AmiGO: BLAST Results


BLAST match view associations BLAST with GGPS1 GGPS1 GGPS1 geranylgeranyl pyrophosphate synthase 1	protein from Arabidopsis thaliana	1.0e-29
BLAST match view associations BLAST with AT3G29430 AT3G29430 AT3G29430	protein from Arabidopsis thaliana	7.1e-29
BLAST match view associations BLAST with GGPS1 GGPS1 GGPS1 Geranylgeranyl pyrophosphate synthase, chloroplastic	protein from Capsicum annuum	9.1e-29
BLAST match view associations BLAST with AT3G14530 AT3G14530 AT3G14530	protein from Arabidopsis thaliana	9.1e-29
BLAST match view associations BLAST with GGPS2 GGPS2 GGPS2 AT2G23800	protein from Arabidopsis thaliana	3.5e-27
BLAST match view associations BLAST with AT3G20160 AT3G20160 AT3G20160	protein from Arabidopsis thaliana	4.5e-27
BLAST match view associations BLAST with GGPS4 GGPS4 GGPS4 AT2G18640	protein from Arabidopsis thaliana	4.5e-27
BLAST match view associations BLAST with GGPS6 GGPS6 GGPS6 geranylgeranyl pyrophosphate synthase 6	protein from Arabidopsis thaliana	4.0e-26
BLAST match view associations BLAST with GSU1765 GSU1765 GSU1765 Trans-isoprenyl diphosphate synthase	protein from Geobacter sulfurreducens PCA	7.8e-23
BLAST match view associations BLAST with GSU_1765 GSU_1765 GSU_1765 geranyltranstransferase	protein from Geobacter sulfurreducens PCA	7.8e-23
BLAST match view associations BLAST with ispA ispA ispA Geranyltranstransferase	protein from Bacillus anthracis	4.4e-20
BLAST match view associations BLAST with BA_4402 BA_4402 BA_4402 geranyltranstransferase	protein from Bacillus anthracis str. Ames	4.4e-20
BLAST match view associations BLAST with ispA ispA ispA Geranyltranstransferase	protein from Pseudomonas protegens Pf-5	5.8e-18
BLAST match view associations BLAST with ispA ispA ispA geranyl diphosphate synthase / farnesyl diphosphate synthase	protein from Escherichia coli K-12	9.5e-18
BLAST match view associations BLAST with CHY_1988 CHY_1988 CHY_1988 Geranyltranstransferase	protein from Carboxydothermus hydrogenoformans Z-2901	2.0e-15
BLAST match view associations BLAST with CHY_1988 CHY_1988 CHY_1988 geranyltranstransferase	protein from Carboxydothermus hydrogenoformans Z-2901	2.0e-15
BLAST match view associations BLAST with CPS_1089 CPS_1089 CPS_1089 geranyltranstransferase	protein from Colwellia psychrerythraea 34H	1.2e-14
BLAST match view associations BLAST with VC_0890 VC_0890 VC_0890 Geranyltranstransferase	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.4e-14
BLAST match view associations BLAST with VC_0890 VC_0890 VC_0890 geranyltranstransferase	protein from Vibrio cholerae O1 biovar El Tor	2.4e-14
BLAST match view associations BLAST with SO_1526 SO_1526 SO_1526 geranyltranstransferase	protein from Shewanella oneidensis MR-1	1.1e-11
BLAST match view associations BLAST with ispA ispA ispA Farnesyl diphosphate synthase	protein from Ruegeria pomeroyi DSS-3	1.8e-10
BLAST match view associations BLAST with SPO_0248 SPO_0248 SPO_0248 farnesyl diphosphate synthase	protein from Ruegeria pomeroyi DSS-3	1.8e-10
BLAST match view associations BLAST with ispA ispA ispA Geranyltranstransferase	protein from Hyphomonas neptunium ATCC 15444	5.6e-10
BLAST match view associations BLAST with CJE_1816 CJE_1816 CJE_1816 geranyltranstransferase	protein from Campylobacter jejuni RM1221	1.0e-09
BLAST match view associations BLAST with GGR GGR GGR geranylgeranyl reductase	protein from Arabidopsis thaliana	4.1e-08
BLAST match view associations BLAST with CPS_4513 CPS_4513 CPS_4513 octaprenyl-diphosphate synthase	protein from Colwellia psychrerythraea 34H	5.6e-05
BLAST match view associations BLAST with SO_3653 SO_3653 SO_3653 octaprenyl-diphosphate synthase	protein from Shewanella oneidensis MR-1	5.7e-05
BLAST match view associations BLAST with CBU_1255 CBU_1255 CBU_1255 Dimethylallyltransferase	protein from Coxiella burnetii RSA 493	0.00044
BLAST match view associations BLAST with CBU_1255 CBU_1255 CBU_1255 geranyltranstransferase, putative	protein from Coxiella burnetii RSA 493	0.00044

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042175
        (170 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2115450 - symbol:GGPS1 "geranylgeranyl pyropho...   329  1.0e-29   1
TAIR|locus:2093832 - symbol:AT3G29430 species:3702 "Arabi...   321  7.1e-29   1
UNIPROTKB|P80042 - symbol:GGPS1 "Geranylgeranyl pyrophosp...   320  9.1e-29   1
TAIR|locus:2089626 - symbol:AT3G14530 "AT3G14530" species...   320  9.1e-29   1
TAIR|locus:2046283 - symbol:AT2G18620 species:3702 "Arabi...   317  1.9e-28   1
TAIR|locus:2079028 - symbol:AT3G32040 species:3702 "Arabi...   312  6.4e-28   1
TAIR|locus:2048993 - symbol:GGPS2 "geranylgeranyl pyropho...   305  3.5e-27   1
TAIR|locus:2087550 - symbol:AT3G20160 species:3702 "Arabi...   304  4.5e-27   1
TAIR|locus:2046258 - symbol:GGPS4 "geranylgeranyl pyropho...   304  4.5e-27   1
TAIR|locus:2010182 - symbol:GGPS6 "geranylgeranyl pyropho...   295  4.0e-26   1
UNIPROTKB|Q74CA9 - symbol:GSU1765 "Trans-isoprenyl diphos...   264  7.8e-23   1
TIGR_CMR|GSU_1765 - symbol:GSU_1765 "geranyltranstransfer...   264  7.8e-23   1
UNIPROTKB|Q81M53 - symbol:ispA "Geranyltranstransferase" ...   238  4.4e-20   1
TIGR_CMR|BA_4402 - symbol:BA_4402 "geranyltranstransferas...   238  4.4e-20   1
UNIPROTKB|Q4K5A6 - symbol:ispA "Geranyltranstransferase" ...   218  5.8e-18   1
UNIPROTKB|P22939 - symbol:ispA "geranyl diphosphate synth...   216  9.5e-18   1
UNIPROTKB|Q3AAM7 - symbol:CHY_1988 "Geranyltranstransfera...   194  2.0e-15   1
TIGR_CMR|CHY_1988 - symbol:CHY_1988 "geranyltranstransfer...   194  2.0e-15   1
TIGR_CMR|CPS_1089 - symbol:CPS_1089 "geranyltranstransfer...   188  1.2e-14   1
UNIPROTKB|Q9KTL2 - symbol:VC_0890 "Geranyltranstransferas...   185  2.4e-14   1
TIGR_CMR|VC_0890 - symbol:VC_0890 "geranyltranstransferas...   185  2.4e-14   1
TIGR_CMR|SO_1526 - symbol:SO_1526 "geranyltranstransferas...   162  1.1e-11   1
UNIPROTKB|Q5LX41 - symbol:ispA "Farnesyl diphosphate synt...   151  1.8e-10   1
TIGR_CMR|SPO_0248 - symbol:SPO_0248 "farnesyl diphosphate...   151  1.8e-10   1
UNIPROTKB|Q0C153 - symbol:ispA "Geranyltranstransferase" ...   147  5.6e-10   1
TIGR_CMR|CJE_1816 - symbol:CJE_1816 "geranyltranstransfer...   144  1.0e-09   1
TAIR|locus:2121149 - symbol:GGR "geranylgeranyl reductase...   111  4.1e-08   2
TIGR_CMR|CPS_4513 - symbol:CPS_4513 "octaprenyl-diphospha...   109  5.6e-05   1
TIGR_CMR|SO_3653 - symbol:SO_3653 "octaprenyl-diphosphate...   109  5.7e-05   1
UNIPROTKB|Q83C74 - symbol:CBU_1255 "Dimethylallyltransfer...   103  0.00044   1
TIGR_CMR|CBU_1255 - symbol:CBU_1255 "geranyltranstransfer...   103  0.00044   1


