Query 042175
Match_columns 170
No_of_seqs 104 out of 1053
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10581 geranyltranstransfera 100.0 6.5E-37 1.4E-41 253.9 19.5 163 6-168 133-299 (299)
2 PLN02890 geranyl diphosphate s 100.0 6.4E-35 1.4E-39 250.7 19.0 156 11-168 225-422 (422)
3 COG0142 IspA Geranylgeranyl py 100.0 6.9E-35 1.5E-39 244.0 17.9 156 11-168 132-322 (322)
4 PRK10888 octaprenyl diphosphat 100.0 2.9E-34 6.3E-39 240.3 18.2 155 12-168 129-323 (323)
5 TIGR02748 GerC3_HepT heptapren 100.0 4.6E-34 1E-38 238.8 17.9 155 12-168 128-319 (319)
6 TIGR02749 prenyl_cyano solanes 100.0 7.8E-34 1.7E-38 237.6 18.5 155 12-168 132-322 (322)
7 CHL00151 preA prenyl transfera 100.0 1.5E-33 3.3E-38 236.0 18.4 154 13-168 134-323 (323)
8 PLN02857 octaprenyl-diphosphat 100.0 3.1E-33 6.7E-38 240.2 18.2 155 12-168 226-416 (416)
9 cd00685 Trans_IPPS_HT Trans-Is 100.0 2.3E-31 5.1E-36 216.3 18.1 152 10-166 105-259 (259)
10 KOG0776 Geranylgeranyl pyropho 100.0 1.4E-29 3.1E-34 212.8 15.4 152 13-166 196-384 (384)
11 PF00348 polyprenyl_synt: Poly 100.0 3.9E-28 8.4E-33 197.6 14.4 134 9-144 102-236 (260)
12 cd00867 Trans_IPPS Trans-Isopr 99.9 1.3E-25 2.7E-30 179.2 16.5 148 12-166 84-236 (236)
13 KOG0777 Geranylgeranyl pyropho 99.8 7.5E-19 1.6E-23 139.1 10.6 143 13-163 121-302 (322)
14 KOG0711 Polyprenyl synthetase 99.5 1.3E-14 2.9E-19 119.4 7.9 114 12-128 149-268 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.5 2.5E-12 5.4E-17 99.9 17.9 128 13-150 79-225 (243)
16 PLN02632 phytoene synthase 97.5 0.0021 4.6E-08 54.4 12.2 114 25-152 143-280 (334)
17 cd00683 Trans_IPPS_HH Trans-Is 97.5 0.002 4.4E-08 52.4 11.2 110 25-151 96-227 (265)
18 TIGR03465 HpnD squalene syntha 97.4 0.0049 1.1E-07 50.3 13.0 108 25-150 88-217 (266)
19 TIGR03464 HpnC squalene syntha 97.3 0.0091 2E-07 48.8 13.2 109 25-151 89-219 (266)
20 PF00494 SQS_PSY: Squalene/phy 96.9 0.035 7.7E-07 44.9 12.6 111 25-151 94-228 (267)
21 TIGR01559 squal_synth farnesyl 96.8 0.09 1.9E-06 44.7 15.0 116 25-151 111-249 (336)
22 PF03936 Terpene_synth_C: Terp 93.9 0.45 9.7E-06 38.0 8.5 118 14-145 138-269 (270)
23 COG1562 ERG9 Phytoene/squalene 93.8 2.8 6E-05 34.9 13.1 110 25-151 106-237 (288)
24 cd00687 Terpene_cyclase_nonpla 93.6 3.5 7.5E-05 33.8 15.0 106 25-143 139-259 (303)
25 cd00868 Terpene_cyclase_C1 Ter 91.1 6.8 0.00015 31.4 13.8 116 18-147 127-256 (284)
26 TIGR02748 GerC3_HepT heptapren 89.7 5.3 0.00011 33.5 10.4 86 54-150 41-127 (319)
27 PRK10888 octaprenyl diphosphat 89.4 4.6 0.0001 34.0 9.8 86 53-149 41-127 (323)
28 cd00684 Terpene_cyclase_plant_ 88.6 9.6 0.00021 34.4 11.8 112 25-148 366-491 (542)
29 PRK12872 ubiA prenyltransferas 88.4 3.1 6.6E-05 34.0 7.9 42 86-137 172-213 (285)
30 cd00685 Trans_IPPS_HT Trans-Is 87.4 8.8 0.00019 30.9 10.0 68 71-149 34-102 (259)
31 PRK13105 ubiA prenyltransferas 85.6 6.3 0.00014 32.7 8.3 42 87-138 172-213 (282)
32 PF00348 polyprenyl_synt: Poly 85.2 5.1 0.00011 32.4 7.6 73 66-149 24-96 (260)
33 PRK12884 ubiA prenyltransferas 84.7 5.3 0.00011 32.5 7.5 66 59-134 139-204 (279)
34 PF06783 UPF0239: Uncharacteri 82.9 1.8 3.9E-05 29.5 3.3 22 74-95 15-36 (85)
35 PRK13591 ubiA prenyltransferas 82.1 3.6 7.9E-05 34.6 5.5 39 89-137 193-231 (307)
36 TIGR02749 prenyl_cyano solanes 81.2 20 0.00044 30.1 9.8 62 77-149 69-130 (322)
37 PLN00012 chlorophyll synthetas 78.7 7.2 0.00016 33.7 6.4 40 86-135 263-302 (375)
38 PRK10581 geranyltranstransfera 77.1 35 0.00076 28.4 9.9 84 54-148 42-128 (299)
39 PRK12882 ubiA prenyltransferas 77.1 19 0.00042 29.3 8.3 41 87-137 169-209 (276)
40 COG0142 IspA Geranylgeranyl py 75.3 7.8 0.00017 32.6 5.6 57 83-150 74-130 (322)
41 PF01040 UbiA: UbiA prenyltran 75.1 15 0.00032 28.9 7.0 62 61-132 131-193 (257)
42 CHL00151 preA prenyl transfera 73.4 28 0.00061 29.2 8.5 59 79-148 72-130 (323)
43 PRK09573 (S)-2,3-di-O-geranylg 73.3 29 0.00063 28.3 8.4 36 90-135 169-204 (279)
44 PRK12883 ubiA prenyltransferas 70.5 31 0.00067 28.1 8.0 39 89-137 168-206 (277)
45 PRK13595 ubiA prenyltransferas 67.7 29 0.00062 29.0 7.2 79 58-148 154-232 (292)
46 cd00867 Trans_IPPS Trans-Isopr 66.8 59 0.0013 25.3 10.2 38 63-100 6-43 (236)
47 TIGR02056 ChlG chlorophyll syn 65.8 34 0.00074 28.5 7.4 39 87-135 195-233 (306)
48 TIGR01476 chlor_syn_BchG bacte 64.4 4.5 9.8E-05 33.1 1.9 36 91-136 177-212 (283)
49 PRK12871 ubiA prenyltransferas 64.4 29 0.00062 28.9 6.6 37 87-133 187-223 (297)
50 PRK12887 ubiA tocopherol phyty 63.7 15 0.00032 30.8 4.8 40 86-135 193-232 (308)
51 PF10776 DUF2600: Protein of u 60.4 75 0.0016 27.1 8.4 98 42-151 177-277 (330)
52 TIGR01475 ubiA_other putative 59.9 58 0.0013 26.6 7.7 37 90-136 173-209 (282)
53 COG0382 UbiA 4-hydroxybenzoate 59.6 48 0.001 27.1 7.2 73 56-138 147-220 (289)
54 PLN02279 ent-kaur-16-ene synth 58.6 52 0.0011 31.4 7.9 111 26-148 601-725 (784)
55 PLN02878 homogentisate phytylt 58.0 21 0.00045 29.7 4.7 48 83-140 164-211 (280)
56 PRK12875 ubiA prenyltransferas 57.6 12 0.00026 31.0 3.2 38 86-133 176-213 (282)
57 PLN02890 geranyl diphosphate s 56.9 87 0.0019 27.6 8.6 60 79-149 165-224 (422)
58 PLN02857 octaprenyl-diphosphat 53.2 57 0.0012 28.6 6.8 57 77-144 163-219 (416)
59 PRK07566 bacteriochlorophyll/c 50.9 11 0.00023 31.6 2.0 35 90-134 204-238 (314)
60 PRK12392 bacteriochlorophyll c 49.6 42 0.00091 28.4 5.3 45 83-137 188-232 (331)
61 PRK06080 1,4-dihydroxy-2-napht 47.7 65 0.0014 26.3 6.1 37 89-135 182-218 (293)
62 TIGR01474 ubiA_proteo 4-hydrox 45.8 1.3E+02 0.0029 24.5 7.7 34 89-132 174-207 (281)
63 PF12029 DUF3516: Domain of un 44.7 1.1E+02 0.0023 27.4 7.0 83 83-165 216-304 (461)
64 PRK13592 ubiA prenyltransferas 36.7 67 0.0014 27.0 4.5 45 80-136 180-224 (299)
65 PRK04375 protoheme IX farnesyl 36.3 1.3E+02 0.0028 24.8 6.2 78 42-122 8-91 (296)
66 PRK13106 ubiA prenyltransferas 36.1 2.3E+02 0.005 23.6 7.7 36 89-135 191-226 (300)
67 PRK12878 ubiA 4-hydroxybenzoat 35.5 1.4E+02 0.0031 24.9 6.4 82 42-123 28-120 (314)
68 PRK13387 1,4-dihydroxy-2-napht 34.5 15 0.00032 30.9 0.3 32 92-133 206-237 (317)
69 PF10047 DUF2281: Protein of u 32.7 38 0.00083 21.6 2.0 29 139-167 3-31 (66)
70 PRK13362 protoheme IX farnesyl 29.4 1.8E+02 0.0039 24.3 6.0 77 44-123 13-95 (306)
71 TIGR02235 menA_cyano-plnt 1,4- 29.1 39 0.00084 28.0 1.9 23 111-133 187-209 (285)
72 PRK06080 1,4-dihydroxy-2-napht 28.7 3.2E+02 0.0069 22.2 8.9 82 43-124 2-89 (293)
73 PRK12869 ubiA protoheme IX far 28.0 3.3E+02 0.0072 22.1 8.5 78 45-122 3-83 (279)
74 PHA02603 nrdC.11 hypothetical 27.8 2.4E+02 0.0052 24.1 6.5 54 110-165 267-322 (330)
75 TIGR01473 cyoE_ctaB protoheme 27.7 1.7E+02 0.0038 23.7 5.6 77 46-123 2-83 (280)
76 COG1575 MenA 1,4-dihydroxy-2-n 27.7 41 0.00088 28.4 1.8 27 107-133 198-224 (303)
77 TIGR00751 menA 1,4-dihydroxy-2 27.6 46 0.00099 27.5 2.1 26 111-136 190-215 (284)
78 PRK12870 ubiA 4-hydroxybenzoat 25.8 3.8E+02 0.0082 22.0 7.6 38 88-135 179-216 (290)
79 PRK07419 1,4-dihydroxy-2-napht 25.6 46 0.001 27.8 1.8 24 110-133 199-222 (304)
80 PRK13387 1,4-dihydroxy-2-napht 25.1 2.2E+02 0.0049 23.8 5.8 60 43-102 2-66 (317)
81 COG2096 cob(I)alamin adenosylt 23.5 2.7E+02 0.006 21.7 5.6 15 89-103 60-74 (184)
82 PHA02130 hypothetical protein 23.4 99 0.0021 20.1 2.6 28 95-122 32-62 (81)
83 PLN02922 prenyltransferase 23.1 50 0.0011 27.8 1.6 27 110-136 213-239 (315)
84 TIGR01473 cyoE_ctaB protoheme 22.5 1.6E+02 0.0035 23.9 4.4 22 113-134 186-207 (280)
85 PRK12871 ubiA prenyltransferas 21.4 4.7E+02 0.01 21.6 7.1 77 43-122 4-97 (297)
86 PRK12888 ubiA prenyltransferas 21.3 4.7E+02 0.01 21.5 7.1 22 111-132 185-206 (284)
87 KOG0777 Geranylgeranyl pyropho 20.8 2.8E+02 0.0061 22.9 5.3 93 46-150 26-119 (322)
88 PTZ00465 rhoptry-associated pr 20.2 3.3E+02 0.0072 24.8 6.0 82 54-143 17-102 (565)
No 1
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=6.5e-37 Score=253.85 Aligned_cols=163 Identities=32% Similarity=0.611 Sum_probs=150.2
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 042175 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNE-EEIERMRNYG 84 (170)
Q Consensus 6 ~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~-~~~~~l~~~g 84 (170)
.++.++.++++.++++.|..+|+.||.+|+.+....+++++|.+|+..|||+||++||++|++++|.++ +..+.+++||
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~GQ~ld~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g 212 (299)
T PRK10581 133 VSDRDRISMISELASASGIAGMCGGQALDLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYA 212 (299)
T ss_pred CChHHHHHHHHHHHHhcccchhhHhhHHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 355667889999999877799999999999987666899999999999999999999999999999864 5789999999
Q ss_pred HHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C-hHHHHHHHH
Q 042175 85 KCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPA-K-AAPLDHLVN 161 (170)
Q Consensus 85 ~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~-~-~~~L~~l~~ 161 (170)
+++|+||||+||++|+++++ .+||+.++|+++||+|||+++|++++++.+++|.++|++.|+.+|+. . ++.|.+|++
T Consensus 213 ~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~ 292 (299)
T PRK10581 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAAQSLDTSALEALAN 292 (299)
T ss_pred HHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHH
Confidence 99999999999999999998 99999999999999999999999999999999999999999999753 3 578999999
Q ss_pred HHHhccc
Q 042175 162 FMVSFDN 168 (170)
Q Consensus 162 ~~~~r~~ 168 (170)
|+.+|.+
T Consensus 293 ~~~~R~~ 299 (299)
T PRK10581 293 YIIQRDK 299 (299)
T ss_pred HHHhccC
Confidence 9999964
No 2
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=6.4e-35 Score=250.70 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 042175 11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGM 89 (170)
Q Consensus 11 ~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~ 89 (170)
..++++.+++++ ..|++||++|+.+..+ .+++++|.+++..|||+||++||++|++++|++++..+.+++||++||+
T Consensus 225 ~~~~~~~~s~a~--~~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGl 302 (422)
T PLN02890 225 NTEVVSLLATAV--EHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGL 302 (422)
T ss_pred cHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence 356788999999 9999999999988754 4899999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH---------------------------------HHHHHHHHHH
Q 042175 90 AYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV---------------------------------GIDESKNYAK 135 (170)
Q Consensus 90 afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~---------------------------------~~e~a~~~~~ 135 (170)
||||+||++||++++ ..||+.++|+++||+|+|+++ |+++|++.++
T Consensus 303 AFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~ 382 (422)
T PLN02890 303 AFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAR 382 (422)
T ss_pred HHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999999999 999999999999999999987 5688999999
Q ss_pred HHHHHHHHHhhcCCCCC-------hHHHHHHHHHHHhccc
Q 042175 136 ELLAKAKQELAYFDPAK-------AAPLDHLVNFMVSFDN 168 (170)
Q Consensus 136 ~~~~~a~~~L~~l~~~~-------~~~L~~l~~~~~~r~~ 168 (170)
+|.++|.++|+.||++. ++.|..|++++.+|.+
T Consensus 383 ~~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 383 EHANLAAAAIESLPETDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred HHHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHhccC
Confidence 99999999999998754 6889999999999974
No 3
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=6.9e-35 Score=243.99 Aligned_cols=156 Identities=33% Similarity=0.555 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 11 ~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
..++++.++.++ .+|++||.+|+.+.++.+|+++|.+|++.|||+||+++|++|+++++++++..+.+.+||.++|+|
T Consensus 132 ~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGla 209 (322)
T COG0142 132 ALEAIKALAEAI--NGLCGGQALDLAFENKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLA 209 (322)
T ss_pred hHHHHHHHHHHH--HHHHHhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHH
Confidence 477888888888 999999999999988779999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHH---------------------------------HHHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGID---------------------------------ESKNYAKE 136 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e---------------------------------~a~~~~~~ 136 (170)
|||+||++|+.+++ ..||+.++|+.+||+|||++++++ ++.++++.
