BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042175
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 120/168 (71%), Gaps = 2/168 (1%)
Query: 3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG-KDVSLSELNFIHRHKSEKFVEA 61
TK VS +R++R + E++ IGSEGL AGQ++D+ SEG DV L L FIH HK+ +E
Sbjct: 190 TKGVSSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEG 249
Query: 62 SIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKAT 120
S+V G I+GG N+E+I ++R + +C+G+ +Q+ +DI+DV S E +T G+D++ K T
Sbjct: 250 SVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVT 309
Query: 121 YPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
YPKL+GID+S+ +A++L +A+++LA FDP KAAPL L N++ DN
Sbjct: 310 YPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/170 (46%), Positives = 124/170 (72%), Gaps = 2/170 (1%)
Query: 1 MKTKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFV 59
+ T NVS R++RA+ E++ AIG+EGL AGQ++DI+SEG +V L +L FIH HK+ K +
Sbjct: 201 VSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLL 260
Query: 60 EASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGK 118
E ++V G I+GGG +EE+E++R Y + +G+ +Q+ +DI+DV S E +T G+D++ K
Sbjct: 261 EGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADK 320
Query: 119 ATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
TYPKL+GI++S+ +A++L +A+++LA FDP KAAPL L N++ N
Sbjct: 321 VTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 120/170 (70%), Gaps = 4/170 (2%)
Query: 3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKD---VSLSELNFIHRHKSEKFV 59
+ VSP R++RA+ E++ AIG+EGL AGQ++DISSEG D V L L FIH HK+ +
Sbjct: 197 SSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALL 256
Query: 60 EASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGK 118
EAS V G IIGGG++EEIER+R + +C+G+ +Q+ +DI+DV S E +T G+D++ K
Sbjct: 257 EASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADK 316
Query: 119 ATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
TYPKL+G+++S+ +A++L +A+ +L FD K APL L N++ + N
Sbjct: 317 LTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 118/167 (70%), Gaps = 4/167 (2%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEAS 62
VSP R++RA+ E++ AIG+EGL AGQ++DISSEG DV L L FIH HK+ +EAS
Sbjct: 205 VSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEAS 264
Query: 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKATY 121
V G I+GGG+++EIER+R + +C+G+ +Q+ +DI+DV S E +T G+D++ K TY
Sbjct: 265 AVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTY 324
Query: 122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
PK++G+++S+ +A++L +A+ +L FD K APL L N++ N
Sbjct: 325 PKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 121/167 (72%), Gaps = 4/167 (2%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKD---VSLSELNFIHRHKSEKFVEAS 62
V+P+R++RA+VE++ AIG+ GL AGQ++D++SE + V L L FIH HK+ +EA+
Sbjct: 194 VAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAA 253
Query: 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATY 121
V GVI+GGG EEEIE++R Y +C+G+ +Q+ +DI+DV S E +T G+D++ GK TY
Sbjct: 254 AVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTY 313
Query: 122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
P+L+G++ SK A++L +A+++L FDP+KAAPL L +++ N
Sbjct: 314 PRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 118/167 (70%), Gaps = 4/167 (2%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEAS 62
VSP R++RAI E++ AIGS+GL AGQ++D++S G DV L L FIH HK+ +EA+