>TAIR|locus:2115450 [details] [associations]
            symbol:GGPS1 "geranylgeranyl pyrophosphate synthase 1"
            species:3702 "Arabidopsis thaliana" [GO:0008299 "isoprenoid
            biosynthetic process" evidence=IEA;TAS] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0004311 "farnesyltranstransferase activity"
            evidence=IDA] [GO:0009513 "etioplast" evidence=IDA] [GO:0004161
            "dimethylallyltranstransferase activity" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0019761 "glucosinolate
            biosynthetic process" evidence=RCA] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 UniPathway:UPA00259
            UniPathway:UPA00260 UniPathway:UPA00389 GO:GO:0005739 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0016020
            Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0046872
            EMBL:AL161590 GO:GO:0016117 EMBL:Z99708 eggNOG:COG0142
            GO:GO:0008299 InterPro:IPR017446 PANTHER:PTHR12001 GO:GO:0004311
            HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337 GO:GO:0045337
            GO:GO:0033384 GO:GO:0033386 EMBL:L25813 IPI:IPI00516537 PIR:F85434
            RefSeq:NP_195399.1 UniGene:At.304 ProteinModelPortal:P34802
            SMR:P34802 STRING:P34802 PaxDb:P34802 PRIDE:P34802
            EnsemblPlants:AT4G36810.1 GeneID:829834 KEGG:ath:AT4G36810
            TAIR:At4g36810 InParanoid:P34802 KO:K13789 OMA:MEFAHAV
            PhylomeDB:P34802 ProtClustDB:CLSN2915918
            BioCyc:ARA:AT4G36810-MONOMER BioCyc:MetaCyc:AT4G36810-MONOMER
            BRENDA:2.5.1.29 Genevestigator:P34802 GermOnline:AT4G36810
            GO:GO:0009513 GO:GO:0051501 Uniprot:P34802
        Length = 371

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 67/167 (40%), Positives = 104/167 (62%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEAX 62
             VSP R++RA+ E++ AIG+EGL AGQ++DISSEG    DV L  L FIH HK+   +EA 
Sbjct:   205 VSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEAS 264

Query:    63 XXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKATY 121
                             R+R + +C+G+ +Q+ +DI+DV   S E  +T G+D++  K TY
Sbjct:   265 AVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTY 324

Query:   122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             PK++G+++S+ +A++L  +A+ +L  FD  K APL  L N++    N
Sbjct:   325 PKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371


>TAIR|locus:2093832 [details] [associations]
            symbol:AT3G29430 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008299 "isoprenoid
            biosynthetic process" evidence=IEA] [GO:0006744 "ubiquinone
            biosynthetic process" evidence=RCA] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 UniPathway:UPA00259
            UniPathway:UPA00260 UniPathway:UPA00389 GO:GO:0005739 GO:GO:0009507
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016020
            Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0046872
            EMBL:AP001309 GO:GO:0016117 eggNOG:COG0142 InterPro:IPR017446
            PANTHER:PTHR12001 GO:GO:0004311 HOGENOM:HOG000009101 GO:GO:0004161
            GO:GO:0004337 GO:GO:0045337 GO:GO:0033384 GO:GO:0033386 KO:K13789
            GO:GO:0051501 ProtClustDB:CLSN2682670 EMBL:DQ056612 IPI:IPI00540813
            RefSeq:NP_189589.1 UniGene:At.53571 ProteinModelPortal:Q9LIA0
            SMR:Q9LIA0 STRING:Q9LIA0 EnsemblPlants:AT3G29430.1 GeneID:822604
            KEGG:ath:AT3G29430 TAIR:At3g29430 InParanoid:Q9LIA0 OMA:NDRNSAF
            PhylomeDB:Q9LIA0 Genevestigator:Q9LIA0 Uniprot:Q9LIA0
        Length = 357

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 63/167 (37%), Positives = 104/167 (62%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEAX 62
             V+P+R++RA++E++ AIG++GL AGQ+ D+ S+G    DV L  L FIH HK+   +EA 
Sbjct:   191 VAPERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLNPDDVGLERLEFIHLHKTAALLEAA 250

Query:    63 XXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATY 121
                             ++R Y +C+G+ +Q+ +DI+DV  S  E  +T G+D++ GK TY
Sbjct:   251 AVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTESTKELGKTAGKDVMAGKLTY 310

Query:   122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             P+L+G++ S+  A++L  +A ++L  FD  KAAPL  L +++    N
Sbjct:   311 PRLIGLERSREVAEKLRREAAEQLLGFDSDKAAPLVALASYIACRHN 357


>UNIPROTKB|P80042 [details] [associations]
            symbol:GGPS1 "Geranylgeranyl pyrophosphate synthase,
            chloroplastic" species:4072 "Capsicum annuum" [GO:0004161
            "dimethylallyltranstransferase activity" evidence=IDA] [GO:0004311
            "farnesyltranstransferase activity" evidence=IDA] [GO:0004337
            "geranyltranstransferase activity" evidence=IDA] [GO:0006720
            "isoprenoid metabolic process" evidence=IDA] [GO:0009536 "plastid"
            evidence=IDA] InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444
            PROSITE:PS00723 UniPathway:UPA00259 UniPathway:UPA00260
            UniPathway:UPA00389 GO:GO:0009507 GO:GO:0009536 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0046872 GO:GO:0016117
            InterPro:IPR017446 PANTHER:PTHR12001 GO:GO:0004311 GO:GO:0004161
            GO:GO:0004337 GO:GO:0045337 GO:GO:0033384 GO:GO:0033386
            GO:GO:0006720 EMBL:X80267 PIR:S53722 ProteinModelPortal:P80042
            SMR:P80042 BioCyc:MetaCyc:MONOMER-12171 Uniprot:P80042
        Length = 369

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 65/168 (38%), Positives = 102/168 (60%)

Query:     3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEA 61
             T  V+P R++ A+ E++ +IG+EGL AGQ+ DI   G   VSL  L FIH HK+   +E+
Sbjct:   202 TAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLES 261

Query:    62 XXXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKAT 120
                              ++R + +C+G+ +Q+ +DI+DV   S E  +T G+D++  K T
Sbjct:   262 SVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTT 321

Query:   121 YPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             YPKL+G++++K +A EL  +AKQ+L  FD  KAAPL  L +++   DN
Sbjct:   322 YPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369


>TAIR|locus:2089626 [details] [associations]
            symbol:AT3G14530 "AT3G14530" species:3702 "Arabidopsis
            thaliana" [GO:0004311 "farnesyltranstransferase activity"
            evidence=ISS] [GO:0008299 "isoprenoid biosynthetic process"
            evidence=IEA;ISS] InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444
            PROSITE:PS00723 UniPathway:UPA00259 UniPathway:UPA00260
            UniPathway:UPA00389 GO:GO:0005739 GO:GO:0009507 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0016020 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0046872 GO:GO:0016117
            eggNOG:COG0142 InterPro:IPR017446 PANTHER:PTHR12001 GO:GO:0004311
            HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337 GO:GO:0045337
            GO:GO:0033384 GO:GO:0033386 EMBL:AB023038 KO:K13789 GO:GO:0051501
            EMBL:BT010463 IPI:IPI00517639 RefSeq:NP_188071.1 UniGene:At.48659
            ProteinModelPortal:Q9LUE1 SMR:Q9LUE1 STRING:Q9LUE1
            EnsemblPlants:AT3G14530.1 GeneID:820678 KEGG:ath:AT3G14530
            TAIR:At3g14530 InParanoid:Q9LUE1 PhylomeDB:Q9LUE1
            ProtClustDB:CLSN2682670 Genevestigator:Q9LUE1 Uniprot:Q9LUE1
        Length = 360

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 64/167 (38%), Positives = 107/167 (64%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSE--GKD-VSLSELNFIHRHKSEKFVEAX 62
             V+P++++RA+VE++ AIG+ GL AGQ++D++SE    D V L  L FIH HK+   +EA 
Sbjct:   194 VAPEKMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAA 253

Query:    63 XXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATY 121
                             ++R Y +C+G+ +Q+ +DI+DV  S E   +T G+D++ GK TY
Sbjct:   254 AVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTY 313

Query:   122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             P+L+G++ S+  A++L  +A+++L  FDP+KAAPL  L +++    N
Sbjct:   314 PRLIGLEGSREVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360


>TAIR|locus:2046283 [details] [associations]
            symbol:AT2G18620 species:3702 "Arabidopsis thaliana"
            [GO:0008299 "isoprenoid biosynthetic process" evidence=IEA]
            InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723
            UniPathway:UPA00259 UniPathway:UPA00260 UniPathway:UPA00389
            GO:GO:0005739 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0016020 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
            GO:GO:0046872 GO:GO:0016117 EMBL:AC006135 eggNOG:COG0142
            InterPro:IPR017446 PANTHER:PTHR12001 GO:GO:0004311
            HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337 GO:GO:0045337
            GO:GO:0033384 GO:GO:0033386 KO:K13789 GO:GO:0051501 EMBL:DQ446520
            EMBL:DQ652999 IPI:IPI00544740 PIR:E84566 RefSeq:NP_179452.1
            UniGene:At.52813 ProteinModelPortal:Q9ZU77 SMR:Q9ZU77 STRING:Q9ZU77
            EnsemblPlants:AT2G18620.1 GeneID:816377 KEGG:ath:AT2G18620
            TAIR:At2g18620 InParanoid:Q9ZU77 OMA:YMIGKAN PhylomeDB:Q9ZU77
            Genevestigator:Q9ZU77 Uniprot:Q9ZU77
        Length = 347

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 65/167 (38%), Positives = 104/167 (62%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEAX 62
             VSP R++RAI E++ AIGS+GL AGQ++D++S G    DV L  L FIH HK+   +EA 
Sbjct:   181 VSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLLEAA 240