T Consensus 210 FQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~ 289 (322)
T COG0142 210 FQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKT 289 (322)
T ss_pred HHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHH
Confidence 99999999999999 999999999999999999999876 45557999
Q ss_pred HHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 137 LLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 137 ~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
|.++|++.|+.+|+. .++.|.++++++.+|.+
T Consensus 290 ~~~~a~~~L~~l~~~~~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 290 YVEKAKEALEKLPDSEAKEALLELADFIIKRKY 322 (322)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHhccC
Confidence 999999999999843 57899999999999963
No 4
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=2.9e-34 Score=240.30 Aligned_cols=155 Identities=23% Similarity=0.359 Sum_probs=142.2
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCCC-CCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKD-VSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~-~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.+++..+++++ ..+++||++|+.+..+. +++++|.+++..|||+||++||++|++++|++++..+.+++||+++|+|
T Consensus 129 ~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 206 (323)
T PRK10888 129 LKVLEVMSEAV--NVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTA 206 (323)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46778889998 89999999999876543 8999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH-------------------------------------HHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV-------------------------------------GIDESKN 132 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~-------------------------------------~~e~a~~ 132 (170)
|||+||++|+++++ ..||+.++|+++||+|+|+++ +++++++
T Consensus 207 FQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~ 286 (323)
T PRK10888 207 FQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQ 286 (323)
T ss_pred HHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHH
Confidence 99999999999999 999999999999999999986 3567888
Q ss_pred HHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 133 YAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 133 ~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
.+++|.++|++.|+.||++ .++.|..+++++.+|.+
T Consensus 287 ~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 323 (323)
T PRK10888 287 RAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR 323 (323)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCcC
Confidence 9999999999999999875 36899999999999964
No 5
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=4.6e-34 Score=238.77 Aligned_cols=155 Identities=27% Similarity=0.405 Sum_probs=142.3
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++++ ..+++||++|+.+..+ .+++++|.+++..|||+||++||.+|++++|++++..+.+++||+++|+|
T Consensus 128 ~~~~~~~~~~~--~~~~~Gq~~~~~~~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~a 205 (319)
T TIGR02748 128 PRAHQILSHTI--VEVCRGEIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMS 205 (319)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 36778889998 9999999999987644 37899999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH----------------------------------HHHHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG----------------------------------IDESKNYAK 135 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~----------------------------------~e~a~~~~~ 135 (170)
|||+||++|+++++ ..|||.++|+++||+|+|++++ +++|+++++
T Consensus 206 FQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~a~ 285 (319)
T TIGR02748 206 YQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVLEETTAEEMEPLIEEVKKSDAIEYAYAVSD 285 (319)
T ss_pred HHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcCcchhHHHHHHHcCCCHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999998 8999999999999999999974 467999999
Q ss_pred HHHHHHHHHhhcCCCCC-hHHHHHHHHHHHhccc
Q 042175 136 ELLAKAKQELAYFDPAK-AAPLDHLVNFMVSFDN 168 (170)
Q Consensus 136 ~~~~~a~~~L~~l~~~~-~~~L~~l~~~~~~r~~ 168 (170)
+|.++|.+.|+.||++. ++.|..+++++.+|.+
T Consensus 286 ~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 319 (319)
T TIGR02748 286 RYLKKALELLDGLPDGRAKKPLQEIAKYIGKRKY 319 (319)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999998753 6889999999999964
No 6
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=7.8e-34 Score=237.64 Aligned_cols=155 Identities=28% Similarity=0.414 Sum_probs=142.8
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.+++..+++++ ..+++||++|+.+... .+++++|.+++..|||+||++||++|++++|++++.++.+.+||.++|+|
T Consensus 132 ~~~~~~~~~~~--~~~~~Gq~~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~a 209 (322)
T TIGR02749 132 LEVVKLISKVI--TDFAEGEIKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLA 209 (322)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence 46788889998 8999999999977644 48999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH---------------------------------HHHHHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG---------------------------------IDESKNYAKE 136 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~---------------------------------~e~a~~~~~~ 136 (170)
|||+||++|+++++ ..||+.++|+++||+|+|++++ ++++++.+++
T Consensus 210 FQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~ 289 (322)
T TIGR02749 210 FQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKE 289 (322)
T ss_pred HHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 99999999999998 9999999999999999999874 5789999999
Q ss_pred HHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 137 LLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 137 ~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
|.++|++.|+.||++ .++.|.+|++++.+|.+
T Consensus 290 ~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 322 (322)
T TIGR02749 290 QAQLALQSLSFLPPSPPREALKELVHFVLSRLY 322 (322)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999875 36889999999999964
No 7
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=236.01 Aligned_cols=154 Identities=24% Similarity=0.372 Sum_probs=141.5
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAY 91 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~af 91 (170)
++++.+++++ ..+++||.+|..+..+ .+++++|.+++.+|||+||++||++|++++|++++..+.+++||.++|+||
T Consensus 134 ~~~~~~~~~~--~~l~~G~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aF 211 (323)
T CHL00151 134 EVVKLISKVI--TDFAEGEIRQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAF 211 (323)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4667788888 8899999999877543 378999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH---------------------------------HHHHHHHHHHH
Q 042175 92 QLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG---------------------------------IDESKNYAKEL 137 (170)
Q Consensus 92 Qi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~---------------------------------~e~a~~~~~~~ 137 (170)
||+||++|+++++ ..||+.++|+++||+|||++++ +++|++.+++|
T Consensus 212 Qi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~ 291 (323)
T CHL00151 212 QIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEH 291 (323)
T ss_pred HHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 9999999999998 9999999999999999999986 68899999999
Q ss_pred HHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 138 LAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 138 ~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
.++|++.|+.||++ .++.|..+++++.+|.+
T Consensus 292 ~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 323 (323)
T CHL00151 292 MQAAIQCLKFLPPSSAKDSLIEIANFIINRLN 323 (323)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999864 46889999999999863
No 8
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=3.1e-33 Score=240.20 Aligned_cols=155 Identities=30% Similarity=0.418 Sum_probs=143.0
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++++ ..+++||+.|+.+... .+++++|.+++.+|||+||++||++|++++|++++..+.+.+||++||+|
T Consensus 226 ~~~~~~~s~~~--~~l~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiA 303 (416)
T PLN02857 226 LEVIKLISQVI--KDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLA 303 (416)
T ss_pred HHHHHHHHHHH--HHHHhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46778888888 8899999999877643 48899999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH---------------------------------HHHHHHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV---------------------------------GIDESKNYAKE 136 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~---------------------------------~~e~a~~~~~~ 136 (170)
|||+||++|+++++ ..||+.++|+.+||+|+|+++ |+++|++++++
T Consensus 304 FQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~ 383 (416)
T PLN02857 304 FQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKE 383 (416)
T ss_pred HHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999998 999999999999999999987 67899999999
Q ss_pred HHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 137 LLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 137 ~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
|.++|++.|+.||++ .++.|..+++|+.+|.+
T Consensus 384 ~~~~A~~~L~~Lp~~~~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 384 KADLAIQNLECLPRGAFRSSLEDMVDYNLERIY 416 (416)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC
Confidence 999999999999875 35789999999999963
No 9
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=99.98 E-value=2.3e-31 Score=216.32 Aligned_cols=152 Identities=32% Similarity=0.514 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 042175 10 RLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVG 88 (170)
Q Consensus 10 ~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG 88 (170)
...++++.+++++ ..++.||++|+.+... .+++++|.+++.+|||+||.++|.+|+++++++++..+.+++||.++|
T Consensus 105 ~~~~~~~~~~~~~--~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG 182 (259)
T cd00685 105 YYPRALELFSEAI--LELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLG 182 (259)
T ss_pred cHHHHHHHHHHHH--HHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678999999998 9999999999998765 489999999999999999999999999999999999999999999999
Q ss_pred HHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHhc
Q 042175 89 MAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAK-AAPLDHLVNFMVSF 166 (170)
Q Consensus 89 ~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~-~~~L~~l~~~~~~r 166 (170)
++|||+||++|+++++ ..||+.++|+++||+|||+++++ ++.++.|.++|+..|+.+|+.. +..|.++++++.+|
T Consensus 183 ~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l---~~~~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~r 259 (259)
T cd00685 183 LAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL---RELAREYEEKALEALKALPESPAREALRALADFILER 259 (259)
T ss_pred HHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH---HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcC
Confidence 9999999999999998 89999999999999999999999 8999999999999999998643 57899999999876
No 10
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=212.84 Aligned_cols=152 Identities=34% Similarity=0.497 Sum_probs=130.3
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCC-----CCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEG-----KDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCV 87 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~-----~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~l 87 (170)
.+++.+++++ .++++|++.+..... ++..+++|++++.+|||+|++.+|++|++++|.++++++.+++||+++
T Consensus 196 ~v~elm~~aI--~dLv~ge~~~~~~~~~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~l 273 (384)
T KOG0776|consen 196 VVVELMASAI--ADLVRGEFTQGLVAGEGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCL 273 (384)
T ss_pred hHHHHHHHHH--HHHHHhhhhcccccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3444455555 555555555444331 125689999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH------------------------------HHHHHHHHHHH
Q 042175 88 GMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV------------------------------GIDESKNYAKE 136 (170)
Q Consensus 88 G~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~------------------------------~~e~a~~~~~~ 136 (170)
|++||+.||++||.... +.||+.+.|+..|+.|+|+++ |+..++.++++
T Consensus 274 GL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~~v~~a~~la~~ 353 (384)
T KOG0776|consen 274 GLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVPGVALAKYLARR 353 (384)
T ss_pred HHHHHHhhcccCcccchhhcCcchhhhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 999999999999999999998 46778999999
Q ss_pred HHHHHHHHhhcCCCC-ChHHHHHHHHHHHhc
Q 042175 137 LLAKAKQELAYFDPA-KAAPLDHLVNFMVSF 166 (170)
Q Consensus 137 ~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r 166 (170)
|.++|.+.|+.||+. .++.|.+++.++..|
T Consensus 354 ~~~~Al~~l~~~p~s~ar~aL~~l~~~~~~r 384 (384)
T KOG0776|consen 354 HNNKALEALQSLPRSEARSALENLVLAVLTR 384 (384)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhcC
Confidence 999999999999875 468999999998876
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=99.96 E-value=3.9e-28 Score=197.61 Aligned_cols=134 Identities=31% Similarity=0.525 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 042175 9 DRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVG 88 (170)
Q Consensus 9 ~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG 88 (170)
.....++..+.... .....||..|+.+....+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|
T Consensus 102 ~~~~~i~~~~~~~~--~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG 179 (260)
T PF00348_consen 102 ERVLRILELFIEAL--IEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGAILAGADEEQIEALREFGRHLG 179 (260)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--ccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 44566666666665 5556779999998866789999999999999999999999999999999999999999999999
Q ss_pred HHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 042175 89 MAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQE 144 (170)
Q Consensus 89 ~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~ 144 (170)
+||||+||++|+++++ ..||+.++|+++||+|||++++++.+.+..+.+...+.+.
