Query 042175
Match_columns 170
No_of_seqs 104 out of 1053
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f62_A Geranyltranstransferase 100.0 3.5E-40 1.2E-44 273.9 18.9 164 5-169 131-296 (317)
2 3ts7_A Geranyltranstransferase 100.0 3.6E-40 1.2E-44 274.5 18.6 164 5-169 138-303 (324)
3 3p8l_A Geranyltranstransferase 100.0 7.3E-40 2.5E-44 270.5 16.4 163 4-166 135-302 (302)
4 3lsn_A Geranyltranstransferase 100.0 1.1E-39 3.8E-44 269.7 16.6 163 5-168 132-296 (304)
5 3uca_A Geranyltranstransferase 100.0 2.5E-39 8.4E-44 269.5 17.5 160 8-168 162-324 (324)
6 3p8r_A Geranyltranstransferase 100.0 1.2E-39 4.1E-44 269.4 15.3 161 7-168 140-302 (302)
7 1rtr_A Geranyltranstransferase 100.0 3.6E-39 1.2E-43 266.4 17.2 164 5-168 128-293 (301)
8 2h8o_A Geranyltranstransferase 100.0 5.6E-39 1.9E-43 268.6 16.4 163 5-168 172-335 (335)
9 3lom_A Geranyltranstransferase 100.0 7.8E-39 2.7E-43 265.5 16.4 162 6-169 138-304 (313)
10 1rqj_A Geranyltranstransferase 100.0 7.6E-39 2.6E-43 264.3 15.5 164 5-168 132-299 (299)
11 3m0g_A Farnesyl diphosphate sy 100.0 9.4E-39 3.2E-43 263.4 13.8 158 7-168 129-289 (297)
12 3pde_A Farnesyl-diphosphate sy 100.0 1.1E-38 3.7E-43 264.1 11.4 165 4-168 134-300 (309)
13 3llw_A Geranyltranstransferase 100.0 1.9E-36 6.6E-41 251.0 16.9 162 5-168 139-305 (311)
14 3npk_A Geranyltranstransferase 100.0 5.2E-36 1.8E-40 246.4 16.1 160 4-165 124-284 (291)
15 3oyr_A Trans-isoprenyl diphosp 100.0 7.6E-36 2.6E-40 250.5 17.3 154 12-167 150-344 (345)
16 1wy0_A Geranylgeranyl pyrophos 100.0 7.8E-36 2.7E-40 250.3 16.6 162 5-168 129-342 (342)
17 3apz_A Geranyl diphosphate syn 100.0 1.4E-35 4.7E-40 249.3 18.0 155 12-168 152-348 (348)
18 3mzv_A Decaprenyl diphosphate 100.0 1.8E-35 6.1E-40 248.0 18.6 155 12-168 138-333 (341)
19 3rmg_A Octaprenyl-diphosphate 100.0 4.9E-35 1.7E-39 244.8 19.6 154 12-168 132-326 (334)
20 3lmd_A Geranylgeranyl pyrophos 100.0 2.6E-35 8.9E-40 248.4 17.8 154 13-168 160-352 (360)
21 3pko_A Geranylgeranyl pyrophos 100.0 6.7E-35 2.3E-39 244.0 17.7 154 13-168 143-334 (334)
22 4dhd_A Polyprenyl synthetase; 100.0 7.3E-35 2.5E-39 245.7 18.0 155 10-168 129-336 (358)
23 3nf2_A Putative polyprenyl syn 100.0 1.4E-34 4.8E-39 243.4 17.1 156 11-168 141-344 (352)
24 2ftz_A Geranyltranstransferase 100.0 2.8E-35 9.4E-40 241.4 12.2 147 13-166 134-284 (284)
25 3aqb_B Component B of hexapren 100.0 3.2E-34 1.1E-38 239.1 17.5 155 12-168 129-325 (325)
26 3lk5_A Geranylgeranyl pyrophos 100.0 1.4E-34 4.9E-39 245.5 14.9 162 4-167 166-372 (380)
27 3ipi_A Geranyltranstransferase 100.0 5.2E-34 1.8E-38 234.9 13.5 150 13-169 127-285 (295)
28 2j1p_A Geranylgeranyl pyrophos 100.0 2.6E-33 8.8E-38 230.7 17.2 150 6-168 141-293 (293)
29 3tc1_A Octaprenyl pyrophosphat 100.0 2.3E-33 7.9E-38 232.9 16.0 147 12-163 121-306 (315)
30 1wmw_A Geranylgeranyl diphosph 100.0 6.3E-33 2.2E-37 231.6 16.2 153 12-168 129-330 (330)
31 1yhl_A Farnesyl pyrophosphate 100.0 2.6E-33 8.8E-38 236.6 13.3 156 10-168 148-362 (362)
32 2qis_A Farnesyl pyrophosphate 100.0 1.2E-32 4E-37 233.4 15.8 156 10-168 173-374 (374)
33 1uby_A FPS, farnesyl diphospha 100.0 1.5E-32 5.2E-37 232.3 15.9 156 10-168 166-367 (367)
34 2q80_A Geranylgeranyl pyrophos 100.0 2.9E-32 1E-36 225.1 14.1 149 13-169 111-298 (301)
35 2e8v_A Geranylgeranyl pyrophos 100.0 3.1E-32 1.1E-36 228.3 12.6 157 6-165 124-339 (340)
36 2ihi_A Pyrophosphate synthase; 100.0 6.2E-32 2.1E-36 230.3 13.5 154 10-166 175-394 (395)
37 3dyh_A Farnesyl pyrophosphate 100.0 3.7E-32 1.3E-36 231.5 11.8 155 11-168 177-390 (390)
38 1v4e_A Octoprenyl-diphosphate 100.0 3.3E-31 1.1E-35 218.6 14.9 134 12-150 126-287 (299)
39 3mav_A Farnesyl pyrophosphate 100.0 2.7E-30 9.2E-35 220.3 15.2 152 10-167 175-391 (395)
40 2her_A Fragment, farnesyl pyro 100.0 2.3E-30 7.9E-35 218.6 13.5 150 11-166 166-354 (368)
41 2azj_A Geranylgeranyl pyrophos 100.0 6.4E-30 2.2E-34 210.0 12.6 141 13-168 135-281 (289)
42 2q58_A Fragment, farnesyl pyro 100.0 2.7E-28 9.3E-33 206.3 12.5 155 7-167 162-359 (368)
43 3kra_B Geranyl diphosphate syn 99.9 1.5E-24 5.1E-29 176.9 12.9 128 7-160 131-258 (274)
44 3qkc_B Geranyl diphosphate syn 99.9 2.5E-23 8.5E-28 169.6 14.9 128 7-164 133-260 (273)
45 4fp4_A Polyprenyl synthetase; 99.9 1.8E-23 6.3E-28 171.0 3.3 94 13-117 133-226 (285)
46 3acx_A Dehydrosqualene synthas 97.0 0.01 3.4E-07 48.0 11.6 110 25-151 111-242 (293)
47 3vj8_A Squalene synthase; farn 96.9 0.043 1.5E-06 45.4 14.8 113 25-150 121-255 (343)
48 4hd1_A Squalene synthase HPNC; 96.8 0.013 4.6E-07 47.3 11.3 109 25-151 107-237 (294)
49 3kb9_A EPI-isozizaene synthase 94.4 0.73 2.5E-05 38.2 12.5 112 25-147 187-310 (382)
50 1ps1_A Pentalenene synthase; a 94.2 1.8 6.1E-05 34.7 14.0 112 25-147 144-268 (337)
51 3g4d_A (+)-delta-cadinene synt 91.7 3.9 0.00013 35.9 13.3 111 25-147 376-500 (554)
52 3n0f_A Isoprene synthase; terp 90.7 7 0.00024 34.3 13.9 111 25-147 374-498 (555)
53 3m00_A Aristolochene synthase; 90.6 4.7 0.00016 35.3 12.7 110 25-147 372-495 (550)
54 1di1_A Aristolochene synthase; 90.4 5.3 0.00018 31.2 15.0 101 41-146 151-261 (300)
55 3rmg_A Octaprenyl-diphosphate 90.3 3 0.0001 34.1 10.6 68 71-149 63-130 (334)
56 3mzv_A Decaprenyl diphosphate 90.2 2.3 8E-05 34.9 9.9 73 66-149 64-136 (341)
57 4fp4_A Polyprenyl synthetase; 90.0 1.9 6.4E-05 34.7 8.9 67 73-150 66-132 (285)
58 3v1v_A 2-MIB synthase, 2-methy 89.2 1.8 6.1E-05 36.8 8.7 76 25-102 265-345 (433)
59 3pko_A Geranylgeranyl pyrophos 87.9 3.7 0.00013 33.5 9.5 70 69-149 69-139 (334)
60 2ong_A 4S-limonene synthase; m 87.8 13 0.00045 32.3 14.4 112 25-147 365-489 (543)
61 2q80_A Geranylgeranyl pyrophos 87.1 6.9 0.00023 31.4 10.6 69 71-150 41-109 (301)
62 4f62_A Geranyltranstransferase 86.8 6.6 0.00022 31.9 10.3 68 71-149 61-130 (317)
63 3bny_A Aristolochene synthase; 86.6 10 0.00036 29.9 15.1 101 41-143 165-272 (320)
64 2e8v_A Geranylgeranyl pyrophos 86.2 7 0.00024 31.9 10.3 69 71-150 56-124 (340)
65 3aqb_B Component B of hexapren 86.1 4.4 0.00015 32.9 9.0 72 67-149 56-127 (325)
66 3lmd_A Geranylgeranyl pyrophos 85.8 3.9 0.00013 33.8 8.6 72 67-149 86-158 (360)
67 3m0g_A Farnesyl diphosphate sy 85.6 6.5 0.00022 31.6 9.7 72 67-149 53-126 (297)
68 3nf2_A Putative polyprenyl syn 85.2 3.1 0.00011 34.3 7.7 74 66-150 65-138 (352)
69 2ftz_A Geranyltranstransferase 85.1 7 0.00024 31.2 9.6 69 71-150 62-132 (284)
70 1v4e_A Octoprenyl-diphosphate 83.9 6.3 0.00021 31.6 8.8 62 77-149 63-124 (299)
71 1wy0_A Geranylgeranyl pyrophos 83.5 6.2 0.00021 32.1 8.8 68 71-149 62-129 (342)
72 2azj_A Geranylgeranyl pyrophos 82.6 5.2 0.00018 32.0 7.8 70 69-149 63-133 (289)
73 3oyr_A Trans-isoprenyl diphosp 82.4 4 0.00014 33.6 7.2 73 66-149 76-148 (345)
74 3pde_A Farnesyl-diphosphate sy 82.0 9.2 0.00031 30.9 9.2 61 78-149 73-135 (309)
75 3p8l_A Geranyltranstransferase 81.8 9.5 0.00033 30.7 9.1 69 69-148 65-135 (302)
76 1n1b_A (+)-bornyl diphosphate 81.4 4.4 0.00015 35.5 7.5 111 25-147 371-496 (549)
77 4dhd_A Polyprenyl synthetase; 81.4 4 0.00014 33.7 6.9 64 73-147 63-126 (358)
78 1wmw_A Geranylgeranyl diphosph 80.5 17 0.00058 29.4 10.3 71 67-148 51-121 (330)
79 1rqj_A Geranyltranstransferase 80.4 19 0.00066 28.7 10.5 71 67-148 56-128 (299)
80 3lsn_A Geranyltranstransferase 80.3 9.6 0.00033 30.7 8.7 71 68-149 57-129 (304)
81 3ipi_A Geranyltranstransferase 79.6 2.2 7.5E-05 34.4 4.6 63 75-148 62-124 (295)
82 3ts7_A Geranyltranstransferase 78.2 9.2 0.00031 31.1 8.0 68 71-149 66-135 (324)
83 2j1p_A Geranylgeranyl pyrophos 76.4 25 0.00085 27.9 10.0 69 69-148 66-136 (293)
84 2j5c_A 1,8-cineole synthase; t 76.3 13 0.00045 32.6 8.9 110 25-146 392-515 (569)
85 3npk_A Geranyltranstransferase 76.1 24 0.00081 28.2 9.8 64 74-148 59-124 (291)
86 1rtr_A Geranyltranstransferase 76.1 18 0.00061 29.0 9.1 68 70-148 57-126 (301)
87 3p5p_A Taxadiene synthase; cla 74.6 19 0.00065 32.8 9.7 111 25-147 576-701 (764)
88 3sdr_A Alpha-bisabolene syntha 74.1 19 0.00065 33.0 9.7 111 25-147 635-763 (817)
89 3s9v_A Abietadiene synthase, c 73.8 15 0.0005 33.7 8.8 111 25-147 607-732 (785)
90 2h8o_A Geranyltranstransferase 72.7 37 0.0013 27.6 10.3 70 68-148 98-169 (335)
91 3llw_A Geranyltranstransferase 72.2 25 0.00084 28.3 9.0 62 75-147 74-137 (311)
92 3lom_A Geranyltranstransferase 72.2 14 0.00049 29.8 7.6 71 67-148 62-134 (313)
93 3p8r_A Geranyltranstransferase 72.0 8.8 0.0003 30.9 6.3 73 66-149 61-135 (302)
94 2q58_A Fragment, farnesyl pyro 71.8 6.1 0.00021 32.6 5.4 53 85-148 105-157 (368)
95 3lk5_A Geranylgeranyl pyrophos 71.8 40 0.0014 27.9 10.4 64 74-148 87-166 (380)
96 4err_A Autotransporter adhesin 70.5 20 0.00069 23.7 8.1 72 74-167 8-81 (90)
97 3kra_B Geranyl diphosphate syn 69.3 12 0.00039 29.7 6.4 72 68-150 53-125 (274)
98 3uca_A Geranyltranstransferase 67.9 12 0.00041 30.5 6.3 70 67-147 86-157 (324)
99 3tc1_A Octaprenyl pyrophosphat 67.6 18 0.00063 29.1 7.4 60 79-149 61-120 (315)
100 3apz_A Geranyl diphosphate syn 61.5 63 0.0022 26.1 11.1 59 80-149 92-150 (348)
101 3qkc_B Geranyl diphosphate syn 60.1 25 0.00085 27.7 6.7 71 67-149 57-127 (273)
