCChHHHHHHHHHHhCCCccch
Q 042173 78 IFLKYEDPKRDLTFCVKRLADFLGCSFSEG 107 (147)
Q Consensus 78 l~v~YEdL~~d~~~~v~~I~~FLG~~~~~~ 107 (147)
+.|.||||.+||.+++.+|++|||++....
T Consensus 191 l~i~YEdL~~dp~~~~~~Vl~fLgv~~~~~ 220 (245)
T PF09037_consen 191 LEITYEDLLADPQKTVARVLDFLGVDPPLA 220 (245)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHTTS-GGGS
T ss_pred eEEEHHHHHhCHHHHHHHHHHHhCCCCccc
Confidence 679999999999999999999999976553
No 9
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=94.27 E-value=0.12 Score=42.84 Aligned_cols=57 Identities=12% Similarity=0.316 Sum_probs=37.0
Q ss_pred ccccCCCCCCCC-CccCCCCceEEEEecCchhhhHhhhhhhccCCC----CCCCCHHHHHHH
Q 042173 2 FFPTHSPFASLP-LSILTSNCGIVYLRTNPLDQFITDWQFIPRLRD----LEPSRIDEAFER 58 (147)
Q Consensus 2 ~~ktHl~~~~lp-~~~~~p~aKiI~i~RnP~D~~vS~y~~~~~~~~----~~~~~~~~~~~~ 58 (147)
++..|+.++.-- ..+--+++++|-|+|||...+.|.|++...... ....++++|++.
T Consensus 129 Il~~H~rfn~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~~~~~~~~~~~~~~l~~FL~~ 190 (402)
T PF06990_consen 129 ILCHHMRFNRPEVRKLMPPDTKYITILRDPVSHFESSFNYYKRYAPAFRKAPNNSLEEFLED 190 (402)
T ss_pred EEeehhccCHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhhccchhhhcCCcchHHHHHhC
Confidence 455677765310 122234899999999999999999998754221 222347777663
No 10
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=93.62 E-value=0.042 Score=41.02 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=17.3
Q ss_pred CceEEEEecCchhhhHhhhhhhc
Q 042173 20 NCGIVYLRTNPLDQFITDWQFIP 42 (147)
Q Consensus 20 ~aKiI~i~RnP~D~~vS~y~~~~ 42 (147)
+...|.++|||.++++|.|++..
T Consensus 78 ~~~~~t~vRdP~~R~vS~y~~~~ 100 (253)
T PF03567_consen 78 SYFKFTFVRDPVDRLVSAYYDKI 100 (253)
T ss_dssp --EEEEEE--HHHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHH
Confidence 47789999999999999998765
No 11
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.096 Score=41.72 Aligned_cols=24 Identities=8% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCceEEEEecCchhhhHhhhhhhc
Q 042173 19 SNCGIVYLRTNPLDQFITDWQFIP 42 (147)
Q Consensus 19 p~aKiI~i~RnP~D~~vS~y~~~~ 42 (147)
++.=+|-|+|||.++++|+|.|.+
T Consensus 159 ~~PIYINvIRdPveRllS~yyflR 182 (361)
T KOG3922|consen 159 ARPIYINVIRDPVERLLSYYYFLR 182 (361)
T ss_pred CCceEEeeeccHHHHHHhHhhhhc
Confidence 345568889999999999999875
No 12
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.44 E-value=0.92 Score=34.36 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=39.5
Q ss_pred hhhhccCccCChHHHHHHHHHHhCCCccchhhhhhHHHHHHHhcChhHHhhh
Q 042173 78 IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLCSFDNIKGL 129 (147)
Q Consensus 78 l~v~YEdL~~d~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv~~~sf~~mk~~ 129 (147)
.-+-||.|.+||.+.+..+|+.||++..-+. ..+ +++-.+..|-+-|..-
T Consensus 190 ~riaYe~Lsadp~aava~~~ealgv~~p~a~-~p~-~a~qad~~s~eWv~Ry 239 (250)
T COG4424 190 IRIAYEVLSADPTAAVASVLEALGVDPPLAP-APM-LARQADQRSDEWVDRY 239 (250)
T ss_pred HHHhHHHHccCcHHHHHHHHHHhCCCCCCCc-Cch-HHHhhhhhhHHHHHHH
Confidence 7889999999999999999999999865432 223 6666777777777653
No 13
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=66.76 E-value=6.7 Score=21.77 Aligned_cols=37 Identities=19% Similarity=0.028 Sum_probs=26.4
Q ss_pred CccCChHHHHHHHHHHhCCCccchhhhhhHHHHHHHh
Q 042173 84 DPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKL 120 (147)
Q Consensus 84 dL~~d~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv~~ 120 (147)
||.+=+..+++.||.-+|++-.....++.++.+|++.
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~ 37 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILKA 37 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHH
Confidence 4556678899999999999866666677778888764
No 14
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=62.31 E-value=4.8 Score=32.44 Aligned_cols=40 Identities=5% Similarity=0.012 Sum_probs=24.7
Q ss_pred CceEEEEecCchhhhHhhhhhhccCC---CCCCCCHHHHHHHH
Q 042173 20 NCGIVYLRTNPLDQFITDWQFIPRLR---DLEPSRIDEAFERA 59 (147)
Q Consensus 20 ~aKiI~i~RnP~D~~vS~y~~~~~~~---~~~~~~~~~~~~~~ 59 (147)
+..=+.++|||.+++||.|.-.=... .....+...+++..