T Consensus 180 ~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~~~~~ 236 (260)
T PF00348_consen 180 IAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQEAYGK 236 (260)
T ss_dssp HHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHHHHcc
Confidence 9999999999999988 8999999999999999999999999888877777665543
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=99.94 E-value=1.3e-25 Score=179.19 Aligned_cols=148 Identities=28% Similarity=0.452 Sum_probs=126.8
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++.+ ..+++||.+|+.+..+ ..++++|.+++.+|||++|+.+|..++++++.+++..+.+..||.++|+|
T Consensus 84 ~~~~~~~~~~~--~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~a 161 (236)
T cd00867 84 PRALELFAEAL--RELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGRALGLA 161 (236)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence 34677888888 9999999999988753 48999999999999999999999999999999998999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHHHhc
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPA---KAAPLDHLVNFMVSF 166 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~---~~~~L~~l~~~~~~r 166 (170)
|||.||++|+.++. ..|| .++|+.+||+|+|.+++ .+.+.++.+++.+.+..+++. ....+..++.++.+|
T Consensus 162 ~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 236 (236)
T cd00867 162 FQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA----RERAAEYAEEAYAALEALPPSLPRARRALIALADFLYRR 236 (236)
T ss_pred HHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhC
Confidence 99999999999999 9999 99999999999999998 455555566666666665432 356778888887665
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=99.79 E-value=7.5e-19 Score=139.14 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=122.9
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCCC--CCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGKD--VSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~--~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++.++.+.. ..++.||.+|+.|.+.- ++++.|..|+..|||-||+++.++.-.++...+ .+..+---+|+.
T Consensus 121 ~a~kifteqL--leLHrGQGldIYWRD~~tcPtee~Yk~Mv~~KTGGLF~La~rLMqlfS~~ke----dl~pl~n~LGl~ 194 (322)
T KOG0777|consen 121 NAIKIFTEQL--LELHRGQGLDIYWRDFLTCPTEEMYKNMVMNKTGGLFRLALRLMQLFSHHKE----DLVPLINLLGLI 194 (322)
T ss_pred hHHHHHHHHH--HHHhcCCCcceeeeccCcCCCHHHHHHHHHHhcccHHHHHHHHHHHHHhcch----hHHHHHHHHhHh
Confidence 5778888888 99999999999998653 899999999999999999999999999997654 477788889999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH------------------------------------HHHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV------------------------------------GIDESKNY 133 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~------------------------------------~~e~a~~~ 133 (170)
|||+||++++...+ ...|..+.|+.+||.++|+++ +++|+++.
T Consensus 195 fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q~~Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~ 274 (322)
T KOG0777|consen 195 FQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQTEQVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNF 274 (322)
T ss_pred hhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCchHHHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHH
Confidence 99999999998777 778999999999999999887 46889999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 042175 134 AKELLAKAKQELAYFDPAKAAPLDHLVNFM 163 (170)
Q Consensus 134 ~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~ 163 (170)
++++..+|++.++..++ +..|-+|+..+
T Consensus 275 l~~L~a~a~~~i~~~g~--Npyl~~L~~hl 302 (322)
T KOG0777|consen 275 LNQLVAEARSMIKNDGE--NPYLPDLASHL 302 (322)
T ss_pred HHHHHHHHHHHHHhcCC--CcchHHHHHHH
Confidence 99999999999998754 34444444443
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=99.55 E-value=1.3e-14 Score=119.37 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCCC---CCHHHHHHHHHccHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKD---VSLSELNFIHRHKSEKF-VEASIVSGVIIGG-GNEEEIERMRNYGKC 86 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~---~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag-~~~~~~~~l~~~g~~ 86 (170)
..+++.+.... ...+-||.++-...+.. .|++.|..|+..|||.+ |-+|..+|..++| .+.+.......+...
T Consensus 149 ~~l~elf~ev~--f~T~lGdllt~~~~~~~ls~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~ 226 (347)
T KOG0711|consen 149 VDLVELFHEVT--FQTELGDLLTTPEGNKDLSKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLL 226 (347)
T ss_pred HHHHHHHHHHH--HHHhhhccccCcccchhHhhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHH
Confidence 34555555555 66777876665544433 67899999999999999 9999999999998 457778899999999
Q ss_pred HHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHH
Q 042175 87 VGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGID 128 (170)
Q Consensus 87 lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e 128 (170)
+|..||++||++|++|++ .+|| .|+||..+|+||.+..+++
T Consensus 227 lg~~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWlv~~al~ 268 (347)
T KOG0711|consen 227 LGEYFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWLVVKALQ 268 (347)
T ss_pred HHHHHhcchHHHHhcCChhhcCC-CCCccccCceeeehHHHHh
Confidence 999999999999999999 8887 6899999999999976543
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.51 E-value=2.5e-12 Score=99.92 Aligned_cols=128 Identities=30% Similarity=0.418 Sum_probs=106.8
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAY 91 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~af 91 (170)
.....+.+.. ..++.||..|+.+... .++.++|..+.+.|||.++...+..++..++.+....+.+..++.++|+++
T Consensus 79 ~~~~~~~~~~--~~~~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 156 (243)
T cd00385 79 EALEILAEAL--LDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAF 156 (243)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3466677777 8899999999998753 489999999999999999999999999998887777899999999999999
Q ss_pred hHHhhhhhccCCCCCCCccchHhhhCCCchHHHH------------------HHHHHHHHHHHHHHHHHHHhhcCCC
Q 042175 92 QLWNDIVDVIGSPETKETTGRDMLRGKATYPKLV------------------GIDESKNYAKELLAKAKQELAYFDP 150 (170)
Q Consensus 92 Qi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~------------------~~e~a~~~~~~~~~~a~~~L~~l~~ 150 (170)
|+.||+.|+..+...+ +|++|+|.++ +++.+.+.+..+.+++.+.+.++..
T Consensus 157 ql~nDl~~~~~e~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (243)
T cd00385 157 QLTNDLLDYEGDAERG--------EGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELIL 225 (243)
T ss_pred HHHHHHHhccCCHHHh--------CCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999997754110 4788999876 3567788888888888888887754
No 16
>PLN02632 phytoene synthase
Probab=97.52 E-value=0.0021 Score=54.41 Aligned_cols=114 Identities=24% Similarity=0.274 Sum_probs=81.8
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHhHHhhhhhccC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGN--EEEIERMRNYGKCVGMAYQLWNDIVDVIG 102 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~--~~~~~~l~~~g~~lG~afQi~DDilD~~~ 102 (170)
..|+.|..+|+... ...|.+++......-.|++..+++.+ ++..+ ....+.+...+.++|+|+|+.|=+.|+
T Consensus 143 ~~li~g~~~Dl~~~-~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRDv-- 216 (334)
T PLN02632 143 RDMIEGMRMDLVKS-RYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRDV-- 216 (334)
T ss_pred HHHHHHHHHHhccC-CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 67889999999753 24688888888777777777776655 33222 222356788999999999999988887
Q ss_pred CCCCCCccchHhhhCCCchHHHH----------------------HHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 042175 103 SPETKETTGRDMLRGKATYPKLV----------------------GIDESKNYAKELLAKAKQELAYFDPAK 152 (170)
Q Consensus 103 ~~~~gk~~~~D~~~gk~t~~~l~----------------------~~e~a~~~~~~~~~~a~~~L~~l~~~~ 152 (170)
+.|...|++-+|.-. .+..-...++.|++.|...+..+|+..
T Consensus 217 --------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~ 280 (334)
T PLN02632 217 --------GEDARRGRVYLPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPAS 280 (334)
T ss_pred --------HHHHhCCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHh
Confidence 456666776666421 233444678999999999999998643
No 17
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=97.47 E-value=0.002 Score=52.42 Aligned_cols=110 Identities=24% Similarity=0.247 Sum_probs=80.7
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~ 104 (170)
..|++|..+|+... ...|.++++..+..-.|++..+++.+ ++.... +....++.++|.|+|+.|=+.|+
T Consensus 96 ~~li~g~~~Dl~~~-~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv---- 164 (265)
T cd00683 96 RDLLAGMAMDLDKR-RYETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDV---- 164 (265)
T ss_pred HHHHHHHHHhCCCC-CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHH----
Confidence 77899999999853 24688888888878777777766544 332112 34678999999999999988887
Q ss_pred CCCCccchHhhhCCCchHHHH----------------------HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042175 105 ETKETTGRDMLRGKATYPKLV----------------------GIDESKNYAKELLAKAKQELAYFDPA 151 (170)
Q Consensus 105 ~~gk~~~~D~~~gk~t~~~l~----------------------~~e~a~~~~~~~~~~a~~~L~~l~~~ 151 (170)
..|...|++.+|.=. .+......++.|+..|...+..+|+.
T Consensus 165 ------~eD~~~gR~YlP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 227 (265)
T cd00683 165 ------GEDARRGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRR 227 (265)
T ss_pred ------HHHHccCCCcCCHHHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHh
Confidence 345566666666421 35566677899999999999999863
No 18
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=97.44 E-value=0.0049 Score=50.29 Aligned_cols=108 Identities=24% Similarity=0.249 Sum_probs=80.3
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~ 104 (170)
..|++|...|+... ...|.++++..+..-.|++..+++.+ ++..+ +....++.++|.|+|+.|=+.|+
T Consensus 88 ~~li~g~~~Dl~~~-~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~----~~~~~~a~~lG~AlqltnilRdv---- 155 (266)
T TIGR03465 88 LEVIDGMEMDLEQT-RYPDFAELDLYCDRVAGAVGRLSARI---FGATD----ARTLEYAHHLGRALQLTNILRDV---- 155 (266)
T ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCC----hhHHHHHHHHHHHHHHHHHHHHh----
Confidence 67899999999754 24788899888887778887777765 33333 23578899999999999988887
Q ss_pred CCCCccchHhhhCCCchHHHH----------------------HHHHHHHHHHHHHHHHHHHhhcCCC
Q 042175 105 ETKETTGRDMLRGKATYPKLV----------------------GIDESKNYAKELLAKAKQELAYFDP 150 (170)
Q Consensus 105 ~~gk~~~~D~~~gk~t~~~l~----------------------~~e~a~~~~~~~~~~a~~~L~~l~~ 150 (170)
..|...|++-+|.-. .+..--..++.|++.|...+..+|+
T Consensus 156 ------~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~ 217 (266)
T TIGR03465 156 ------GEDARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDR 217 (266)
T ss_pred ------HHHHhCCCeecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCH
Confidence 346666777666421 2445566788999999999999986
No 19
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=97.32 E-value=0.0091 Score=48.79 Aligned_cols=109 Identities=19% Similarity=0.121 Sum_probs=77.3
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~ 104 (170)
..+++|..+|+.... ..|.++++..+..-.|++..+++.+ ++..+.+ ...++.++|.|+|+.|=+.|+
T Consensus 89 ~~li~~~~~Dl~~~~-~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl---- 156 (266)
T TIGR03464 89 LDLLDAFRQDVVVTR-YATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV---- 156 (266)
T ss_pred HHHHHHHHHhccCCC-CCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh----
Confidence 567888888886542 3688888888777777777776653 3333332 347899999999999988886
Q ss_pred CCCCccchHhhhCCCchHHHH----------------------HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042175 105 ETKETTGRDMLRGKATYPKLV----------------------GIDESKNYAKELLAKAKQELAYFDPA 151 (170)
Q Consensus 105 ~~gk~~~~D~~~gk~t~~~l~----------------------~~e~a~~~~~~~~~~a~~~L~~l~~~ 151 (170)
+.|...|++-+|.=. .++.-...++.|+..|...+..+|..