Sbjct: 181 VSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLLEAA 240
Query: 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKATY 121
V G I+GGG++EE+E++R + +C+G+ +Q+ +DI+DV S E +T G+D++ K TY
Sbjct: 241 TVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTY 300
Query: 122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
PKL+G+++SK++A +LL+ A ++L FD ++ PL L N++ N
Sbjct: 301 PKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPLLALANYIAKRQN 347
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 114/168 (67%), Gaps = 2/168 (1%)
Query: 3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEA 61
T V+P R++ A+ E++ +IG+EGL AGQ+ DI G VSL L FIH HK+ +E+
Sbjct: 202 TAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLES 261
Query: 62 SIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKAT 120
S+V G I+GGG E+E++R + +C+G+ +Q+ +DI+DV S E +T G+D++ K T
Sbjct: 262 SVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTT 321
Query: 121 YPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
YPKL+G++++K +A EL +AKQ+L FD KAAPL L +++ DN
Sbjct: 322 YPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 117/162 (72%), Gaps = 4/162 (2%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSE---GKDVSLSELNFIHRHKSEKFVEAS 62
V+ +R++RA+VE++ AIG++GL AGQ++D+SSE DV L L FIH HK+ +EA+
Sbjct: 195 VASERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEAA 254
Query: 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATY 121
V G I+GGG EEEIE++R Y +C+G+ +Q+ +DI+DV S E +T G+D++ GK TY
Sbjct: 255 AVIGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTY 314
Query: 122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFM 163
P+L+G++ S+ A++L +A+++L F+ KAAPL L +++
Sbjct: 315 PRLIGLERSREVAEKLSREAEEQLLGFESDKAAPLVALASYI 356
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 121/167 (72%), Gaps = 4/167 (2%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKD---VSLSELNFIHRHKSEKFVEAS 62
V+P++++RA+VE++ AIG+ GL AGQ++D++SE + V L L FIH HK+ +EA+
Sbjct: 194 VAPEKMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAA 253
Query: 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATY 121
V GVI+GGG E+EIE++R Y +C+G+ +Q+ +DI+DV S E +T G+D++ GK TY
Sbjct: 254 AVLGVIMGGGTEQEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTY 313
Query: 122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
P+L+G++ S+ A++L +A+++L FDP+KAAPL L +++ N
Sbjct: 314 PRLIGLEGSREVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 108/167 (64%), Gaps = 4/167 (2%)
Query: 1 MKTKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKD---VSLSELNFIHRHKSEK 57
M T +S +R++ A+ E++ +IG+ GL AGQ MDISSEG D V L L FIH HK+
Sbjct: 205 MTTAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAV 264
Query: 58 FVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVD-VIGSPETKETTGRDMLR 116
+E + V G IIGGG++EEIE +R + +C+G+ +Q+ +DI+D S E +T G+D L
Sbjct: 265 LLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLA 324
Query: 117 GKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFM 163
GK TYPKL+G+++SK + K L A+Q L F K APL L F+
Sbjct: 325 GKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFI 371
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 114/169 (67%), Gaps = 7/169 (4%)
Query: 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG----KDVSLSELNFIHRHKSEKFVE 60
+V P+R+L+ + EM A+ EGL AGQ D++ EG D L L FIH HK+ +E
Sbjct: 178 DVPPERILKTVQEMVKAV--EGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTAALLE 235