Query:    63 XXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKATY 121
                             ++R + +C+G+ +Q+ +DI+DV   S E  +T G+D++  K TY
Sbjct:   241 TVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTY 300

Query:   122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             PKL+G+++SK++A +LL+ A ++L  FD ++  PL  L N++    N
Sbjct:   301 PKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPLLALANYIAKRQN 347


>TAIR|locus:2079028 [details] [associations]
            symbol:AT3G32040 species:3702 "Arabidopsis thaliana"
            [GO:0008299 "isoprenoid biosynthetic process" evidence=IEA]
            InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723
            UniPathway:UPA00259 UniPathway:UPA00260 UniPathway:UPA00389
            GO:GO:0005739 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0016020 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
            GO:GO:0046872 GO:GO:0016117 eggNOG:COG0142 InterPro:IPR017446
            PANTHER:PTHR12001 GO:GO:0004311 HOGENOM:HOG000009101 GO:GO:0004161
            GO:GO:0004337 GO:GO:0045337 GO:GO:0033384 GO:GO:0033386 KO:K13789
            GO:GO:0051501 ProtClustDB:CLSN2682670 EMBL:AP002033 EMBL:BT015110
            EMBL:AK221451 IPI:IPI00544436 RefSeq:NP_189747.1 UniGene:At.50761
            ProteinModelPortal:Q9LHR4 SMR:Q9LHR4 STRING:Q9LHR4 PRIDE:Q9LHR4
            EnsemblPlants:AT3G32040.1 GeneID:822957 KEGG:ath:AT3G32040
            TAIR:At3g32040 InParanoid:Q9LHR4 PhylomeDB:Q9LHR4
            Genevestigator:Q9LHR4 Uniprot:Q9LHR4
        Length = 360

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 61/167 (36%), Positives = 102/167 (61%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK---DVSLSELNFIHRHKSEKFVEAX 62
             V+P+R++R++ E++ AIG++GL AGQ+ D+ S+G    DV L  L FIH HK+   +EA 
Sbjct:   194 VAPERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHLHKTAALLEAA 253

Query:    63 XXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATY 121
                             ++R YG+C+G+ +Q+ +DI+DV  S E   +T G+D++  K TY
Sbjct:   254 AVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAGKDVMARKLTY 313

Query:   122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             P+L+G++ S+  A++L  +A ++L  FD  K APL  L +++    N
Sbjct:   314 PRLIGLERSREVAEKLRREAAEQLLGFDSNKVAPLVALASYIACRHN 360


>TAIR|locus:2048993 [details] [associations]
            symbol:GGPS2 "geranylgeranyl pyrophosphate synthase 2"
            species:3702 "Arabidopsis thaliana" [GO:0008299 "isoprenoid
            biosynthetic process" evidence=IEA;TAS] [GO:0005783 "endoplasmic
            reticulum" evidence=IDA] [GO:0006744 "ubiquinone biosynthetic
            process" evidence=RCA] [GO:0004311 "farnesyltranstransferase
            activity" evidence=IGI;IDA] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 UniPathway:UPA00259
            UniPathway:UPA00260 UniPathway:UPA00389 GO:GO:0005783 GO:GO:0005739
            GO:GO:0009536 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
            Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0046872
            GO:GO:0016117 EMBL:AC004482 eggNOG:COG0142 GO:GO:0008299
            InterPro:IPR017446 PANTHER:PTHR12001 GO:GO:0004311
            HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337 GO:GO:0045337
            GO:GO:0033384 GO:GO:0033386 KO:K13789 GO:GO:0051501 EMBL:U44876
            EMBL:BT005328 EMBL:AK117954 EMBL:AY087521 EMBL:D85029
            IPI:IPI00535829 PIR:S71230 PIR:T02429 RefSeq:NP_179960.1
            UniGene:At.1550 ProteinModelPortal:O04046 SMR:O04046 STRING:O04046
            PaxDb:O04046 PRIDE:O04046 EnsemblPlants:AT2G23800.1 GeneID:816912
            KEGG:ath:AT2G23800 TAIR:At2g23800 InParanoid:O04046 OMA:QSMKTGA
            PhylomeDB:O04046 ProtClustDB:CLSN2912871
            BioCyc:ARA:AT2G23800-MONOMER BioCyc:MetaCyc:AT2G23800-MONOMER
            Genevestigator:O04046 GermOnline:AT2G23800 Uniprot:O04046
        Length = 376

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 65/169 (38%), Positives = 95/169 (56%)

Query:     1 MKTKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKD---VSLSELNFIHRHKSEK 57
             M T  +S +R++ A+ E++ +IG+ GL AGQ MDISSEG D   V L  L FIH HK+  
Sbjct:   205 MTTAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAV 264

Query:    58 FVEAXXXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLR 116
              +E                   +R + +C+G+ +Q+ +DI+D    S E  +T G+D L 
Sbjct:   265 LLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLA 324

Query:   117 GKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVS 165
             GK TYPKL+G+++SK + K L   A+Q L  F   K APL  L  F+ +
Sbjct:   325 GKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIAN 373


>TAIR|locus:2087550 [details] [associations]
            symbol:AT3G20160 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008299 "isoprenoid
            biosynthetic process" evidence=IEA;ISS] [GO:0006744 "ubiquinone
            biosynthetic process" evidence=RCA] [GO:0004311
            "farnesyltranstransferase activity" evidence=ISS]
            InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723
            UniPathway:UPA00259 UniPathway:UPA00260 UniPathway:UPA00389
            GO:GO:0005739 GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0016020 Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576
            GO:GO:0046872 EMBL:AP000383 GO:GO:0016117 eggNOG:COG0142
            InterPro:IPR017446 PANTHER:PTHR12001 GO:GO:0004311
            HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337 GO:GO:0045337
            GO:GO:0033384 GO:GO:0033386 KO:K13789 GO:GO:0051501
            ProtClustDB:CLSN2913613 EMBL:DQ446678 EMBL:DQ653096 IPI:IPI00537582
            RefSeq:NP_188651.1 UniGene:At.53400 ProteinModelPortal:Q9LJY2
            SMR:Q9LJY2 STRING:Q9LJY2 EnsemblPlants:AT3G20160.1 GeneID:821560
            KEGG:ath:AT3G20160 TAIR:At3g20160 InParanoid:Q9LJY2 OMA:RSYARCI
            PhylomeDB:Q9LJY2 Genevestigator:Q9LJY2 Uniprot:Q9LJY2
        Length = 344

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 63/169 (37%), Positives = 100/169 (59%)

Query:     5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG----KDVSLSELNFIHRHKSEKFVE 60
             +V P+R+L+ + EM  A+  EGL AGQ  D++ EG     D  L  L FIH HK+   +E
Sbjct:   178 DVPPERILKTVQEMVKAV--EGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTAALLE 235

Query:    61 AXXXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKA 119
             A                 R+R+Y +C+G+ +Q+ +D++DV   S E  +T G+D++ GK 
Sbjct:   236 AAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKL 295

Query:   120 TYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             TYP+L+G+++SK YA+ L  +A++ L  FD  K APL  L +++V+  N
Sbjct:   296 TYPRLMGVEKSKEYAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQN 344


>TAIR|locus:2046258 [details] [associations]
            symbol:GGPS4 "geranylgeranyl pyrophosphate synthase 4"
            species:3702 "Arabidopsis thaliana" [GO:0008299 "isoprenoid
            biosynthetic process" evidence=IEA;ISS;TAS] [GO:0004311
            "farnesyltranstransferase activity" evidence=IGI;IDA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] InterPro:IPR000092
            Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723 UniPathway:UPA00259
            UniPathway:UPA00260 UniPathway:UPA00389 GO:GO:0005783 GO:GO:0005739
            GO:GO:0009536 EMBL:CP002685 GO:GO:0016020 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0046872 GO:GO:0016117
            EMBL:AC006135 EMBL:AC005724 eggNOG:COG0142 GO:GO:0008299
            InterPro:IPR017446 PANTHER:PTHR12001 GO:GO:0004311 GO:GO:0004161
            GO:GO:0004337 GO:GO:0045337 GO:GO:0033384 GO:GO:0033386 KO:K13789
            GO:GO:0051501 ProtClustDB:CLSN2912871 EMBL:DQ446521 EMBL:L22347
            IPI:IPI00546039 PIR:G84566 RefSeq:NP_179454.1 UniGene:At.66219
            ProteinModelPortal:Q9SLG2 SMR:Q9SLG2 STRING:Q9SLG2
            EnsemblPlants:AT2G18640.1 GeneID:816379 KEGG:ath:AT2G18640
            TAIR:At2g18640 InParanoid:Q9SLG2 OMA:DIHANKT PhylomeDB:Q9SLG2
            BioCyc:ARA:AT2G18640-MONOMER BioCyc:MetaCyc:AT2G18640-MONOMER
            Genevestigator:Q9SLG2 Uniprot:Q9SLG2
        Length = 372

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 60/165 (36%), Positives = 100/165 (60%)

Query:     5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEA 61
             +VS  +++RA+ E++ +IG++GL AGQ  D+SSEG    DV L +L +IH HK+   +EA
Sbjct:   205 DVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEA 264

Query:    62 XXXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKAT 120
                              ++RN+ +C+G+ +Q+ +DI+D    S E  +T G+D + GK T
Sbjct:   265 SAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLT 324