T Consensus 157 ------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 219 (266)
T TIGR03464 157 ------GVDYRKGRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDGR 219 (266)
T ss_pred ------HHHHhcCCccCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHh
Confidence 345556666666321 24455667789999999999999864
No 20
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=96.87 E-value=0.035 Score=44.90 Aligned_cols=111 Identities=22% Similarity=0.170 Sum_probs=77.3
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~ 104 (170)
..|+.|...|+.... ..|.+++...+..-+|++..+.+.+...- .+. .....++.++|.|+|+.|=+.|+
T Consensus 94 ~~li~~~~~dl~~~~-~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~---- 163 (267)
T PF00494_consen 94 LELIDGMEMDLEFTP-YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDI---- 163 (267)
T ss_dssp HHHHHHHHHCTT-S---SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTH----
T ss_pred HHHHHHhcccccCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHh----
Confidence 678999999987642 36899999988888898888776654432 222 46888999999999999988886
Q ss_pred CCCCccchH-hhhCCCchHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042175 105 ETKETTGRD-MLRGKATYPKLV-----------------------GIDESKNYAKELLAKAKQELAYFDPA 151 (170)
Q Consensus 105 ~~gk~~~~D-~~~gk~t~~~l~-----------------------~~e~a~~~~~~~~~~a~~~L~~l~~~ 151 (170)
..| ...|++-+|.=. .+...-..++.|.+.|...+..+|++
T Consensus 164 ------~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~ 228 (267)
T PF00494_consen 164 ------PEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPP 228 (267)
T ss_dssp ------HHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--T
T ss_pred ------HHHHHhcccccCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 456 566666666421 23455667888999999999999543
No 21
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.82 E-value=0.09 Score=44.69 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=77.1
Q ss_pred hhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCC
Q 042175 25 EGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGS 103 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~ 103 (170)
..|+.|..+|+....- ..|.++|..-..+=-|..-.+.+.+-+. +|...+.......++.++|+|.|+.|=+.|+
T Consensus 111 ~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQlTNIlRDv--- 186 (336)
T TIGR01559 111 RRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQKTNIIRDY--- 186 (336)
T ss_pred HHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHHHHHHHHHH---
Confidence 4567999888865421 1688888777666666655555555433 2322222223468999999999999988887
Q ss_pred CCCCCccchHhhhCCCchHHH----------------------HHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042175 104 PETKETTGRDMLRGKATYPKL----------------------VGIDESKNYAKELLAKAKQELAYFDPA 151 (170)
Q Consensus 104 ~~~gk~~~~D~~~gk~t~~~l----------------------~~~e~a~~~~~~~~~~a~~~L~~l~~~ 151 (170)
+.|..+|++=||.= -.++.-...+..|++.|...+..+++.
T Consensus 187 -------~ED~~~GR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~al~yl~~l~~~ 249 (336)
T TIGR01559 187 -------LEDINEGRMFWPREIWSKYAKKLGDFKKPENSDKALQCLNELVTNALHHATDCLTYLSRLRDQ 249 (336)
T ss_pred -------HhHHhCCCCCCCHHHHHHcCCCHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34556666666642 134556667888899999999988653
No 22
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=93.93 E-value=0.45 Score=38.02 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=65.9
Q ss_pred HHHHHHHhhchhhhhhhhHHhhhcCC--CCCCHHHHHHHHHccHHHH-HHHHHHHHHHhcCC-CH---HHHHHHHHHHHH
Q 042175 14 AIVEMSSAIGSEGLAAGQIMDISSEG--KDVSLSELNFIHRHKSEKF-VEASIVSGVIIGGG-NE---EEIERMRNYGKC 86 (170)
Q Consensus 14 ~i~~l~~~~g~~~l~~GQ~~dl~~~~--~~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag~-~~---~~~~~l~~~g~~ 86 (170)
.+..+.+.. ...+.|...+..+.. ..+|.++|..+ +..|+.. +-+.+ ....+... ++ +....-..+-..
T Consensus 138 ~~~~~~~~~--~~~~~~~~~e~~~~~~~~~ps~eeYl~~-R~~t~g~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (270)
T PF03936_consen 138 QIKRFRNSW--REYLNAYLWEARWRERGRIPSLEEYLEM-RRHTSGVYPCLAL-IEFALEFALGELPPEVLEHPPMLRRL 213 (270)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHTTS--SHHHHHHH-HHHHTSHHHHHHH-HHHHCSSCHTHHHHHHHHTTHHHHHH
T ss_pred HhhHHHHHH--HHHHHHHHHHHHHhccCCCCCHHHHHHh-ccccccccHHHHH-HHHhCCCccccccHHHHHhchHHHHH
Confidence 334455555 556666666666643 34889999988 4555544 33322 21112211 12 222221226666
Q ss_pred HHHHHhHHhhhhhccCCCCCCCccchHhhhCCC-chHHHH------HHHHHHHHHHHHHHHHHHHh
Q 042175 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKA-TYPKLV------GIDESKNYAKELLAKAKQEL 145 (170)
Q Consensus 87 lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~-t~~~l~------~~e~a~~~~~~~~~~a~~~L 145 (170)
.+.+--+.||+..+. +++.+|.. +++.++ +++.|.+.+.+.++++.+.+
T Consensus 214 ~~~~~~l~NDl~S~~----------KE~~~g~~~N~v~~l~~~~~~s~e~A~~~v~~~~~~~~~ef 269 (270)
T PF03936_consen 214 AADIIRLVNDLYSYK----------KEIARGDVHNLVVVLMNEHGLSLEEAVDEVAEMINECIREF 269 (270)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHTTSCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhh----------cchhhcccccHHHHhhhhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 666677779998773 34555544 555443 57788888888888777655
No 23
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=93.81 E-value=2.8 Score=34.90 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=72.9
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~ 104 (170)
..|+.|..+|+.... ..+.+++...+ +-|+...+. -+..+++-.+ ......+...+|.|+|+.+=++|+
T Consensus 106 ~~~~da~~~Dl~~~~-y~~~~eL~~Yc-~~vAg~vG~--l~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRdv---- 174 (288)
T COG1562 106 PALIDAMRMDLDRTR-YLDFEELEEYC-YGVAGAVGL--LLARILGPDK---DAATRAYARGLGLALQLVNILRDV---- 174 (288)
T ss_pred HHHHHHHHHHhhhcc-ccCHHHHHHHH-HHhHHHHHH--HHHHHhCccc---chhhHHHHHHHHHHHHHHHHHHHh----
Confidence 678999999997653 24566665554 444433322 1233444322 234556666699999999988886
Q ss_pred CCCCccchHhhhCCCchHHH----H------------------HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042175 105 ETKETTGRDMLRGKATYPKL----V------------------GIDESKNYAKELLAKAKQELAYFDPA 151 (170)
Q Consensus 105 ~~gk~~~~D~~~gk~t~~~l----~------------------~~e~a~~~~~~~~~~a~~~L~~l~~~ 151 (170)
+.|..+|+.=+|.= + .+++-...++.+...|...+..+|..
T Consensus 175 ------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~~ 237 (288)
T COG1562 175 ------GEDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGR 237 (288)
T ss_pred ------HHHHhCCcccCCHHHHHHhCCCHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCcc
Confidence 56777788777731 1 24555567889999999999999863
No 24
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=93.58 E-value=3.5 Score=33.77 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=61.7
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccH-HHHHHHHHHHHHHhcC--CCHHHH--HHHHHHHHHHHHHHhHHhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKS-EKFVEASIVSGVIIGG--GNEEEI--ERMRNYGKCVGMAYQLWNDI 97 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KT-g~L~~~~~~~ga~lag--~~~~~~--~~l~~~g~~lG~afQi~DDi 97 (170)
...+.|+..+..+. +..++.++|..+ +..| |..+.++ ++-...| .+++.. ..++.+-...+...-+.|||
T Consensus 139 ~~~~~a~~~e~~~~~~~~~psl~eYl~~-R~~~~g~~~~~~--l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl 215 (303)
T cd00687 139 EDYFDAYIWEGKNRLNGHVPDVAEYLEM-RRFNIGADPCLG--LSEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDI 215 (303)
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHH-hhhcccccccHH--HHHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 44556777776554 334899999988 5666 4333222 2222222 244433 34788889999999999999
Q ss_pred hhccCCCCCCCccchHh-hhCC-CchHHHH------HHHHHHHHHHHHHHHHHH
Q 042175 98 VDVIGSPETKETTGRDM-LRGK-ATYPKLV------GIDESKNYAKELLAKAKQ 143 (170)
Q Consensus 98 lD~~~~~~~gk~~~~D~-~~gk-~t~~~l~------~~e~a~~~~~~~~~~a~~ 143 (170)
..+.. ++ ..|. .|++.++ ..+.|.+.+...++++.+
T Consensus 216 ~S~~K----------E~~~~g~~~N~V~vl~~~~g~s~~eA~~~~~~~~~~~~~ 259 (303)
T cd00687 216 YSYEK----------EIKANGEVHNLVKVLAEEHGLSLEEAISVVRDMHNERIT 259 (303)
T ss_pred HhhHH----------HHHhCCccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 87732 23 3344 5666665 344455444444444333
No 25
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=91.09 E-value=6.8 Score=31.36 Aligned_cols=116 Identities=18% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHhhchhhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHH-HHHH-HHHHHHhcCCCH---HHHHHHHHHHHHHHHH
Q 042175 18 MSSAIGSEGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKF-VEAS-IVSGVIIGGGNE---EEIERMRNYGKCVGMA 90 (170)
Q Consensus 18 l~~~~g~~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L-~~~~-~~~ga~lag~~~---~~~~~l~~~g~~lG~a 90 (170)
+.+.. ...+.|...+..+. +..++.++|..+ +..|+.. +.++ +..+.-. ..++ .....+..+....+..
T Consensus 127 ~~~~~--~~~~~~~~~e~~~~~~~~~p~~~eYl~~-R~~~~g~~~~~~l~~~~~g~-~l~~~~~~~~~~~~~l~~~~~~~ 202 (284)
T cd00868 127 LKEAW--KDLLRAYLVEAKWANEGYVPSFEEYLEN-RRVSIGYPPLLALSFLGMGD-ILPEEAFEWLPSYPKLVRASSTI 202 (284)
T ss_pred HHHHH--HHHHHHHHHHHHHHHCCCCCCHHHHHHh-ceehhhHHHHHHHHHHHcCC-CCCHHHHHHhhhhHHHHHHHHHH
Confidence 44444 55667777777664 234899999999 5666544 3222 2222211 2244 4557788888888999
Q ss_pred HhHHhhhhhccCCCCCCCccchHhhhCC-CchHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 91 YQLWNDIVDVIGSPETKETTGRDMLRGK-ATYPKLV------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 91 fQi~DDilD~~~~~~~gk~~~~D~~~gk-~t~~~l~------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
--+.||+..+... ...|. .|++.++ .++.|.+.+.+.++...+.+.+
T Consensus 203 ~~l~NDl~S~~kE----------~~~g~~~N~v~vl~~~~~~~~~eA~~~~~~~~~~~~~~~~~ 256 (284)
T cd00868 203 GRLLNDIASYEKE----------IARGEVANSVECYMKEYGVSEEEALEELRKMIEEAWKELNE 256 (284)
T ss_pred HHHhccchHHHHH----------HccCCcccHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877432 23343 3777776 4566666666666666555543
No 26
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=89.71 E-value=5.3 Score=33.53 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHH
Q 042175 54 KSEKFVEASIVSG-VIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKN 132 (170)
Q Consensus 54 KTg~L~~~~~~~g-a~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~ 132 (170)
.-|.-++..+.+. +.+.|.+.+....+..--+-|=.|.=|.|||.| .++++.|++|.-..+|...|..
T Consensus 41 ~gGKriRp~L~ll~~~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRg~pt~~~~~G~~~Ail 109 (319)
T TIGR02748 41 AGGKRIRPVFVLLAGKFGDYDLDAIKHVAVALELIHMASLVHDDVID-----------DADLRRGRPTIKSKWGNRIAMY 109 (319)
T ss_pred cCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccccC-----------CCCCCCCCcCHHHHhChHHHHH
Confidence 3444444443333 233454555444555566677778889999976 3467888889888888888888
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 042175 133 YAKELLAKAKQELAYFDP 150 (170)
Q Consensus 133 ~~~~~~~~a~~~L~~l~~ 150 (170)
..+-.+..|.+.+..++.
T Consensus 110 ~GD~L~~~a~~~l~~~~~ 127 (319)
T TIGR02748 110 TGDYLFAKSLETMTEIKD 127 (319)
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 888888888888776643
No 27
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=89.42 E-value=4.6 Score=34.02 Aligned_cols=86 Identities=22% Similarity=0.168 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHH
Q 042175 53 HKSEKFVEASIVS-GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESK 131 (170)
Q Consensus 53 ~KTg~L~~~~~~~-ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~ 131 (170)
..-|..++..+.+ ++.+.|.+.+....+..--+-+=.+..|.||+.| .++++.|++|.-..+|...|.
T Consensus 41 ~~~GKrlRp~l~ll~~~~~g~~~~~~~~~A~avEllH~asLiHDDI~D-----------~s~~RRG~pt~~~~~G~~~Ai 109 (323)
T PRK10888 41 SGGGKRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHDDVVD-----------ESDMRRGKATANAAFGNAASV 109 (323)
T ss_pred hCCCchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHccccc-----------CCcccCCCCCHHHHhCccHHH
Confidence 3445565554333 2334454544444555666777778899999976 346788888888888877777
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 042175 132 NYAKELLAKAKQELAYFD 149 (170)
Q Consensus 132 ~~~~~~~~~a~~~L~~l~ 149 (170)
-..+-++..|.+.+..++
T Consensus 110 l~GD~L~~~a~~~l~~~~ 127 (323)
T PRK10888 110 LVGDFIYTRAFQMMTSLG 127 (323)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 777777777777766554
No 28
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=88.58 E-value=9.6 Score=34.40 Aligned_cols=112 Identities=18% Similarity=0.107 Sum_probs=73.4
Q ss_pred hhhhhhhHHhhhcCCC--CCCHHHHHHHHHccHHHHH-HHHHHHHHHhc-CCCHHHHHHHH---HHHHHHHHHHhHHhhh
Q 042175 25 EGLAAGQIMDISSEGK--DVSLSELNFIHRHKSEKFV-EASIVSGVIIG-GGNEEEIERMR---NYGKCVGMAYQLWNDI 97 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~--~~~~~~~~~i~~~KTg~L~-~~~~~~ga~la-g~~~~~~~~l~---~~g~~lG~afQi~DDi 97 (170)
..++.+-..+..|... .|+.++|......-+|... -..+..+ ++ ..+++..+.+. .+-...+....+.||+
T Consensus 366 ~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi 443 (542)
T cd00684 366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG--MGDILTEEAFEWLESRPKLVRASSTIGRLMNDI 443 (542)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh--cCCCCCHHHHHHHhccHHHHHHHHHHHHHhcCh
Confidence 5566677777777533 4899999999655444443 2222222 22 13555554443 5777888899999998
Q ss_pred hhccCCCCCCCccchHhhhCC-CchHHHH------HHHHHHHHHHHHHHHHHHHhhcC
Q 042175 98 VDVIGSPETKETTGRDMLRGK-ATYPKLV------GIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 98 lD~~~~~~~gk~~~~D~~~gk-~t~~~l~------~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
..+... ...|. +|.+.++ +.+.|.+.+.+.++.+++.+.+.