102 2ihi_A Pyrophosphate synthase; 48.1 67 0.0023 26.6 7.7 54 83-147 113-168 (395)
103 2her_A Fragment, farnesyl pyro 45.8 37 0.0013 28.0 5.7 62 75-147 95-159 (368)
104 2qis_A Farnesyl pyrophosphate 30.3 1.7E+02 0.0058 23.9 7.3 36 82-128 111-146 (374)
105 1yhl_A Farnesyl pyrophosphate 29.0 1.6E+02 0.0053 23.9 6.9 55 83-148 86-142 (362)
106 3fgx_A Rbstp2171; structural g 26.0 75 0.0026 21.8 3.7 57 42-104 45-106 (114)
107 1uby_A FPS, farnesyl diphospha 24.5 2.8E+02 0.0097 22.5 7.7 20 80-99 102-121 (367)
No 1
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=3.5e-40 Score=273.91 Aligned_cols=164 Identities=32% Similarity=0.578 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcC-CCHHHHHHHHHH
Q 042175 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGG-GNEEEIERMRNY 83 (170)
Q Consensus 5 ~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag-~~~~~~~~l~~~ 83 (170)
+++++.+.++++.+++++|..+|+.||.+|+.+.+..+++++|.+|+++|||+||++||++|++++| ++++..+.+++|
T Consensus 131 ~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~ 210 (317)
T 4f62_A 131 SAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAY 210 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4577888999999999998889999999999998767999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNF 162 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~ 162 (170)
|.+||+||||+||++|+++++ ..||+.++|+++||+|||+++|+++|++.+++|.++|++.|+.||+ .++.|.+|++|
T Consensus 211 g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~ 289 (317)
T 4f62_A 211 AHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANY 289 (317)
T ss_dssp HHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999999999999999999999999999999986 67899999999
Q ss_pred HHhcccC
Q 042175 163 MVSFDNV 169 (170)
Q Consensus 163 ~~~r~~~ 169 (170)
+.+|.+.
T Consensus 290 ~~~R~~~ 296 (317)
T 4f62_A 290 IIDRNHA 296 (317)
T ss_dssp HHC----
T ss_pred HHHhccc
Confidence 9999764
No 2
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=3.6e-40 Score=274.51 Aligned_cols=164 Identities=29% Similarity=0.517 Sum_probs=142.7
Q ss_pred CCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcC-CCHHHHHHHHHH
Q 042175 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGG-GNEEEIERMRNY 83 (170)
Q Consensus 5 ~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag-~~~~~~~~l~~~ 83 (170)
+.+++.+.++++.+++++|+.+|+.||.+|+.+..+.+++++|.+|+++|||+||++||++|++++| ++++..+.+++|
T Consensus 138 ~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~ 217 (324)
T 3ts7_A 138 AVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHY 217 (324)
T ss_dssp CCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4568889999999999999899999999999998767899999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNF 162 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~ 162 (170)
|.+||+||||+||++|+++++ .+||+.++|+++||+|||+++|+++|++.+++|.++|++.|+.||+ .++.|.+|++|
T Consensus 218 g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~ 296 (324)
T 3ts7_A 218 AKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP-EADLLRELARF 296 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999999999999999999999999999999987 47899999999
Q ss_pred HHhcccC
Q 042175 163 MVSFDNV 169 (170)
Q Consensus 163 ~~~r~~~ 169 (170)
+.+|.+.
T Consensus 297 ~~~R~~~ 303 (324)
T 3ts7_A 297 IIQRQSA 303 (324)
T ss_dssp HHHTSSS
T ss_pred HHhccCc
Confidence 9999764
No 3
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=7.3e-40 Score=270.54 Aligned_cols=163 Identities=24% Similarity=0.426 Sum_probs=138.9
Q ss_pred CCCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 042175 4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNY 83 (170)
Q Consensus 4 ~~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~ 83 (170)
.+++++.+.++++.+++++|..+|+.||.+|+.+....+++++|.+|+++|||+||++||++|++++|++++..+.+++|
T Consensus 135 ~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~ 214 (302)
T 3p8l_A 135 SQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQF 214 (302)
T ss_dssp SSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34678888999999999999899999999999998767899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCChHHHHH
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD----PAKAAPLDH 158 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~----~~~~~~L~~ 158 (170)
|.+||+||||+||++|+++++ ..||+.++|+++||+|||+++|++.|++.+++|.++|++.|+.|| +..++.|.+
T Consensus 215 g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~~~~~L~~ 294 (302)
T 3p8l_A 215 AHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKANVPNFSEEHLAN 294 (302)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChhHHHHHH
Confidence 999999999999999999998 999999999999999999999999999999999999999999996 346789999
Q ss_pred HHHHHHhc
Q 042175 159 LVNFMVSF 166 (170)
Q Consensus 159 l~~~~~~r 166 (170)
|++|+.+|
T Consensus 295 l~~~~~~R 302 (302)
T 3p8l_A 295 LLTQLQLR 302 (302)
T ss_dssp HHHHTSCC
T ss_pred HHHHHhhC
Confidence 99999887
No 4
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.1e-39 Score=269.72 Aligned_cols=163 Identities=33% Similarity=0.619 Sum_probs=141.3
Q ss_pred CCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCC-CHHHHHHHHHH
Q 042175 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGG-NEEEIERMRNY 83 (170)
Q Consensus 5 ~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~-~~~~~~~l~~~ 83 (170)
+++++.+.++++.+++++|..+|+.||.+|+.+..+.+++++|.+|+++|||+||++||++|++++|+ +++..+.+++|
T Consensus 132 ~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~ 211 (304)
T 3lsn_A 132 DASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTY 211 (304)
T ss_dssp CCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45788899999999999988889999999999987679999999999999999999999999999999 88899999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNF 162 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~ 162 (170)
|.+||+||||+||++|+++++ .+||+.++|+++||+|||+++|+++|++.++++.++|.+.|+.||+ .++.|.+|++|
T Consensus 212 g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~ 290 (304)
T 3lsn_A 212 AQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDA-AAEPLRELARY 290 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCG-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 999999999999999999988 9999999999999999999999999999999999999999999987 67899999999
Q ss_pred HHhccc
Q 042175 163 MVSFDN 168 (170)
Q Consensus 163 ~~~r~~ 168 (170)
+.+|.+
T Consensus 291 ~~~R~~ 296 (304)
T 3lsn_A 291 IVERRS 296 (304)
T ss_dssp HHC---
T ss_pred HHHhcc
Confidence 999965
No 5
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.5e-39 Score=269.51 Aligned_cols=160 Identities=28% Similarity=0.529 Sum_probs=135.8
Q ss_pred HHHH-HHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 042175 8 PDRL-LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGK 85 (170)
Q Consensus 8 ~~~~-~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~ 85 (170)
++.+ .++++.+++++|..+|+.||.+|+.+..+ .+++++|.+|+++|||+||++||++|++++|++++..+.+++||.
T Consensus 162 ~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~ 241 (324)
T 3uca_A 162 EGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGY 241 (324)
T ss_dssp HCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3445 78999999999889999999999999876 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 042175 86 CVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164 (170)
Q Consensus 86 ~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~~ 164 (170)
+||+||||+||++|+++++ .+||+.++|+++||+|||+++|++.|++.+++|.++|++.|+.||+ .++.|.+|++|+.
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la~~i~ 320 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKG-NTEPLKVLTMKLL 320 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999986 5689999999999
Q ss_pred hccc
Q 042175 165 SFDN 168 (170)
Q Consensus 165 ~r~~ 168 (170)
+|.+
T Consensus 321 ~R~~ 324 (324)
T 3uca_A 321 ERKF 324 (324)
T ss_dssp HCCC
T ss_pred hccC
Confidence 9964
No 6
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.2e-39 Score=269.37 Aligned_cols=161 Identities=27% Similarity=0.498 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Q 042175 7 SPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGG-GNEEEIERMRNYGK 85 (170)
Q Consensus 7 ~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag-~~~~~~~~l~~~g~ 85 (170)
+++.+.++++.+++++|..+|+.||.+|+.+.+..+++++|.+|+++|||+||++||++|++++| ++++..+.+++||.
T Consensus 140 ~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~ 219 (302)
T 3p8r_A 140 GETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAE 219 (302)
T ss_dssp HHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34557899999999998899999999999998766899999999999999999999999999999 78888899999999
Q ss_pred HHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 042175 86 CVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164 (170)
Q Consensus 86 ~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~~ 164 (170)
++|+||||+||++|+++++ ..||+.++|+++||+|||+++|+++|++.+++|.++|++.|+.||+ .++.|.+|++|+.