Query: 61 ASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVI-GSPETKETTGRDMLRGKA 119
A+ V G I+GGG++EEIER+R+Y +C+G+ +Q+ +D++DV S E +T G+D++ GK
Sbjct: 236 AAAVMGAIMGGGSDEEIERLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAGKL 295
Query: 120 TYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
TYP+L+G+++SK YA+ L +A++ L FD K APL L +++V+ N
Sbjct: 296 TYPRLMGVEKSKEYAERLNIEAREHLLGFDIDKVAPLVSLADYIVNRQN 344
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 117/167 (70%), Gaps = 4/167 (2%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEAS 62
V+P+R++RA++E++ AIG++GL AGQ+ D+ S+G DV L L FIH HK+ +EA+
Sbjct: 191 VAPERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLNPDDVGLERLEFIHLHKTAALLEAA 250
Query: 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATY 121
V G I+GGG EEEIE++R Y +C+G+ +Q+ +DI+DV S E +T G+D++ GK TY
Sbjct: 251 AVLGAIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTESTKELGKTAGKDVMAGKLTY 310
Query: 122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
P+L+G++ S+ A++L +A ++L FD KAAPL L +++ N
Sbjct: 311 PRLIGLERSREVAEKLRREAAEQLLGFDSDKAAPLVALASYIACRHN 357
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 112/163 (68%), Gaps = 4/163 (2%)
Query: 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEA 61
+VS +++RA+ E++ +IG++GL AGQ D+SSEG DV L +L +IH HK+ +EA
Sbjct: 205 DVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEA 264
Query: 62 SIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVD-VIGSPETKETTGRDMLRGKAT 120
S V G +IGGG E+EIE++RN+ +C+G+ +Q+ +DI+D S E +T G+D + GK T
Sbjct: 265 SAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLT 324
Query: 121 YPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFM 163
YPK++G+++SK + ++L A++ L FD K PL L NF+
Sbjct: 325 YPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFI 367
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 115/167 (68%), Gaps = 4/167 (2%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG---KDVSLSELNFIHRHKSEKFVEAS 62
V+P+R++R++ E++ AIG++GL AGQ+ D+ S+G DV L L FIH HK+ +EA+
Sbjct: 194 VAPERMIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHLHKTAALLEAA 253
Query: 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATY 121
V G IIGGG EEEI+++R YG+C+G+ +Q+ +DI+DV S E +T G+D++ K TY
Sbjct: 254 AVLGAIIGGGTEEEIQKLRKYGRCIGLLFQVVDDIIDVTESTEELGKTAGKDVMARKLTY 313
Query: 122 PKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
P+L+G++ S+ A++L +A ++L FD K APL L +++ N
Sbjct: 314 PRLIGLERSREVAEKLRREAAEQLLGFDSNKVAPLVALASYIACRHN 360
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 115/169 (68%), Gaps = 3/169 (1%)
Query: 2 KTKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVE 60
+TKNV D +++ I +++ ++ + GL GQI+D+SSEGK D +L LNFIH HK+ +E
Sbjct: 133 QTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLE 192
Query: 61 ASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKA 119
A+++SG ++ G E+++ R Y + +G+A+Q+ +D++D+I + E ++ G+D+ KA
Sbjct: 193 AAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKA 252
Query: 120 TYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
TYP G++ES A+ L+ +AK+E+ YFD KA PL + +F+V+ +N
Sbjct: 253 TYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 112/169 (66%), Gaps = 6/169 (3%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSE-----GKDVSLSELNFIHRHKSEKFVE 60
V+ +R+LRA+ EM+ A+G+EGL AGQ D++ E +D L L +H HK+ VE
Sbjct: 168 VTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVE 227