T Consensus 444 ~S~~kE----------~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e 491 (542)
T cd00684 444 ATYEDE----------MKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEE 491 (542)
T ss_pred hhhHHH----------HhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 766332 34454 4777666 47889999999999999988864
No 29
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=88.37 E-value=3.1 Score=33.98 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=32.6
Q ss_pred HHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHH
Q 042175 86 CVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKEL 137 (170)
Q Consensus 86 ~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~ 137 (170)
-+-.++++..|+.|..+ |...|+.|+|+.+|.+.++....-.
T Consensus 172 l~~~~~~~~~d~~D~e~----------D~~~G~~Tlpv~lG~~~t~~~~~~~ 213 (285)
T PRK12872 172 LKSFIREIVFDIKDIEG----------DRKSGLKTLPIVLGKERTLKFLLIL 213 (285)
T ss_pred HHHHHHHHHHhcccchh----------HHHcCCcccchhcchHHHHHHHHHH
Confidence 34568889999988755 5678999999999988887764443
No 30
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=87.35 E-value=8.8 Score=30.94 Aligned_cols=68 Identities=31% Similarity=0.347 Sum_probs=50.4
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 71 GGNE-EEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 71 g~~~-~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
|.++ +....+..--+-+=.+.-|.|||.| .++.+.|++|+-..+|...|.....-....+.+.+..++
T Consensus 34 g~~~~~~~~~la~aiEllh~asLIhDDI~D-----------~s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~ 102 (259)
T cd00685 34 GGPELEAALRLAAAIELLHTASLVHDDVMD-----------NSDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLG 102 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhcc-----------CCcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhCC
Confidence 4344 5556666777778889999999966 234678888888888887777777777878877777664
No 31
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=85.62 E-value=6.3 Score=32.68 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=33.2
Q ss_pred HHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHH
Q 042175 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELL 138 (170)
Q Consensus 87 lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~ 138 (170)
+..++.+.+++.|+.+ |-..|+.|+|+.+|.+.+...+.-.+
T Consensus 172 ~~~a~~ii~~irDie~----------Dr~~G~~Tlpv~lG~~~a~~~~~~l~ 213 (282)
T PRK13105 172 WGMASHAFGAVQDVVA----------DREAGIASIATVLGARRTVRLAVGLY 213 (282)
T ss_pred HHHHHHHHHhCcchHh----------HHHcCCccchHHhcHHHHHHHHHHHH
Confidence 3668999999999855 66889999999999888777654433
No 32
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=85.24 E-value=5.1 Score=32.38 Aligned_cols=73 Identities=27% Similarity=0.241 Sum_probs=58.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 042175 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQEL 145 (170)
Q Consensus 66 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L 145 (170)
.+.+.+.+.+....+...-+.+=.+.=|.|||.| .++.|.|++|.-..+|...+....+-.+..|.+.+
T Consensus 24 ~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D-----------~s~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~~l 92 (260)
T PF00348_consen 24 AAEALGGDPEKAIPLAAAVELIHAASLIHDDIID-----------NSDLRRGKPTVHKKFGNAIAILAGDYLLALAFELL 92 (260)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCSEETTEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-----------ccccCCCCccccccccccchhhhchHHHHHHHHHH
Confidence 3344455666677777888888889999999976 33578899998899999999888888888888888
Q ss_pred hcCC
Q 042175 146 AYFD 149 (170)
Q Consensus 146 ~~l~ 149 (170)
..++
T Consensus 93 ~~~~ 96 (260)
T PF00348_consen 93 ARLG 96 (260)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8776
No 33
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=84.74 E-value=5.3 Score=32.54 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHH
Q 042175 59 VEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYA 134 (170)
Q Consensus 59 ~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~ 134 (170)
+..+...|....+......=.+.-+.--+.+.+++..|+.|..+ |.+.|..|+|+.+|.+.+...+
T Consensus 139 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~----------D~~~G~~Tl~v~~G~~~~~~~~ 204 (279)
T PRK12884 139 TGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEG----------DRLRGARTLAILYGEKIAGRIA 204 (279)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHcCCeeechHhcHHHHHHHH
Confidence 34444444443333322222223344455567788888888754 6688999999999887766543
No 34
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=82.92 E-value=1.8 Score=29.46 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHh
Q 042175 74 EEEIERMRNYGKCVGMAYQLWN 95 (170)
Q Consensus 74 ~~~~~~l~~~g~~lG~afQi~D 95 (170)
++..+.+-+||..+|-+||+.=
T Consensus 15 et~~e~llRYGLf~GAIFQliC 36 (85)
T PF06783_consen 15 ETFFENLLRYGLFVGAIFQLIC 36 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999964
No 35
>PRK13591 ubiA prenyltransferase; Provisional
Probab=82.09 E-value=3.6 Score=34.60 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHH
Q 042175 89 MAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKEL 137 (170)
Q Consensus 89 ~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~ 137 (170)
++..+.+|+.|..+ |..+|+.|+|+.+|.+.++....-.
T Consensus 193 ~~~~iindirDiEG----------Dr~~G~kTLPV~lG~~~A~~l~~~l 231 (307)
T PRK13591 193 FINSCVYDFKDVKG----------DTLAGIKTLPVSLGEQKTRNLLLGI 231 (307)
T ss_pred HHHHHHHHhhhhHh----------HHHcCCeeEEEEECHHHHHHHHHHH
Confidence 44457899998854 6789999999999999887764443
No 36
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=81.19 E-value=20 Score=30.10 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 77 IERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 77 ~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
...+..--+.+=.|.-|.||+.| .+++|.|++|.-..+|...|.-..+-.+..|.+.+..++
T Consensus 69 ~~~~A~avEliH~asLiHDDiiD-----------~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~ 130 (322)
T TIGR02749 69 HRRLAEITEMIHTASLVHDDVID-----------ESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLE 130 (322)
T ss_pred HHHHHHHHHHHHHHHHHHccccc-----------CccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455556677778889999976 346788999999888888887777777777777776654
No 37
>PLN00012 chlorophyll synthetase; Provisional
Probab=78.69 E-value=7.2 Score=33.69 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.4
Q ss_pred HHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHH
Q 042175 86 CVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135 (170)
Q Consensus 86 ~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~ 135 (170)
-+++++-+.+|+.|+.+ |.+.|+.|+|+.+|.+.++..+-
T Consensus 263 l~~lai~ivnd~~Die~----------Dr~aG~~TLpV~~G~~~a~~l~~ 302 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEG----------DRALGLQSLPVAFGVETAKWICV 302 (375)
T ss_pred HHHHHHHHHhhhcchhh----------HHHcCCcccceeechHHHHHHHH
Confidence 47888999999988754 66889999999999887776643
No 38
>PRK10581 geranyltranstransferase; Provisional
Probab=77.09 E-value=35 Score=28.41 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHH
Q 042175 54 KSEKFVEASIVSG-VIIGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDES 130 (170)
Q Consensus 54 KTg~L~~~~~~~g-a~lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a 130 (170)
.-|.-++-.+.+. +.+.|.+.+....+..--+.+=.+.-|.||+ .| .+|+|.|++|.-..+|...|
T Consensus 42 ~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~aSLiHDDip~~D-----------~s~~RRG~pt~h~~~G~~~A 110 (299)
T PRK10581 42 LGGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD-----------DDDLRRGLPTCHVKFGEANA 110 (299)
T ss_pred cCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccccc-----------CCCccCCCcChHHHhCcchH
Confidence 3355555443332 2333445554445555556666777889998 65 45788999999999988888
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 042175 131 KNYAKELLAKAKQELAYF 148 (170)
Q Consensus 131 ~~~~~~~~~~a~~~L~~l 148 (170)
.-.-+-+...|.+.+...
T Consensus 111 Il~GD~L~~~a~~~l~~~ 128 (299)
T PRK10581 111 ILAGDALQTLAFSILSDA 128 (299)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 888777788887777655
No 39
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=77.06 E-value=19 Score=29.29 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=30.3
Q ss_pred HHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHH
Q 042175 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKEL 137 (170)
Q Consensus 87 lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~ 137 (170)
.-+++-+.+|+.|..+ |.+.|..|+|+.+|.+.+...+--+
T Consensus 169 ~~~~~~~~~~~~D~e~----------D~~~G~~tlpv~~G~~~t~~~~~~~ 209 (276)
T PRK12882 169 ATLAREIIKDVEDIEG----------DRAEGARTLPILIGVRKALYVAAAF 209 (276)
T ss_pred HHHHHHHHhhhhhhhh----------HHHcCCccccHHhhHHHHHHHHHHH
Confidence 4456777788877644 6688999999999998877654433
No 40
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=75.27 E-value=7.8 Score=32.62 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=44.3
Q ss_pred HHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042175 83 YGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDP 150 (170)
Q Consensus 83 ~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~ 150 (170)
-=+.+=.+-=|.||+.| .+|.|.|++|....+|...|.-.-+.+...|-+.+...+.
T Consensus 74 avEliH~~SLiHDDvmD-----------~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~ 130 (322)
T COG0142 74 AIELIHTASLIHDDLMD-----------DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGS 130 (322)
T ss_pred HHHHHHHHHHHHhhccc-----------CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33444455567899854 3578999999999999988888888888888888888754
No 41
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=75.11 E-value=15 Score=28.90 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHH
Q 042175 61 ASIVSGVIIGGGN-EEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKN 132 (170)
Q Consensus 61 ~~~~~ga~lag~~-~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~ 132 (170)
....+|+...+.+ ....-.+.-+.--++.+....+|+.|+.+ |.+.|+.|+|+.+|.+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~----------D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 131 LLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEG----------DRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHH----------HHHcCCcchHHHHHHHHHHH
Confidence 3444444444433 22222333344677777888889888754 66889999999999888876
No 42
>CHL00151 preA prenyl transferase; Reviewed
Probab=73.35 E-value=28 Score=29.22 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042175 79 RMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 79 ~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
.+..--+.+=.+.-|.||+.| .++.|.|++|.-..+|...|.-.-+-+...|-..+..+
T Consensus 72 ~~A~aiEllH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~ 130 (323)
T CHL00151 72 RLAEITEIIHTASLVHDDVID-----------ECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANL 130 (323)
T ss_pred HHHHHHHHHHHHHHHHccccc-----------CccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhC
Confidence 344445566667788899965 34677888888887776666555555555555555444
No 43
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=73.30 E-value=29 Score=28.30 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=24.7
Q ss_pred HHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHH
Q 042175 90 AYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135 (170)
Q Consensus 90 afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~ 135 (170)
++-+..|+.|+ ..|.+.|..|+|+.+|.+.+...+-
T Consensus 169 ~~~~~~~~~D~----------~~D~~~G~~tlpv~~G~~~a~~~~~ 204 (279)
T PRK09573 169 SREIVKDIEDI----------EGDLKENVITLPIKYGIKKSWYIAK 204 (279)
T ss_pred HHHHHhhhhhh----------hhHHHCCCccccHHhhHHHHHHHHH
Confidence 34444666665 3467789999999998877666543
No 44
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=70.50 E-value=31 Score=28.08 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=28.8
Q ss_pred HHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHH
Q 042175 89 MAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKEL 137 (170)
Q Consensus 89 ~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~ 137 (170)
+++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++..+.-+
T Consensus 168 ~~~~~~~~~~D~e~----------D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 168 VAREIMKDIEDIEG----------DKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred HHHHHHhhhhhhcc----------HHHcCCcCcChHhcHHHHHHHHHHH
Confidence 45667788877644 6688999999999988776655443
No 45
>PRK13595 ubiA prenyltransferase; Provisional
Probab=67.72 E-value=29 Score=29.04 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHH
Q 042175 58 FVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKEL 137 (170)
Q Consensus 58 L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~ 137 (170)
++..+...++...|..... . ..-...-.+++|++.-|+.|..+ |...|..|+|+.+|.+.+-..+.-.
T Consensus 154 ~~g~p~~~~~~~~g~~~~~-~-~l~a~~~w~~g~dii~ai~Dieg----------Dr~~Gi~Slpv~lG~r~a~~~a~~~ 221 (292)
T PRK13595 154 AYALPLALPALALGAPVPW-P-PLLALMAWSVGKHAFDAAQDIPA----------DRAAGTRTVATTLGVRGTALYALAW 221 (292)
T ss_pred HHHHHHHHHHHHcCCcchH-H-HHHHHHHHHHHHHHHHhccChHh----------HHHcCCeechHHhCcHhHHHHHHHH
Confidence 3566777777777754221 1 12233455689999999999754 6688999999999988877776665
Q ss_pred HHHHHHHhhcC
Q 042175 138 LAKAKQELAYF 148 (170)
Q Consensus 138 ~~~a~~~L~~l 148 (170)
.--+.-.+-..