T Consensus 220 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~ 298 (302)
T 3p8r_A 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPY-NTEHLEEFARYVV 298 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999999999999999999999999999999999987 4789999999999
Q ss_pred hccc
Q 042175 165 SFDN 168 (170)
Q Consensus 165 ~r~~ 168 (170)
+|.+
T Consensus 299 ~R~~ 302 (302)
T 3p8r_A 299 ERKN 302 (302)
T ss_dssp HCCC
T ss_pred hccC
Confidence 9964
No 7
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=3.6e-39 Score=266.44 Aligned_cols=164 Identities=25% Similarity=0.446 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 042175 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYG 84 (170)
Q Consensus 5 ~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g 84 (170)
.++++...++++.+++++|..+|+.||++|+.+..+.+++++|.+|+++|||+||++||++|++++|++++..+.+++||
T Consensus 128 ~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g 207 (301)
T 1rtr_A 128 RLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYS 207 (301)
T ss_dssp TSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45777889999999999999999999999999877678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHH
Q 042175 85 KCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPA-KAAPLDHLVNF 162 (170)
Q Consensus 85 ~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~ 162 (170)
.++|+||||+||++|+++++ .+||+.++|+++||+|||+++|++++++.+++|.++|++.|+.||++ .++.|.++++|
T Consensus 208 ~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~ 287 (301)
T 1rtr_A 208 YHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDL 287 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999988 99999999999999999999999999999999999999999999854 57899999999
Q ss_pred HHhccc
Q 042175 163 MVSFDN 168 (170)
Q Consensus 163 ~~~r~~ 168 (170)
+.+|.+
T Consensus 288 i~~R~~ 293 (301)
T 1rtr_A 288 FYSRDH 293 (301)
T ss_dssp HHCC--
T ss_pred HHHhhc
Confidence 999975
No 8
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=5.6e-39 Score=268.56 Aligned_cols=163 Identities=27% Similarity=0.435 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 042175 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYG 84 (170)
Q Consensus 5 ~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g 84 (170)
+++++...++++.+++++|..+|+.||++|+.+..+.+++++|.+|+++|||+||++||++|++++|++++..+.+++||
T Consensus 172 ~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g 251 (335)
T 2h8o_A 172 PLAAERKAALVISLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFG 251 (335)
T ss_dssp CSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 46778889999999999999999999999999876578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 042175 85 KCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFM 163 (170)
Q Consensus 85 ~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~ 163 (170)
.++|+||||+||++|+++++ .+||+.++|+++||+|||+++|++++++.+++|.++|++.|+.||+ .++.|.+|++|+
T Consensus 252 ~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~i 330 (335)
T 2h8o_A 252 EKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE-KAAILIAAARFI 330 (335)
T ss_dssp HHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG-GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 99999999999999999998 9999999999999999999999999999999999999999999986 678999999999
Q ss_pred Hhccc
Q 042175 164 VSFDN 168 (170)
Q Consensus 164 ~~r~~ 168 (170)
.+|.+
T Consensus 331 ~~R~~ 335 (335)
T 2h8o_A 331 AERKS 335 (335)
T ss_dssp HC---
T ss_pred HhccC
Confidence 99963
No 9
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=7.8e-39 Score=265.53 Aligned_cols=162 Identities=24% Similarity=0.335 Sum_probs=139.4
Q ss_pred CCH-HHHHHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcC--CCHHHHHHHH
Q 042175 6 VSP-DRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGG--GNEEEIERMR 81 (170)
Q Consensus 6 ~~~-~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag--~~~~~~~~l~ 81 (170)
.++ +.+.++++.+++++|+.+|+.||.+|+.+..+ .+++++|.+|+++|||+||++||++ ++++| ++++..+.++
T Consensus 138 ~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~ 216 (313)
T 3lom_A 138 LLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALR 216 (313)
T ss_dssp TSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHH
Confidence 445 67899999999999989999999999999876 5899999999999999999999999 99999 8999999999
Q ss_pred HHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 042175 82 NYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLV 160 (170)
Q Consensus 82 ~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~ 160 (170)
+||.+||+||||+||++|+++++ .+||+.++|+++||+|||+++|+++|++.++++.++|.+.|+.||+ .++.|.+|+
T Consensus 217 ~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~la 295 (313)
T 3lom_A 217 TYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGS-KAAALIELT 295 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGG-GGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999987 478999999
Q ss_pred HHHHhcccC
Q 042175 161 NFMVSFDNV 169 (170)
Q Consensus 161 ~~~~~r~~~ 169 (170)
+|+.+|.++
T Consensus 296 ~~~~~R~~~ 304 (313)
T 3lom_A 296 KQLQNRSNL 304 (313)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhcccc
Confidence 999999764
No 10
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=7.6e-39 Score=264.29 Aligned_cols=164 Identities=30% Similarity=0.606 Sum_probs=155.0
Q ss_pred CCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 042175 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVII-GGGNEEEIERMRNY 83 (170)
Q Consensus 5 ~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~l-ag~~~~~~~~l~~~ 83 (170)
+++++...++++.+++++|+.+|+.||++|+.+..+.+++++|.+|+++|||+||++||++|+++ +|++++..+.+++|
T Consensus 132 ~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~ 211 (299)
T 1rqj_A 132 EVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKY 211 (299)
T ss_dssp TCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46888889999999999998999999999999976678999999999999999999999999999 99988899999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-C-ChHHHHHHH
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDP-A-KAAPLDHLV 160 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~-~-~~~~L~~l~ 160 (170)
|.++|+||||+||++|+++++ .+||+.++|+++||+|||+++|++++++.+++|.++|++.|+.||+ + .++.|.+|+
T Consensus 212 g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~L~~l~ 291 (299)
T 1rqj_A 212 AESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALA 291 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999998 8999999999999999999999999999999999999999999975 3 578999999
Q ss_pred HHHHhccc
Q 042175 161 NFMVSFDN 168 (170)
Q Consensus 161 ~~~~~r~~ 168 (170)
+|+.+|.+
T Consensus 292 ~~~~~R~~ 299 (299)
T 1rqj_A 292 DYIIQRNK 299 (299)
T ss_dssp HHHHHCCC
T ss_pred HHHHhccC
Confidence 99999963
No 11
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=9.4e-39 Score=263.40 Aligned_cols=158 Identities=27% Similarity=0.483 Sum_probs=127.8
Q ss_pred CHHHHHHHHHHHHHhhchhhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 042175 7 SPDRLLRAIVEMSSAIGSEGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYG 84 (170)
Q Consensus 7 ~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g 84 (170)
+++.+.++++.+++++|..+|+.||.+|+.+. +..+++++|.+|+.+|||+||++||++|++++|++++ .+++||
T Consensus 129 ~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g 205 (297)
T 3m0g_A 129 SAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYA 205 (297)
T ss_dssp CHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHH
Confidence 56778999999999999999999999999997 5568999999999999999999999999999998876 899999
Q ss_pred HHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 042175 85 KCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFM 163 (170)
Q Consensus 85 ~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~ 163 (170)
.+||+||||+||++|+++++ ..||+.++|+++||+|||+++|++.|++.++++.++|+++|+.||+ ..+.|.+|++|+
T Consensus 206 ~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~-~~~~L~~l~~~~ 284 (297)
T 3m0g_A 206 TALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGE-AASTLRACARYV 284 (297)
T ss_dssp HHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGG-GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999999999998 9999999999999999999999999999999999999999999987 458999999999
Q ss_pred Hhccc
Q 042175 164 VSFDN 168 (170)
Q Consensus 164 ~~r~~ 168 (170)
.+|.+
T Consensus 285 ~~R~~ 289 (297)
T 3m0g_A 285 IERDK 289 (297)
T ss_dssp TC---
T ss_pred HHhcc
Confidence 99965
No 12
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.1e-38 Score=264.11 Aligned_cols=165 Identities=23% Similarity=0.433 Sum_probs=143.1
Q ss_pred CCCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 042175 4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNY 83 (170)
Q Consensus 4 ~~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~ 83 (170)
.+++++.+.++++.+++++|..+|+.||.+|+.+.+..+++++|.+|+++|||+||++||++|++++|++++..+.+++|
T Consensus 134 ~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~ 213 (309)
T 3pde_A 134 TDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQF 213 (309)
T ss_dssp SSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45678888999999999999899999999999998767899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHH
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPA-KAAPLDHLVN 161 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~ 161 (170)
|.+||+||||+||++|+++++ .+||+.++|+++||+|||+++|++.+++.++++.++|.+.|+.+|.. ..+.|.+|++
T Consensus 214 g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~~~~~~~L~~l~~ 293 (309)
T 3pde_A 214 ADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPTSTQRDDLAAFFS 293 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999999999999999996542 1122999999
Q ss_pred HHHhccc
Q 042175 162 FMVSFDN 168 (170)
Q Consensus 162 ~~~~r~~ 168 (170)
|+.+|++
T Consensus 294 ~~~~r~~ 300 (309)
T 3pde_A 294 YFDTERV 300 (309)
T ss_dssp GSCTTTT
T ss_pred HHHHhhc
Confidence 9999964
No 13
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.9e-36 Score=250.97 Aligned_cols=162 Identities=27% Similarity=0.493 Sum_probs=137.4
Q ss_pred CCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHH-HHHHHH
Q 042175 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEI-ERMRNY 83 (170)
Q Consensus 5 ~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~-~~l~~~ 83 (170)
.+++..+.++++.+++++|+.+|+.||.+|+.+.+..+++++|.+|+++|||+||++||++|++++|++++.. +.+++|
T Consensus 139 ~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~ 218 (311)
T 3llw_A 139 LLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAF 218 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4677788999999999988899999999999998666899999999999999999999999999999998888 999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CC-hHHHHHH
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDP--AK-AAPLDHL 159 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~--~~-~~~L~~l 159 (170)
|.+||+||||+||++|+++++ .+||+.++ ++||+|||+++|++.+++.+++++++|.+.|+.|+. .. .+.|.+|
T Consensus 219 g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~~~~l~~l 296 (311)
T 3llw_A 219 GLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNAL 296 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCccHHHHHHHH
Confidence 999999999999999999998 99999877 999999999999999999999999999999999542 13 5789999
Q ss_pred HHHHHhccc
Q 042175 160 VNFMVSFDN 168 (170)
Q Consensus 160 ~~~~~~r~~ 168 (170)
++|+.+|+.
T Consensus 297 ~~~~~~r~~ 305 (311)
T 3llw_A 297 LNTLFKGEG 305 (311)
T ss_dssp HHHHHC---
T ss_pred HHHHHhccc
Confidence 999999964
No 14
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=5.2e-36 Score=246.36 Aligned_cols=160 Identities=26% Similarity=0.438 Sum_probs=134.4
Q ss_pred CCCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 042175 4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNY 83 (170)
Q Consensus 4 ~~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~ 83 (170)
..+++..+.++++.++++.|+.+|+.||.+|+.+.+..+++++|.+|+++|||+||++||++|++++|++++..+.+++|
T Consensus 124 ~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~ 203 (291)
T 3npk_A 124 AHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKL 203 (291)
T ss_dssp SSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34577888999999999977899999999999998767899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNF 162 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~ 162 (170)
|.+||+||||+||++|+++++ ..||+.+.| +||+|||.++|++.+++..++++++|.+.|+.|+....+.|++|++|
T Consensus 204 g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~~~~~l~~la~~ 281 (291)
T 3npk_A 204 GLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEKLAQMIQNLIIQ 281 (291)
T ss_dssp HHHHHHHHHHHHHHHHHC------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 999999999999999999999 999999776 99999999999999999999999999999999976237899999988
Q ss_pred HHh
Q 042175 163 MVS 165 (170)
Q Consensus 163 ~~~ 165 (170)
..+
T Consensus 282 ~~~ 284 (291)
T 3npk_A 282 YLE 284 (291)
T ss_dssp HC-
T ss_pred HHh
Confidence 654
No 15
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=7.6e-36 Score=250.54 Aligned_cols=154 Identities=27% Similarity=0.413 Sum_probs=126.3
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCCC-CCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKD-VSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~-~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++++ .+|++||++|+.+..+. +++++|.+|+.+|||+||++||++|++++|++++..+.+++||.++|+|
T Consensus 150 ~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 227 (345)
T 3oyr_A 150 MKALEILARAS--RVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLA 227 (345)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57888999999 89999999999997654 8999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH--------------------------------------HHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG--------------------------------------IDESK 131 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~--------------------------------------~e~a~ 131 (170)
|||+||++|+++++ ..||+.++|+++||+|||++++ +++++
T Consensus 228 FQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~ 307 (345)
T 3oyr_A 228 FQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATL 307 (345)
T ss_dssp HHHHHHHTTC-------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999998 9999999999999999999985 47899
Q ss_pred HHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhcc
Q 042175 132 NYAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFD 167 (170)
Q Consensus 132 ~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~ 167 (170)
+.+++|.++|++.|+.||++ .++.|.+|++|+++|.