Query:   121 YPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVS 165
             YPK++G+++SK + ++L   A++ L  FD  K  PL  L NF+ +
Sbjct:   325 YPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIAN 369


>TAIR|locus:2010182 [details] [associations]
            symbol:GGPS6 "geranylgeranyl pyrophosphate synthase 6"
            species:3702 "Arabidopsis thaliana" [GO:0005739 "mitochondrion"
            evidence=ISM;IDA] [GO:0008299 "isoprenoid biosynthetic process"
            evidence=IEA;ISS;TAS] [GO:0006744 "ubiquinone biosynthetic process"
            evidence=RCA] [GO:0004311 "farnesyltranstransferase activity"
            evidence=IGI;IDA] InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444
            PROSITE:PS00723 UniPathway:UPA00259 UniPathway:UPA00260
            UniPathway:UPA00389 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005739 GO:GO:0009536 GO:GO:0016020 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0046872 GO:GO:0016117
            EMBL:AC007504 eggNOG:COG0142 GO:GO:0008299 InterPro:IPR017446
            PANTHER:PTHR12001 GO:GO:0004311 HOGENOM:HOG000009101 GO:GO:0004161
            GO:GO:0004337 GO:GO:0045337 GO:GO:0033384 GO:GO:0033386 KO:K13789
            GO:GO:0051501 EMBL:AB000835 EMBL:BT011230 EMBL:BT012158
            IPI:IPI00537288 RefSeq:NP_175376.1 UniGene:At.38214
            UniGene:At.49962 ProteinModelPortal:O22043 SMR:O22043 STRING:O22043
            EnsemblPlants:AT1G49530.1 GeneID:841377 KEGG:ath:AT1G49530
            TAIR:At1g49530 InParanoid:O22043 OMA:LCLVACE PhylomeDB:O22043
            ProtClustDB:CLSN2913613 Genevestigator:O22043 GermOnline:AT1G49530
            Uniprot:O22043
        Length = 336

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 61/169 (36%), Positives = 98/169 (57%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSE-----GKDVSLSELNFIHRHKSEKFVE 60
             V+ +R+LRA+ EM+ A+G+EGL AGQ  D++ E      +D  L  L  +H HK+   VE
Sbjct:   168 VTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVE 227

Query:    61 AXXXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKA 119
             A                 R+++Y +CVG+ +Q+ +D++D    S E  +T G+D++ GK 
Sbjct:   228 AAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKL 287

Query:   120 TYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             TYPK++G+D ++ YAK L  +A++ L  FD  K  PL  L +++V   N
Sbjct:   288 TYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336


>UNIPROTKB|Q74CA9 [details] [associations]
            symbol:GSU1765 "Trans-isoprenyl diphosphate synthase"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:AE017180
            GenomeReviews:AE017180_GR GO:GO:0008299 InterPro:IPR017446
            PANTHER:PTHR12001 HOGENOM:HOG000009101 GO:GO:0004337 KO:K13789
            RefSeq:NP_952815.1 ProteinModelPortal:Q74CA9 GeneID:2685235
            KEGG:gsu:GSU1765 PATRIC:22026373 OMA:RRGNPTN ProtClustDB:CLSK828537
            BioCyc:GSUL243231:GH27-1760-MONOMER Uniprot:Q74CA9
        Length = 297

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 58/162 (35%), Positives = 93/162 (57%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG-KDVSLSELNFIHRHKSEKFVEAXXX 64
             V  DRLL  I E++   GS G+  GQ++D+ SEG K++ L+ + +IH  K+   ++A   
Sbjct:   134 VGSDRLLPVIHEIALCAGSRGMVGGQVVDMESEGNKEIDLATVQYIHTRKTGALIKASIK 193

Query:    65 XXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPK 123
                            +  YG+ +G+A+Q+ +DI+D+ G+ E   +  G D  RGKATYP 
Sbjct:   194 AGAVLGGANADAVKAVTRYGEAIGLAFQIADDILDIEGTTEQIGKDAGSDEARGKATYPA 253

Query:   124 LVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVS 165
             ++G+ ESK  A+ELL  A + L+ FD  +A PL  +  ++VS
Sbjct:   254 VLGLAESKRRAQELLDLAIEALSPFDH-RADPLREIARYIVS 294


>TIGR_CMR|GSU_1765 [details] [associations]
            symbol:GSU_1765 "geranyltranstransferase" species:243231
            "Geobacter sulfurreducens PCA" [GO:0004337 "geranyltranstransferase
            activity" evidence=ISS] [GO:0008152 "metabolic process"
            evidence=ISS] InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444
            PROSITE:PS00723 Gene3D:1.10.600.10 InterPro:IPR008949
            SUPFAM:SSF48576 EMBL:AE017180 GenomeReviews:AE017180_GR
            GO:GO:0008299 InterPro:IPR017446 PANTHER:PTHR12001
            HOGENOM:HOG000009101 GO:GO:0004337 KO:K13789 RefSeq:NP_952815.1
            ProteinModelPortal:Q74CA9 GeneID:2685235 KEGG:gsu:GSU1765
            PATRIC:22026373 OMA:RRGNPTN ProtClustDB:CLSK828537
            BioCyc:GSUL243231:GH27-1760-MONOMER Uniprot:Q74CA9
        Length = 297

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 58/162 (35%), Positives = 93/162 (57%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG-KDVSLSELNFIHRHKSEKFVEAXXX 64
             V  DRLL  I E++   GS G+  GQ++D+ SEG K++ L+ + +IH  K+   ++A   
Sbjct:   134 VGSDRLLPVIHEIALCAGSRGMVGGQVVDMESEGNKEIDLATVQYIHTRKTGALIKASIK 193

Query:    65 XXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPK 123
                            +  YG+ +G+A+Q+ +DI+D+ G+ E   +  G D  RGKATYP 
Sbjct:   194 AGAVLGGANADAVKAVTRYGEAIGLAFQIADDILDIEGTTEQIGKDAGSDEARGKATYPA 253

Query:   124 LVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVS 165
             ++G+ ESK  A+ELL  A + L+ FD  +A PL  +  ++VS
Sbjct:   254 VLGLAESKRRAQELLDLAIEALSPFDH-RADPLREIARYIVS 294


>UNIPROTKB|Q81M53 [details] [associations]
            symbol:ispA "Geranyltranstransferase" species:1392
            "Bacillus anthracis" [GO:0045337 "farnesyl diphosphate biosynthetic
            process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR InterPro:IPR017446 PANTHER:PTHR12001
            HOGENOM:HOG000009101 GO:GO:0004337 GO:GO:0045337 KO:K13789
            RefSeq:NP_846630.1 RefSeq:YP_021045.1 RefSeq:YP_030332.1
            ProteinModelPortal:Q81M53 DNASU:1087728
            EnsemblBacteria:EBBACT00000008555 EnsemblBacteria:EBBACT00000017694
            EnsemblBacteria:EBBACT00000019296 GeneID:1087728 GeneID:2819990
            GeneID:2851738 KEGG:ban:BA_4402 KEGG:bar:GBAA_4402 KEGG:bat:BAS4082
            OMA:FACAVEM ProtClustDB:CLSK917292
            BioCyc:BANT260799:GJAJ-4139-MONOMER
            BioCyc:BANT261594:GJ7F-4282-MONOMER Uniprot:Q81M53
        Length = 296

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 45/143 (31%), Positives = 82/143 (57%)

Query:     4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXX 63
             K +S ++ +R ++E++ A G EG+  GQ+ D+ +EGK +++ EL +IH+HK+ K +E   
Sbjct:   132 KEISAEKKVRLVLELAKAAGPEGMVGGQVADMEAEGKQLTIDELEYIHKHKTGKLLEFAV 191

Query:    64 XXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYP 122
                            ++  + K +G+A+Q+ +DI+DV G+ E   +  G D+   K+TY 
Sbjct:   192 LAGSILSDATEEQEEKLLEFAKYIGLAFQIRDDILDVEGTEEEIGKPIGSDVSNEKSTYT 251

Query:   123 KLVGIDESKNYAKELLAKAKQEL 145
              L  +D +K+   E +AKAK  +
Sbjct:   252 TLFTVDRAKDILDETIAKAKDAI 274


>TIGR_CMR|BA_4402 [details] [associations]
            symbol:BA_4402 "geranyltranstransferase" species:198094
            "Bacillus anthracis str. Ames" [GO:0004337 "geranyltranstransferase
            activity" evidence=ISS] [GO:0045337 "farnesyl diphosphate
            biosynthetic process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR InterPro:IPR017446 PANTHER:PTHR12001
            HOGENOM:HOG000009101 GO:GO:0004337 GO:GO:0045337 KO:K13789
            RefSeq:NP_846630.1 RefSeq:YP_021045.1 RefSeq:YP_030332.1
            ProteinModelPortal:Q81M53 DNASU:1087728
            EnsemblBacteria:EBBACT00000008555 EnsemblBacteria:EBBACT00000017694
            EnsemblBacteria:EBBACT00000019296 GeneID:1087728 GeneID:2819990
            GeneID:2851738 KEGG:ban:BA_4402 KEGG:bar:GBAA_4402 KEGG:bat:BAS4082
            OMA:FACAVEM ProtClustDB:CLSK917292
            BioCyc:BANT260799:GJAJ-4139-MONOMER
            BioCyc:BANT261594:GJ7F-4282-MONOMER Uniprot:Q81M53
        Length = 296