T Consensus 222 ~~~a~~~~~~~ 232 (292)
T PRK13595 222 FLLAGALLWPV 232 (292)
T ss_pred HHHHHHHHHHh
Confidence 55554444433
No 46
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=66.76 E-value=59 Score=25.28 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhc
Q 042175 63 IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDV 100 (170)
Q Consensus 63 ~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~ 100 (170)
+.+.+.+.|.+.+....+..--+.|=.+.-+.|||.|=
T Consensus 6 ~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI~D~ 43 (236)
T cd00867 6 VLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDD 43 (236)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 33344444556665666677777777788899999773
No 47
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=65.78 E-value=34 Score=28.46 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHH
Q 042175 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135 (170)
Q Consensus 87 lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~ 135 (170)
+..++-+.+|+.|+. .|.+.|+.|+|+.+|.+.+.....
T Consensus 195 ~~~~i~~~n~~~D~e----------~D~~~G~~Tlpv~lG~~~a~~~~~ 233 (306)
T TIGR02056 195 AGLGIAIVNDFKSVE----------GDRALGLQSLPVAFGIETAAWICV 233 (306)
T ss_pred HHHHHHHHHHccChH----------HHHHcCCcCcchhcChHHHHHHHH
Confidence 444555778887764 477899999999999887776654
No 48
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=64.39 E-value=4.5 Score=33.14 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=27.6
Q ss_pred HhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHH
Q 042175 91 YQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKE 136 (170)
Q Consensus 91 fQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~ 136 (170)
+.+.+|+.|.. .|.+.|+.|+|+.+|.+.++....-
T Consensus 177 i~~~nd~~D~~----------~D~~~G~~Tl~v~lG~~~a~~l~~~ 212 (283)
T TIGR01476 177 IMTLNDFKSVE----------GDRQLGLRSLPVMIGVKRAAIVAVT 212 (283)
T ss_pred HHHHHhccchh----------hHHHcCCcCcceEEcHHHHHHHHHH
Confidence 56677877764 4678899999999998888775444
No 49
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=64.37 E-value=29 Score=28.93 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=27.1
Q ss_pred HHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHH
Q 042175 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNY 133 (170)
Q Consensus 87 lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~ 133 (170)
+-+++-+.+|+.|.. .|.+.|+.|+|+.+|.+.++..
T Consensus 187 w~~~~~~~~a~~D~e----------~D~~~G~~Tlpv~~G~~~t~~~ 223 (297)
T PRK12871 187 WTMAHLGLNDFIDLE----------NDRARGMKSIAVLYGMKGTMYW 223 (297)
T ss_pred HHHHHHHHHHHhhhh----------hHHHcCCeeeeeeechHHHHHH
Confidence 345567777877764 4778899999999988766643
No 50
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=63.67 E-value=15 Score=30.80 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=29.4
Q ss_pred HHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHH
Q 042175 86 CVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135 (170)
Q Consensus 86 ~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~ 135 (170)
-+-.++.+.+|+.|..+ |.+.|+.|+|+.+|.+.+...+.
T Consensus 193 ~~~~~~~l~~di~D~eg----------D~~~Gi~Tlav~lG~~~a~~l~~ 232 (308)
T PRK12887 193 VFTFAIAIFKDIPDMEG----------DRQYQITTFTLRLGKQAVFKLSC 232 (308)
T ss_pred HHHHHHHHHHhccchhh----------HHHcCCcchhHHHhHHHHHHHHH
Confidence 34456677788887754 67889999999998887765433
No 51
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=60.40 E-value=75 Score=27.10 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHccHHHHHHHHHHHHHHhcC-CCHHHHHHHHH-HHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCC
Q 042175 42 VSLSELNFIHRHKSEKFVEASIVSGVIIGG-GNEEEIERMRN-YGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKA 119 (170)
Q Consensus 42 ~~~~~~~~i~~~KTg~L~~~~~~~ga~lag-~~~~~~~~l~~-~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~ 119 (170)
+.++.|+..+. ||+-++.-|-+++.... .+++..+.+.+ |.-.++=..=+.|=++|. ..|...|-.
T Consensus 177 p~l~W~EfaAa--tGSTLgIF~L~a~A~~p~~t~~~a~~i~~aYFPwI~gLHILLDy~IDq----------~EDr~~GdL 244 (330)
T PF10776_consen 177 PELEWWEFAAA--TGSTLGIFALFAYAADPDLTPEDAEKIKDAYFPWICGLHILLDYFIDQ----------EEDREGGDL 244 (330)
T ss_pred CCccHHHHHHH--hccHHHHHHHHHHHcCCCCCHHHHHHHHHcccHHHHHHHHHHHHHhhh----------HhHhcCCCc
Confidence 34555555543 88887777756555543 35666666554 555555555555555554 346667777
Q ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042175 120 TYPKLV-GIDESKNYAKELLAKAKQELAYFDPA 151 (170)
Q Consensus 120 t~~~l~-~~e~a~~~~~~~~~~a~~~L~~l~~~ 151 (170)
|+..-| ..+.+.+++...+++|.+.+..+|.+
T Consensus 245 NFv~YY~~~~~~~~Rl~~f~~~A~~~~~~Lp~~ 277 (330)
T PF10776_consen 245 NFVFYYPDEEEMEERLKYFVEKALEQASRLPYP 277 (330)
T ss_pred eeeeeCCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 888777 47788899999999999999999864
No 52
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=59.89 E-value=58 Score=26.57 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=26.3
Q ss_pred HHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHH
Q 042175 90 AYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKE 136 (170)
Q Consensus 90 afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~ 136 (170)
.+-+..|+.|+. .|.+.|..|+|+.+|.+.+...+--
T Consensus 173 ~~~~i~~~~D~e----------~D~~~G~~tlpv~~G~~~a~~~~~~ 209 (282)
T TIGR01475 173 GFDLIYAIQDYE----------FDRKNGLHSIPARFGIKAALKIASL 209 (282)
T ss_pred HHHHHHHHhhHH----------hHHHcCCCchHHHhchHHHHHHHHH
Confidence 445566766664 4678899999999998777665443
No 53
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=59.64 E-value=48 Score=27.14 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHH
Q 042175 56 EKFVEASIVSGVIIGGG-NEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYA 134 (170)
Q Consensus 56 g~L~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~ 134 (170)
|..+..+.-.|+...+. .....-.+.-+..-..++|.+..|+.|..+| ..+|..|.|+.+|.+.+...+
T Consensus 147 g~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D----------~~~G~~s~~~~~G~~~a~~l~ 216 (289)
T COG0382 147 GLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGD----------RKAGLKSLPVLFGIKKALALA 216 (289)
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccch----------HhcCCcchHHHhCchhHHHHH
Confidence 45566666666655553 2334456777788888999999999998664 477888999999877666655
Q ss_pred HHHH
Q 042175 135 KELL 138 (170)
Q Consensus 135 ~~~~ 138 (170)
.-+.
T Consensus 217 ~~~~ 220 (289)
T COG0382 217 LLLL 220 (289)
T ss_pred HHHH
Confidence 4444
No 54
>PLN02279 ent-kaur-16-ene synthase
Probab=58.63 E-value=52 Score=31.38 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=63.7
Q ss_pred hhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcC--CCHHHH--HHHHHHHHHHHHHHhHHhhhhh
Q 042175 26 GLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFVEASIVSGVIIGG--GNEEEI--ERMRNYGKCVGMAYQLWNDIVD 99 (170)
Q Consensus 26 ~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag--~~~~~~--~~l~~~g~~lG~afQi~DDilD 99 (170)
.++.+=..+..|. +..++.++|.+...- |..+-...+ .+..+.| .+++.. ....++-+..+....+.||+..
T Consensus 601 ~ll~ayl~EAeW~~~g~vPT~eEYL~na~v-S~~l~~i~l-~~~~~~G~~l~eev~e~~~~~~L~~l~s~I~RLlNDI~S 678 (784)
T PLN02279 601 DLLKSMLTEAQWSSNKSTPTLDEYMTNAYV-SFALGPIVL-PALYLVGPKLSEEVVDSPELHKLYKLMSTCGRLLNDIRG 678 (784)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHhhchh-hhhhHHHHH-HHHHHhCCCCCHHHHhCcchhHHHHHHHHHHHHHHhccc
Confidence 3444444444454 334799999988543 222211111 1111222 234433 2345677788888899999865
Q ss_pred ccCCCCCCCccchHhhhCCCchHHHH--------HHHHHHHHHHHHHHHHHHHhhcC
Q 042175 100 VIGSPETKETTGRDMLRGKATYPKLV--------GIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 100 ~~~~~~~gk~~~~D~~~gk~t~~~l~--------~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
+.. ...+|+.|.+.+| +.|.|.+.++..++.+++.+.+.
T Consensus 679 ~e~----------E~~rG~~nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~ 725 (784)
T PLN02279 679 FKR----------ESKEGKLNAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRL 725 (784)
T ss_pred cHh----------HHhCCCcceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 533 2344555555554 36788888889999988888864
No 55
>PLN02878 homogentisate phytyltransferase
Probab=58.05 E-value=21 Score=29.70 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=34.1
Q ss_pred HHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHH
Q 042175 83 YGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAK 140 (170)
Q Consensus 83 ~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~ 140 (170)
|.--+..+.-+..|+.|+.| |...|..|+|+.+|.+.+...+--...-
T Consensus 164 f~~~f~~~i~i~KDi~DieG----------D~~~Gi~Tlpv~lG~~~~~~i~~~ll~~ 211 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEG----------DRIFGIRSFSVRLGQKRVFWLCVNLLEM 211 (280)
T ss_pred HHHHHHHHHHHHhhCcCchh----------HHHCCCceechhhChHHHHHHHHHHHHH
Confidence 33344445569999999876 5578889999999988877765544333
No 56
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=57.58 E-value=12 Score=30.99 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=30.1
Q ss_pred HHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHH
Q 042175 86 CVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNY 133 (170)
Q Consensus 86 ~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~ 133 (170)
-+.+++.+.+++.|.. .|.+.|+.|+|+.+|.+.+...
T Consensus 176 l~~~~~~~in~i~Die----------~D~~aGi~Tlav~lG~~~a~~~ 213 (282)
T PRK12875 176 LWAMGMHTFSAIPDIE----------PDRAAGIRTTATVLGERRTYAY 213 (282)
T ss_pred HHHHHHHHHHhccCHH----------HHHHcCCccchhhccHhhHHHH
Confidence 5567778888888864 4778899999999998877654
No 57
>PLN02890 geranyl diphosphate synthase
Probab=56.92 E-value=87 Score=27.59 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 79 RMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 79 ~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
.+...-+-|=.|.-|-||+.| .+|.+.|++|.-..+|...|.-.-+-++..|...+..++
T Consensus 165 ~~AaavEliH~ASLVHDDIiD-----------~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~ 224 (422)
T PLN02890 165 NIAEITEMIHVASLLHDDVLD-----------DADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALK 224 (422)
T ss_pred HHHHHHHHHHHHHHHHccccc-----------CCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCC
Confidence 455566667778889999976 346788888988888888887777777777777776553
No 58
>PLN02857 octaprenyl-diphosphate synthase
Probab=53.20 E-value=57 Score=28.64 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 042175 77 IERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQE 144 (170)
Q Consensus 77 ~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~ 144 (170)
...+...-+-|=.|.=|-|||.| .+|++.|++|.-..+|...|.-.-+-++.+|-+.
T Consensus 163 ~~~lAaaiEliH~ASLIHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~ 219 (416)
T PLN02857 163 HRRLAEITEMIHTASLIHDDVLD-----------ESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWY 219 (416)
T ss_pred HHHHHHHHHHHHHHHHHHCcccc-----------CCcccCCCCCccccCCcceeeeHHHHHHHHHHHH
Confidence 34455555666667788999976 3356677776666554443333333333333333
No 59
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=50.87 E-value=11 Score=31.59 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=26.9
Q ss_pred HHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHH
Q 042175 90 AYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYA 134 (170)
Q Consensus 90 afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~ 134 (170)
++-+.+|+.|.. .|.+.|+.|+|+.+|.+.++...
T Consensus 204 ~~~~~~d~~D~e----------~D~~aG~~Tlpv~~G~~~a~~l~ 238 (314)
T PRK07566 204 GIMTLNDFKSVE----------GDRQLGLRSLPVVFGEKNAARIA 238 (314)
T ss_pred HHHHHHHHHHhH----------hHHHcCCcccceeEcHHHHHHHH
Confidence 357788888864 47788999999999988766554
No 60
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=49.63 E-value=42 Score=28.44 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHH
Q 042175 83 YGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKEL 137 (170)
Q Consensus 83 ~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~ 137 (170)
+.--+.+++-+.+|+.|..+ |.+.|+.|+|+.+|.+.+...+--+
T Consensus 188 ~~~l~~~~~~~i~d~~D~eg----------D~~~G~kTlpV~~G~~~a~~i~~~~ 232 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEG----------DKEGGLKSLTVMIGAKNTFLVSFII 232 (331)
T ss_pred HHHHHHHHHHHHHcccchhh----------HHHcCCeeeEeEEcHhhHHHHHHHH
Confidence 33445577777888877644 6788999999999877766554333
No 61
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=47.74 E-value=65 Score=26.34 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=25.5
Q ss_pred HHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHH
Q 042175 89 MAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135 (170)
Q Consensus 89 ~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~ 135 (170)
.++-+.+|+.|.. .|.+.|+.|+|+.+|.+.++....