Query: 61 ASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVD-VIGSPETKETTGRDMLRGKA 119
A+ V G I+GGG++EEIER+++Y +CVG+ +Q+ +D++D S E +T G+D++ GK
Sbjct: 228 AAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKL 287
Query: 120 TYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168
TYPK++G+D ++ YAK L +A++ L FD K PL L +++V N
Sbjct: 288 TYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 12/145 (8%)
Query: 4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASI 63
+ + P LR I ++ A G EG+ AGQ D+ EGK ++LSEL +IHRHK+ K ++ S+
Sbjct: 133 ERIPPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHRHKTGKMLQYSV 192
Query: 64 VSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKATYP 122
+G +IGG + + + + +G+A+Q+ +DI+D+ G+ E + G D KATYP
Sbjct: 193 HAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYP 252
Query: 123 KLVGIDESKNYAKELLAKAKQELAY 147
L+ LA AK++LA+
Sbjct: 253 ALLS-----------LAGAKEKLAF 266
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 15 IVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGN- 73
I E++SA G G+ GQ +D+ +EGK V L L IHRHK+ + A++ G + G
Sbjct: 142 ISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKG 201
Query: 74 EEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDESKN 132
+ + Y + +G+A+Q+ +DI+DV+G T + G D GK+TYP L+G+++++
Sbjct: 202 RRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARK 261
Query: 133 YAKELLAKAKQEL 145
A++L+ A+Q L
Sbjct: 262 KARDLIDDARQSL 274
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGG 71
L I +S+A GS G+ GQ++D+ E K ++L+EL IH HK+ + + A+IVS II
Sbjct: 135 LSLINLLSTASGSNGMVYGQMLDMQGEHKTLTLNELERIHIHKTGELIRAAIVSAGIIMN 194
Query: 72 GNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDES 130
N+ +IE++ GK VG+ +Q+ +DI+DV GS E +T G D+ K+TY L+G++ S
Sbjct: 195 FNDAQIEQLNIIGKNVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLEAS 254
Query: 131 KNYAKELLAKAKQELAYFDP 150
K + L + L P
Sbjct: 255 KQLLNDKLTETYDALKTLQP 274
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Query: 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVS 65
VS ++ LR + E+ SA G+EG+ GQ+ D+ +E + V+L EL IH K+ K + +++
Sbjct: 134 VSAEKRLRLVNELISAAGTEGMVGGQVADMEAENRQVTLEELESIHERKTAKLLGFCVIA 193
Query: 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKATYPKL 124
G I+ EE+IE +R + +G+ +Q+ +DI+D+ GS E + G D K+TYP L
Sbjct: 194 GAILADAPEEDIETLRTFSSHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSL 253
Query: 125 VGIDESKNYAKELLAKAKQ 143
+ ++ +K+ + +AK+
Sbjct: 254 LSLEGAKHKLDVHIKEAKR 272
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 9/168 (5%)
Query: 2 KTKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEA 61
KT N+S ++ L I ++ G +G+ GQ +D+ SE K +SLSEL IHR+K+ + A
Sbjct: 128 KTPNISTEQKLALIQILAQGAGVQGMCLGQSLDLISEHKQISLSELELIHRNKTGALLIA 187
Query: 62 SIVSGVIIGGG-NEEEIER-MRNYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGK 118
++ G I ++ +E+ + Y + +G+A+Q+ +DI+D+ G S E + G D+ K
Sbjct: 188 ALKLGFICSPHFTDKRLEQSLTQYAEAIGLAFQVQDDILDIEGDSAEIGKQVGADLDLDK 247
Query: 119 ATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSF 166
+TYPKL+G+ +K A++L A EL + P D V + F
Sbjct: 248 STYPKLLGLSGAKQKAQDLYQSALSEL------EKIPFDTTVRALAEF 289
>sp|Q45220|ISPA_BRAJA Probable farnesyl diphosphate synthase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=fppS PE=3 SV=1
Length = 332
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 7 SPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSG 66
