Query 042174
Match_columns 254
No_of_seqs 324 out of 1271
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3.8E-26 1.3E-30 166.9 5.9 61 97-157 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 89.0 0.24 8.2E-06 37.3 2.7 29 93-124 3-32 (77)
3 1u3e_M HNH homing endonuclease 76.5 0.32 1.1E-05 40.2 -1.3 38 98-139 109-146 (174)
4 1z1b_A Integrase; protein-DNA 74.9 2.6 9E-05 36.3 4.1 41 100-145 15-55 (356)
5 1b69_A Protein (integrase); in 39.0 27 0.00093 25.5 3.4 29 94-124 8-36 (69)
6 1x60_A Sporulation-specific N- 31.3 20 0.00069 25.1 1.6 23 121-143 46-68 (79)
7 3jtz_A Integrase; four strande 26.3 1.3E+02 0.0044 22.1 5.4 44 101-145 28-75 (88)
8 1uta_A FTSN, MSGA, cell divisi 26.1 29 0.001 24.6 1.7 23 121-143 46-68 (81)
9 3bid_A UPF0339 protein NMB1088 17.9 2.4E+02 0.0081 19.9 5.1 35 101-137 5-40 (64)
10 2ftc_I Mitochondrial ribosomal 17.8 1.7E+02 0.0058 22.9 4.8 35 108-146 79-114 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=3.8e-26 Score=166.88 Aligned_cols=61 Identities=75% Similarity=1.280 Sum_probs=58.6
Q ss_pred ceeEEEECCCCcEEEEEeeCCCCCeEEecCCCCcHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 042174 97 SYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGSLATLNFPAD 157 (254)
Q Consensus 97 ~YRGV~~r~~GKW~A~Ir~~~~~Gkrv~LGtFdT~EEAArAYD~AA~~~~G~~A~lNFp~~ 157 (254)
+||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|++.++|..|.||||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999887799999999999999999999999999999999999975
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=89.02 E-value=0.24 Score=37.34 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=23.3
Q ss_pred CCCCceeEEEECCC-CcEEEEEeeCCCCCeEEe
Q 042174 93 TSNKSYRGVRRRPW-GKFAAEIRDSTRNGVRVW 124 (254)
Q Consensus 93 ~~~S~YRGV~~r~~-GKW~A~Ir~~~~~Gkrv~ 124 (254)
..+|+|.||++.+. +.|.|.-.+ +|+|..
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrs 32 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRRS 32 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE---TTEEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec---CCeEee
Confidence 35799999998877 999999988 566643
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=76.47 E-value=0.32 Score=40.22 Aligned_cols=38 Identities=8% Similarity=-0.109 Sum_probs=28.5
Q ss_pred eeEEEECCCCcEEEEEeeCCCCCeEEecCCCCcHHHHHHHHH
Q 042174 98 YRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYD 139 (254)
Q Consensus 98 YRGV~~r~~GKW~A~Ir~~~~~Gkrv~LGtFdT~EEAArAYD 139 (254)
++||.+...++|.|.|.. + +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence 567755223678899987 3 4567999999999999863
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=74.95 E-value=2.6 Score=36.32 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=30.5
Q ss_pred EEEECCCCcEEEEEeeCCCCCeEEecCCCCcHHHHHHHHHHHHHHh
Q 042174 100 GVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSM 145 (254)
Q Consensus 100 GV~~r~~GKW~A~Ir~~~~~Gkrv~LGtFdT~EEAArAYD~AA~~~ 145 (254)
||++++.|.|..+... +|+++.+|. |..||..+..++...+
T Consensus 15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5777888999987654 689999996 8888877666554443
No 5
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=39.00 E-value=27 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCCceeEEEECCCCcEEEEEeeCCCCCeEEe
Q 042174 94 SNKSYRGVRRRPWGKFAAEIRDSTRNGVRVW 124 (254)
Q Consensus 94 ~~S~YRGV~~r~~GKW~A~Ir~~~~~Gkrv~ 124 (254)
+..-+.|+++++.|+|++.+.+. .|++.+
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d~--~Gkr~~ 36 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYIDS--FGEPQF 36 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEECT--TSSEEE
T ss_pred CCccCCCeEEccCCcEEEEEEcC--CCCEEE
Confidence 34567899999999999999985 355543
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.32 E-value=20 Score=25.07 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=18.9
Q ss_pred eEEecCCCCcHHHHHHHHHHHHH
Q 042174 121 VRVWLGTFDSAEAAALAYDQAAF 143 (254)
Q Consensus 121 krv~LGtFdT~EEAArAYD~AA~ 143 (254)
-||++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999988766544
No 7
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=26.32 E-value=1.3e+02 Score=22.09 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=28.1
Q ss_pred EEECCCC--cEEEEEeeCCCCCeEEecCCCC--cHHHHHHHHHHHHHHh
Q 042174 101 VRRRPWG--KFAAEIRDSTRNGVRVWLGTFD--SAEAAALAYDQAAFSM 145 (254)
Q Consensus 101 V~~r~~G--KW~A~Ir~~~~~Gkrv~LGtFd--T~EEAArAYD~AA~~~ 145 (254)
++-.+.| .|.-+.+.. .+.+++-||.|. |.++|...-+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~-Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRIS-GKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEET-TEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeC-CeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4445554 488777762 223568899997 5777777666655544
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=26.10 E-value=29 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.0
Q ss_pred eEEecCCCCcHHHHHHHHHHHHH
Q 042174 121 VRVWLGTFDSAEAAALAYDQAAF 143 (254)
Q Consensus 121 krv~LGtFdT~EEAArAYD~AA~ 143 (254)
-||.+|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999888766544
No 9
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=17.85 E-value=2.4e+02 Score=19.85 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=27.7
Q ss_pred EEECCCCcEEEEEeeCCCCCeEEecCC-CCcHHHHHHH
Q 042174 101 VRRRPWGKFAAEIRDSTRNGVRVWLGT-FDSAEAAALA 137 (254)
Q Consensus 101 V~~r~~GKW~A~Ir~~~~~Gkrv~LGt-FdT~EEAArA 137 (254)
|.+...|+|.-++... ||..|--+- |.+..+|..+
T Consensus 5 i~~~~~G~frfrLka~--NGevI~sSe~Y~sk~~a~~g 40 (64)
T 3bid_A 5 IYKDAKGEYRWRLKAA--NHEIIAQGEGYTSKQNCQHA 40 (64)
T ss_dssp EEECTTSCEEEEEECT--TSCEEEECCCBSCHHHHHHH
T ss_pred EEECCCCCEEEEEEeC--CCCEEEECCCcCCHHHHHHH
Confidence 4566679999999874 788887666 9999888766
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=17.76 E-value=1.7e+02 Score=22.91 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=27.0
Q ss_pred cEEEEEeeCCCCCeE-EecCCCCcHHHHHHHHHHHHHHhc
Q 042174 108 KFAAEIRDSTRNGVR-VWLGTFDSAEAAALAYDQAAFSMR 146 (254)
Q Consensus 108 KW~A~Ir~~~~~Gkr-v~LGtFdT~EEAArAYD~AA~~~~ 146 (254)
-|+|.|.. |+- +-++...+++.|..|..+|+.++=
T Consensus 79 ~wva~Vk~----G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKA----GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECC----CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 39999975 444 445555889999999999999873
Done!