T Consensus 146 ~~~kfaFIRDP~eRFVS~y~dKcv~~~~cy~c~~~m~civ~k~ 188 (324)
T KOG4651|consen 146 DTVKFAFIRDPFERFVSAYLDKCVNENNCYDCGTNMRCIVKKI 188 (324)
T ss_pred CeEEEEEecCcHHHHHHHHHHHHhccccccCCcccHHHHHHHH
Confidence 33335689999999999996431111 13445666666544
No 15
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=60.41 E-value=10 Score=23.19 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCccchhhhhhHHHHHHHhcChhHHh
Q 042173 93 VKRLADFLGCSFSEGEEANGVIGEISKLCSFDNIK 127 (147)
Q Consensus 93 v~~I~~FLG~~~~~~~~~~~~~~~iv~~~sf~~mk 127 (147)
..+|.+.||++++.++ +.++++...|+--.
T Consensus 8 ~~~i~~~lG~~i~~~~-----i~~~L~~lg~~~~~ 37 (70)
T PF03484_consen 8 LDKINKLLGIDISPEE-----IIKILKRLGFKVEK 37 (70)
T ss_dssp HHHHHHHHTS---HHH-----HHHHHHHTT-EEEE
T ss_pred HHHHHHHhCCCCCHHH-----HHHHHHHCCCEEEE
Confidence 3578889999999999 99999988886543
No 16
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=54.51 E-value=16 Score=22.01 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCccchhhhhhHHHHHHHhcChhH
Q 042173 93 VKRLADFLGCSFSEGEEANGVIGEISKLCSFDN 125 (147)
Q Consensus 93 v~~I~~FLG~~~~~~~~~~~~~~~iv~~~sf~~ 125 (147)
..++...||+++++++ +.++++...|+.
T Consensus 8 ~~~i~~llG~~i~~~e-----i~~~L~~lg~~~ 35 (71)
T smart00874 8 RERINRLLGLDLSAEE-----IEEILKRLGFEV 35 (71)
T ss_pred HHHHHHHHCCCCCHHH-----HHHHHHHCCCeE
Confidence 4578899999999999 999999988875
No 17
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=51.71 E-value=9.9 Score=22.22 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHhCCCccc
Q 042173 89 LTFCVKRLADFLGCSFSE 106 (147)
Q Consensus 89 ~~~~v~~I~~FLG~~~~~ 106 (147)
...++.+||.+||+++++
T Consensus 39 ~~~~l~~ia~~l~~~~~e 56 (63)
T PF13443_consen 39 SLDTLEKIAKALNCSPEE 56 (63)
T ss_dssp -HHHHHHHHHHHT--HHH
T ss_pred cHHHHHHHHHHcCCCHHH
Confidence 468899999999998543
No 18
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=51.34 E-value=27 Score=22.26 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=25.9
Q ss_pred hccCccCC--hHHHHHHHHHHhCCCccchhhhhhHHHHHHHh
Q 042173 81 KYEDPKRD--LTFCVKRLADFLGCSFSEGEEANGVIGEISKL 120 (147)
Q Consensus 81 ~YEdL~~d--~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv~~ 120 (147)
.-.||..+ .+..|++++.-+|.+++++. .++||+.
T Consensus 23 ~~adlqdE~~vR~lIk~vs~~an~~Vs~~~-----ed~IV~~ 59 (79)
T PF14069_consen 23 QKADLQDEKKVRQLIKQVSQIANKPVSKEQ-----EDQIVQA 59 (79)
T ss_pred chhhcccHHHHHHHHHHHHHHhCCCCCHHH-----HHHHHHH
Confidence 34445543 37788899999999999998 7777654
No 19
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=51.21 E-value=16 Score=22.38 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhCC-Cccchh
Q 042173 89 LTFCVKRLADFLGC-SFSEGE 108 (147)
Q Consensus 89 ~~~~v~~I~~FLG~-~~~~~~ 108 (147)
|.+.|+.+++=+|+ +++++.
T Consensus 5 ~~esvk~iAes~Gi~~l~de~ 25 (66)
T PF02969_consen 5 SQESVKDIAESLGISNLSDEA 25 (66)
T ss_dssp -HHHHHHHHHHTT---B-HHH
T ss_pred CHHHHHHHHHHcCCCCCCHHH
Confidence 67889999999999 577766
No 20
>KOG4157 consensus beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=49.71 E-value=3.2 Score=34.66 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=33.3
Q ss_pred ChHHHhhhHh------hhhhccCccCChHHHHHHHHHHhCCCccchh
Q 042173 68 PIWEHYFLFF------IFLKYEDPKRDLTFCVKRLADFLGCSFSEGE 108 (147)
Q Consensus 68 ~~~~h~~~~~------l~v~YEdL~~d~~~~v~~I~~FLG~~~~~~~ 108 (147)
.|.-|...|. +.++||+|..++...+..+..|+|++..+..
T Consensus 323 ~~ss~~~~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (418)
T KOG4157|consen 323 GWSSHTLSWARKGTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPESL 369 (418)
T ss_pred CccccchhhhcccccceeEEeecccccccccccccccccCccccccc
Confidence 3445666665 8899999999999999999999998866543
No 21
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.79 E-value=37 Score=27.54 Aligned_cols=72 Identities=14% Similarity=-0.042 Sum_probs=47.7
Q ss_pred eEEEEecCchhhhHhhhhhhccCCCCCCCCHHHHHHHHhcCCCccCChHHHhhh--Hh------hhhhccCccCChHHHH
Q 042173 22 GIVYLRTNPLDQFITDWQFIPRLRDLEPSRIDEAFERACCGIQSFGPIWEHYFL--FF------IFLKYEDPKRDLTFCV 93 (147)
Q Consensus 22 KiI~i~RnP~D~~vS~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~~------l~v~YEdL~~d~~~~v 93 (147)
-||.-.|+|..|+.|...-- ..+.+.-+-. |..|... +| -++.||-+..|+..+.