T Consensus 308 ~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 308 DLAADYADKAKAALAMFPANDWREALEELADFAVSRR 344 (345)
T ss_dssp HHHHHHHHHHHHTTTTSCSSHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhcc
Confidence 99999999999999999875 4689999999999995
No 16
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.8e-36 Score=250.28 Aligned_cols=162 Identities=28% Similarity=0.461 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 042175 5 NVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNY 83 (170)
Q Consensus 5 ~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~ 83 (170)
..+++...++++.+++++ .+|+.||++|+.+..+ ..++++|.+|+++|||+||++||++|++++|++++..+.+.+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~ 206 (342)
T 1wy0_A 129 EIPPEKKARVLEVIVKAS--NELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSW 206 (342)
T ss_dssp CSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356777889999999999 9999999999999866 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHH----------------------------------
Q 042175 84 GKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGID---------------------------------- 128 (170)
Q Consensus 84 g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e---------------------------------- 128 (170)
|.++|+||||+||++|+++++ .+||+.++|+++||+|||++++++
T Consensus 207 g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~ 286 (342)
T 1wy0_A 207 GRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSD 286 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHH
Confidence 999999999999999999998 999999999999999999999764
Q ss_pred ---------------HHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 129 ---------------ESKNYAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 129 ---------------~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
++++.+++|.++|++.|+.+|++ .++.|.++++++.+|.+
T Consensus 287 ~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 287 VMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSKARMDLELLAKFIVEREY 342 (342)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCHHHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccC
Confidence 67889999999999999999864 36889999999999963
No 17
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=1.4e-35 Score=249.30 Aligned_cols=155 Identities=22% Similarity=0.323 Sum_probs=144.8
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++++ .+|+.||++|+.+..+ .+++++|.+|+.+|||+||++||++|++++|++++..+.+.+||.++|+|
T Consensus 152 ~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 229 (348)
T 3apz_A 152 TEVVALLATAV--EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLA 229 (348)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence 46888999998 9999999999988653 38999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH---------------------------------HHHHHHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV---------------------------------GIDESKNYAKE 136 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~---------------------------------~~e~a~~~~~~ 136 (170)
|||+||++|+++++ .+||+.++|+++||+|||+++ |++++++.+++
T Consensus 230 FQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~ 309 (348)
T 3apz_A 230 FQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAME 309 (348)
T ss_dssp HHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 99999999999998 999999999999999999998 68999999999
Q ss_pred HHHHHHHHhhcCCCCC-------hHHHHHHHHHHHhccc
Q 042175 137 LLAKAKQELAYFDPAK-------AAPLDHLVNFMVSFDN 168 (170)
Q Consensus 137 ~~~~a~~~L~~l~~~~-------~~~L~~l~~~~~~r~~ 168 (170)
|.++|++.|+.||.+. ++.|.+|++++.+|.+
T Consensus 310 ~~~~A~~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 310 HANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHhCcC
Confidence 9999999999998753 6889999999999964
No 18
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.8e-35 Score=248.01 Aligned_cols=155 Identities=23% Similarity=0.383 Sum_probs=136.3
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCCC-CCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKD-VSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~-~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++++ .+|+.||++|+.+..+. +++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+|
T Consensus 138 ~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 215 (341)
T 3mzv_A 138 MRVMEILANAS--AVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIA 215 (341)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57888999999 99999999999997654 8999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH--------------------------------------HHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG--------------------------------------IDESK 131 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~--------------------------------------~e~a~ 131 (170)
|||+||++|+++++ ..||+.++|+++||+|||++++ +++++
T Consensus 216 FQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~ 295 (341)
T 3mzv_A 216 FQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATR 295 (341)
T ss_dssp HHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999998 9999999999999999999983 57899
Q ss_pred HHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 132 NYAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 132 ~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
+.+++|.++|++.|+.||++ .++.|.+|++|+++|.+
T Consensus 296 ~~a~~~~~~A~~~L~~lp~~~~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 296 LAAIGWTDTARKALAKLPDHPLRQMLDDLADYVVERVR 333 (341)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999874 46899999999999965
No 19
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-35 Score=244.77 Aligned_cols=154 Identities=25% Similarity=0.335 Sum_probs=137.4
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCCC-CCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKD-VSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~-~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++++ .+|+.||.+|+.+..+. +++++|.+|+.+|||+||++||++|++++|++++..+.+++||.++|+|
T Consensus 132 ~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 209 (334)
T 3rmg_A 132 YEIIRLVSSLG--QKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGIC 209 (334)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46788899998 99999999999997654 8999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH--------------------------------------HHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV--------------------------------------GIDESK 131 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~--------------------------------------~~e~a~ 131 (170)
|||+||++|+++ + ..||+.++|+++||+|||+++ |+++++
T Consensus 210 FQi~DD~ld~~~-~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~ 288 (334)
T 3rmg_A 210 FQIKDDIFDYFD-SKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYAC 288 (334)
T ss_dssp HHHHHHHHTTSC-C------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhccCCC-hhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHH
Confidence 999999999994 6 899999999999999999987 467889
Q ss_pred HHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 132 NYAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 132 ~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
+.+++|.++|++.|+.||++ .++.|.+|++|+++|.+
T Consensus 289 ~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 289 RTIEQYKKKAFDLLAALPDSNICLALRTYLDYVVAREK 326 (334)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccc
Confidence 99999999999999999864 36899999999999965
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.6e-35 Score=248.37 Aligned_cols=154 Identities=21% Similarity=0.370 Sum_probs=138.0
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQ 92 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQ 92 (170)
++++.+++++ .+|+.||++|+.+..+.+++++|.+|++.|||+||++||++|++++|++++..+.+++||.+||+|||
T Consensus 160 ~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQ 237 (360)
T 3lmd_A 160 DTVAHFAETF--GELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQ 237 (360)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788999998 89999999999998656889999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH-------------------------------------HHHHHHHH
Q 042175 93 LWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG-------------------------------------IDESKNYA 134 (170)
Q Consensus 93 i~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~-------------------------------------~e~a~~~~ 134 (170)
|+||++|+++++ ..||+.++|+++||+|||++++ ++++++.+
T Consensus 238 I~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a 317 (360)
T 3lmd_A 238 IVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEV 317 (360)
T ss_dssp HHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 999999999998 9999999999999999999983 68899999
Q ss_pred HHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 135 KELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 135 ~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
++|.++|++.|+.||++ .++.|.+|++|+++|..
T Consensus 318 ~~~~~~A~~~L~~lp~~~~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 318 YRYMDIANAELDRLPDSTVKEALRNLATFTVKRVG 352 (360)
T ss_dssp HHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcc
Confidence 99999999999999874 36899999999999965
No 21
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=6.7e-35 Score=243.96 Aligned_cols=154 Identities=21% Similarity=0.374 Sum_probs=142.6
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAY 91 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~af 91 (170)
++++.+++++ .+|+.||.+|+.+..+ .+++++|.+++++|||+||++||++|++++|++++..+.+++||.++|+||
T Consensus 143 ~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aF 220 (334)
T 3pko_A 143 SLIQNHIDAM--HRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAY 220 (334)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5678888888 9999999999998754 489999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHH-----------------------------------HHHHHHHH
Q 042175 92 QLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGI-----------------------------------DESKNYAK 135 (170)
Q Consensus 92 Qi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~-----------------------------------e~a~~~~~ 135 (170)
||+||++|+++++ ..||+.++|+++||+|||+++++ +++++.++
T Consensus 221 Qi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~ 300 (334)
T 3pko_A 221 QMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQ 300 (334)
T ss_dssp HHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 9999999999998 99999999999999999999865 47999999
Q ss_pred HHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 136 ELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 136 ~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
+|.++|++.|+.||++ .++.|.+|++++.+|.+
T Consensus 301 ~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 301 DYTDRALTLIQQLPVGSAQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp HHHHHHHHHHTTSCSSHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhccC
Confidence 9999999999999874 46899999999999964
No 22
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=7.3e-35 Score=245.68 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHhhchhhhhhhhHHhhhcC-----------CC--CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHH
Q 042175 10 RLLRAIVEMSSAIGSEGLAAGQIMDISSE-----------GK--DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEE 76 (170)
Q Consensus 10 ~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~-----------~~--~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~ 76 (170)
...++++.+++++ ..|+.||.+|+.+. .+ .+++++|.+|+.+|||+||++||++|++++|++++.
T Consensus 129 ~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~ 206 (358)
T 4dhd_A 129 KPTLFAKEVAEVI--KAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGL 206 (358)
T ss_dssp SHHHHHHHHHHHH--HHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHH
T ss_pred cHHHHHHHHHHHH--HHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHH
Confidence 3568899999999 99999999999986 33 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCC-chHHHHHH---------------------------
Q 042175 77 IERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKA-TYPKLVGI--------------------------- 127 (170)
Q Consensus 77 ~~~l~~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~-t~~~l~~~--------------------------- 127 (170)
.+.+.+||.+||+||||+||++|+++++ .+||+.++|+++||+ |||+++++
T Consensus 207 ~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~ 286 (358)
T 4dhd_A 207 AEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVRE 286 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999998 999999999999999 99999854
Q ss_pred -----------HHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhccc
Q 042175 128 -----------DESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 128 -----------e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~~~r~~ 168 (170)
+++++.+++|.++|++.|+.||++. .|.+|++|+++|.+
T Consensus 287 i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~--~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 287 AVALLDSVGAREEALRLAARYREEAERHLAKIPNNG--TLKELLDFIVAREY 336 (358)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH--HHHHHHHHHTTTTT
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHhccc
Confidence 4588999999999999999998633 99999999999976
No 23
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.4e-34 Score=243.43 Aligned_cols=156 Identities=24% Similarity=0.361 Sum_probs=142.0
Q ss_pred HHHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 042175 11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGM 89 (170)
Q Consensus 11 ~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~ 89 (170)
..++++.+++++ ..|+.||++|+.+..+ .+++++|.+|+..|||+||++||++|++++|++++..+.+++||.+||+
T Consensus 141 ~~~~~~~~~~~~--~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~ 218 (352)
T 3nf2_A 141 AGRATRRLTKAS--RSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 468899999999 9999999999999866 4899999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH------------------------------------------
Q 042175 90 AYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG------------------------------------------ 126 (170)
Q Consensus 90 afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~------------------------------------------ 126 (170)
||||+||++|+++++ ..||+.++|+++||+|||++++
T Consensus 219 aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~ 298 (352)
T 3nf2_A 219 AFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEA 298 (352)
T ss_dssp HHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHC
Confidence 999999999999998 9999999999999999998872
Q ss_pred --HHHHHHHHHHHHHHHHHHhhcCCC-C-ChHHHHHHHHHHHhccc
Q 042175 127 --IDESKNYAKELLAKAKQELAYFDP-A-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 127 --~e~a~~~~~~~~~~a~~~L~~l~~-~-~~~~L~~l~~~~~~r~~ 168 (170)
++++++.+++|.++|++.|+.+|+ + .++.|.+|++|+++|..