T Consensus 182 ~~~~~~n~~~D~~----------~D~~~G~~Tl~v~lG~~~a~~~~~ 218 (293)
T PRK06080 182 GAVLLANNIRDIE----------TDRENGKNTLAVRLGDKNARRLHA 218 (293)
T ss_pred HHHHHhcCCCcch----------hHHHcCCeeEEeeECcHhHHHHHH
Confidence 3444566776654 467889999999988777665433
No 62
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=45.80 E-value=1.3e+02 Score=24.52 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=23.1
Q ss_pred HHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHH
Q 042175 89 MAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKN 132 (170)
Q Consensus 89 ~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~ 132 (170)
..|.+..++.|.. .|.+.|+.|+|+.+|.+.++-
T Consensus 174 ~~~~~~~a~~D~e----------~D~~~G~~tlpv~~G~~~~~~ 207 (281)
T TIGR01474 174 LGYDTIYAMQDKE----------DDIKIGVKSTALRFGDNTKPW 207 (281)
T ss_pred HHHHHHHHHhhHH----------hHHHcCCCcccHHhhhhhHHH
Confidence 3444555666653 467889999999998765433
No 63
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=44.69 E-value=1.1e+02 Score=27.36 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=63.7
Q ss_pred HHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCC-hHHH
Q 042175 83 YGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKAT---YPKLVGIDESKNYAKELLAKAKQELAYF-DPAK-AAPL 156 (170)
Q Consensus 83 ~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t---~~~l~~~e~a~~~~~~~~~~a~~~L~~l-~~~~-~~~L 156 (170)
...-|.-||-..-.=--+.++. ..=|....|..+.-.| |...||+..+.-++-.|+..|-++|.+- |... ++.|
T Consensus 216 L~e~L~~af~~y~~~hPWv~~~~l~PKSVvRdM~E~amtF~dyV~~YgLaRSEGvlLRYLsDAyraL~qtVP~~~rteel 295 (461)
T PF12029_consen 216 LAELLEAAFETYRRGHPWVGDFELSPKSVVRDMYERAMTFSDYVSRYGLARSEGVLLRYLSDAYRALRQTVPEDARTEEL 295 (461)
T ss_pred hHHHHHHHHHHHHhcCCcccCCCCCcchHHHHHHHhhCCHHHHHHHhCcchhhhHHHHHHHHHHHHHhhhCChhhcCchH
Confidence 4667777887776655555555 5556778898888777 5567899999999999999999999986 6543 4788
Q ss_pred HHHHHHHHh
Q 042175 157 DHLVNFMVS 165 (170)
Q Consensus 157 ~~l~~~~~~ 165 (170)
.+++.++..
T Consensus 296 ~dii~WLge 304 (461)
T PF12029_consen 296 EDIIEWLGE 304 (461)
T ss_pred HHHHHHHHH
Confidence 888887753
No 64
>PRK13592 ubiA prenyltransferase; Provisional
Probab=36.72 E-value=67 Score=27.02 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHH
Q 042175 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKE 136 (170)
Q Consensus 80 l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~ 136 (170)
+.-++--.++++-|..|+.| .++. ++-.|+|.++|.+.|...+.-
T Consensus 180 l~l~afl~~l~rEI~KdieD-~gd~-----------~~~~Tlpi~~G~kkA~~ia~~ 224 (299)
T PRK13592 180 LAFTMYFPSLIWEVCRKIRA-PKDE-----------TEYVTYSKLFGYKKATRFIEV 224 (299)
T ss_pred HHHHHHHHHHHHHHHHhhcC-Cccc-----------cCCeeechhccchhHHHHHHH
Confidence 34577778899999999998 4432 346699999987776655433
No 65
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=36.33 E-value=1.3e+02 Score=24.79 Aligned_cols=78 Identities=12% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHccHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH-----hHHhhhhhccCCCCCCCccchHhh
Q 042175 42 VSLSELNFIHRHKSEKFVEASIVSGVIIGGGN-EEEIERMRNYGKCVGMAY-----QLWNDIVDVIGSPETKETTGRDML 115 (170)
Q Consensus 42 ~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~-~~~~~~l~~~g~~lG~af-----Qi~DDilD~~~~~~~gk~~~~D~~ 115 (170)
.....|.++.+-++-.+...++-+|+.++... .+. ..-+.--+|..+ .+.||+.|..-|...-++..+-+-
T Consensus 8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~---~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~ 84 (296)
T PRK04375 8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPL---LLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLV 84 (296)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCC
Confidence 34678889999999999999999999998532 111 111222233333 789999996544322223445567
Q ss_pred hCCCchH
Q 042175 116 RGKATYP 122 (170)
Q Consensus 116 ~gk~t~~ 122 (170)
.|+.|..
T Consensus 85 sG~is~~ 91 (296)
T PRK04375 85 TGRISPR 91 (296)
T ss_pred CCCcCHH
Confidence 7777744
No 66
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=36.14 E-value=2.3e+02 Score=23.61 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=25.5
Q ss_pred HHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHH
Q 042175 89 MAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135 (170)
Q Consensus 89 ~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~ 135 (170)
+.|-+..++.|+. .|.+.|..|+|+.+| +.+...+.
T Consensus 191 ~~~d~iya~~D~e----------~D~~~Gi~Slpv~~G-~~a~~~~~ 226 (300)
T PRK13106 191 AGFDLYNHIPDAE----------FDREMGLHSFAVVLG-KWALTFAG 226 (300)
T ss_pred HHHHHHHHccchh----------hHHHCCCCccHHHHh-hhHHHHHH
Confidence 3355566666653 467889999999999 87766544
No 67
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=35.45 E-value=1.4e+02 Score=24.90 Aligned_cols=82 Identities=16% Similarity=0.063 Sum_probs=50.8
Q ss_pred CCHHHHHHHH---HccHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHH-----hHHhhhhhccCCCCCCCcc
Q 042175 42 VSLSELNFIH---RHKSEKFVEASIVSGVIIGGGNEE---EIERMRNYGKCVGMAY-----QLWNDIVDVIGSPETKETT 110 (170)
Q Consensus 42 ~~~~~~~~i~---~~KTg~L~~~~~~~ga~lag~~~~---~~~~l~~~g~~lG~af-----Qi~DDilD~~~~~~~gk~~ 110 (170)
.+...|.+.. +-+|-.+.-.++..|..+|..... ..+...-+---+|... .+.||+.|..-|....++.
T Consensus 28 ~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~ 107 (314)
T PRK12878 28 PWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTR 107 (314)
T ss_pred hhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 4567899998 788999999999999999854200 0111111222333333 7899999965443333344
Q ss_pred chHhhhCCCchHH
Q 042175 111 GRDMLRGKATYPK 123 (170)
Q Consensus 111 ~~D~~~gk~t~~~ 123 (170)
.+-+..|+.|...
T Consensus 108 ~RPl~sG~is~~~ 120 (314)
T PRK12878 108 SRPLPSGQVSRKQ 120 (314)
T ss_pred CCCCCCCCcCHHH
Confidence 5567778777543
No 68
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=34.53 E-value=15 Score=30.94 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=23.5
Q ss_pred hHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHH
Q 042175 92 QLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNY 133 (170)
Q Consensus 92 Qi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~ 133 (170)
.+.|++.|+ .+|.++||.|+|+.+|.+.+...
T Consensus 206 ll~Nn~~D~----------e~D~~~gk~TL~v~lG~~~a~~l 237 (317)
T PRK13387 206 MLANNLRDL----------DEDIKNHRYTLVYYIGREKGVVL 237 (317)
T ss_pred HHhcCCccc----------hhHHHcCCeeeeeeEcHHhHHHH
Confidence 445666665 45889999999999887766554
No 69
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=32.74 E-value=38 Score=21.62 Aligned_cols=29 Identities=3% Similarity=0.110 Sum_probs=22.2
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHhcc
Q 042175 139 AKAKQELAYFDPAKAAPLDHLVNFMVSFD 167 (170)
Q Consensus 139 ~~a~~~L~~l~~~~~~~L~~l~~~~~~r~ 167 (170)
+...+.+..||+.....+.++++|+..|.
T Consensus 3 ~~l~~~i~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 3 EELLEKIQQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhc
Confidence 34556777888766788999999998774
No 70
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=29.40 E-value=1.8e+02 Score=24.27 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=48.2
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH-----hHHhhhhhccCCCCCCCccchHhhhC
Q 042175 44 LSELNFIHRHKSEKFVEASIVSGVIIGGGN-EEEIERMRNYGKCVGMAY-----QLWNDIVDVIGSPETKETTGRDMLRG 117 (170)
Q Consensus 44 ~~~~~~i~~~KTg~L~~~~~~~ga~lag~~-~~~~~~l~~~g~~lG~af-----Qi~DDilD~~~~~~~gk~~~~D~~~g 117 (170)
...|.++.+-+.-.+...++-+|..++... .+.... +.--+|.++ .+.||+.|..-|...-++..+-+-.|
T Consensus 13 l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~~~---~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG 89 (306)
T PRK13362 13 LKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPVLM---LAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTG 89 (306)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHHHH---HHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCC
Confidence 467888888888888888888899887321 111111 111234433 78999999654433344445667778
Q ss_pred CCchHH
Q 042175 118 KATYPK 123 (170)
Q Consensus 118 k~t~~~ 123 (170)
+.|-..
T Consensus 90 ~is~~~ 95 (306)
T PRK13362 90 EISLGE 95 (306)
T ss_pred CCCHHH
Confidence 877543
No 71
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=29.11 E-value=39 Score=27.96 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=18.7
Q ss_pred chHhhhCCCchHHHHHHHHHHHH
Q 042175 111 GRDMLRGKATYPKLVGIDESKNY 133 (170)
Q Consensus 111 ~~D~~~gk~t~~~l~~~e~a~~~ 133 (170)
.+|.+.||.|+|+.+|.+.+...
T Consensus 187 e~D~~~Gk~TL~v~lG~~~a~~l 209 (285)
T TIGR02235 187 EDDLAHGKRSPVVRLGTKLAAKI 209 (285)
T ss_pred hhHHHcCCcceeheecHHhHHHH
Confidence 56889999999999987776654
No 72
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=28.68 E-value=3.2e+02 Score=22.19 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=46.3
Q ss_pred CHHHHHHHHHccHHHHHHHHHHHHHHhcCC--CHHHHHHH-HHHHH-HHHHHHhHHhhhhhccC-CC-CCCCccchHhhh
Q 042175 43 SLSELNFIHRHKSEKFVEASIVSGVIIGGG--NEEEIERM-RNYGK-CVGMAYQLWNDIVDVIG-SP-ETKETTGRDMLR 116 (170)
Q Consensus 43 ~~~~~~~i~~~KTg~L~~~~~~~ga~lag~--~~~~~~~l-~~~g~-~lG~afQi~DDilD~~~-~~-~~gk~~~~D~~~ 116 (170)
+...|.+..|-+|-..-..|+-+|+.++.. ...-...+ .-.+- -+=.+=.+.||+.|+.. .+ ..-....+-+.+
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~ 81 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGR 81 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccC
Confidence 456788888999988888888888887721 11111111 11111 11123468999999963 22 111112334667
Q ss_pred CCCchHHH
Q 042175 117 GKATYPKL 124 (170)
Q Consensus 117 gk~t~~~l 124 (170)
|+.|....
T Consensus 82 G~is~~~~ 89 (293)
T PRK06080 82 GGISPKQV 89 (293)
T ss_pred CCCCHHHH
Confidence 77776653
No 73
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=27.98 E-value=3.3e+02 Score=22.14 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=47.2
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHhcCCC-HHHHHHH-HH-HHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCch
Q 042175 45 SELNFIHRHKSEKFVEASIVSGVIIGGGN-EEEIERM-RN-YGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATY 121 (170)
Q Consensus 45 ~~~~~i~~~KTg~L~~~~~~~ga~lag~~-~~~~~~l-~~-~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~ 121 (170)
..|.++.+-++..+...++-.|+.++... .+....+ .- -+--+-.+=.+.||+.|..-|...-++..+-+-.|+.|-
T Consensus 3 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~ 82 (279)
T PRK12869 3 KAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNR 82 (279)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCH
Confidence 46888889999999999999999988432 1111111 11 111122233889999996555432333456677777764
Q ss_pred H
Q 042175 122 P 122 (170)
Q Consensus 122 ~ 122 (170)
.
T Consensus 83 ~ 83 (279)
T PRK12869 83 K 83 (279)
T ss_pred H
Confidence 4
No 74
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=27.80 E-value=2.4e+02 Score=24.08 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=33.1
Q ss_pred cchHhhhCCCchHHHHHHHHHHHHHHHHHHHHH-HHhhcCCC-CChHHHHHHHHHHHh
Q 042175 110 TGRDMLRGKATYPKLVGIDESKNYAKELLAKAK-QELAYFDP-AKAAPLDHLVNFMVS 165 (170)
Q Consensus 110 ~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~-~~L~~l~~-~~~~~L~~l~~~~~~ 165 (170)
.--|+++|+.++.-+. +.+.++++++-..+. .+-..+|+ ++.+.+.+|+..+-.