T Consensus 136 ~~iv~~r~plsVA~sl~rrD-------~~~leksliL----------w~~h~~~~~~~~~h~~~~~~~yd~~l~d~rqh~ 198 (402)
T COG3551 136 YIIVHRRIPLSVASSLRRRD-------MTELEKSLIL----------WPYHGNKQRIREQHVEEGADIYDVHLSDLRQHP 198 (402)
T ss_pred eEEeecCCcHHHHHHHHhhh-------hhhchHHHHH----------HHHhhHHHHHHHHhccchhhhHHHHHhhHHhCh
Confidence 45666899999998885421 1122221111 3333321 11 5678999999999999
Q ss_pred HHHHHHhCCCccchhhh
Q 042173 94 KRLADFLGCSFSEGEEA 110 (147)
Q Consensus 94 ~~I~~FLG~~~~~~~~~ 110 (147)
.++.+-+|+++.++-++
T Consensus 199 dr~~~~~~~~v~~a~~~ 215 (402)
T COG3551 199 DRLVAAVNQRVGRAPKK 215 (402)
T ss_pred HHHHHHhcCcCCccchh
Confidence 99999999988776633
No 22
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=46.63 E-value=15 Score=28.24 Aligned_cols=45 Identities=20% Similarity=0.419 Sum_probs=30.0
Q ss_pred CCCccCChHHHhhhHh--------hhhhccCccC-----ChHHHHHHHHHHhCCCccc
Q 042173 62 GIQSFGPIWEHYFLFF--------IFLKYEDPKR-----DLTFCVKRLADFLGCSFSE 106 (147)
Q Consensus 62 ~~~~~~~~~~h~~~~~--------l~v~YEdL~~-----d~~~~v~~I~~FLG~~~~~ 106 (147)
|....|....-+..|. ++++.||.-. +-...+.+.+++||+++++
T Consensus 12 G~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 12 GFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 3344455555555555 7889999622 2245677778899999987
No 23
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=45.61 E-value=24 Score=23.36 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=25.8
Q ss_pred hhhhccCccCChHHHHHHHHHHhCCCccchh
Q 042173 78 IFLKYEDPKRDLTFCVKRLADFLGCSFSEGE 108 (147)
Q Consensus 78 l~v~YEdL~~d~~~~v~~I~~FLG~~~~~~~ 108 (147)
.++.++|+. .+..-++++.++.|.+..+..
T Consensus 18 ~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~ 47 (98)
T PF14726_consen 18 GLISEEDLV-KERLLLKQLLEWFNFPPVPMK 47 (98)
T ss_pred ccccHHHHc-cHHHHHHHHHHHhCCCCCccH
Confidence 467899999 999999999999999877643
No 24
>PF12964 DUF3853: Protein of unknown function (DUF3853); InterPro: IPR024363 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=43.06 E-value=17 Score=24.02 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCccchh--hhhhHHHHHHHh
Q 042173 92 CVKRLADFLGCSFSEGE--EANGVIGEISKL 120 (147)
Q Consensus 92 ~v~~I~~FLG~~~~~~~--~~~~~~~~iv~~ 120 (147)
-++.|+.+||++.+-+. ++.|+++.++..
T Consensus 47 G~~GlAklfgcSv~Ta~RiK~sG~id~AI~Q 77 (96)
T PF12964_consen 47 GLKGLAKLFGCSVPTANRIKKSGKIDPAITQ 77 (96)
T ss_pred hHHHHHHHhCCCchhHHHHHhcCCccHHHHH
Confidence 46789999999987655 666777777653
No 25
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=38.96 E-value=22 Score=28.40 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=40.4
Q ss_pred CCccCChHHHhhhHh--------hhhhccCccC--Ch---HHHHHHHHHHhCCCccchh--hh------hhHHHHHHH--
Q 042173 63 IQSFGPIWEHYFLFF--------IFLKYEDPKR--DL---TFCVKRLADFLGCSFSEGE--EA------NGVIGEISK-- 119 (147)
Q Consensus 63 ~~~~~~~~~h~~~~~--------l~v~YEdL~~--d~---~~~v~~I~~FLG~~~~~~~--~~------~~~~~~iv~-- 119 (147)
....|....-+..|. ++++.||.-. .. ...+.+-+++||++++++. +. ...++++++
T Consensus 17 ~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G 96 (299)
T PRK05710 17 PLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRHDAYRAALDRLRAQG 96 (299)
T ss_pred cccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccHHHHHHHHHHHHHCC
Confidence 334454455555554 7899999733 11 2557777889999998533 11 233444444
Q ss_pred -----hcChhHHhhhh
Q 042173 120 -----LCSFDNIKGLE 130 (147)
Q Consensus 120 -----~~sf~~mk~~~ 130 (147)
.||-+.+++..