T Consensus 299 g~~~~a~~~a~~~~~~A~~~L~~lp~~~~~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 299 GGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVRKR 344 (352)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHCC---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhccc
Confidence 356777899999999999999986 3 46899999999999964
No 24
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-35 Score=241.37 Aligned_cols=147 Identities=20% Similarity=0.302 Sum_probs=127.4
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCC--CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGK--DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~--~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
++++.+++++ .+|+.||.+|+.+..+ .+++++|.+|+++|||+||++||++|++++|++++ .+++||.++|+|
T Consensus 134 ~~~~~l~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~a 208 (284)
T 2ftz_A 134 XIFEEFSETA--YXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVA 208 (284)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHH
Confidence 7889999999 9999999999998755 58999999999999999999999999999998876 899999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH-HHHHHHHHHhc
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAP-LDHLVNFMVSF 166 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~-L~~l~~~~~~r 166 (170)
|||+||++|+++++ ..||+.++|++ |+|||+++|++++++.+++|.++|++.|+.||++.++. |.+|++|+.+|
T Consensus 209 FQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 209 FQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHHHCCCC-------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcC
Confidence 99999999999988 99999999999 99999999999999999999999999999998534677 99999999987
No 25
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=3.2e-34 Score=239.08 Aligned_cols=155 Identities=21% Similarity=0.316 Sum_probs=142.2
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++++ .+|+.||.+|+.+..+ .+++++|.+|+.+|||+||++||++|++++|++++..+.+.+||.++|+|
T Consensus 129 ~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 206 (325)
T 3aqb_B 129 SKFHQIFSKTI--LEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMS 206 (325)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57888999999 9999999999999765 48999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHHH---------------------------------------H
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGIDE---------------------------------------S 130 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e~---------------------------------------a 130 (170)
|||+||++|+++++ ..||+.++|+++||+|||++++++. +
T Consensus 207 fQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 286 (325)
T 3aqb_B 207 YQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPA 286 (325)
T ss_dssp HHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 8999999999999999999986543 3
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 131 KNYAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 131 ~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
++.+++|.++|++.|+.+|++ .++.|..+++++.+|.+
T Consensus 287 ~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 287 ELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 577889999999999999875 35789999999999964
No 26
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=1.4e-34 Score=245.53 Aligned_cols=162 Identities=24% Similarity=0.349 Sum_probs=147.0
Q ss_pred CCCCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCC-CCHHHHHHHHHccHHHH-HHHHHHHHHHhcCCCHHHHHHHH
Q 042175 4 KNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKD-VSLSELNFIHRHKSEKF-VEASIVSGVIIGGGNEEEIERMR 81 (170)
Q Consensus 4 ~~~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~-~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag~~~~~~~~l~ 81 (170)
.+++++...++++.++.+. .+|+.||++|+.+..+. +++++|.+|+++|||+| |++||++|++++|++++..+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~ 243 (380)
T 3lk5_A 166 SGLSAEALARTRDAWRGMR--TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALL 243 (380)
T ss_dssp SCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567888889999999887 89999999999987544 79999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH-----------------------------------
Q 042175 82 NYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV----------------------------------- 125 (170)
Q Consensus 82 ~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~----------------------------------- 125 (170)
+||.+||+||||+||++|+++++ .+|||.++|+++||+|||+++
T Consensus 244 ~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~l 323 (380)
T 3lk5_A 244 HYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEH 323 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999999998 999999999999999999987
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhcCCC-C-ChHHHHHHHHHHHhcc
Q 042175 126 -----GIDESKNYAKELLAKAKQELAYFDP-A-KAAPLDHLVNFMVSFD 167 (170)
Q Consensus 126 -----~~e~a~~~~~~~~~~a~~~L~~l~~-~-~~~~L~~l~~~~~~r~ 167 (170)
+++++++.+++|.++|++.|+.+|. + .++.|.+|++++..|+
T Consensus 324 i~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 324 IRATGAEEEVEQRISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERR 372 (380)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhh
Confidence 3567888999999999999999984 2 4689999999999885
No 27
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=5.2e-34 Score=234.89 Aligned_cols=150 Identities=22% Similarity=0.336 Sum_probs=126.4
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQ 92 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQ 92 (170)
++++.+++++ .+|+.||.+|+.+..+.+++++|.++++.|||+||++||++|++++|++++..+.+++||.++|+|||
T Consensus 127 ~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQ 204 (295)
T 3ipi_A 127 KVIQDFGKAG--MDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQ 204 (295)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788889998 88999999999987666888999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCCCCCccchHhhhCCCchHHHHH--------HHHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHH
Q 042175 93 LWNDIVDVIGSPETKETTGRDMLRGKATYPKLVG--------IDESKNYAKELLAKAKQELAYFDPA-KAAPLDHLVNFM 163 (170)
Q Consensus 93 i~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~--------~e~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~ 163 (170)
|+||++|+++++ .++|+.+||+|||++++ +++|++.+++|.++|++.|+.||++ .++.|.+|++|+
T Consensus 205 I~DDilD~~~~~-----~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~ 279 (295)
T 3ipi_A 205 IVDDILEFLEVV-----EGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFRECPARDKLFQITDYI 279 (295)
T ss_dssp HHHHHHHHHHHH-----HC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCc-----cCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999998765 24578999999999998 9999999999999999999999874 468999999999
Q ss_pred HhcccC
Q 042175 164 VSFDNV 169 (170)
Q Consensus 164 ~~r~~~ 169 (170)
..|.-.
T Consensus 280 ~~~~~~ 285 (295)
T 3ipi_A 280 TVDMLE 285 (295)
T ss_dssp TGGGGC
T ss_pred HHhCcc
Confidence 998654
No 28
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=2.6e-33 Score=230.65 Aligned_cols=150 Identities=50% Similarity=0.859 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCC---CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 042175 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK---DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRN 82 (170)
Q Consensus 6 ~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~---~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~ 82 (170)
+++....+++..+++++|..+|+.||.+|+.+... .+++++|..|+++|||+||++||++|++++|++++..+.+++
T Consensus 141 ~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~ 220 (293)
T 2j1p_A 141 VSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRK 220 (293)
T ss_dssp SCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56778899999999998888999999999998764 367899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 042175 83 YGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNF 162 (170)
Q Consensus 83 ~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~ 162 (170)
||.++|+||||+||++|+++++ |.|+|+++|++++++.+++|.++|++.|+.||++.++.|.++++|
T Consensus 221 ~g~~lG~aFQI~DDiLD~~~~~-------------K~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~ 287 (293)
T 2j1p_A 221 FARCIGLLFQVVDDILDVTKSS-------------KLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANY 287 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCc-------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999998752 889999999999999999999999999999986567899999999
Q ss_pred HHhccc
Q 042175 163 MVSFDN 168 (170)
Q Consensus 163 ~~~r~~ 168 (170)
+.+|.+
T Consensus 288 ~~~R~~ 293 (293)
T 2j1p_A 288 IANRQN 293 (293)
T ss_dssp HHHCCC
T ss_pred HHhhcC
Confidence 999964
No 29
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=2.3e-33 Score=232.92 Aligned_cols=147 Identities=22% Similarity=0.250 Sum_probs=134.7
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCC-CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
.++++.+++++ .+|+.||.+|+.+..+ .+++++|.+|+++|||+||++||++|++++|++ .+.+++||.++|+|
T Consensus 121 ~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~a 195 (315)
T 3tc1_A 121 ELIAQALSNAV--LRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMA 195 (315)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHH
Confidence 46788999998 9999999999999765 489999999999999999999999999999998 67899999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH------------------------------------HHHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV------------------------------------GIDESKNY 133 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~------------------------------------~~e~a~~~ 133 (170)
|||+||++|+++++ ..||+.++|+++||+|||+++ +++++++.
T Consensus 196 FQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~ 275 (315)
T 3tc1_A 196 FQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKT 275 (315)
T ss_dssp HHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHH
Confidence 99999999999998 999999999999999999987 46889999
Q ss_pred HHHHHHHHHHHhhcCCCC-ChHHHHHHHHHH
Q 042175 134 AKELLAKAKQELAYFDPA-KAAPLDHLVNFM 163 (170)
Q Consensus 134 ~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~ 163 (170)
+++|.++|++.|+.||++ .++.|.++++|+
T Consensus 276 ~~~~~~~A~~~L~~lp~s~~r~~L~~l~~~~ 306 (315)
T 3tc1_A 276 AQVYSKKALEAIKGENNLILEKLAQDVISRT 306 (315)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999874 357888888765
No 30
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=6.3e-33 Score=231.64 Aligned_cols=153 Identities=21% Similarity=0.249 Sum_probs=136.8
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhc-CCC--CCCHHHHHHHHHccHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISS-EGK--DVSLSELNFIHRHKSEKF-VEASIVSGVIIGGGNEEEIERMRNYGKCV 87 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~-~~~--~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag~~~~~~~~l~~~g~~l 87 (170)
.++++.+++++ .+|+.||++|+.+ ..+ .+++++|.+|+.+|||+| |++||++|++++|++++.. +.+||.++
T Consensus 129 ~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~l 204 (330)
T 1wmw_A 129 PEVLLEFHEVV--RRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRL 204 (330)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHH
Confidence 37888999999 9999999999998 655 489999999999999999 9999999999999987766 99999999
Q ss_pred HHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHH----------------------------------------
Q 042175 88 GMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGI---------------------------------------- 127 (170)
Q Consensus 88 G~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~---------------------------------------- 127 (170)
|+||||+||++|+++++..||+.++|+++||+|||+++++
T Consensus 205 G~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 284 (330)
T 1wmw_A 205 GTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRAL 284 (330)
T ss_dssp HHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHccCcccCCcccCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChH
Confidence 9999999999999987558999999999999999998843
Q ss_pred HHHHHHHHHHHHHHHHHhh----cCCCC-ChHHHHHHHHHHHhccc
Q 042175 128 DESKNYAKELLAKAKQELA----YFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 128 e~a~~~~~~~~~~a~~~L~----~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
+++++.+++|.++|.+.|+ .||++ .++.|..|++++.+|.+
T Consensus 285 ~~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 285 AWAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALVERRA 330 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhccC
Confidence 4566789999999999999 99864 35789999999999964
No 31
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=2.6e-33 Score=236.57 Aligned_cols=156 Identities=13% Similarity=0.204 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhhchhhhhhhhHHhhhcC-----------C--C----CCCHHHHHHHHHccHHHH-HHHHHHHHHHhcC
Q 042175 10 RLLRAIVEMSSAIGSEGLAAGQIMDISSE-----------G--K----DVSLSELNFIHRHKSEKF-VEASIVSGVIIGG 71 (170)
Q Consensus 10 ~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~-----------~--~----~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag 71 (170)
...++++.+++++ ..++.||++|+.+. . + .+++++|.+|+.+|||+| |++||++|++++|
T Consensus 148 ~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag 225 (362)
T 1yhl_A 148 FLKDLLCLFQKVD--YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE 225 (362)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC
Confidence 4678999999999 99999999999887 3 2 378999999999999999 9999999999999
Q ss_pred -CCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH-----------------------
Q 042175 72 -GNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG----------------------- 126 (170)
Q Consensus 72 -~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~----------------------- 126 (170)
++++..+.+.+||.+||+||||+||++|+++++ .+|| .++|+++||+|||++++
T Consensus 226 ~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~ 304 (362)
T 1yhl_A 226 AAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAK 304 (362)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC-ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHH
Confidence 888888999999999999999999999999998 9999 89999999999999883
Q ss_pred -------------HHHHHHHHHHHHHHHHHHhhcCCCCC-h--HHHHHHHHHHHhccc
Q 042175 127 -------------IDESKNYAKELLAKAKQELAYFDPAK-A--APLDHLVNFMVSFDN 168 (170)
Q Consensus 127 -------------~e~a~~~~~~~~~~a~~~L~~l~~~~-~--~~L~~l~~~~~~r~~ 168 (170)
++++++.+++|.++|++.|+.||++. + +.|..|++++.+|.+
T Consensus 305 ~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 305 VAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhccC
Confidence 45678889999999999999998753 6 789999999999964
No 32
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.2e-32 Score=233.42 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhhchhhhhhhhHHhhhcCCC------CCCHHHHHHHHHccHHHH-HHHHHHHHHHhcC-CCHHHHHHHH
Q 042175 10 RLLRAIVEMSSAIGSEGLAAGQIMDISSEGK------DVSLSELNFIHRHKSEKF-VEASIVSGVIIGG-GNEEEIERMR 81 (170)
Q Consensus 10 ~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~------~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag-~~~~~~~~l~ 81 (170)
...++++.+++++ ..++.||++|+.+... .+++++|.+|+.+|||+| |++||++|++++| ++++..+.+.
