BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042175
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 133 bits (334), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Query: 3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG-KDVSLSELNFIHRHKSEKFVEA 61
TK P+R++R + E++ +IGSEGL AGQ++D+ SEG +V L L FIH HK+ ++
Sbjct: 128 TKGAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKTAALLQG 187
Query: 62 XXXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKAT 120
++R + C+G+ +Q+ +DI+DV S E +T G+D++ K T
Sbjct: 188 SVVLGAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTT 247
Query: 121 YPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
YPKL+G+++SK +A L +A+++L +F P +AAPL L N++ DN
Sbjct: 248 YPKLIGVEKSKEFADRLNREAQEQLLHFHPHRAAPLIALANYIAYRDN 295
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 16/169 (9%)
Query: 3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKD---VSLSELNFIHRHKSEKFV 59
+ VSP R++RA+ E++ AIG+EGL AGQ++DISSEG D V L L FIH HK+ +
Sbjct: 138 SSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALL 197
Query: 60 EAXXXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKA 119
EA R+R + +C+G+ +Q+ +DI+DV S K
Sbjct: 198 EASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKS-------------SKL 244
Query: 120 TYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
TYPKL G+++S+ +A++L +A+ +L FD K APL L N++ + N
Sbjct: 245 TYPKLXGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 293
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 17/166 (10%)
Query: 3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAX 62
+ VSP R++RA+ E++ AIG+EGL AGQ++DIS +V L L FIH HK+ +EA
Sbjct: 120 SSEVSPARVVRAVGELAKAIGTEGLVAGQVVDIS----NVGLEHLKFIHLHKTAALLEAS 175
Query: 63 XXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYP 122
R+R + +C+G+ +Q+ +DI+DV + K TYP
Sbjct: 176 AVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDV-------------TIADKLTYP 222
Query: 123 KLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
KL+G+++S+ +A++L +A+ +L FD K APL L N++ + N
Sbjct: 223 KLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 268
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXX 64
+ P+ ++ I E+ A G G+ GQ++D+SSE K++SL+EL +H HK+ ++A
Sbjct: 131 SAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVR 190
Query: 65 X-XXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYP 122
++ Y +G+A+Q+ +DI+D+ ET +T D KATYP
Sbjct: 191 MGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYP 250
Query: 123 KLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164
KL+G+D +K L +A +++ F K+ PL L N+++
Sbjct: 251 KLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYII 291
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 15 IVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXX 74
I E++SA G G+ GQ +D+ +EGK V L L IHRHK+ + A
Sbjct: 143 ISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKG 202
Query: 75 XXXXRMRN-YGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDESKN 132
+ + Y + +G+A+Q+ +DI+DV+G T + G D GK+TYP L+G+++++
Sbjct: 203 RRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 262
Query: 133 YAKELLAKAKQEL 145
A++L+ A+Q L
Sbjct: 263 KARDLIDDARQSL 275
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 15 IVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXX 74
I E++SA G G+ GQ +D+ +EGK V L L IHRHK+ + A
Sbjct: 142 ISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKG 201
Query: 75 XXXXRMRN-YGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDESKN 132
+ + Y + +G+A+Q+ +DI+DV+G T + G D GK+TYP L+G+++++
Sbjct: 202 RRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 261
Query: 133 YAKELLAKAKQEL 145
A++L+ A+Q L
Sbjct: 262 KARDLIDDARQSL 274
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 15 IVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXX 74
I E++SA G G+ GQ +D+ +EGK V L L IHRHK+ + A
Sbjct: 166 ISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKG 225
Query: 75 XXXXRMRN-YGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDESKN 132
+ + Y + +G+A+Q+ +DI+DV+G T + G D GK+TYP L+G+++++
Sbjct: 226 RRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 285
Query: 133 YAKELLAKAKQEL 145
A++L+ A+Q L
Sbjct: 286 KARDLIDDARQAL 298
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 14 AIVE-MSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXX 72
A++E ++ A G G+ GQ +D++S GK + L L +H K+ + A
Sbjct: 146 AMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPG 205