T Consensus 97 ~aY~C~Ctr~el~~~~ 112 (299)
T PRK05710 97 LVYPCFCSRKEIAAAA 112 (299)
T ss_pred CceecCCCHHHHHHHh
Confidence 47777776543
No 26
>PF04664 OGFr_N: Opioid growth factor receptor (OGFr) conserved region; InterPro: IPR006757 Opioid peptides act as growth factors in neural and non-neural cells and tissues, in addition to serving in neurotransmission/neuromodulation in the nervous system. The opioid growth factor receptor is an integral membrane protein associated with the nucleus. This conserved domain is situated at the N terminus of the member proteins with a series of imperfect repeats lying immediately to its C-terminal [].; GO: 0004872 receptor activity, 0016020 membrane
Probab=37.41 E-value=21 Score=27.06 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=31.5
Q ss_pred hhhhccCccCChHHHHHHHHHHhCCCccchhhhhhHHHHHHHhcChh
Q 042173 78 IFLKYEDPKRDLTFCVKRLADFLGCSFSEGEEANGVIGEISKLCSFD 124 (147)
Q Consensus 78 l~v~YEdL~~d~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv~~~sf~ 124 (147)
.+..-+++.+.....++.+++|.|+.+.++. ..+|.....++
T Consensus 74 ~f~~d~~i~~r~l~s~~lML~FyGi~l~~~~-----~g~v~~~~~~~ 115 (213)
T PF04664_consen 74 AFRSDPEIQKRLLRSYDLMLDFYGIELVDEE-----TGEVIRAENWK 115 (213)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcceeeeccc-----cccccchhhHH
Confidence 4556677888888999999999999998866 55555554443
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=36.62 E-value=68 Score=17.79 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCC-ccchhhhhhHHHHHHHh
Q 042173 90 TFCVKRLADFLGCS-FSEGEEANGVIGEISKL 120 (147)
Q Consensus 90 ~~~v~~I~~FLG~~-~~~~~~~~~~~~~iv~~ 120 (147)
...+++++.-+|+. +++++ ++.++..
T Consensus 7 ~~~~~~~l~~~g~~~~s~~e-----~~~l~~~ 33 (54)
T PF13833_consen 7 REEFRRALSKLGIKDLSEEE-----VDRLFRE 33 (54)
T ss_dssp HHHHHHHHHHTTSSSSCHHH-----HHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHH-----HHHHHHh
Confidence 35677777888999 99988 8887764
No 28
>PF11952 DUF3469: Protein of unknown function (DUF3469); InterPro: IPR021859 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 108 to 439 amino acids in length.
Probab=36.49 E-value=76 Score=20.46 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=24.2
Q ss_pred hhhhccCccCChHHHHHHHH------HHhCCCccchhhhhhHHHHHHHh
Q 042173 78 IFLKYEDPKRDLTFCVKRLA------DFLGCSFSEGEEANGVIGEISKL 120 (147)
Q Consensus 78 l~v~YEdL~~d~~~~v~~I~------~FLG~~~~~~~~~~~~~~~iv~~ 120 (147)
+.-.++++-..+...+..++ .|||+..+++. +++|.+.
T Consensus 21 l~~~~~~~~~~~~d~L~~Ls~v~~N~~fLGC~Yp~~~-----m~~v~em 64 (87)
T PF11952_consen 21 LLRHKDDFPGAPEDRLLCLSQVWANMEFLGCRYPPEV-----MEKVMEM 64 (87)
T ss_pred HHHhHhhcCCchHHHHHHHHHHHHhHHHHhcCCCHHH-----HHHHHHH
Confidence 44456666333333333333 49999999988 8888764
No 29
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=34.70 E-value=55 Score=18.84 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCccchhhhhhHHHHHHHh
Q 042173 93 VKRLADFLGCSFSEGEEANGVIGEISKL 120 (147)
Q Consensus 93 v~~I~~FLG~~~~~~~~~~~~~~~iv~~ 120 (147)
++..+.-||++++++. ...++.+
T Consensus 2 v~~~a~llgL~l~~~~-----r~~V~~n 24 (50)
T PF13318_consen 2 VDQMAALLGLPLDEEW-----RPGVVAN 24 (50)
T ss_pred HHHHHHHcCCCCCHHH-----HHHHHHH
Confidence 4677888999999988 6666653
No 30
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=34.47 E-value=39 Score=25.89 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=22.8
Q ss_pred hhhhccCccCC-----hHHHHHHHHHHhCCCccch
Q 042173 78 IFLKYEDPKRD-----LTFCVKRLADFLGCSFSEG 107 (147)
Q Consensus 78 l~v~YEdL~~d-----~~~~v~~I~~FLG~~~~~~ 107 (147)
+++|.||.-.. -...+.+-+++||+.++++
T Consensus 36 ~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~ 70 (230)
T cd00418 36 FILRIEDTDPERSRPEYVESILEDLKWLGLDWDEG 70 (230)
T ss_pred EEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC
Confidence 78999998442 2566777788999999863
No 31
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=32.45 E-value=42 Score=17.52 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHhCCCcc
Q 042173 89 LTFCVKRLADFLGCSFS 105 (147)
Q Consensus 89 ~~~~v~~I~~FLG~~~~ 105 (147)
+...+.+|++.||++.+
T Consensus 38 ~~~~~~~i~~~~~~~~~ 54 (56)
T smart00530 38 SLETLKKLAKALGVSLD 54 (56)
T ss_pred CHHHHHHHHHHhCCChh
Confidence 67888999999999754
No 32
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=32.13 E-value=35 Score=18.60 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=12.9
Q ss_pred HHhCCCccchhhhhhHHHHHHHh
Q 042173 98 DFLGCSFSEGEEANGVIGEISKL 120 (147)
Q Consensus 98 ~FLG~~~~~~~~~~~~~~~iv~~ 120 (147)
+|.|.|++++. ...++++++.
T Consensus 17 QF~GtPvs~~~--~~~le~aie~ 37 (38)
T PF04036_consen 17 QFVGTPVSPET--AESLEKAIEE 37 (38)
T ss_dssp HHTT-EESTTT--HHHHHHHHHH
T ss_pred HhcCCcCCcch--HHHHHHHHhc
Confidence 68999988754 3335565553
No 33
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=31.51 E-value=53 Score=19.69 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=20.4
Q ss_pred cCccCChHHHHHHHHHHh---CCCccchhhhhhHHHHHHHhcChhH
Q 042173 83 EDPKRDLTFCVKRLADFL---GCSFSEGEEANGVIGEISKLCSFDN 125 (147)
Q Consensus 83 EdL~~d~~~~v~~I~~FL---G~~~~~~~~~~~~~~~iv~~~sf~~ 125 (147)
....+||....+.|..-| |.+.+... +..++....+..