T Consensus 173 ~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~ 250 (374)
T 2qis_A 173 YYLNLIELFLQSS--YQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAK 250 (374)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHH--HHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3567889999999 9999999999998653 268999999999999999 9999999999999 9999999999
Q ss_pred HHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHH--------------------------------
Q 042175 82 NYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGID-------------------------------- 128 (170)
Q Consensus 82 ~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e-------------------------------- 128 (170)
+||.++|+||||+||++|+++++ .+|| .++|+++||+|||++++++
T Consensus 251 ~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~ 329 (374)
T 2qis_A 251 KILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEEL 329 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999998 9999 9999999999999998532
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 129 ----ESKNYAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 129 ----~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
++++.+++|.++|++.|+.||++ .++.|..|++++.+|.+
T Consensus 330 g~~~~~~~~~~~~~~~a~~~L~~lp~~~~k~~L~~l~~~i~~R~k 374 (374)
T 2qis_A 330 DLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRRK 374 (374)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHcCcC
Confidence 34566889999999999999864 57899999999999964
No 33
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.5e-32 Score=232.26 Aligned_cols=156 Identities=14% Similarity=0.190 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHhhchhhhhhhhHHhhhcCCC------CCCHHHHHHHHHccHHHH-HHHHHHHHHHhcC-CCHHHHHHHH
Q 042175 10 RLLRAIVEMSSAIGSEGLAAGQIMDISSEGK------DVSLSELNFIHRHKSEKF-VEASIVSGVIIGG-GNEEEIERMR 81 (170)
Q Consensus 10 ~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~------~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag-~~~~~~~~l~ 81 (170)
...++++.+++++ ..++.||++|+.+... .+++++|.+|+.+|||+| |++||++|++++| ++++..+.++
T Consensus 166 ~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~ 243 (367)
T 1uby_A 166 YYVHLLELFLQTA--YQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAK 243 (367)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHH--HHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3567889999998 9999999999988642 478999999999999999 9999999999999 8999999999
Q ss_pred HHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHHH--------------------------------
Q 042175 82 NYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGID-------------------------------- 128 (170)
Q Consensus 82 ~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~e-------------------------------- 128 (170)
+||.++|+||||+||++|+++++ .+|| .++|+++||+|||++++++
T Consensus 244 ~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~ 322 (367)
T 1uby_A 244 AILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAV 322 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999 9999 9999999999999998643
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhccc
Q 042175 129 ----ESKNYAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSFDN 168 (170)
Q Consensus 129 ----~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r~~ 168 (170)
++++.+++|.++|++.|+.+|++ .++.|..+++++.+|.+
T Consensus 323 g~~~~~~~~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~R~~ 367 (367)
T 1uby_A 323 GMRAAFQQYEESSYRRLQELIEKHSNRLPKEIFLGLAQKIYKRQK 367 (367)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCSSSCTHHHHHHHHHHCCCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 23356889999999999999864 57899999999999964
No 34
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.98 E-value=2.9e-32 Score=225.11 Aligned_cols=149 Identities=17% Similarity=0.214 Sum_probs=128.4
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCC--CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGK--DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~--~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 90 (170)
++++.+++++ ..|+.||++|+.+..+ .+++++|.+|+++|||+||++||++|+++++.++ .+.+||.++|+|
T Consensus 111 ~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~a 184 (301)
T 2q80_A 111 DAVKLFTRQL--LELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLF 184 (301)
T ss_dssp THHHHHHHHH--HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHH
Confidence 4566788888 8999999999988533 4789999999999999999999999999999873 589999999999
Q ss_pred HhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH------------------------------------HHHHHHH
Q 042175 91 YQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG------------------------------------IDESKNY 133 (170)
Q Consensus 91 fQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~------------------------------------~e~a~~~ 133 (170)
|||+||++|+++++ ..||+.++|+++||+|||++++ ++++++.
T Consensus 185 FQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~ 264 (301)
T 2q80_A 185 FQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNT 264 (301)
T ss_dssp HHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHH
Confidence 99999999999998 8999999999999999999874 3578899
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcccC
Q 042175 134 AKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFDNV 169 (170)
Q Consensus 134 ~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~~~r~~~ 169 (170)
+++|.++|.+.|+.+|+ .+.|..+++++..|.++
T Consensus 265 ~~~~~~~A~~~L~~l~~--~~~L~~l~~~l~~~~~~ 298 (301)
T 2q80_A 265 LKELEAKAYKQIDARGG--NPELVALVKHLSKMFKE 298 (301)
T ss_dssp HHHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcc
Confidence 99999999999999986 34599999999988654
No 35
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=99.98 E-value=3.1e-32 Score=228.26 Aligned_cols=157 Identities=13% Similarity=0.178 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCC----CCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 042175 6 VSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK----DVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMR 81 (170)
Q Consensus 6 ~~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~----~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~ 81 (170)
.++....++++.+++++ ..|+.||++|+.+..+ .+++++|.+|+++|||+||++||++|++++|+++ ..+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~ 200 (340)
T 2e8v_A 124 TKEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLV 200 (340)
T ss_dssp CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CH
T ss_pred CchhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHH
Confidence 45566778999999998 9999999999987532 3799999999999999999999999999999987 578999
Q ss_pred HHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHHH---------------------------------
Q 042175 82 NYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVGI--------------------------------- 127 (170)
Q Consensus 82 ~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~~--------------------------------- 127 (170)
+||.++|+||||+||++|+++++ ..||+.++|+++||+|||+++++
T Consensus 201 ~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 280 (340)
T 2e8v_A 201 PFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLI 280 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999998 89999999999999999998743
Q ss_pred ----------HHHHHHHHHHHHHHHHH-----hhcCCCC------ChHHHHHHHHHHHh
Q 042175 128 ----------DESKNYAKELLAKAKQE-----LAYFDPA------KAAPLDHLVNFMVS 165 (170)
Q Consensus 128 ----------e~a~~~~~~~~~~a~~~-----L~~l~~~------~~~~L~~l~~~~~~ 165 (170)
+++++.+++|.++|++. |+.+|++ .++.|..+++++.+
T Consensus 281 ~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~~~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 281 QILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIIDHLSE 339 (340)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHTC--------------------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCccccHHHHHHHHHHHHHHHh
Confidence 34555677777777777 7777643 34577777777653
No 36
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.97 E-value=6.2e-32 Score=230.28 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhhchhhhhhhhHHhhh-c--------------------CCC----CCCHHHHHHHHHccHHHH-HHHHH
Q 042175 10 RLLRAIVEMSSAIGSEGLAAGQIMDIS-S--------------------EGK----DVSLSELNFIHRHKSEKF-VEASI 63 (170)
Q Consensus 10 ~~~~~i~~l~~~~g~~~l~~GQ~~dl~-~--------------------~~~----~~~~~~~~~i~~~KTg~L-~~~~~ 63 (170)
...++++.+++++ .+++.||.+|+. | ++. .+++++|.+|+.+|||+| |.+||
T Consensus 175 ~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~ 252 (395)
T 2ihi_A 175 CYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPI 252 (395)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHH--HHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHH
Confidence 3578899999999 999999999992 2 222 478999999999999999 99999
Q ss_pred HHHHHhcCCCHHH--HHHHHHHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH---------------
Q 042175 64 VSGVIIGGGNEEE--IERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV--------------- 125 (170)
Q Consensus 64 ~~ga~lag~~~~~--~~~l~~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~--------------- 125 (170)
++|++++|++++. .+.+..||.+||+||||+||++|+++++ .+|| .++|+++||+|||+++
T Consensus 253 ~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~ 331 (395)
T 2ihi_A 253 VCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVK 331 (395)
T ss_dssp HHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHH
Confidence 9999999998887 8999999999999999999999999998 9999 9999999999999998
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhc
Q 042175 126 ---------------------GIDESKNYAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSF 166 (170)
Q Consensus 126 ---------------------~~e~a~~~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r 166 (170)
+++++++.++++.++|++.|+.+|++ .++.|..|++++.+|
T Consensus 332 ~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~~r~~L~~l~~~i~~R 394 (395)
T 2ihi_A 332 NYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTG 394 (395)
T ss_dssp HCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHC----
T ss_pred HhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcc
Confidence 46788999999999999999999874 468999999999887
No 37
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.97 E-value=3.7e-32 Score=231.45 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=140.1
Q ss_pred HHHHHHHHHHhhchhhhhhhhHHhhhcC----------C-------CCCCHHHHHHHHHccHHHH-HHHHHHHHHHhcCC
Q 042175 11 LLRAIVEMSSAIGSEGLAAGQIMDISSE----------G-------KDVSLSELNFIHRHKSEKF-VEASIVSGVIIGGG 72 (170)
Q Consensus 11 ~~~~i~~l~~~~g~~~l~~GQ~~dl~~~----------~-------~~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag~ 72 (170)
..++++.+++++ ..++.||.+|+.+. . ..+++++|.+|+++|||+| |++||++|++++|+
T Consensus 177 ~~~~~~~~~~~~--~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga 254 (390)
T 3dyh_A 177 LQDLLCRFNRVD--YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEA 254 (390)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCC
Confidence 457888899998 89999999999872 1 1378999999999999999 99999999999999
Q ss_pred CHHH-HHHHHHHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHH-------------------------
Q 042175 73 NEEE-IERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLV------------------------- 125 (170)
Q Consensus 73 ~~~~-~~~l~~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~------------------------- 125 (170)
+++. .+.+++||.+||+||||+||++|+++++ .+|| .++|+++||+|||+++
T Consensus 255 ~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v 333 (390)
T 3dyh_A 255 LPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKV 333 (390)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHH
Confidence 8775 7899999999999999999999999998 9999 9999999999999987
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHhhcCCCCC---hHHHHHHHHHHHhccc
Q 042175 126 -----------GIDESKNYAKELLAKAKQELAYFDPAK---AAPLDHLVNFMVSFDN 168 (170)
Q Consensus 126 -----------~~e~a~~~~~~~~~~a~~~L~~l~~~~---~~~L~~l~~~~~~r~~ 168 (170)
++++++++.+++.++|++.|++||++. ++.|..|++++.+|.+
T Consensus 334 ~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 334 ATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHcCCC
Confidence 467888999999999999999998654 5789999999999975
No 38
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=99.97 E-value=3.3e-31 Score=218.58 Aligned_cols=134 Identities=19% Similarity=0.284 Sum_probs=120.3
Q ss_pred HHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 042175 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAY 91 (170)