Query: 73 XXXXX-XRMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDES 130
R+ +Y KC+G+A+Q+ +DI+D +T +T G+D K YP L+G+ +
Sbjct: 206 LPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGA 265
Query: 131 KNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164
K A+E+ A + LA F P +A L L F++
Sbjct: 266 KEKAEEMHEAALESLAGFGP-EADLLRELARFII 298
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXX 71
LR + ++ A G G GQ +D+ S G + L + HRHK+ +EA
Sbjct: 146 LRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASG 205
Query: 72 XXXXXXXR-MRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDE 129
+ ++ Y + +G+A+Q+ +DI+DV T + G D+ R K TYP L+G+
Sbjct: 206 RAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAA 265
Query: 130 SKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164
+K YA EL +A L FD A A PL L ++V
Sbjct: 266 AKEYALELRDQALHALRPFD-AAAEPLRELARYIV 299
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXX 71
LR + ++ A G G GQ +D+ S G + L + HRHK+ +EA
Sbjct: 139 LRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQALEYXHRHKTGALIEASVILGALASG 198
Query: 72 XXXXXXXR-MRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDE 129
+ ++ Y + +G+A+Q+ +DI+DV T + G D+ R K TYP L+G+
Sbjct: 199 RAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAA 258
Query: 130 SKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164
+K YA EL +A L FD A A PL L ++V
Sbjct: 259 AKEYALELRDQALHALRPFD-AAAEPLRELARYIV 292
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
Query: 11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVE-AXXXXXXXX 69
+L+A+ E S G++G+ GQ +D+++E + +SL EL IHR+K+ + A
Sbjct: 147 MLQALAEAS---GAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAA 203
Query: 70 XXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGID 128
+ Y + VG+A+Q+ +DI+D+I ET + G D K+TYP L+G++
Sbjct: 204 GEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLE 263
Query: 129 ESKNYA 134
++ A
Sbjct: 264 GAQQKA 269
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEAXXXXXXXXX 70
L+A ++ A GS+G+ GQI+DI +E K ++SL EL+++H K+ + ++A
Sbjct: 167 LKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLA 226
Query: 71 XXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATYPKLVGIDE 129
++ +G +G+A+Q+ +DI+DV+G + + + +D K Y + G++E
Sbjct: 227 EASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEE 286
Query: 130 SK 131
K
Sbjct: 287 CK 288
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 8 PDRLLRAIVE-MSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXX 66
P + A+V+ +++A G G+ AGQ DI SE ++ LS+L +H+ K+ +
Sbjct: 137 PATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAG 196
Query: 67 XXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV 125
+ G+A+Q+++DI+DV+ SP E + T +D K TYP +
Sbjct: 197 LILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKL 256
Query: 126 GI 127
G+
Sbjct: 257 GL 258
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 18 MSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXXXX 77
+S+ G +G+ GQ +D E ++L +L F+H HK+ K + A
Sbjct: 159 LSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEEL 218
Query: 78 XR-MRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135
+ ++ +G +G+ +Q+ +DI+DV E+ +TT D K ++ L+G++ + NYA+
Sbjct: 219 FKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERANNYAQ 276
Query: 136 ELLAKAKQELAYFDPA 151
L + +L PA
Sbjct: 277 TLKTEVLNDLDALKPA 292
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 18 MSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXXXX 77
+S+ G +G+ GQ +D E ++L +L F+H HK+ K + A
Sbjct: 152 LSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEEL 211
Query: 78 XR-MRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135
+ ++ +G +G+ +Q+ +DI+DV E+ +TT D K ++ L+G++ + NYA+
Sbjct: 212 FKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERANNYAQ 269
Query: 136 ELLAKAKQELAYFDPA 151
L + +L PA
Sbjct: 270 TLKTEVLNDLDALKPA 285
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXX 71
++ I ++ G G GQ +D E K +SL+EL F+H HK+ + + A
Sbjct: 132 IKLIKTLAFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKXGCEICE 191
Query: 72 XXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKATYPKLVGIDES 130
++ G +G+ +Q+ +DI+DV S E + + T D+ K ++ L+G++++
Sbjct: 192 LNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDI--HKNSFVNLLGLEQA 249
Query: 131 KNYAKELLAKAKQELAYFDPAKAAPLDHLV 160
+ LL + +Q+L + A + +L+
Sbjct: 250 IKTKENLLNECEQDLEKLNEKLAQXIQNLI 279