T Consensus 6 ~~v~~~p~~s~~~i~~~l~~~~~~vS~~T-----I~r~L~~~g~~~ 46 (72)
T PF01498_consen 6 RMVRRNPRISAREIAQELQEAGISVSKST-----IRRRLREAGLKK 46 (72)
T ss_dssp ----------HHHHHHHT---T--S-HHH-----HHHHHHHT-EEE
T ss_pred HHHHHCCCCCHHHHHHHHHHccCCcCHHH-----HHHHHHHcCccc
Confidence 346689999999999999 99999988 998888766543
No 34
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=30.84 E-value=45 Score=20.41 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.9
Q ss_pred ccCChH---HHHHHHHHHhCCCccchhhhhhHHHHHHH
Q 042173 85 PKRDLT---FCVKRLADFLGCSFSEGEEANGVIGEISK 119 (147)
Q Consensus 85 L~~d~~---~~v~~I~~FLG~~~~~~~~~~~~~~~iv~ 119 (147)
|.+||. ..++.+..=.|..+++.. +..+.+
T Consensus 26 l~~NPpine~mir~M~~QMG~kpSekq-----i~Q~m~ 58 (64)
T PF03672_consen 26 LKENPPINEKMIRAMMMQMGRKPSEKQ-----IKQMMR 58 (64)
T ss_pred HHHCCCCCHHHHHHHHHHhCCCccHHH-----HHHHHH
Confidence 677875 999999999999999998 887764
No 35
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=30.33 E-value=67 Score=17.73 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=19.0
Q ss_pred hhhhccCccCCh-HHHHHHHHHHhCCCc
Q 042173 78 IFLKYEDPKRDL-TFCVKRLADFLGCSF 104 (147)
Q Consensus 78 l~v~YEdL~~d~-~~~v~~I~~FLG~~~ 104 (147)
.+-++|.=..+| ...+.+|++.||+++
T Consensus 31 ~vs~~e~g~~~~~~~~~~~i~~~lgv~l 58 (58)
T TIGR03070 31 FIRDVENGKPTVRLDKVLRVLDALGLEL 58 (58)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHcCCCC
Confidence 445566555555 667899999999874
No 36
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=29.64 E-value=49 Score=25.56 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=22.7
Q ss_pred hhhhccCccC-----ChHHHHHHHHHHhCCCccc
Q 042173 78 IFLKYEDPKR-----DLTFCVKRLADFLGCSFSE 106 (147)
Q Consensus 78 l~v~YEdL~~-----d~~~~v~~I~~FLG~~~~~ 106 (147)
+++|+||.-. .-...+.+-+++||+.+++
T Consensus 36 ~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~ 69 (238)
T cd00807 36 CNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK 69 (238)
T ss_pred EEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC
Confidence 7899999864 3355677888899999984
No 37
>KOG3955 consensus Heparan sulfate 6-O-sulfotransferase [Cell wall/membrane/envelope biogenesis; Carbohydrate transport and metabolism]
Probab=29.59 E-value=39 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.714 Sum_probs=19.6
Q ss_pred CceEEEEecCchhhhHhhhhhhcc
Q 042173 20 NCGIVYLRTNPLDQFITDWQFIPR 43 (147)
Q Consensus 20 ~aKiI~i~RnP~D~~vS~y~~~~~ 43 (147)
+--+|.++|||.++.+|.+.|..+
T Consensus 158 ~~fY~t~Lr~p~~r~~se~rhvqr 181 (361)
T KOG3955|consen 158 NFHYITILRDPVSRYLSEWRHVQR 181 (361)
T ss_pred ceEEEEEecCchHHHHHHHHHHHh
Confidence 445688899999999999987653
No 38
>PHA01976 helix-turn-helix protein
Probab=29.51 E-value=55 Score=19.16 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=20.6
Q ss_pred hhhhccCccCCh-HHHHHHHHHHhCCCcc
Q 042173 78 IFLKYEDPKRDL-TFCVKRLADFLGCSFS 105 (147)
Q Consensus 78 l~v~YEdL~~d~-~~~v~~I~~FLG~~~~ 105 (147)
.+-+||.=...| ...+.+||++||++++
T Consensus 31 ~v~~~e~g~~~p~~~~l~~ia~~l~v~~~ 59 (67)
T PHA01976 31 LIYDFEADKRLPNLKTLLRLADALGVTLD 59 (67)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 345666655666 5779999999999854
No 39
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=29.07 E-value=49 Score=26.02 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=23.0
Q ss_pred hhhhccCccC-----ChHHHHHHHHHHhCCCccch
Q 042173 78 IFLKYEDPKR-----DLTFCVKRLADFLGCSFSEG 107 (147)
Q Consensus 78 l~v~YEdL~~-----d~~~~v~~I~~FLG~~~~~~ 107 (147)
++++.||.-. +-...+.+-+++||+++++.