Q Consensus 12 ~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~af 91 (170)
.++++.+++++ .+|+.||++|+.+..+.+++++|.+|+.+|||+||++||++|++++|+++ +.+++||.++|+||
T Consensus 126 ~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aF 200 (299)
T 1v4e_A 126 NKLRRAFLNVI--GKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIY 200 (299)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHH
Confidence 47888999999 99999999999987655899999999999999999999999999999877 89999999999999
Q ss_pred hHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHH----------------------------HHHHHHHHHHHHHHHH
Q 042175 92 QLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGI----------------------------DESKNYAKELLAKAKQ 143 (170)
Q Consensus 92 Qi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~----------------------------e~a~~~~~~~~~~a~~ 143 (170)
||+||++|++++...||+.++|+++||+|||+++++ +++++.++.|.++|.+
T Consensus 201 Qi~DD~lD~~~d~~~GK~~g~Dl~egK~T~p~l~al~~~~~l~~~l~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~ 280 (299)
T 1v4e_A 201 QMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFENRDWSGLMSFMREKGILKECEETLKVLVKNVII 280 (299)
T ss_dssp HHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHHTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCccccCCCcchHhhCCCchHHHHHHHHhChHHHHHHhHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 999999999987668999999999999999998854 5666777777788888
Q ss_pred HhhcCCC
Q 042175 144 ELAYFDP 150 (170)
Q Consensus 144 ~L~~l~~ 150 (170)
.|+.||+
T Consensus 281 ~L~~l~~ 287 (299)
T 1v4e_A 281 ENSWLRD 287 (299)
T ss_dssp HCGGGCC
T ss_pred HHHhhhh
Confidence 8777765
No 39
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.97 E-value=2.7e-30 Score=220.34 Aligned_cols=152 Identities=18% Similarity=0.296 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhhchhhhhhhhHHhhhcCCC-------------------------CCCHHHHHHHHHccHHHH-HHHHH
Q 042175 10 RLLRAIVEMSSAIGSEGLAAGQIMDISSEGK-------------------------DVSLSELNFIHRHKSEKF-VEASI 63 (170)
Q Consensus 10 ~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~-------------------------~~~~~~~~~i~~~KTg~L-~~~~~ 63 (170)
...++++.+++++ ..++.||.+|+.+... .+++++|.+|+.+|||+| |.+||
T Consensus 175 ~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~ 252 (395)
T 3mav_A 175 CYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPI 252 (395)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHH
Confidence 4568899999998 9999999999976421 258899999999999999 99999
Q ss_pred HHHHHhcCCC--HHHHHHHHHHHHHHHHHHhHHhhhhhccCCC-CCCCccchHhhhCCCchHHHHH--------------
Q 042175 64 VSGVIIGGGN--EEEIERMRNYGKCVGMAYQLWNDIVDVIGSP-ETKETTGRDMLRGKATYPKLVG-------------- 126 (170)
Q Consensus 64 ~~ga~lag~~--~~~~~~l~~~g~~lG~afQi~DDilD~~~~~-~~gk~~~~D~~~gk~t~~~l~~-------------- 126 (170)
.+|++++|++ +...+.+++||.+||+||||+||++|+++++ ..|| .++|+++||+|||++++
T Consensus 253 ~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~ 331 (395)
T 3mav_A 253 VCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVK 331 (395)
T ss_dssp HHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHH
Confidence 9999999875 4467899999999999999999999999999 9999 69999999999999983
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcc
Q 042175 127 ----------------------IDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMVSFD 167 (170)
Q Consensus 127 ----------------------~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~~~r~ 167 (170)
.+++++.++++.++|.+.|+.+|. +.+..+.+++.+|-
T Consensus 332 ~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~---~~l~~ll~~lle~i 391 (395)
T 3mav_A 332 NYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHH---EGIEYVLKYLLEIL 391 (395)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHC
T ss_pred HhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHH
Confidence 356788899999999999999974 45666777776664
No 40
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.97 E-value=2.3e-30 Score=218.64 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhchhhhhhhhHHhhhcCCC--CCCH-HHHHHHHHccHHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHH
Q 042175 11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGK--DVSL-SELNFIHRHKSEKF-VEASIVSGVIIGGGNEEE--IERMRNYG 84 (170)
Q Consensus 11 ~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~--~~~~-~~~~~i~~~KTg~L-~~~~~~~ga~lag~~~~~--~~~l~~~g 84 (170)
..++++.+++++ .+|+.||.+|+.+... ..+. ++|.+|+++|||+| |++||++|++++|++++. .+.+++||
T Consensus 166 ~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g 243 (368)
T 2her_A 166 VMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAIL 243 (368)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 678999999998 9999999999998752 3444 89999999999999 999999999999998887 89999999
Q ss_pred HHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHH--------------------------------HHHHHHH
Q 042175 85 KCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLV--------------------------------GIDESKN 132 (170)
Q Consensus 85 ~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~--------------------------------~~e~a~~ 132 (170)
.++|+||||+||++|++ .+|| .++|+++||+|||+++ +++++++
T Consensus 244 ~~lG~aFQI~DD~LD~~---~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~ 319 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYL---FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLE 319 (368)
T ss_dssp HHHHHHHHHHHHHHHHH---SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHH
Confidence 99999999999999999 4799 9999999999999987 3578899
Q ss_pred HHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHhc
Q 042175 133 YAKELLAKAKQELAYFDPA-KAAPLDHLVNFMVSF 166 (170)
Q Consensus 133 ~~~~~~~~a~~~L~~l~~~-~~~~L~~l~~~~~~r 166 (170)
.+++|.++|++.|+.+|.+ .++.|..|++++-++
T Consensus 320 ~~~~~~~~A~~~L~~lp~~~~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 320 YQRNALDYLIKLVKDITDDSLQKVFIHLIHQISEL 354 (368)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999874 468899999998776
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.96 E-value=6.4e-30 Score=210.02 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=128.8
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQ 92 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQ 92 (170)
++++.+++++ .+|+.||.+|+.+ +++|.+++++|||+||++||++|++++ ++++..+.+++||.++|+|||
T Consensus 135 ~~~~~~~~~~--~~~~~GQ~~dl~~------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQ 205 (289)
T 2azj_A 135 DALNTSIELW--KDTSVGALRDMYD------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQ 205 (289)
T ss_dssp HHHHHHHHHH--HHHHHHHHHTTTT------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhh------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHH
Confidence 4788899998 9999999999985 457899999999999999999999999 898889999999999999999
Q ss_pred HHhhhhhccCCCCCCCccchHhhhCCCchHHHH---HHHHH-HHHHHHHHHHHHHHhhcCCC-C-ChHHHHHHHHHHHhc
Q 042175 93 LWNDIVDVIGSPETKETTGRDMLRGKATYPKLV---GIDES-KNYAKELLAKAKQELAYFDP-A-KAAPLDHLVNFMVSF 166 (170)
Q Consensus 93 i~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~---~~e~a-~~~~~~~~~~a~~~L~~l~~-~-~~~~L~~l~~~~~~r 166 (170)
|+||++|++++ ||+ |+.+||.|||+++ |.+.+ +..+++|.++|++.|+.||+ + .++.|.++++|+.+|
T Consensus 206 i~DDilD~~~~---~K~---dl~~gk~Tlp~l~~~~g~~~a~~~~a~~~~~~A~~~L~~lp~~~~~~~~L~~l~~~~~~R 279 (289)
T 2azj_A 206 VIDDFVDYKTK---KVE---EIDGSAKQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIPFQSKYLSEIRSLPEFLANG 279 (289)
T ss_dssp HHHHHHHHTTS---CTT---TCCTTGGGGHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHTHHHHHHHH
T ss_pred HHHhhhhhcCC---CCh---hhhcCcccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 99999999985 554 8899999999999 88888 88999999999999999986 3 468999999999999
Q ss_pred cc
Q 042175 167 DN 168 (170)
Q Consensus 167 ~~ 168 (170)
..
T Consensus 280 ~~ 281 (289)
T 2azj_A 280 LL 281 (289)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 42
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.95 E-value=2.7e-28 Score=206.28 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCC---CCCHHHHHHHHHccHHHH-HHHHHHHHHHhcC--CCHHHHHHH
Q 042175 7 SPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGK---DVSLSELNFIHRHKSEKF-VEASIVSGVIIGG--GNEEEIERM 80 (170)
Q Consensus 7 ~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~---~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag--~~~~~~~~l 80 (170)
+++...++++.+++++ ..++.||.+|+.+.+. +.++++|.+|+.+|||.| |.+|+.+|++++| ++++..+.+
T Consensus 162 ~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l 239 (368)
T 2q58_A 162 GNDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLI 239 (368)
T ss_dssp CHHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTH
T ss_pred ChHHHHHHHHHHHHHH--HHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHH
Confidence 4556788999999998 9999999999987643 267889999999999999 8999999999998 466777899
Q ss_pred HHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHH--------------------------------H
Q 042175 81 RNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGI--------------------------------D 128 (170)
Q Consensus 81 ~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~--------------------------------e 128 (170)
.+||.+||+||||+||++|+++ ||+.++|+++||+|||+++++ +
T Consensus 240 ~~~g~~lG~aFQI~DDiLD~~~----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~ 315 (368)
T 2q58_A 240 EAILYKLGEFYQVHNDVSDYLF----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNSSLVKDCYNLLKINE 315 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHhhHH
Confidence 9999999999999999999975 899999999999999999842 3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-h----HHHHHHHHHHHhcc
Q 042175 129 ESKNYAKELLAKAKQELAYFDPAK-A----APLDHLVNFMVSFD 167 (170)
Q Consensus 129 ~a~~~~~~~~~~a~~~L~~l~~~~-~----~~L~~l~~~~~~r~ 167 (170)
.+.+..+++.+++.+.++.+|+.. + ..|..+++++++|+
T Consensus 316 ~~~ey~~~~~~~~~~~i~~l~~~~~k~~l~~ll~kI~~~~~~rk 359 (368)
T 2q58_A 316 HYLEYQRNALDYLIKLVKDITDDSLQKVFIHLIHQISELITNSR 359 (368)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhh
Confidence 345567788888999999997632 2 34566777777774
No 43
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.92 E-value=1.5e-24 Score=176.88 Aligned_cols=128 Identities=29% Similarity=0.425 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 042175 7 SPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKC 86 (170)
Q Consensus 7 ~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~ 86 (170)
++++.++++..+++++|..+|+.||.+|+.+..+.+++++|.+|+++|||+||++||++|++++|++++..+.+++||.+
T Consensus 131 ~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~ 210 (274)
T 3kra_B 131 DPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLY 210 (274)
T ss_dssp HHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999998767899999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 042175 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLV 160 (170)
Q Consensus 87 lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~ 160 (170)
||+||||+||.. . || +.+++.+++|.++|++.|+.||.+...+|..|+
T Consensus 211 lG~aFQI~DD~~--~-----~~-------------------~~~~~~~~~~~~~A~~~L~~~~~~~~~pl~~~~ 258 (274)
T 3kra_B 211 QGTLRGMMEMKN--S-----HQ-------------------LIDENIIGKLKELALEELGGFHGKNAELMSSLV 258 (274)
T ss_dssp HHHHHHHHHHTT--T-----SC-------------------CCCHHHHHHHHHHHHHHHTTSCSSHHHHTGGGG
T ss_pred HHHHHHHHHhhc--c-----cc-------------------HHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHH
Confidence 999999999972 1 22 235788999999999999999875557776654
No 44
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.90 E-value=2.5e-23 Score=169.57 Aligned_cols=128 Identities=28% Similarity=0.468 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 042175 7 SPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKC 86 (170)
Q Consensus 7 ~~~~~~~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~ 86 (170)
++.+.++++..+++++|..+|+.||.+|+.+. ..++.++|..|+++|||+||++||++|++++|++++..+.+++||.+
T Consensus 133 ~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~-~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~ 211 (273)
T 3qkc_B 133 NPDRILRAIIELTRVMGSEGIVEGQYHELGLN-QLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLY 211 (273)
T ss_dssp CHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCC-SSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999984 34677778788899999999999999999999999999999999999
Q ss_pred HHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 042175 87 VGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFMV 164 (170)
Q Consensus 87 lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~~~~L~~l~~~~~ 164 (170)
||+||||+||+.+- + .++++++.++|++.|..|+++...+|.++++|-.