SP L+R E++ A+ +EG A GQ +D+S GK V L + +HR KS V AS+ G
Sbjct: 164 SPIALVR---ELAQAVSAEGAAGGQAIDLSLVGKHVELDRIVAMHRMKSGALVRASVRMG 220
Query: 67 VIIGGG----NEEEIERMRNYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATY 121
+ G + + +Y C G+A Q+ +DI+DV + +T G+D K T
Sbjct: 221 ALCAVGVNAAHAALYCALDHYSACFGLALQVIDDILDVTADTAALGKTPGKDAAAQKPTC 280
Query: 122 PKLVGIDESKNYAKELLAKAKQELAYFDP 150
++G+ E++ +A +LL A + +A P
Sbjct: 281 ASIMGLQEARQFALDLLRDAGEAIAPLGP 309
>sp|P57537|ISPA_BUCAI Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ispA PE=3 SV=1
Length = 282
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 83/139 (59%), Gaps = 6/139 (4%)
Query: 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIV 64
NVS + ++ I E+S +IGS G+ GQ +D+ +E KDV+LSEL I+ +K+ F+ S V
Sbjct: 132 NVSNLKRIKMISELSYSIGSSGMCMGQNLDLEAEKKDVNLSELEIINLYKTS-FLMRSAV 190
Query: 65 SGVIIGGGNEEE--IERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYP 122
V N + + + + +G+A+Q+ +DI+D ++ +T + +++ K TYP
Sbjct: 191 RLVYFSSNNFSKSILSILDLFSISIGLAFQIQDDILDF--KKDSVKTDNKKIIK-KHTYP 247
Query: 123 KLVGIDESKNYAKELLAKA 141
++G+DES+ K+L K+
Sbjct: 248 LIIGLDESRKKIKQLHKKS 266
>sp|P55539|ISPA_RHISN Probable farnesyl diphosphate synthase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a02750 PE=3 SV=1
Length = 332
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 15 IVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIG---- 70
+ E++ A+ +EG A GQ MD+S GK V L + +HR K V AS+ G +
Sbjct: 169 VRELAQAVSAEGAAGGQAMDLSLVGKHVELDRIVAMHRMKCGALVRASVRMGALCAIAED 228
Query: 71 GGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDE 129
+ + +Y C G+A Q+ +DI+D T +T G+D K T ++G+
Sbjct: 229 AADATLYCALDHYSACFGLALQVVDDILDATADTATLGKTPGKDAAAQKPTCASIMGLQA 288
Query: 130 SKNYAKELLAKAKQELAYFDP 150
++ +A +LL +A + +A P
Sbjct: 289 ARQFALDLLCEAGEAIAPLGP 309
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIG 70
+LR I E++ +GS G+AAGQ +D+ EG LS F+ K E S V G ++G
Sbjct: 182 ILRLITEIARTVGSTGMAAGQYVDL--EGGPFPLS---FVQEKKFGAMGECSAVCGGLLG 236
Query: 71 GGNEEEIERMRNYGKCVGMAYQLWNDIVD 99
G E+E++ +R YG+ VGM YQ+ +DI +
Sbjct: 237 GATEDELQSLRRYGRAVGMLYQVVDDITE 265
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 10/134 (7%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGG 71
L+ I E S+AIG G+ GQ++D+ E K +++SEL I+ +K+ + SI
Sbjct: 139 LKMIAEFSNAIGYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIRLAYFASN 198
Query: 72 GNEEEIERMRN-YGKCVGMAYQLWNDIVDV---IGSPETKETTGRDMLRGKATYPKLVGI 127
+E+ + + + +G+A+Q+ +DI+D+ I E+K + K TYP L+G+
Sbjct: 199 NFSKEVLFILDKFSVSIGLAFQIQDDILDLKNDIKKLESKRN------KTKNTYPLLIGL 252
Query: 128 DESKNYAKELLAKA 141
+SK KEL +A
Sbjct: 253 KKSKIKIKELYKEA 266
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 37/176 (21%)
Query: 27 LAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKC 86
+ GQ MD+ E ++ E + R K+ +EAS+ G ++ NEEE E ++ Y K
Sbjct: 149 VCEGQAMDMEFENYYPTMEEYLDMIRKKTGALLEASVGIGAVMADCNEEEREALKEYAKR 208
Query: 87 VGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKAT---YPKLVGIDESKN---------- 132
+G+ +Q+ +D++D+IG + + G D+ GK T L +DE K
Sbjct: 209 IGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALKTLDEDKKKRLLEILGNK 268
Query: 133 -------------------YAKELLAK----AKQELAYFDPAKAAPLDHLVNFMVS 165
YAKEL+ + AK+ L F+ + L+ L +F++S
Sbjct: 269 NVKDEEIKEAIEILKPSIEYAKELMKQKTEEAKEYLKIFNKDRRKVLEDLADFIMS 324
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 13 RAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGG 72