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 17 EMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXXX 76
+++ A G++G+ +GQ+ DI E ++L EL +H K+ +E
Sbjct: 148 QLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEV 207
Query: 77 XXRMRNYGKCVGMAYQLWNDIVDVIGS-PETKETTGRDMLRGKATYPKLVGIDESKNYAK 135
+ + G+A+Q+ +D++D + + + GRD K+TYP L+GI +K+
Sbjct: 208 IGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALT 267
Query: 136 ELLAKAKQELAYFDPAKA-AP---LDHLVNFMVSFD 167
LA+ A + KA P +HL N +
Sbjct: 268 HQLAEGS---AVLEKIKANVPNFSEEHLANLLTQLQ 300
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 7 SPDRL-----LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEA 61
S DRL ++ + +S A G G+ GQ++D+ SEG+ + L L IH+ K+ +
Sbjct: 125 SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTF 184
Query: 62 XXXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGS-PETKETTGRDMLRGKAT 120
+ +Y +GM +Q+ +D++D G + + G D+ K+T
Sbjct: 185 AVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKST 244
Query: 121 YPKLVGIDESKN 132
Y L+G D +++
Sbjct: 245 YVSLLGKDGAED 256
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 15 IVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNF-IHRHKSEKFVEAXXXXXXXXXXXX 73
I+ + S++G + LA G+++ +S+ E+ F + R K+ A
Sbjct: 134 IIRLVSSLG-QKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVG 192
Query: 74 XXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKN- 132
R G+ +G+ +Q+ +DI D S + + TG DML GK T P L ++ +K+
Sbjct: 193 EEEVAFARLLGEYIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTTKDA 252
Query: 133 YAKELLAKAKQ 143
+A+++ K K+
Sbjct: 253 WAEQIAFKVKE 263
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 23 GSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXXXXXRMRN 82
G+EG+ GQ +DI++E V L+ L+ I R ++ K +
Sbjct: 146 GAEGMVYGQALDIAAETAAVPLT-LDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTA 204
Query: 83 YGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVGIDESKNYAKE 136
Y +G+A+Q+ +DI+DV G+ E + G+D KAT+ L+G+ +K+ A +
Sbjct: 205 YATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 259
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 23 GSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXXXXXRMRN 82
G+EG GQ +DI++E V L+ L+ I R ++ K +
Sbjct: 145 GAEGXVYGQALDIAAETAAVPLT-LDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTA 203
Query: 83 YGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLVGIDESKNYAKE 136
Y +G+A+Q+ +DI+DV G+ E + G+D KAT+ L+G+ +K+ A +
Sbjct: 204 YATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 258
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDESKNYAKELL 138
+R+YG +G+A+QL +D +D G+ ET + G D GKAT P L+ I S E
Sbjct: 217 LRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFW 276
Query: 139 AKA 141
+A
Sbjct: 277 ERA 279
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATYPKLVGIDESKNYAKEL 137
++N+G VGM +Q+ +DI+D+ + E+ +T G D+ G T P L + E EL
Sbjct: 225 LKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAEL 283
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 79 RMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGI 127
++ +G C+GM+YQ+ +DI+D T + G D+ G TYP + I
Sbjct: 195 HIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAI 244
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 32 IMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXXXXXRMRNYGKCVGMAY 91
+D+++E K + + K+ + R+R +G+ +G+++
Sbjct: 199 ALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSF 258
Query: 92 QLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDP 150
QL +D++D+ T + TG+D RGK T L G ++ +E +A+A + LA +
Sbjct: 259 QLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318
Query: 151 AKAAPLDHLVNFMV 164
KAA L F+
Sbjct: 319 -KAAILIAAARFIA 331
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 10 RLLRAIVEMSSAIGSEGLAAGQIMDISSEGKD-VSLSELNFIHRHKSEKFVEAXXXXXXX 68
R+L IV+ S+ L GQ D+ E K V++ E + K+ EA
Sbjct: 137 RVLEVIVKASNE-----LCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGI 191
Query: 69 XXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKAT 120
+ ++G+ VG+A+Q+W+D++D+I + + G D+ +GK T
Sbjct: 192 IGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKT 244
>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDIS 36
T+N +PDR+LRAI+E++ +GSEG+ GQ ++
Sbjct: 130 TRN-NPDRILRAIIELTRVMGSEGIVEGQYHELG 162
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 1 MKTKNVSPDRLLRAIVE-MSSAIGSEGLAAGQIMDISSEGKD-VSLSELNFIHRHKSEKF 58
M+ + P + AI + + +A G G+ +GQ +D+S K V+ +L IH K+ K
Sbjct: 133 MRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKL 192