T Consensus 35 ~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~ 69 (272)
T TIGR03838 35 WLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGE 69 (272)
T ss_pred EEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCC
Confidence 8899999763 23466777788999999864
No 40
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=28.40 E-value=46 Score=20.88 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=18.3
Q ss_pred ccCccCChHHHHHHHHHHhCCCccc
Q 042173 82 YEDPKRDLTFCVKRLADFLGCSFSE 106 (147)
Q Consensus 82 YEdL~~d~~~~v~~I~~FLG~~~~~ 106 (147)
+-..+.=+-+++.+||++|++.+.+
T Consensus 37 ~gk~k~I~~~tL~~iC~~LeCqpgD 61 (73)
T COG3655 37 TGKVKAIRLSTLEKICKALECQPGD 61 (73)
T ss_pred cCCcceeeHHHHHHHHHHcCCChhh
Confidence 3344445578899999999998654
No 41
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=28.07 E-value=14 Score=22.54 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=19.1
Q ss_pred HHHHHH-HHhCCCccchhhhhhHHHHHHHhcChhHHhh
Q 042173 92 CVKRLA-DFLGCSFSEGEEANGVIGEISKLCSFDNIKG 128 (147)
Q Consensus 92 ~v~~I~-~FLG~~~~~~~~~~~~~~~iv~~~sf~~mk~ 128 (147)
.+.+.+ +.||++.+.+..+.+.++-++..-+++.|.+
T Consensus 17 ~le~fl~~~lgv~~~~a~~~A~~iEH~is~e~~~~l~~ 54 (71)
T PF02742_consen 17 ILEEFLVEVLGVDEEEAEEEACRIEHVISPETIERLCK 54 (71)
T ss_dssp HHHHHHHHTTT--HHHHHHHHHHHGCCS-HHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 344555 6778877665545555555555555555554
No 42
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=27.06 E-value=41 Score=20.07 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhCCCcc
Q 042173 90 TFCVKRLADFLGCSFS 105 (147)
Q Consensus 90 ~~~v~~I~~FLG~~~~ 105 (147)
.+-+++.|++||++.+
T Consensus 45 rg~lr~Ya~~Lgld~~ 60 (62)
T PF13413_consen 45 RGYLRKYARFLGLDPD 60 (62)
T ss_dssp HHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHhCcCcc
Confidence 7889999999999754
No 43
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=26.98 E-value=69 Score=23.26 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=43.5
Q ss_pred EEecCchhhhHhhhhhhccCCCCCCCCHHHHHHHHhcCCC----ccCChHHHhhh----Hh---hhhhccCccCChHHHH
Q 042173 25 YLRTNPLDQFITDWQFIPRLRDLEPSRIDEAFERACCGIQ----SFGPIWEHYFL----FF---IFLKYEDPKRDLTFCV 93 (147)
Q Consensus 25 ~i~RnP~D~~vS~y~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~----~~---l~v~YEdL~~d~~~~v 93 (147)
-.-|+|+|+++=.+.+.... -.+.+.-..|.. +-|-=|..+-. .| --..++++++...+..
T Consensus 41 ~~d~~~~DvLayl~gW~~Ll--------L~W~~~~~~G~~~~fp~~gykWn~lg~Ln~~f~~~y~~~sl~e~~~~l~~s~ 112 (166)
T PF08020_consen 41 GRDRNPRDVLAYLYGWHELL--------LKWEEDEQAGEEVDFPAPGYKWNQLGELNQSFYEKYQDTSLEELKALLKESH 112 (166)
T ss_pred cccCCHHHHHHHHHHHHHHH--------HHHHhhccCCCCCCCCCCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 67899999998777654321 111111122211 11222433322 22 4568999999999999
Q ss_pred HHHHHHhCCCccc
Q 042173 94 KRLADFLGCSFSE 106 (147)
Q Consensus 94 ~~I~~FLG~~~~~ 106 (147)
.+|++.++---++
T Consensus 113 ~~v~~lI~~~sde 125 (166)
T PF08020_consen 113 QKVIALIESFSDE 125 (166)
T ss_pred HHHHHHHHhCcch
Confidence 9999998754333
No 44
>COG5598 Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism]
Probab=26.90 E-value=58 Score=27.98 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=30.4
Q ss_pred HHHhhhHh---hhhhccCccCChHHHHHHHHHHh-CCCccchh
Q 042173 70 WEHYFLFF---IFLKYEDPKRDLTFCVKRLADFL-GCSFSEGE 108 (147)
Q Consensus 70 ~~h~~~~~---l~v~YEdL~~d~~~~v~~I~~FL-G~~~~~~~ 108 (147)
--|-.+|. |...||-|+-|-. .+..++.|| |++++++.
T Consensus 390 v~haAGwleggL~~s~Ekli~D~d-~l~~~~~~l~gi~vse~~ 431 (526)
T COG5598 390 VYHAAGWLEGGLTFSYEKLIIDND-ILGMVQKFLRGIDVSEEA 431 (526)
T ss_pred eeehhhhhhccchhhHHHHhhhHH-HHHHHHHHhcCCCCCchh
Confidence 34667887 9999999999964 577788887 68988876
No 45
>PLN00135 malate dehydrogenase
Probab=26.34 E-value=65 Score=25.74 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=18.2
Q ss_pred CCCceEEEEecCchhhhHhhhhhhc
Q 042173 18 TSNCGIVYLRTNPLDQFITDWQFIP 42 (147)
Q Consensus 18 ~p~aKiI~i~RnP~D~~vS~y~~~~ 42 (147)
.|++++|.+. ||.|++........
T Consensus 99 ~p~aivivvs-NPvDv~t~~~~~~s 122 (309)
T PLN00135 99 APDCKVLVVA-NPANTNALILKEFA 122 (309)
T ss_pred CCCeEEEEeC-CcHHHHHHHHHHHc
Confidence 4688877665 99999998765544
No 46
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=26.13 E-value=62 Score=18.72 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=18.1
Q ss_pred hhhccCccCCh-HHHHHHHHHHhCCCccc
Q 042173 79 FLKYEDPKRDL-TFCVKRLADFLGCSFSE 106 (147)
Q Consensus 79 ~v~YEdL~~d~-~~~v~~I~~FLG~~~~~ 106 (147)
+-.||.=..+| ...+.+||+.||++++.