RA+ E+S+AIG +GL GQ D+S K S + + K+ AS+ I+
Sbjct: 148 RAVSELSNAIGMQGLVQGQFKDLSEGDKPRSAEAILMTNHFKTSTLFCASMQMASIVANA 207
Query: 73 NEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKN 132
+ E + + + +G A+QL +D+ D G +T + + +D GK+T L+G +
Sbjct: 208 SSEARDCLHRFSLDLGQAFQLLDDLTD--GMTDTGKDSNQDA--GKSTLVNLLGPRAVEE 263
Query: 133 YAKELLAKAKQELA 146
++ L A + L+
Sbjct: 264 RLRQHLQLASEHLS 277
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKL 124
G I+GGG+ +EI + +YG+C+G+A+Q+ +D +DV+ E+ + G D+ GK T +
Sbjct: 185 GAIMGGGSPQEIAALEDYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVV 244
Query: 125 VGIDESKNYAKELL 138
++ + +E L
Sbjct: 245 KALERASEKDRERL 258
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKL 124
G I+GG +E E+E + +YGK +G+A+Q+ +D +DV+ E+ + G D+ GK T +
Sbjct: 185 GAIMGGASEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVV 244
Query: 125 VGIDESKNYAKELL 138
++E+ +E L
Sbjct: 245 KALEEASEEDRERL 258
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 52 RHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETT 110
R K+ + AS G + G E ++R+ +G VGM++Q+ +DI+D G+ E +
Sbjct: 168 RRKTALLIAASCQLGALAAGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPA 227
Query: 111 GRDMLRGKATYPKLVGIDESK 131
G D+L+G T P L + + +
Sbjct: 228 GSDLLQGNVTLPVLYALSDER 248
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 8 PDRLLRAIVEMSSAIGSEGLAAGQIMDISSEG-KDVSLSE-LNFIHRHKSEKFVEASIVS 65
P R+L+ + +S + GQ +D+ E K V+ SE L + + S + A+ +
Sbjct: 131 PVRVLKCMDVLSKTCTE--ICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAAAAKI- 187
Query: 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKL 124
G ++GG ++E E + YG+ +G+ +Q+++D++D+ E + G D++ GK T L
Sbjct: 188 GALLGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYT---L 244
Query: 125 VGIDE-SKNYAKELLAKAKQELAYFDPA-----KAAPLDHLVNFMVSF 166
+ I+ K ++ K + L + A + LD++ N +S+
Sbjct: 245 IVINAFEKGVKLDIFGKGEATLEETEAAVRTLTECGSLDYVKNLAISY 292
>sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthase OS=Escherichia vulneris
GN=crtE PE=3 SV=1
Length = 307
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Query: 3 TKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEAS 62
T ++ +R +A+ E+S+A+G +GL GQ D++ D + + + K+ A
Sbjct: 137 TGDLPGERRAQAVNELSTAVGVQGLVLGQFRDLNDAALDRTPDAILSTNHLKTGILFSAM 196
Query: 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYP 122
+ I + E + + G A+QL +D+ D PET + +D GK+T
Sbjct: 197 LQIVAIASASSPSTRETLHAFALDFGQAFQLLDDLRD--DHPETGKDRNKDA--GKSTLV 252
Query: 123 KLVGIDESKNYAKELLAKAKQELAYFDPAKAA 154
+G D ++ +E + A + L + P A
Sbjct: 253 NRLGADAARQKLREHIDSADKHLTFACPQGGA 284
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 54 KSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGR 112
K+ +EAS G + +E+ ++ +G C+GM+YQ+ +DI+D T + G
Sbjct: 170 KTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGS 229
Query: 113 DMLRGKATYPKLVGI 127
D+ G TYP + I
Sbjct: 230 DIRNGHITYPLMAAI 244
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 31 QIMDISSEGKDVSLSELNFIH--RHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVG 88
Q+M+++ D SE N++ K+ + E + + I+ GG E + + +++YG+ +G
Sbjct: 155 QLMNVN----DPETSEANYMRVIYSKTARLFEVAGQAAAIVAGGTEAQEKALQDYGRYLG 210
Query: 89 MAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKL 124
A+QL +D++D + + + G D+ GK T P L
Sbjct: 211 TAFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLL 247
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIG 70