Query: 59 VEAX-XXXXXXXXXXXXXXXXRMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGR--DML 115
+ A +R YGK +G+ +Q+ +D +D+ +P GR D
Sbjct: 193 ILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLY-APTQILGKGRSSDQA 251
Query: 116 RGKATYPKL 124
K T+ L
Sbjct: 252 NQKTTFATL 260
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 24 SEGLAAGQIMDISSEGKD-VSLSELNFIHRHKSEKFVEAXXXXXXXXXXXXXXXXXRMRN 82
S L GQ DIS E +D VS+ E + +K+ + +
Sbjct: 152 SRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEK 211
Query: 83 YGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKATYP 122
YG +G+A+Q +D++ + G P+ T + T D+ + K + P
Sbjct: 212 YGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLP 252
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKAT 120
+ +YG +G+A+QL +D++ V G P T + G D+ GK T
Sbjct: 242 LLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRT 283
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 82 NYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATYPKLVGI---DES-KNYAKE 136
+YG +G+A+Q+ +D++D G S E + TG D K T P + + DE+ + + K
Sbjct: 207 DYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKR 266
Query: 137 LLAKAKQE 144
++ K Q+
Sbjct: 267 VIEKGDQQ 274
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 83 YGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATYPKLVGIDE 129
YG+ +G+A+QL +DI+D G S + + D+ G T P L ++E
Sbjct: 222 YGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEE 269
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 83 YGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATYPKLVGIDE 129
YG+ +G+A+QL +DI+D G S + + D+ G T P L ++E
Sbjct: 222 YGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEE 269
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 79 RMRNYGKCVGMAYQLWNDIVDVIGSPETKE 108
R R+ G +G AYQ+ +DI+D G P+ +
Sbjct: 208 RTRDIGIAIGCAYQMLDDILDYAGDPKRTQ 237
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 79 RMRNYGKCVGMAYQLWNDIVDVIGSPETKE 108
R R+ G +G AYQ+ +DI+D G P+ +
Sbjct: 201 RTRDIGIAIGCAYQMLDDILDYAGDPKRTQ 230
>pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 8 PDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXX 67
PDR+LR I+E+S A G EG+ +G + + SL + ++ + K +
Sbjct: 132 PDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGA 191
Query: 68 XXXXXXXXXXXRMRNYG 84
++RN+G
Sbjct: 192 ILGGAAEEEIQKLRNFG 208
>pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 8 PDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAXXXXXX 67
PDR+LR I+E+S A G EG+ +G + + SL + ++ + K +
Sbjct: 122 PDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGA 181
Query: 68 XXXXXXXXXXXRMRNYG 84
++RN+G
Sbjct: 182 ILGGAAEEEIQKLRNFG 198
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129
+ N G +G YQ+++DI+D G + + D+ G A++P + +++
Sbjct: 189 LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEK 238
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGK----ATYPKLVGIDESKN--- 132
M G+ G+A+Q+++D+ D++GS E G+D+ GK T VGI ++
Sbjct: 198 MXLLGEXFGVAFQIYDDLXDILGS---FEKVGKDL--GKDTEXVTLVXXVGIQXAREMAD 252
Query: 133 -YAKELLAKAKQE 144
Y +E+L + E
Sbjct: 253 XYYEEVLXGIESE 265
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 82 NYGKCVGMAYQLWNDIVDVIGSPE 105
N+G G+A+Q+ +D++D+ G P+
Sbjct: 212 NFGMAAGVAFQIIDDVLDIYGDPK 235
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 79 RMRNYGKCVGMAYQLWNDIVDVIGSPETKET 109
R ++G +G AYQ+ +DI++ + E KE+
Sbjct: 191 RFSHFGNALGTAYQIVDDILEFLEVVEGKES 221
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDES---------KNYAKEL 137
+G +Q+ +D +D+ G G D+ K T+P + + KNY K
Sbjct: 279 MGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNN 338
Query: 138 LAKAK 142
LA K
Sbjct: 339 LACVK 343
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDES---------KNYAKEL 137
+G +Q+ +D +D+ G G D+ K T+P + + KNY K
Sbjct: 278 MGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNN 337
Query: 138 LAKAK 142
LA K
Sbjct: 338 LACVK 342
>pdb|2LKG|A Chain A, Wsa Major Conformation
pdb|2LKH|A Chain A, Wsa Minor Conformation
Length = 140
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 9 DRLLRAIVEMSSAIGSEGLAAGQIMDISSE 38
D +L+ + + IG+E + AG+++++S E
Sbjct: 13 DHILKCVFDKICKIGTESVEAGRLIELSQE 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,310,596
Number of Sequences: 62578
Number of extensions: 143976
Number of successful extensions: 458
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 75
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)