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 45/143 (31%), Positives = 82/143 (57%)

Query:     4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXX 63
             K +S ++ +R ++E++ A G EG+  GQ+ D+ +EGK +++ EL +IH+HK+ K +E   
Sbjct:   132 KEISAEKKVRLVLELAKAAGPEGMVGGQVADMEAEGKQLTIDELEYIHKHKTGKLLEFAV 191

Query:    64 XXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYP 122
                            ++  + K +G+A+Q+ +DI+DV G+ E   +  G D+   K+TY 
Sbjct:   192 LAGSILSDATEEQEEKLLEFAKYIGLAFQIRDDILDVEGTEEEIGKPIGSDVSNEKSTYT 251

Query:   123 KLVGIDESKNYAKELLAKAKQEL 145
              L  +D +K+   E +AKAK  +
Sbjct:   252 TLFTVDRAKDILDETIAKAKDAI 274


>UNIPROTKB|Q4K5A6 [details] [associations]
            symbol:ispA "Geranyltranstransferase" species:220664
            "Pseudomonas protegens Pf-5" [GO:0004337 "geranyltranstransferase
            activity" evidence=ISS] [GO:0045337 "farnesyl diphosphate
            biosynthetic process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CP000076
            GenomeReviews:CP000076_GR eggNOG:COG0142 InterPro:IPR017446
            PANTHER:PTHR12001 HOGENOM:HOG000009101 GO:GO:0004337 GO:GO:0045337
            KO:K13789 OMA:DLISEHK RefSeq:YP_262577.1 PDB:3LJI PDB:3LSN PDB:3P41
            PDBsum:3LJI PDBsum:3LSN PDBsum:3P41 ProteinModelPortal:Q4K5A6
            STRING:Q4K5A6 DNASU:3479897 GeneID:3479897 KEGG:pfl:PFL_5509
            PATRIC:19880507 ProtClustDB:CLSK868404
            BioCyc:PFLU220664:GIX8-5546-MONOMER EvolutionaryTrace:Q4K5A6
            Uniprot:Q4K5A6
        Length = 295

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 51/162 (31%), Positives = 82/162 (50%)

Query:     5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXX 64
             + S +  LR +  ++ A G  G+  GQ +D+ S G  +    L ++HRHK+   +EA   
Sbjct:   131 DASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVI 190

Query:    65 XXXXXXXXXXXXXXR-MRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYP 122
                           + ++ Y + +G+A+Q+ +DI+DV     T  +  G D+ R K TYP
Sbjct:   191 LGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYP 250

Query:   123 KLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164
              L+G+  +K YA EL  +A   L  FD A A PL  L  ++V
Sbjct:   251 ALLGLAAAKEYALELRDQALHALRPFDAA-AEPLRELARYIV 291


>UNIPROTKB|P22939 [details] [associations]
            symbol:ispA "geranyl diphosphate synthase / farnesyl
            diphosphate synthase" species:83333 "Escherichia coli K-12"
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0033384 "geranyl
            diphosphate biosynthetic process" evidence=IMP] [GO:0004337
            "geranyltranstransferase activity" evidence=IEA;IDA] [GO:0004161
            "dimethylallyltranstransferase activity" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0045337 "farnesyl diphosphate
            biosynthetic process" evidence=IMP] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 GO:GO:0005737 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
            EMBL:U82664 eggNOG:COG0142 InterPro:IPR017446 PANTHER:PTHR12001
            HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337 GO:GO:0045337
            GO:GO:0033384 EMBL:D00694 PIR:JQ0665 RefSeq:NP_414955.1
            RefSeq:YP_488713.1 PDB:1RQI PDB:1RQJ PDBsum:1RQI PDBsum:1RQJ
            ProteinModelPortal:P22939 SMR:P22939 DIP:DIP-10044N IntAct:P22939
            MINT:MINT-1233182 SWISS-2DPAGE:P22939 PRIDE:P22939
            EnsemblBacteria:EBESCT00000002132 EnsemblBacteria:EBESCT00000015988
            GeneID:12930843 GeneID:945064 KEGG:ecj:Y75_p0409 KEGG:eco:b0421
            PATRIC:32115991 EchoBASE:EB0503 EcoGene:EG10508 KO:K00795
            OMA:NITEECI ProtClustDB:PRK10581 BioCyc:EcoCyc:FPPSYN-MONOMER
            BioCyc:ECOL316407:JW0411-MONOMER BioCyc:MetaCyc:FPPSYN-MONOMER
            BRENDA:2.5.1.1 SABIO-RK:P22939 ChEMBL:CHEMBL1075078
            EvolutionaryTrace:P22939 Genevestigator:P22939 Uniprot:P22939
        Length = 299

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 47/139 (33%), Positives = 78/139 (56%)

Query:     9 DRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXX 68
             DR+   I E++SA G  G+  GQ +D+ +EGK V L  L  IHRHK+   + A       
Sbjct:   137 DRI-SMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGAL 195

Query:    69 XXXXXXXXXXRMRN-YGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVG 126
                        + + Y + +G+A+Q+ +DI+DV+G   T  +  G D   GK+TYP L+G
Sbjct:   196 SAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLG 255

Query:   127 IDESKNYAKELLAKAKQEL 145
             +++++  A++L+  A+Q L
Sbjct:   256 LEQARKKARDLIDDARQSL 274


>UNIPROTKB|Q3AAM7 [details] [associations]
            symbol:CHY_1988 "Geranyltranstransferase" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CP000141
            GenomeReviews:CP000141_GR eggNOG:COG0142 GO:GO:0008299
            InterPro:IPR017446 PANTHER:PTHR12001 HOGENOM:HOG000009101
            GO:GO:0004337 KO:K13789 OMA:NITEECI RefSeq:YP_360807.1
            ProteinModelPortal:Q3AAM7 STRING:Q3AAM7 GeneID:3727552
            KEGG:chy:CHY_1988 PATRIC:21277063
            BioCyc:CHYD246194:GJCN-1987-MONOMER Uniprot:Q3AAM7
        Length = 295

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 44/143 (30%), Positives = 76/143 (53%)

Query:     4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXX 63
             + +  +R++R I E++ A GSEGL AGQ++D+SS         L +IH +K+ + +    
Sbjct:   131 QGIPAERVVRVIQELAVASGSEGLIAGQVVDLSSSEAKKDPEVLLYIHLNKTARLIRYSL 190

Query:    64 XXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGS-PETKETTGRDMLRGKATYP 122
                             + +YG+ +G+A+Q+ +D++DV+G   +  +  G D    K TY 
Sbjct:   191 IAGGILAGATEEEIKALDDYGRHLGLAFQIVDDLLDVVGDFQKIGKPVGSDEKNQKLTYV 250

Query:   123 KLVGIDESKNYAKELLAKAKQEL 145
              L GI+E+K  A+E +  AK  L
Sbjct:   251 SLFGIEETKKRAEEEINAAKNVL 273


>TIGR_CMR|CHY_1988 [details] [associations]
            symbol:CHY_1988 "geranyltranstransferase" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] [GO:0008152
            "metabolic process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CP000141
            GenomeReviews:CP000141_GR eggNOG:COG0142 GO:GO:0008299
            InterPro:IPR017446 PANTHER:PTHR12001 HOGENOM:HOG000009101
            GO:GO:0004337 KO:K13789 OMA:NITEECI RefSeq:YP_360807.1
            ProteinModelPortal:Q3AAM7 STRING:Q3AAM7 GeneID:3727552
            KEGG:chy:CHY_1988 PATRIC:21277063
            BioCyc:CHYD246194:GJCN-1987-MONOMER Uniprot:Q3AAM7
        Length = 295

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 44/143 (30%), Positives = 76/143 (53%)

Query:     4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXX 63
             + +  +R++R I E++ A GSEGL AGQ++D+SS         L +IH +K+ + +    
Sbjct:   131 QGIPAERVVRVIQELAVASGSEGLIAGQVVDLSSSEAKKDPEVLLYIHLNKTARLIRYSL 190

Query:    64 XXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGS-PETKETTGRDMLRGKATYP 122
                             + +YG+ +G+A+Q+ +D++DV+G   +  +  G D    K TY 
Sbjct:   191 IAGGILAGATEEEIKALDDYGRHLGLAFQIVDDLLDVVGDFQKIGKPVGSDEKNQKLTYV 250

Query:   123 KLVGIDESKNYAKELLAKAKQEL 145
              L GI+E+K  A+E +  AK  L
Sbjct:   251 SLFGIEETKKRAEEEINAAKNVL 273


>TIGR_CMR|CPS_1089 [details] [associations]
            symbol:CPS_1089 "geranyltranstransferase" species:167879
            "Colwellia psychrerythraea 34H" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] [GO:0008299
            "isoprenoid biosynthetic process" evidence=ISS] InterPro:IPR000092
            Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CP000083
            GenomeReviews:CP000083_GR eggNOG:COG0142 GO:GO:0008299
            InterPro:IPR017446 PANTHER:PTHR12001 HOGENOM:HOG000009101
            GO:GO:0004337 KO:K00795 RefSeq:YP_267833.1
            ProteinModelPortal:Q487D2 STRING:Q487D2 GeneID:3518499
            KEGG:cps:CPS_1089 PATRIC:21465449 OMA:KTCTEIC
            BioCyc:CPSY167879:GI48-1171-MONOMER Uniprot:Q487D2
        Length = 300