LRAI E + L GQ D + E + DV+L E + K+ + AS G ++
Sbjct: 163 LRAISE-----ATRELIRGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLA 217
Query: 71 GGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKATYPKLVGIDE 129
G E + YG+ +G+A+QL +D++ + G PE T + D+ K T P +
Sbjct: 218 GAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTWTVAH 277
Query: 130 SKNYAKELLA 139
+ + L A
Sbjct: 278 GGSAGRRLAA 287
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIG 70
LRAI E + L GQ D + E + DV+L E + K+ + AS G ++
Sbjct: 163 LRAISE-----ATRELIRGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLA 217
Query: 71 GGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPE-TKETTGRDMLRGKATYPKLVGIDE 129
G E + YG+ +G+A+QL +D++ + G PE T + D+ K T P +
Sbjct: 218 GAPRSVREALVAYGRHIGLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTWTVAH 277
Query: 130 SKNYAKELLA 139
+ + L A
Sbjct: 278 GGSAGRRLAA 287
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 53 HKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTG 111
+K+ + AS ++ G N + + YGK +G+A+Q+ +D++D+ GS ++ + G
Sbjct: 173 YKTASLIAASCRGAAMLNGSNHQINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPAG 232
Query: 112 RDMLRGKATYPKLVGIDE 129
D++ G T P L + +
Sbjct: 233 ADLINGNLTSPLLFSLTQ 250
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 27 LAAGQIMDISSE-GKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGK 85
A+G+I S+ D++L + +K+ + AS S I G + E+M YG+
Sbjct: 195 FASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGR 254
Query: 86 CVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDE 129
+G+++Q+ +DI+D S E + G D+ +G T P + + +
Sbjct: 255 NLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQD 299
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 27 LAAGQIMDISSE-GKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGK 85
A+G+I S+ DV+L + +K+ + +S S I G + E+M YG+
Sbjct: 226 FASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGR 285
Query: 86 CVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGI-DESK 131
+G+++Q+ +DI+D S E + G D+ +G T P + + DE K
Sbjct: 286 NLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPK 333
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 18 MSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRH--KSEKFVEASIVSGVIIGGGNEE 75
MS+A+ L G+ M S G +S N++ + K+ + S S I+ G +
Sbjct: 274 MSTALAE--LVEGEFMQAKSNG---VVSFDNYLQKTYLKTGSLITNSCRSAAILSGADSN 328
Query: 76 EIERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDE 129
I +GK +G+A+Q+ +D++D GS E + T D+ G AT P L E
Sbjct: 329 IINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQE 383
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 25 EGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNY 83
E ++ GQ MD+S E + DV+ E + + K+ S G II N++ ++++ Y
Sbjct: 147 EIISEGQAMDMSFENRLDVTEEEYIQMIKGKTAMLFSCSAALGGIINKANDDVVKKLTEY 206
Query: 84 GKCVGMAYQLWNDIVDVIGS-PETKETTGRDMLRGKATYPKLVGIDESKNYAKELL 138
G +G+++Q+ +DI+ +IG E + D+ GK T + + E+ K++L
Sbjct: 207 GLNLGISFQIVDDILGIIGDEKELGKPIYSDIREGKKTILVIKTLSEATEDEKKIL 262
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 23 GSEGLAAGQIMDISSEGKDVSLSE--LNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERM 80
G+ +A G+++ + ++ + + + L IH S F A+ G I G E E +
Sbjct: 142 GTCEIAEGEVLQLQAQHQPDTTEDIYLQIIHGKTSRLFELAT--EGAAILAGKPEYREPL 199
Query: 81 RNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDESKNYAKELLA 139
R + G A+Q+ +DI+D +T + G D++ GK T P + + ++ ++L+