T Consensus 29 i~~~e~g~~~~~~~~l~~i~~~~~v~~~~ 57 (64)
T PF12844_consen 29 ISKIENGKRKPSVSTLKKIAEALGVSLDE 57 (64)
T ss_dssp HHHHHTTSS--BHHHHHHHHHHHTS-HHH
T ss_pred HHHHHCCCcCCCHHHHHHHHHHhCCCHHH
Confidence 34555555566 68889999999998653
No 47
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=25.81 E-value=59 Score=28.02 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=20.9
Q ss_pred hhhhccCcc--CChHHHHHHH---HHHhCCCccc
Q 042173 78 IFLKYEDPK--RDLTFCVKRL---ADFLGCSFSE 106 (147)
Q Consensus 78 l~v~YEdL~--~d~~~~v~~I---~~FLG~~~~~ 106 (147)
++++.||.- +...+.+..| +++||+++++
T Consensus 39 fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe 72 (513)
T PRK14895 39 FLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNG 72 (513)
T ss_pred EEEEECCCCccccChHHHHHHHHHHHHcCCCCCC
Confidence 789999883 3344445545 8899999985
No 48
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=25.40 E-value=19 Score=23.84 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=21.8
Q ss_pred hHh-hhhhccCccCChHHHHHHHHHHh
Q 042173 75 LFF-IFLKYEDPKRDLTFCVKRLADFL 100 (147)
Q Consensus 75 ~~~-l~v~YEdL~~d~~~~v~~I~~FL 100 (147)
+|. +-+.++|+..+|...+.+|.+.|
T Consensus 81 Gw~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 81 GFRVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred CCEEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 444 77889999999999999998765
No 49
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=25.39 E-value=92 Score=22.55 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhCCCccchhhhhhHHHHHHHhc
Q 042173 89 LTFCVKRLADFLGCSFSEGEEANGVIGEISKLC 121 (147)
Q Consensus 89 ~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv~~~ 121 (147)
+...+..|..+||...+++. +.++++.-
T Consensus 38 ~~~el~~ilr~lg~~~s~~e-----i~~l~~~~ 65 (160)
T COG5126 38 DRNELGKILRSLGFNPSEAE-----INKLFEEI 65 (160)
T ss_pred cHHHHHHHHHHcCCCCcHHH-----HHHHHHhc
Confidence 46778889999999998888 88877643
No 50
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein. gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.
Probab=23.99 E-value=94 Score=20.04 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=23.5
Q ss_pred hhhhccCccCCh-HHHHHHHHHHhCCCcc
Q 042173 78 IFLKYEDPKRDL-TFCVKRLADFLGCSFS 105 (147)
Q Consensus 78 l~v~YEdL~~d~-~~~v~~I~~FLG~~~~ 105 (147)
.+-++|.=..+| ..++.+||+.||++++
T Consensus 59 tLs~iE~g~~~Ps~~tL~kI~~aLgi~l~ 87 (89)
T TIGR02684 59 SLYKALSGKGNPTFDTILKVTKALGLKLT 87 (89)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCcee
Confidence 667788777777 8899999999999875
No 51
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=23.76 E-value=67 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=21.8
Q ss_pred hhhhccCccCCh-------HHHHHHHHHHhCCCccch
Q 042173 78 IFLKYEDPKRDL-------TFCVKRLADFLGCSFSEG 107 (147)
Q Consensus 78 l~v~YEdL~~d~-------~~~v~~I~~FLG~~~~~~ 107 (147)
+++++||.-..- ...+.+-+++||+++++.
T Consensus 36 ~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~ 72 (240)
T cd09287 36 FILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEV 72 (240)
T ss_pred EEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCc
Confidence 788999974332 336777788999988754
No 52
>PF15382 DUF4609: Domain of unknown function (DUF4609)
Probab=23.48 E-value=56 Score=19.96 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=24.2
Q ss_pred EEEecCchhhhHhhhhhhccCCCCCCCCHHHHHHHHhcCCCccCChHHHhhh
Q 042173 24 VYLRTNPLDQFITDWQFIPRLRDLEPSRIDEAFERACCGIQSFGPIWEHYFL 75 (147)
Q Consensus 24 I~i~RnP~D~~vS~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 75 (147)
|.|.|---+.++|+-- ...... .-++....||+|+.|-.+
T Consensus 19 IiITraS~ETL~S~ss----~~seeQ--------rTI~E~~dWGpy~RHRnP 58 (70)
T PF15382_consen 19 IIITRASNETLISYSS----SGSEEQ--------RTIREQADWGPYYRHRNP 58 (70)
T ss_pred EEEEecCccceeeccC----CCchhh--------hhhhccccccchhccCCc
Confidence 6689999999999821 111111 122335578888887543
No 53
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=23.01 E-value=80 Score=22.51 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHhCCCccchhhhhhHHHHHH
Q 042173 88 DLTFCVKRLADFLGCSFSEGEEANGVIGEIS 118 (147)
Q Consensus 88 d~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv 118 (147)
|..+.++.+++++|+++....-+-+.+++++