 Score = 188 (71.2 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 44/155 (28%), Positives = 80/155 (51%)

Query:    12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXX-XX 70
             ++ I ++  A G +G+  GQ +D+++ GK++SL EL  +H  K+   +EA          
Sbjct:   143 VKLIQQLVKASGYQGMCGGQALDLAATGKNISLGELEVLHSLKTGALLEASVLMPAMCSG 202

Query:    71 XXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVGIDE 129
                      +  Y + +G+AYQ+ +DI+D+  + E   +  G D+   K+TYP L+G+  
Sbjct:   203 QVTREYKIILSEYAQLIGLAYQVQDDIIDLTSTEEELGKPVGSDIAANKSTYPALLGLQG 262

Query:   130 SKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164
             +++ A+ LL +A Q L+   P     L     F+V
Sbjct:   263 AQDKAENLLQQALQALSRL-PYNTQSLADFATFIV 296


>UNIPROTKB|Q9KTL2 [details] [associations]
            symbol:VC_0890 "Geranyltranstransferase" species:243277
            "Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] InterPro:IPR000092
            Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0008299 InterPro:IPR017446
            PANTHER:PTHR12001 GO:GO:0004337 KO:K00795 OMA:DLISEHK PIR:A82267
            RefSeq:NP_230537.1 PDB:3P8R PDBsum:3P8R ProteinModelPortal:Q9KTL2
            SMR:Q9KTL2 DNASU:2614119 GeneID:2614119 KEGG:vch:VC0890
            PATRIC:20080878 ProtClustDB:CLSK874144 Uniprot:Q9KTL2
        Length = 294

 Score = 185 (70.2 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 47/160 (29%), Positives = 81/160 (50%)

Query:    11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVE-AXXXXXXXX 69
             +L+A+ E S   G++G+  GQ +D+++E + +SL EL  IHR+K+   +  A        
Sbjct:   139 MLQALAEAS---GAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAA 195

Query:    70 XXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVGID 128
                       +  Y + VG+A+Q+ +DI+D+I   ET  +  G D    K+TYP L+G++
Sbjct:   196 GEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLE 255

Query:   129 ESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
              ++  A  LL +A   L    P     L+    ++V   N
Sbjct:   256 GAQQKAHTLLQEALLALEAI-PYNTEHLEEFARYVVERKN 294


>TIGR_CMR|VC_0890 [details] [associations]
            symbol:VC_0890 "geranyltranstransferase" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] [GO:0008299
            "isoprenoid biosynthetic process" evidence=ISS] InterPro:IPR000092
            Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0008299 InterPro:IPR017446
            PANTHER:PTHR12001 GO:GO:0004337 KO:K00795 OMA:DLISEHK PIR:A82267
            RefSeq:NP_230537.1 PDB:3P8R PDBsum:3P8R ProteinModelPortal:Q9KTL2
            SMR:Q9KTL2 DNASU:2614119 GeneID:2614119 KEGG:vch:VC0890
            PATRIC:20080878 ProtClustDB:CLSK874144 Uniprot:Q9KTL2
        Length = 294

 Score = 185 (70.2 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 47/160 (29%), Positives = 81/160 (50%)

Query:    11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVE-AXXXXXXXX 69
             +L+A+ E S   G++G+  GQ +D+++E + +SL EL  IHR+K+   +  A        
Sbjct:   139 MLQALAEAS---GAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAA 195

Query:    70 XXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVGID 128
                       +  Y + VG+A+Q+ +DI+D+I   ET  +  G D    K+TYP L+G++
Sbjct:   196 GEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLE 255

Query:   129 ESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
              ++  A  LL +A   L    P     L+    ++V   N
Sbjct:   256 GAQQKAHTLLQEALLALEAI-PYNTEHLEEFARYVVERKN 294


>TIGR_CMR|SO_1526 [details] [associations]
            symbol:SO_1526 "geranyltranstransferase" species:211586
            "Shewanella oneidensis MR-1" [GO:0004337 "geranyltranstransferase
            activity" evidence=ISS] [GO:0045337 "farnesyl diphosphate
            biosynthetic process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0008299 InterPro:IPR017446
            PANTHER:PTHR12001 HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337
            OMA:MEFAHAV KO:K00795 RefSeq:NP_717143.1 ProteinModelPortal:Q8EGR8
            GeneID:1169335 KEGG:son:SO_1526 PATRIC:23522694
            ProtClustDB:CLSK906310 Uniprot:Q8EGR8
        Length = 293

 Score = 162 (62.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 35/142 (24%), Positives = 70/142 (49%)

Query:     6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXX 65
             ++ ++ +  +  ++ A G  G+  GQ +D++S  K + L  L  +H  K+   +      
Sbjct:   131 ITSEQHIAMVRALAKASGYRGMCGGQAIDLASTDKHIDLKALTQLHNMKTGALISCAVEL 190

Query:    66 XXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKL 124
                           M  +   VG+A+Q+ +DI+D+I + E   +  G D    K+T+P+L
Sbjct:   191 ALIAANAPKDQYQTMMEFAHAVGLAFQVQDDILDIIATTEELGKPQGSDAESNKSTFPQL 250

Query:   125 VGIDESKNYAKELLAKAKQELA 146
             +G+  +K+ A +L+ +A   LA
Sbjct:   251 LGLQGAKDTATQLIQEALSALA 272


>UNIPROTKB|Q5LX41 [details] [associations]
            symbol:ispA "Farnesyl diphosphate synthase" species:246200
            "Ruegeria pomeroyi DSS-3" [GO:0004337 "geranyltranstransferase
            activity" evidence=ISS] [GO:0045337 "farnesyl diphosphate
            biosynthetic process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CP000031
            GenomeReviews:CP000031_GR InterPro:IPR017446 PANTHER:PTHR12001
            HOGENOM:HOG000009101 GO:GO:0004337 GO:GO:0045337 KO:K00795
            RefSeq:YP_165512.1 ProteinModelPortal:Q5LX41 GeneID:3196371
            KEGG:sil:SPO0248 PATRIC:23373747 OMA:ANTETHG
            ProtClustDB:CLSK2767208 Uniprot:Q5LX41
        Length = 288

 Score = 151 (58.2 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 40/154 (25%), Positives = 77/154 (50%)

Query:    18 MSSAIGSEGLAAGQIMDISSEG--KDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXX 75
             ++ A G+ G+  GQ +DI++E   K ++L ++  +   K+   +E               
Sbjct:   139 LAQAAGARGMVLGQALDIAAETAPKPLTLDQITRLQAGKTGALIE---WAAAAGAVLAGA 195

Query:    76 XXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVGIDESKNYA 134
                 +R Y + +G+A+Q+ +DI+DV G  E   +   +D   GKAT+  L+G+D +K  A
Sbjct:   196 DPDPLRQYARALGLAFQIADDILDVEGDAEKAGKRLQKDAGAGKATFVSLLGLDAAKARA 255

Query:   135 KELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             ++L+ +    L  +   +A  L     F+++ DN
Sbjct:   256 RDLVDQGCAALDGYGE-RAGTLKEAARFVIARDN 288


>TIGR_CMR|SPO_0248 [details] [associations]
            symbol:SPO_0248 "farnesyl diphosphate synthase"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] [GO:0045337
            "farnesyl diphosphate biosynthetic process" evidence=ISS]
            InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723
            Gene3D:1.10.600.10 InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CP000031
            GenomeReviews:CP000031_GR InterPro:IPR017446 PANTHER:PTHR12001
            HOGENOM:HOG000009101 GO:GO:0004337 GO:GO:0045337 KO:K00795
            RefSeq:YP_165512.1 ProteinModelPortal:Q5LX41 GeneID:3196371
            KEGG:sil:SPO0248 PATRIC:23373747 OMA:ANTETHG
            ProtClustDB:CLSK2767208 Uniprot:Q5LX41
        Length = 288

 Score = 151 (58.2 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 40/154 (25%), Positives = 77/154 (50%)

Query:    18 MSSAIGSEGLAAGQIMDISSEG--KDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXX 75
             ++ A G+ G+  GQ +DI++E   K ++L ++  +   K+   +E               
Sbjct:   139 LAQAAGARGMVLGQALDIAAETAPKPLTLDQITRLQAGKTGALIE---WAAAAGAVLAGA 195

Query:    76 XXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVGIDESKNYA 134
                 +R Y + +G+A+Q+ +DI+DV G  E   +   +D   GKAT+  L+G+D +K  A
Sbjct:   196 DPDPLRQYARALGLAFQIADDILDVEGDAEKAGKRLQKDAGAGKATFVSLLGLDAAKARA 255

Query:   135 KELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
             ++L+ +    L  +   +A  L     F+++ DN
Sbjct:   256 RDLVDQGCAALDGYGE-RAGTLKEAARFVIARDN 288