Sbjct: 200 RRFAGHFGNAFQIIDDILDYTSDADTLGKNIGDDLMEGKPTLPLIAAMQNTQGEQRDLIR 259
Query: 140 KA 141
++
Sbjct: 260 RS 261
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIH--RHKSEKFVEASIVSGVII 69
L+ + MS A+ +A G+++ + + D ++E N++ K+ + EA+ I+
Sbjct: 129 LKVLEVMSEAVNV--IAEGEVLQLMNV-NDPDITEENYMRVIYSKTARLFEAAAQCSGIL 185
Query: 70 GGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKL 124
G EE + +++YG+ +G A+QL +D++D E + G D+ GK T P L
Sbjct: 186 AGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLL 241
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIH--RHKSEKFVEASIVSGVII 69
L+ + MS A+ +A G+++ + + D ++E N++ K+ + EA+ I+
Sbjct: 129 LKVLEVMSEAVNV--IAEGEVLQLMNV-NDPDITEENYMRVIYSKTARLFEAAAQCSGIL 185
Query: 70 GGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKL 124
G EE + +++YG+ +G A+QL +D++D E + G D+ GK T P L
Sbjct: 186 AGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLL 241
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 41 DVSLSELNFIHR--HKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIV 98
D S+S ++I + +K+ V AS ++ N + + YGK +G+A+Q+ +D++
Sbjct: 159 DPSISIDDYIEKSFYKTASLVAASCRGAAMLNDLNSQMHNDLYLYGKHMGLAFQIMDDVL 218
Query: 99 DVIGSPET-KETTGRDMLRGKATYPKLVGIDE 129
D+ GS ++ + +G D + G T P L + +
Sbjct: 219 DIAGSTKSLGKPSGADFMNGNLTAPILFALTQ 250
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 27 LAAGQIMDISSEGKDVSLSELNF---IHRHKSEKF-VEASIVSGVIIGGGNEEEIERMRN 82
+A G+++D+ E D S E ++ I++ + F + ASI G GG EE ER +
Sbjct: 147 MAEGEVLDLKLE--DESFGENDYFKCIYKKTASLFAISASI--GAYTGGAEEELAERFSH 202
Query: 83 YGKCVGMAYQLWNDIVDVIGSPETKET 109
+G +G AYQ+ +DI++ + E KE+
Sbjct: 203 FGNALGTAYQIVDDILEFLEVVEGKES 229
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 9 DRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGV 67
+R + A+ E+++ + GQ +D+ E + DV+ E + K+ A+
Sbjct: 149 ERSVEALDELATTCTE--ICEGQALDVDFENRSDVTTEEYLEMVEFKTAVLYAAAASIPA 206
Query: 68 IIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKATYPKLVG 126
I+ G ++E +E + YG +G A+Q+ +D++D+ S E + G D++ K T L
Sbjct: 207 ILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLVENKRTVITLHA 266
Query: 127 IDE 129
D+
Sbjct: 267 RDQ 269
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 52 RHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGS-PETKETT 110
+ K+ + S G I G +E+ + + +G VGM+YQ+ +DI+D + E +
Sbjct: 196 KRKTALLIAVSCQLGAIASGADEKIHKALYWFGYYVGMSYQIIDDILDFTSTEEELGKPV 255
Query: 111 GRDMLRGKATYPKLVGIDES--KNYAKELLAKAKQE 144
G D+L+G T P L + KN K + ++ QE
Sbjct: 256 GGDLLQGNVTLPVLYALKNPALKNQLKLINSETTQE 291
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 27 LAAGQIMDISSEGK-DVSLSE-LNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYG 84
++ GQ +D+ E + D+ E L+ I R + F +S + G +I G N+ ++ M ++G
Sbjct: 147 ISEGQAVDMEFEDRIDIKEQEYLDMISRKTAALFSASSSI-GALIAGANDNDVRLMSDFG 205
Query: 85 KCVGMAYQLWNDIVDVIGS-PETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKA-- 141
+G+A+Q+ +DI+ + E + D+ GK T + ++ K K+++ KA
Sbjct: 206 TNLGIAFQIVDDILGLTADEKELGKPVFSDIREGKKTILVIKTLELCKEDEKKIVLKALG 265
Query: 142 -----KQEL-AYFDPAKAAPLDHLVNF 162
K+EL + D K LD+ N
Sbjct: 266 NKSASKEELMSSADIIKKYSLDYAYNL 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,314,512
Number of Sequences: 539616
Number of extensions: 2544107
Number of successful extensions: 5404
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5281
Number of HSP's gapped (non-prelim): 105
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)