T Consensus 267 ~LL~IK~G~~~~eev~--e~~~~l~~e~e~a~~~a~~s~LP~~pD~~~i~~~l~~vy~ 322 (330)
T PHA02603 267 FILDVKAGKHPFKEVQ--EFLEEIVDEVEAAADEASKNGMPQKVDMEFWDDFLEEVYL 322 (330)
T ss_pred HHHHHHcCCCcHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHHH
Confidence 3467888888887664 566666666444333 22336775 356777777766544
No 75
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=27.70 E-value=1.7e+02 Score=23.70 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=45.3
Q ss_pred HHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-----hHHhhhhhccCCCCCCCccchHhhhCCCc
Q 042175 46 ELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAY-----QLWNDIVDVIGSPETKETTGRDMLRGKAT 120 (170)
Q Consensus 46 ~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~af-----Qi~DDilD~~~~~~~gk~~~~D~~~gk~t 120 (170)
.|.++.+-++-.+...++..|..++..... .+...-+.--+|... .+.||+.|..-|...-++..+-+-.|+.|
T Consensus 2 ~~~~l~rp~~~~~~~~~~~~g~~la~~~~~-~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is 80 (280)
T TIGR01473 2 DYLQLTKPRIISLLLITAFAGMWLAPGGAL-VNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRIS 80 (280)
T ss_pred chHHHccHHHHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcC
Confidence 367788888888888888899988854310 011111222233332 78999999754432223334556677766
Q ss_pred hHH
Q 042175 121 YPK 123 (170)
Q Consensus 121 ~~~ 123 (170)
...
T Consensus 81 ~~~ 83 (280)
T TIGR01473 81 PRE 83 (280)
T ss_pred HHH
Confidence 543
No 76
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=27.69 E-value=41 Score=28.36 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.2
Q ss_pred CCccchHhhhCCCchHHHHHHHHHHHH
Q 042175 107 KETTGRDMLRGKATYPKLVGIDESKNY 133 (170)
Q Consensus 107 gk~~~~D~~~gk~t~~~l~~~e~a~~~ 133 (170)
..+.-+|.++||.|+|+.+|-..++..
T Consensus 198 irDie~D~~~gk~TLavrLG~~~~~~l 224 (303)
T COG1575 198 LRDIEEDIRNGKYTLAVRLGRKNARKL 224 (303)
T ss_pred cccchhHHhcCCcceeeeeccHhHHHH
Confidence 445567999999999998876555543
No 77
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=27.63 E-value=46 Score=27.51 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=20.5
Q ss_pred chHhhhCCCchHHHHHHHHHHHHHHH
Q 042175 111 GRDMLRGKATYPKLVGIDESKNYAKE 136 (170)
Q Consensus 111 ~~D~~~gk~t~~~l~~~e~a~~~~~~ 136 (170)
..|.+.||.|+|+.+|.+.++....-
T Consensus 190 ~~D~~~Gk~Tl~v~lG~~~a~~l~~~ 215 (284)
T TIGR00751 190 PTDARAGKNTLAVRLGDARTRMYHQG 215 (284)
T ss_pred hhHHHcCCEeehhhcchHhHHHHHHH
Confidence 45789999999999998887765433
No 78
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=25.78 E-value=3.8e+02 Score=22.04 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=24.9
Q ss_pred HHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHH
Q 042175 88 GMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAK 135 (170)
Q Consensus 88 G~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~ 135 (170)
-++|.+..++.|. ..|.+.|..|+|+.+|.+.+.....
T Consensus 179 ~~~~d~~~a~~D~----------e~D~~~G~~slav~~G~~~~~~~~~ 216 (290)
T PRK12870 179 TLGFDTVYAMSDR----------EDDLRIGVNSSAIFFGRYAPEAIGL 216 (290)
T ss_pred HHHHHHHHHhhhH----------hhHHHCCCcchhHHhccccHHHHHH
Confidence 3344445555554 3477889999999998776654433
No 79
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=25.62 E-value=46 Score=27.83 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.3
Q ss_pred cchHhhhCCCchHHHHHHHHHHHH
Q 042175 110 TGRDMLRGKATYPKLVGIDESKNY 133 (170)
Q Consensus 110 ~~~D~~~gk~t~~~l~~~e~a~~~ 133 (170)
..+|.+.||.|+|+.+|.+.++..
T Consensus 199 ~e~D~~~Gk~TL~v~lG~~~a~~l 222 (304)
T PRK07419 199 VEDDLAAGKRSPIVRLGTKRGAQL 222 (304)
T ss_pred hhhHHHcCCcceeeeechHhHHHH
Confidence 356889999999999987777654
No 80
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=25.07 E-value=2.2e+02 Score=23.80 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=37.6
Q ss_pred CHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHh----HHhhhhhccC
Q 042175 43 SLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVG-MAYQ----LWNDIVDVIG 102 (170)
Q Consensus 43 ~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG-~afQ----i~DDilD~~~ 102 (170)
+.+.|.+..|-+|-..-..|+-+|..++-......+...-..--+| ++.| +.||+-|+..
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~ 66 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKK 66 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 4567888999999999888899988886311101122222222333 3355 5899999865
No 81
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=23.51 E-value=2.7e+02 Score=21.70 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=11.5
Q ss_pred HHHhHHhhhhhccCC
Q 042175 89 MAYQLWNDIVDVIGS 103 (170)
Q Consensus 89 ~afQi~DDilD~~~~ 103 (170)
+.++||+|+.|+-++
T Consensus 60 ~L~~IQ~~LF~lG~d 74 (184)
T COG2096 60 ILRRIQNDLFDLGAD 74 (184)
T ss_pred HHHHHHHHHHHhhhh
Confidence 458999999988443
No 82
>PHA02130 hypothetical protein
Probab=23.39 E-value=99 Score=20.09 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=17.6
Q ss_pred hhhhhccCCC--CCCC-ccchHhhhCCCchH
Q 042175 95 NDIVDVIGSP--ETKE-TTGRDMLRGKATYP 122 (170)
Q Consensus 95 DDilD~~~~~--~~gk-~~~~D~~~gk~t~~ 122 (170)
|||+++--.+ -.|- |...||.+||-|++
T Consensus 32 ddil~ipfkstv~w~lcp~~qdi~ngke~fv 62 (81)
T PHA02130 32 DDILSIPFKSTVYWDLCPYAQDIHNGKENFV 62 (81)
T ss_pred cchhcccccceeeeccCcchhhhhcCcceee
Confidence 5677663222 2222 56789999998875
No 83
>PLN02922 prenyltransferase
Probab=23.10 E-value=50 Score=27.75 Aligned_cols=27 Identities=15% Similarity=0.120 Sum_probs=20.6
Q ss_pred cchHhhhCCCchHHHHHHHHHHHHHHH
Q 042175 110 TGRDMLRGKATYPKLVGIDESKNYAKE 136 (170)
Q Consensus 110 ~~~D~~~gk~t~~~l~~~e~a~~~~~~ 136 (170)
...|.+.||.|+|+.+|.+.++....-
T Consensus 213 ~e~D~~~Gk~TL~v~lG~~~a~~l~~~ 239 (315)
T PLN02922 213 IDGDRAVGKMSPLVRLGTEKGSRVVRW 239 (315)
T ss_pred hhhHHHcCccceeeEEChHHHHHHHHH
Confidence 356889999999999988777655433
No 84
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=22.47 E-value=1.6e+02 Score=23.92 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=16.3
Q ss_pred HhhhCCCchHHHHHHHHHHHHH
Q 042175 113 DMLRGKATYPKLVGIDESKNYA 134 (170)
Q Consensus 113 D~~~gk~t~~~l~~~e~a~~~~ 134 (170)
|.+.|.+|+|+.+|.+.+...+
T Consensus 186 d~~~G~~tl~v~~G~~~a~~~~ 207 (280)
T TIGR01473 186 YRAAGIPMLPVVKGERITKRQI 207 (280)
T ss_pred HHHCCCccCCcccCHHHHHHHH
Confidence 5577889999999877665443
No 85
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=21.42 E-value=4.7e+02 Score=21.63 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=41.5
Q ss_pred CHHHHHHHHHccHHHHHHHHHHHHHHhc----CC-CHHHH---HHHHHHHHHHHHHHhHHhhhhhccCCC-C----CC--
Q 042175 43 SLSELNFIHRHKSEKFVEASIVSGVIIG----GG-NEEEI---ERMRNYGKCVGMAYQLWNDIVDVIGSP-E----TK-- 107 (170)
Q Consensus 43 ~~~~~~~i~~~KTg~L~~~~~~~ga~la----g~-~~~~~---~~l~~~g~~lG~afQi~DDilD~~~~~-~----~g-- 107 (170)
+...|.+..|-+|-.+.-.+.-.|+.+| |. +-... -...-+..+. +. +.||+.|..-|. + .+
T Consensus 4 ~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~a--g~-~iND~~D~~~D~~~v~rtm~r~ 80 (297)
T PRK12871 4 TLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEA--GF-VLNDYVDRKRDRLDVENTLTRY 80 (297)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH--HH-HHhhHHHHhcCcchHhhhhhcc
Confidence 4567888888887765545544665554 32 22111 1122233333 34 899999997653 2 22
Q ss_pred -Cc-cchHhhhCCCchH
Q 042175 108 -ET-TGRDMLRGKATYP 122 (170)
Q Consensus 108 -k~-~~~D~~~gk~t~~ 122 (170)
|| ..+-+..|+.|--
T Consensus 81 ~~P~~~Rpl~sG~is~~ 97 (297)
T PRK12871 81 WRPFKERPIPSGKLSSK 97 (297)
T ss_pred ccCCCCCccCCCCcCHH
Confidence 22 2344566666533
No 86
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=21.27 E-value=4.7e+02 Score=21.47 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=17.4
Q ss_pred chHhhhCCCchHHHHHHHHHHH
Q 042175 111 GRDMLRGKATYPKLVGIDESKN 132 (170)
Q Consensus 111 ~~D~~~gk~t~~~l~~~e~a~~ 132 (170)
..|.+.|..|+|+.+|.+.+..
T Consensus 185 e~D~~~Gv~sl~v~~G~~~a~~ 206 (284)
T PRK12888 185 EVDRRIGVRSVPARFGVRAALW 206 (284)
T ss_pred HHHHHCCCcCcchhhCchhHHH
Confidence 3477889999999998876654
No 87
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=20.82 E-value=2.8e+02 Score=22.86 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=59.6
Q ss_pred HHHHHHHccHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHH
Q 042175 46 ELNFIHRHKSEKFVEASIVSGVI-IGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKL 124 (170)
Q Consensus 46 ~~~~i~~~KTg~L~~~~~~~ga~-lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l 124 (170)
.|..+ -.|-|.=|+.-+.++.- .-+.+.+....+.+.-+-+--+==++|||.| .+-++.|.++.-.+
T Consensus 26 Py~yi-lq~PGKqfR~~L~~afNhwl~~P~dkLaii~~ivemLHNsSLLIDDIED-----------Ns~LRRG~pvaHsI 93 (322)
T KOG0777|consen 26 PYNYI-LQKPGKQFRLNLIVAFNHWLNLPKDKLAIISQIVEMLHNSSLLIDDIED-----------NSPLRRGQPVAHSI 93 (322)
T ss_pred hHHHH-HhCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccceeeccccc-----------cchhhcCCcchhhh
Confidence 34444 46777776654433221 1134555444444444444444445677654 33478898899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042175 125 VGIDESKNYAKELLAKAKQELAYFDP 150 (170)
Q Consensus 125 ~~~e~a~~~~~~~~~~a~~~L~~l~~ 150 (170)
||+..+.+.++--+-.|.+...++..
T Consensus 94 yGvpStINtANY~yFlalekV~qLdh 119 (322)
T KOG0777|consen 94 YGVPSTINTANYMYFLALEKVSQLDH 119 (322)
T ss_pred ccCcchhhhhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999854
No 88
>PTZ00465 rhoptry-associated protein 1 (RAP-1); Provisional
Probab=20.24 E-value=3.3e+02 Score=24.76 Aligned_cols=82 Identities=7% Similarity=0.057 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHHHhcCC-C---HHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHH
Q 042175 54 KSEKFVEASIVSGVIIGGG-N---EEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE 129 (170)
Q Consensus 54 KTg~L~~~~~~~ga~lag~-~---~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~ 129 (170)
++++-++.+-+.|++.... . .+.++.....--..-.++||.+|..++.+.. +-....+++.|.. -.+.
T Consensus 17 ~s~~A~R~~q~~~~MAp~~~vgdvt~tl~~aD~~i~a~~~~~~i~~dM~~~l~~~--~e~~vD~VC~~~~------E~s~ 88 (565)
T PTZ00465 17 HHVSAFRHNQRVGSLAPAEVVGDLTSTLETADTLMTLRDHMHNITKDMKHVLSNG--REQIVNDVCSNAP------EDSN 88 (565)
T ss_pred ccHHHhhhhhhccccCCccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHhCCC------chhh
Confidence 4444455555555554332 2 2233444455556678999999999987643 3344556666542 1347
Q ss_pred HHHHHHHHHHHHHH
Q 042175 130 SKNYAKELLAKAKQ 143 (170)
Q Consensus 130 a~~~~~~~~~~a~~ 143 (170)
|++.+..|+++|.+
T Consensus 89 Cr~~V~~YV~RCk~ 102 (565)
T PTZ00465 89 CREVVNNYADRCEM 102 (565)
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999875
Done!