>UNIPROTKB|Q0C153 [details] [associations]
            symbol:ispA "Geranyltranstransferase" species:228405
            "Hyphomonas neptunium ATCC 15444" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] [GO:0008299
            "isoprenoid biosynthetic process" evidence=ISS] InterPro:IPR000092
            Pfam:PF00348 PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CP000158
            GenomeReviews:CP000158_GR eggNOG:COG0142 GO:GO:0008299
            InterPro:IPR017446 PANTHER:PTHR12001 HOGENOM:HOG000009101
            GO:GO:0004337 KO:K00795 RefSeq:YP_760540.1
            ProteinModelPortal:Q0C153 STRING:Q0C153 GeneID:4289927
            KEGG:hne:HNE_1839 PATRIC:32216509 OMA:ICKDISK
            ProtClustDB:CLSK2780959 BioCyc:HNEP228405:GI69-1865-MONOMER
            Uniprot:Q0C153
        Length = 295

 Score = 147 (56.8 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 38/152 (25%), Positives = 72/152 (47%)

Query:    15 IVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXX 74
             I  ++ A G+ G+  GQ++D+  E     L+ +  + R K+   +               
Sbjct:   142 IERLADAAGARGMVGGQMIDMLEEESPRDLNTITRMQRLKTGALISYALEAGGIIGHARE 201

Query:    75 XXXXRMRNYGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKATYPKLVGIDESKNY 133
                  +  +   +G+AYQ+ +DI+D  G      +   +D   GKA +  L+G+D ++  
Sbjct:   202 AERNALAGFANDLGLAYQIADDILDAEGDESIVGKAVSKDKDAGKANFVTLLGVDGARQR 261

Query:   134 AKELLAKAKQELAYFDPAKAAPLDHLVNFMVS 165
              + L A+AK+ LA F   KA  L H V+++++
Sbjct:   262 VRLLAAQAKEHLAIFRD-KAHILLHSVDYVLN 292


>TIGR_CMR|CJE_1816 [details] [associations]
            symbol:CJE_1816 "geranyltranstransferase" species:195099
            "Campylobacter jejuni RM1221" [GO:0004337 "geranyltranstransferase
            activity" evidence=ISS] [GO:0008299 "isoprenoid biosynthetic
            process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:CP000025
            GenomeReviews:CP000025_GR eggNOG:COG0142 GO:GO:0008299
            InterPro:IPR017446 PANTHER:PTHR12001 HOGENOM:HOG000009101
            GO:GO:0004337 KO:K00795 OMA:DLISEHK RefSeq:YP_179786.1 PDB:3NPK
            PDBsum:3NPK ProteinModelPortal:Q5HSE9 STRING:Q5HSE9 GeneID:3232443
            KEGG:cjr:CJE1816 PATRIC:20045454 ProtClustDB:CLSK872468
            BioCyc:CJEJ195099:GJC0-1850-MONOMER Uniprot:Q5HSE9
        Length = 281

 Score = 144 (55.7 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 37/150 (24%), Positives = 74/150 (49%)

Query:    12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXX 71
             ++ I  ++   G  G+  GQ +D   E K +SL+EL F+H HK+ + + A          
Sbjct:   130 IKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICE 189

Query:    72 XXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVGIDES 130
                    ++   G  +G+ +Q+ +DI+DV  S E   + T  D+   K ++  L+G++++
Sbjct:   190 LNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDI--HKNSFVNLLGLEQA 247

Query:   131 KNYAKELLAKAKQELAYFDPAKAAPLDHLV 160
                 + LL + +Q+L   +   A  + +L+
Sbjct:   248 IKTKENLLNECEQDLEKLNEKLAQMIQNLI 277


>TAIR|locus:2121149 [details] [associations]
            symbol:GGR "geranylgeranyl reductase" species:3702
            "Arabidopsis thaliana" [GO:0008299 "isoprenoid biosynthetic
            process" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0004311 "farnesyltranstransferase activity" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000092
            Pfam:PF00348 PROSITE:PS00723 GO:GO:0009507 EMBL:CP002687
            GenomeReviews:CT486007_GR Gene3D:1.10.600.10 InterPro:IPR008949
            SUPFAM:SSF48576 GO:GO:0046872 EMBL:AL161593 eggNOG:COG0142
            GO:GO:0008299 InterPro:IPR017446 PANTHER:PTHR12001 EMBL:AL035540
            HOGENOM:HOG000009101 KO:K13789 GO:GO:0051501 EMBL:L40577
            EMBL:AY057734 EMBL:AF324662 EMBL:AF326906 EMBL:AF339725
            EMBL:AF372915 EMBL:AY086829 IPI:IPI00540165 PIR:T05674
            RefSeq:NP_195558.1 UniGene:At.20379 ProteinModelPortal:Q39108
            SMR:Q39108 IntAct:Q39108 STRING:Q39108 PaxDb:Q39108 PRIDE:Q39108
            EnsemblPlants:AT4G38460.1 GeneID:830002 KEGG:ath:AT4G38460
            TAIR:At4g38460 InParanoid:Q39108 OMA:SAMRYAV PhylomeDB:Q39108
            ProtClustDB:CLSN2685424 Genevestigator:Q39108 GermOnline:AT4G38460
            Uniprot:Q39108
        Length = 326

 Score = 111 (44.1 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 29/89 (32%), Positives = 42/89 (47%)

Query:    11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXX 70
             +LR I E++  +GS G+AAGQ +D+  EG    LS   F+   K     E          
Sbjct:   182 ILRLITEIARTVGSTGMAAGQYVDL--EGGPFPLS---FVQEKKFGAMGECSAVCGGLLG 236

Query:    71 XXXXXXXXRMRNYGKCVGMAYQLWNDIVD 99
                      +R YG+ VGM YQ+ +DI +
Sbjct:   237 GATEDELQSLRRYGRAVGMLYQVVDDITE 265

 Score = 45 (20.9 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query:   134 AKELLAKAKQELAYFD 149
             A+EL  KAK+EL  FD
Sbjct:   283 AEELKEKAKKELQVFD 298


>TIGR_CMR|CPS_4513 [details] [associations]
            symbol:CPS_4513 "octaprenyl-diphosphate synthase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0006744
            "ubiquinone biosynthetic process" evidence=ISS] [GO:0009234
            "menaquinone biosynthetic process" evidence=ISS] [GO:0016765
            "transferase activity, transferring alkyl or aryl (other than
            methyl) groups" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00444 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 GO:GO:0016740 EMBL:CP000083
            GenomeReviews:CP000083_GR eggNOG:COG0142 GO:GO:0008299
            InterPro:IPR017446 PANTHER:PTHR12001 KO:K02523 HOGENOM:HOG000009102
            OMA:YITSAGG RefSeq:YP_271161.1 ProteinModelPortal:Q47VL1
            STRING:Q47VL1 GeneID:3518869 KEGG:cps:CPS_4513 PATRIC:21471849
            BioCyc:CPSY167879:GI48-4522-MONOMER Uniprot:Q47VL1
        Length = 327

 Score = 109 (43.4 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 34/122 (27%), Positives = 56/122 (45%)

Query:    27 LAAGQIMDISSEGKDVSLSELNFIH--RHKSEKFVEAXXXXXXXXXXXXXXXXXRMRNYG 84
             +A G+++ + +   D S +E +++     K+ K  EA                  M +YG
Sbjct:   146 VAEGEVLQLMN-CNDASTTEESYMQVIYCKTAKLFEAATRLAAVIAKQDAKIEQAMADYG 204

Query:    85 KCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQ 143
             K +G A+QL +DI+D    + E  +  G D+  GK T P L  +    N A++ L K   
Sbjct:   205 KYLGTAFQLVDDIMDYTADAKEMGKNVGDDLAEGKPTLPLLYAMKHG-NEAQQKLIKEAI 263

Query:   144 EL 145
             EL
Sbjct:   264 EL 265


>TIGR_CMR|SO_3653 [details] [associations]
            symbol:SO_3653 "octaprenyl-diphosphate synthase"
            species:211586 "Shewanella oneidensis MR-1" [GO:0006744 "ubiquinone
            biosynthetic process" evidence=ISS] [GO:0009234 "menaquinone
            biosynthetic process" evidence=ISS] [GO:0016765 "transferase
            activity, transferring alkyl or aryl (other than methyl) groups"
            evidence=ISS] InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00444
            PROSITE:PS00723 Gene3D:1.10.600.10 InterPro:IPR008949
            SUPFAM:SSF48576 GO:GO:0016740 EMBL:AE014299
            GenomeReviews:AE014299_GR GO:GO:0008299 InterPro:IPR017446
            PANTHER:PTHR12001 KO:K02523 HOGENOM:HOG000009102 OMA:YITSAGG
            RefSeq:NP_719195.2 ProteinModelPortal:Q8EB79 GeneID:1171312
            KEGG:son:SO_3653 PATRIC:23526992 ProtClustDB:CLSK907271
            Uniprot:Q8EB79
        Length = 331

 Score = 109 (43.4 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 34/136 (25%), Positives = 63/136 (46%)

Query:    10 RLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXX 69
             R+LR + + ++ + +EG    Q+M+ + +      S +  I+  K+ K  EA        
Sbjct:   138 RVLRVLADTTNVL-AEGEVL-QLMNCN-DPDTTEESYMRVIYC-KTAKLFEAATLLAAVL 193