T Consensus 133 ~~~~~~~~~a~~~~l~~~~~~g~l~~l~~ll 163 (166)
T PF07796_consen 133 DFEEKVREFAEFLGLPIEEIPGDLDLLEKLL 163 (166)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHH
Confidence 4589999999999999887654555565554
No 54
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=21.78 E-value=1.3e+02 Score=17.69 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=19.8
Q ss_pred hhhhccCccCChHHHHHHHHHHhCC
Q 042173 78 IFLKYEDPKRDLTFCVKRLADFLGC 102 (147)
Q Consensus 78 l~v~YEdL~~d~~~~v~~I~~FLG~ 102 (147)
+.|-+||...++..-+++=++||--
T Consensus 18 ~siE~ED~~~~~~~G~~~a~~~lr~ 42 (55)
T PF07582_consen 18 LSIEHEDALMDPEEGAREAAAFLRK 42 (55)
T ss_dssp EEE---STTTSHHHHHHHHHHHHHT
T ss_pred EEEEeecCCCCHHHHHHHHHHHHHH
Confidence 7789999999999999999999853
No 55
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=21.59 E-value=1.4e+02 Score=18.69 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=16.2
Q ss_pred HHHHhCCCccchhhhhhHHHHHHHhc
Q 042173 96 LADFLGCSFSEGEEANGVIGEISKLC 121 (147)
Q Consensus 96 I~~FLG~~~~~~~~~~~~~~~iv~~~ 121 (147)
+..|+|-++++++ ++++|+.+
T Consensus 58 l~~f~~~di~~~~-----L~~ii~~A 78 (79)
T PF14821_consen 58 LSPFLGDDIPEEE-----LKEIIEKA 78 (79)
T ss_dssp HHHHCCCCS-HHH-----HHHHHHHH
T ss_pred HHHHHccCCCHHH-----HHHHHHHH
Confidence 4468889999999 99998764
No 56
>PLN00064 photosystem II protein Psb27; Provisional
Probab=21.09 E-value=1.4e+02 Score=21.70 Aligned_cols=27 Identities=4% Similarity=0.071 Sum_probs=22.7
Q ss_pred ccCccCChHHHHHHHHHHhCCCccchh
Q 042173 82 YEDPKRDLTFCVKRLADFLGCSFSEGE 108 (147)
Q Consensus 82 YEdL~~d~~~~v~~I~~FLG~~~~~~~ 108 (147)
=+|..+|....+..+-+-|.++-++..
T Consensus 63 ~g~Y~~DT~aVi~~lr~tI~L~~ddp~ 89 (166)
T PLN00064 63 DEEYVKETKDVIGKVRSTINMDKTDPN 89 (166)
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcc
Confidence 467789999999999999999866654
No 57
>PRK09767 hypothetical protein; Provisional
Probab=21.07 E-value=29 Score=23.67 Aligned_cols=27 Identities=4% Similarity=-0.103 Sum_probs=23.4
Q ss_pred hhhhccCccCChHHHHHHHHHHhCCCc
Q 042173 78 IFLKYEDPKRDLTFCVKRLADFLGCSF 104 (147)
Q Consensus 78 l~v~YEdL~~d~~~~v~~I~~FLG~~~ 104 (147)
+-+..+|+..|+.+++..|.+.|+...
T Consensus 88 lRf~n~dV~~~~~~Vl~~I~~~l~~~~ 114 (117)
T PRK09767 88 LRFWNNEIDCNEEAVLEIILQELNRRS 114 (117)
T ss_pred EEEEHHHHHhCHHHHHHHHHHHHhccC
Confidence 667788999999999999999998653
No 58
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=20.62 E-value=84 Score=17.41 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=18.8
Q ss_pred hhhccCccCCh-HHHHHHHHHHhCCCcc
Q 042173 79 FLKYEDPKRDL-TFCVKRLADFLGCSFS 105 (147)
Q Consensus 79 ~v~YEdL~~d~-~~~v~~I~~FLG~~~~ 105 (147)
+-+||-=...| ...+.+|+..||++++
T Consensus 26 i~~~~~g~~~~~~~~~~~ia~~l~~~~~ 53 (55)
T PF01381_consen 26 ISRIENGKRNPSLDTLKKIAKALGVSPE 53 (55)
T ss_dssp HHHHHTTSSTSBHHHHHHHHHHHTSEHH
T ss_pred hHHHhcCCCCCCHHHHHHHHHHHCCCHH
Confidence 33455555555 7888899999998754
No 59
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.43 E-value=1.1e+02 Score=24.29 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.6
Q ss_pred cCChHHHHHHHHHHhCCCccchhhhhhHHHHHH
Q 042173 86 KRDLTFCVKRLADFLGCSFSEGEEANGVIGEIS 118 (147)
Q Consensus 86 ~~d~~~~v~~I~~FLG~~~~~~~~~~~~~~~iv 118 (147)
-+|..++++.++.|||.++.+.+ +.+..
T Consensus 102 TADl~At~~A~A~~l~~~l~es~-----iakLc 129 (293)
T COG4542 102 TADLVATARATARFLGRELRESE-----IAKLC 129 (293)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHH-----HHHHH
Confidence 46889999999999999999987 66653
No 60
>PLN02627 glutamyl-tRNA synthetase
Probab=20.38 E-value=81 Score=27.38 Aligned_cols=44 Identities=25% Similarity=0.423 Sum_probs=30.0
Q ss_pred CccCChHHHhhhHh--------hhhhccCcc-----CChHHHHHHHHHHhCCCccch
Q 042173 64 QSFGPIWEHYFLFF--------IFLKYEDPK-----RDLTFCVKRLADFLGCSFSEG 107 (147)
Q Consensus 64 ~~~~~~~~h~~~~~--------l~v~YEdL~-----~d~~~~v~~I~~FLG~~~~~~ 107 (147)
...|.-..-+..|. +++|.||.- .+-...+.+-+++||+++++.
T Consensus 58 LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDeg 114 (535)
T PLN02627 58 LHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEG 114 (535)
T ss_pred ccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcC
Confidence 34444444455554 889999976 344556777788999999864
Done!