Query:    70 XXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATYPKLVGID 128
                       + +YGK +G A+QL +D++D    S E  +  G D+  GK T P +  I 
Sbjct:   194 AGASPEQETALGDYGKYLGTAFQLTDDLLDYTADSDELGKNIGDDLAEGKPTLPLIYAIA 253

Query:   129 ESKNYAKELLAKAKQE 144
                   K+L+ +A ++
Sbjct:   254 HGTEEEKQLIRQAIEQ 269


>UNIPROTKB|Q83C74 [details] [associations]
            symbol:CBU_1255 "Dimethylallyltransferase" species:227377
            "Coxiella burnetii RSA 493" [GO:0004337 "geranyltranstransferase
            activity" evidence=ISS] [GO:0045337 "farnesyl diphosphate
            biosynthetic process" evidence=ISS] InterPro:IPR000092 Pfam:PF00348
            PROSITE:PS00723 Gene3D:1.10.600.10 InterPro:IPR008949
            SUPFAM:SSF48576 EMBL:AE016828 GenomeReviews:AE016828_GR
            InterPro:IPR017446 PANTHER:PTHR12001 GO:GO:0004311
            HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337 GO:GO:0045337
            KO:K00795 RefSeq:NP_820249.1 ProteinModelPortal:Q83C74
            GeneID:1209160 KEGG:cbu:CBU_1255 PATRIC:17931243 OMA:MACAVEC
            ProtClustDB:CLSK914646 BioCyc:CBUR227377:GJ7S-1240-MONOMER
            Uniprot:Q83C74
        Length = 267

 Score = 103 (41.3 bits), Expect = 0.00044, P = 0.00044
 Identities = 24/92 (26%), Positives = 45/92 (48%)

Query:     9 DRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEK-FVEAXXXXXX 67
             D+ +R I  +++A GS G+A GQ +D+  + K+ +  ++  +HR K+   F  A      
Sbjct:   125 DKNIRLINVLANACGSLGMAGGQQLDLEFKNKEATPEQIEIVHRLKTGALFSTAIELGAL 184

Query:    68 XXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVD 99
                        ++R  G  VG+ +Q  +D+ D
Sbjct:   185 AAGCLDEKRLQKLRKLGATVGLIFQWQDDLAD 216


>TIGR_CMR|CBU_1255 [details] [associations]
            symbol:CBU_1255 "geranyltranstransferase, putative"
            species:227377 "Coxiella burnetii RSA 493" [GO:0004337
            "geranyltranstransferase activity" evidence=ISS] [GO:0045337
            "farnesyl diphosphate biosynthetic process" evidence=ISS]
            InterPro:IPR000092 Pfam:PF00348 PROSITE:PS00723 Gene3D:1.10.600.10
            InterPro:IPR008949 SUPFAM:SSF48576 EMBL:AE016828
            GenomeReviews:AE016828_GR InterPro:IPR017446 PANTHER:PTHR12001
            GO:GO:0004311 HOGENOM:HOG000009101 GO:GO:0004161 GO:GO:0004337
            GO:GO:0045337 KO:K00795 RefSeq:NP_820249.1
            ProteinModelPortal:Q83C74 GeneID:1209160 KEGG:cbu:CBU_1255
            PATRIC:17931243 OMA:MACAVEC ProtClustDB:CLSK914646
            BioCyc:CBUR227377:GJ7S-1240-MONOMER Uniprot:Q83C74
        Length = 267

 Score = 103 (41.3 bits), Expect = 0.00044, P = 0.00044
 Identities = 24/92 (26%), Positives = 45/92 (48%)

Query:     9 DRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEK-FVEAXXXXXX 67
             D+ +R I  +++A GS G+A GQ +D+  + K+ +  ++  +HR K+   F  A      
Sbjct:   125 DKNIRLINVLANACGSLGMAGGQQLDLEFKNKEATPEQIEIVHRLKTGALFSTAIELGAL 184

Query:    68 XXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVD 99
                        ++R  G  VG+ +Q  +D+ D
Sbjct:   185 AAGCLDEKRLQKLRKLGATVGLIFQWQDDLAD 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       153   0.00081  105 3  11 22  0.37    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  31
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  131 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.26u 0.08s 12.34t   Elapsed:  00:00:01
  Total cpu time:  12.26u 0.08s 12.34t   Elapsed:  00:00:01
  Start:  Thu May  9 19:29:07 2013   End:  Thu May  9 19:29:08 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with GGPS1 GGPS1 GGPS1 geranylgeranyl pyrophosphate synthase 1	protein from Arabidopsis thaliana	1.0e-29
BLAST match view associations BLAST with AT3G29430 AT3G29430 AT3G29430	protein from Arabidopsis thaliana	7.1e-29
BLAST match view associations BLAST with GGPS1 GGPS1 GGPS1 Geranylgeranyl pyrophosphate synthase, chloroplastic	protein from Capsicum annuum	9.1e-29
BLAST match view associations BLAST with AT3G14530 AT3G14530 AT3G14530	protein from Arabidopsis thaliana	9.1e-29
BLAST match view associations BLAST with GGPS2 GGPS2 GGPS2 AT2G23800	protein from Arabidopsis thaliana	3.5e-27
BLAST match view associations BLAST with AT3G20160 AT3G20160 AT3G20160	protein from Arabidopsis thaliana	4.5e-27
BLAST match view associations BLAST with GGPS4 GGPS4 GGPS4 AT2G18640	protein from Arabidopsis thaliana	4.5e-27
BLAST match view associations BLAST with GGPS6 GGPS6 GGPS6 geranylgeranyl pyrophosphate synthase 6	protein from Arabidopsis thaliana	4.0e-26
BLAST match view associations BLAST with GSU1765 GSU1765 GSU1765 Trans-isoprenyl diphosphate synthase	protein from Geobacter sulfurreducens PCA	7.8e-23
BLAST match view associations BLAST with GSU_1765 GSU_1765 GSU_1765 geranyltranstransferase	protein from Geobacter sulfurreducens PCA	7.8e-23
BLAST match view associations BLAST with ispA ispA ispA Geranyltranstransferase	protein from Bacillus anthracis	4.4e-20
BLAST match view associations BLAST with BA_4402 BA_4402 BA_4402 geranyltranstransferase	protein from Bacillus anthracis str. Ames	4.4e-20
BLAST match view associations BLAST with ispA ispA ispA Geranyltranstransferase	protein from Pseudomonas protegens Pf-5	5.8e-18
BLAST match view associations BLAST with ispA ispA ispA geranyl diphosphate synthase / farnesyl diphosphate synthase	protein from Escherichia coli K-12	9.5e-18
BLAST match view associations BLAST with CHY_1988 CHY_1988 CHY_1988 Geranyltranstransferase	protein from Carboxydothermus hydrogenoformans Z-2901	2.0e-15
BLAST match view associations BLAST with CHY_1988 CHY_1988 CHY_1988 geranyltranstransferase	protein from Carboxydothermus hydrogenoformans Z-2901	2.0e-15
BLAST match view associations BLAST with CPS_1089 CPS_1089 CPS_1089 geranyltranstransferase	protein from Colwellia psychrerythraea 34H	1.2e-14
BLAST match view associations BLAST with VC_0890 VC_0890 VC_0890 Geranyltranstransferase	protein from Vibrio cholerae O1 biovar El Tor str. N16961	2.4e-14
BLAST match view associations BLAST with VC_0890 VC_0890 VC_0890 geranyltranstransferase	protein from Vibrio cholerae O1 biovar El Tor	2.4e-14
BLAST match view associations BLAST with SO_1526 SO_1526 SO_1526 geranyltranstransferase	protein from Shewanella oneidensis MR-1	1.1e-11
BLAST match view associations BLAST with ispA ispA ispA Farnesyl diphosphate synthase	protein from Ruegeria pomeroyi DSS-3	1.8e-10
BLAST match view associations BLAST with SPO_0248 SPO_0248 SPO_0248 farnesyl diphosphate synthase	protein from Ruegeria pomeroyi DSS-3	1.8e-10
BLAST match view associations BLAST with ispA ispA ispA Geranyltranstransferase	protein from Hyphomonas neptunium ATCC 15444	5.6e-10
BLAST match view associations BLAST with CJE_1816 CJE_1816 CJE_1816 geranyltranstransferase	protein from Campylobacter jejuni RM1221	1.0e-09
BLAST match view associations BLAST with GGR GGR GGR geranylgeranyl reductase	protein from Arabidopsis thaliana	4.1e-08
BLAST match view associations BLAST with CPS_4513 CPS_4513 CPS_4513 octaprenyl-diphosphate synthase	protein from Colwellia psychrerythraea 34H	5.6e-05
BLAST match view associations BLAST with SO_3653 SO_3653 SO_3653 octaprenyl-diphosphate synthase	protein from Shewanella oneidensis MR-1	5.7e-05
BLAST match view associations BLAST with CBU_1255 CBU_1255 CBU_1255 Dimethylallyltransferase	protein from Coxiella burnetii RSA 493	0.00044
BLAST match view associations BLAST with CBU_1255 CBU_1255 CBU_1255 geranyltranstransferase, putative	protein from Coxiella burnetii RSA 493	0.00044