T Consensus 212 lGlaFQI~DD~~~~-------~----------------------~~~~~~~~~~a~~~l~~~~~~~~~~l~~~~~~~~ 260 (273)
T 3qkc_B 212 VGTVQGLLGKNRSG-------F----------------------EGRIKELKELAVKELESFGGEKIELIRGVFELEH 260 (273)
T ss_dssp HHHHHHHHTTCCST-------T----------------------HHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhhhc-------h----------------------HHHHHHHHHHHHHHHHccCchhhhHHHHHHHHHH
Confidence 99999999998631 0 2778999999999999998755688998887754
No 45
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.87 E-value=1.8e-23 Score=171.02 Aligned_cols=94 Identities=22% Similarity=0.337 Sum_probs=77.3
Q ss_pred HHHHHHHHhhchhhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Q 042175 13 RAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQ 92 (170)
Q Consensus 13 ~~i~~l~~~~g~~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQ 92 (170)
++++.+++++ .+|+.||.+|+.+..+ .|+++|||+||++||++|++++|++ +..+.+++||.++|+|||
T Consensus 133 ~~~~~ls~~~--~~~~~GQ~lDl~~~~~--------~~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQ 201 (285)
T 4fp4_A 133 DVVTYLADVA--QRLSVGQALDLEGERD--------KAAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQ 201 (285)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHTTCHH--------HHHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--HHHHHhHHHHHhcccc--------chhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHH
Confidence 7889999999 8999999999998642 1899999999999999999999998 888999999999999999
Q ss_pred HHhhhhhccCCCCCCCccchHhhhC
Q 042175 93 LWNDIVDVIGSPETKETTGRDMLRG 117 (170)
Q Consensus 93 i~DDilD~~~~~~~gk~~~~D~~~g 117 (170)
|+||++|++++...||+.++|++++
T Consensus 202 I~DDiLD~~~d~~~~k~~g~DI~e~ 226 (285)
T 4fp4_A 202 YSDDYSDENVERPETKSIANEIGRY 226 (285)
T ss_dssp CC---------CHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCccccCccHHHHHHH
Confidence 9999999998776788899998775
No 46
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=96.98 E-value=0.01 Score=47.96 Aligned_cols=110 Identities=15% Similarity=0.026 Sum_probs=79.3
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~ 104 (170)
..|+.|..+|+... ...|.+++..-...-.|++..+++.+- +..+. ......+.++|.|+|+.|=+.|+
T Consensus 111 ~~li~g~~~Dl~~~-~~~t~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~---~~~~~~A~~lG~AlQltNilRDv---- 179 (293)
T 3acx_A 111 YNLIDTVYKDQHFT-MFETDAELFGYCYGVAGTVGEVLTPIL---SDHET---HQTYDVARRLGESLQLINILRDV---- 179 (293)
T ss_dssp HHHHHHHHHHTTCC-CCSSHHHHHHHHHHHTHHHHHHHHHHH---CSSCC---HHHHHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHHHHhhHHHHHHHHHHh---CCCCc---HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 67889999998743 236888888877666676666666543 33231 23678999999999999977776
Q ss_pred CCCCccchHhhhCCCchHHHH----------------------HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042175 105 ETKETTGRDMLRGKATYPKLV----------------------GIDESKNYAKELLAKAKQELAYFDPA 151 (170)
Q Consensus 105 ~~gk~~~~D~~~gk~t~~~l~----------------------~~e~a~~~~~~~~~~a~~~L~~l~~~ 151 (170)
+.|...|++-+|.-. .+..-...++.|+.+|...+..+|+.
T Consensus 180 ------~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~ 242 (293)
T 3acx_A 180 ------GEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIE 242 (293)
T ss_dssp ------HHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTT
T ss_pred ------HHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHH
Confidence 557777887777521 23445567888999999999999874
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=96.87 E-value=0.043 Score=45.40 Aligned_cols=113 Identities=12% Similarity=-0.024 Sum_probs=79.3
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~ 104 (170)
..|..|-..|+. ....|.+++..-...-.|+...+++.+-..-...++ ........+.++|.|+|+.|=+.|+
T Consensus 121 ~~m~~gm~~dl~--~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~AlQltNilRDv---- 193 (343)
T 3vj8_A 121 RRMGIGMAEFLD--KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGEDTERANSMGLFLQKTNIIRDY---- 193 (343)
T ss_dssp HHHHHHHHHGGG--CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHHCHHHHHHHHHHHHHHHHHHTH----
T ss_pred HHHHHHHHHhcc--CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhhHHHHHHHHHHHHHHHHHHHHh----
Confidence 446778888885 234688888888777777777777776554332223 2345678999999999999988876
Q ss_pred CCCCccchHhhhCCCchHHH-H---------------------HHHHHHHHHHHHHHHHHHHhhcCCC
Q 042175 105 ETKETTGRDMLRGKATYPKL-V---------------------GIDESKNYAKELLAKAKQELAYFDP 150 (170)
Q Consensus 105 ~~gk~~~~D~~~gk~t~~~l-~---------------------~~e~a~~~~~~~~~~a~~~L~~l~~ 150 (170)
+.|...|++=+|.- + .+..-...+..|+..|...+..+|+
T Consensus 194 ------~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~ 255 (343)
T 3vj8_A 194 ------LEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRN 255 (343)
T ss_dssp ------HHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred ------HHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 45666666666642 1 3455566778888889999988876
No 48
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.85 E-value=0.013 Score=47.34 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred hhhhhhhHHhhhcCCCCCCHHHHHHHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCC
Q 042175 25 EGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~ 104 (170)
..++.|..+|+.... ..|.+++..-...-.|+...+++. +++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 107 ~~li~g~~~Dl~~~~-~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv---- 174 (294)
T 4hd1_A 107 LRLIEANRRDQRKHT-YDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDI---- 174 (294)
T ss_dssp HHHHHHHHHHHHCSB-CCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH----
T ss_pred HHHHHHHHhccccCC-CCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc----
Confidence 568899999987542 368888877665555555555443 34444433 456899999999999988876
Q ss_pred CCCCccchHhhhCCCchHHH----------------------HHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042175 105 ETKETTGRDMLRGKATYPKL----------------------VGIDESKNYAKELLAKAKQELAYFDPA 151 (170)
Q Consensus 105 ~~gk~~~~D~~~gk~t~~~l----------------------~~~e~a~~~~~~~~~~a~~~L~~l~~~ 151 (170)
..|...|++=+|.- -.++.-...++.|+++|...+..+|+.
T Consensus 175 ------~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~ 237 (294)
T 4hd1_A 175 ------DRDLALGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPR 237 (294)
T ss_dssp ------HHHHHTTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHH
T ss_pred ------hhhhccCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 44555666555542 134455566788888898888888763
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=94.44 E-value=0.73 Score=38.25 Aligned_cols=112 Identities=7% Similarity=0.016 Sum_probs=67.6
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHHHHH-HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHhhhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFVEAS-IVSGVIIGGGNEEEI--ERMRNYGKCVGMAYQLWNDIVD 99 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~--~~l~~~g~~lG~afQi~DDilD 99 (170)
..++.+-..+..|. +..++.++|.++.+.-+|.-+-++ +.++.- -..+++.. ..+..+-...+...-+.|||.-
T Consensus 187 ~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S 265 (382)
T 3kb9_A 187 HTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSG-CELPDAVRKHPAYRRAALLSQEFAAWYNDLCS 265 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677776664 334899999999555444433222 222221 13345443 3567778889999999999987
Q ss_pred ccCCCCCCCccchHhhhCCC-chHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 100 VIGSPETKETTGRDMLRGKA-TYPKLV------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 100 ~~~~~~~gk~~~~D~~~gk~-t~~~l~------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
+.. ...+|.. |++.++ +.+.|.+.+.+.++.+++.+..
T Consensus 266 ~~k----------E~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~~ 310 (382)
T 3kb9_A 266 LPK----------EIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFLA 310 (382)
T ss_dssp HHH----------HHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----------HHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 743 2334543 666665 4566666666666655555443
No 50
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=94.16 E-value=1.8 Score=34.75 Aligned_cols=112 Identities=12% Similarity=-0.003 Sum_probs=66.7
Q ss_pred hhhhhhhHHhhhcCCC--CC-CHHHHHHHHHccHHHHHHHH-HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHhhhh
Q 042175 25 EGLAAGQIMDISSEGK--DV-SLSELNFIHRHKSEKFVEAS-IVSGVIIGGGNEEEI--ERMRNYGKCVGMAYQLWNDIV 98 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~~~--~~-~~~~~~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~--~~l~~~g~~lG~afQi~DDil 98 (170)
..++.+-..+..|... .+ +.++|.++.+.-.|..+-++ +.++.- ...+++.. ..+..+-...+...-+.||+.
T Consensus 144 ~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g-~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~ 222 (337)
T 1ps1_A 144 RNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGR-FEVPHRVFDSAVMSAMLQIAVDVNLLLNDIA 222 (337)
T ss_dssp HHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHT-CCCCHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcC-CCCCHHHHhChHHHHHHHHHHHHHHHHHHHh
Confidence 5566777777666533 38 99999998544444433222 222221 12344433 356678888899999999998
Q ss_pred hccCCCCCCCccchHhhhCC-CchHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 99 DVIGSPETKETTGRDMLRGK-ATYPKLV------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 99 D~~~~~~~gk~~~~D~~~gk-~t~~~l~------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
.+.. +..+|. .|.+.++ +.+.|.+.+.+.++.+++.+..
T Consensus 223 S~~k----------E~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~ 268 (337)
T 1ps1_A 223 SLEK----------EEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLL 268 (337)
T ss_dssp THHH----------HHHTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHH----------HHhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7632 334454 4666665 4667777777777666666553
No 51
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=91.75 E-value=3.9 Score=35.90 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=71.5
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHHHH-HHHHHHHhc-CCCHHHHHHH---HHHHHHHHHHHhHHhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFVEA-SIVSGVIIG-GGNEEEIERM---RNYGKCVGMAYQLWNDI 97 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~~~-~~~~ga~la-g~~~~~~~~l---~~~g~~lG~afQi~DDi 97 (170)
..++.+-..+..|. +..||.++|.+...--+|.-+-. .+.+|+ + ..+++..+.+ .++-+..+...-+.||+
T Consensus 376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI 453 (554)
T 3g4d_A 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGM--GDIVTPETFKWAASDPKIIQASTIICRFMDDV 453 (554)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTS--CTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhc--CCCCCHHHHHhccccHHHHHHHHHHHHHhccc
Confidence 55667777777774 33489999999976555554222 222221 2 1356655554 36788899999999999
Q ss_pred hhccCCCCCCCccchHhhhCCC-chHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 98 VDVIGSPETKETTGRDMLRGKA-TYPKLV------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 98 lD~~~~~~~gk~~~~D~~~gk~-t~~~l~------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
..+.... .+|.. |...+| +.|.|.+.+++.++.+++.+++
T Consensus 454 ~S~k~E~----------~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 500 (554)
T 3g4d_A 454 AEHKFKH----------RREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQ 500 (554)
T ss_dssp HHHCC----------------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhh----------ccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8875433 23433 555544 5788999999999999888874
No 52
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=90.74 E-value=7 Score=34.28 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=72.1
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHHHH-HHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHhHHhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFVEA-SIVSGVIIGG-GNEEEIERM---RNYGKCVGMAYQLWNDI 97 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~~~-~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQi~DDi 97 (170)
..++.+-..+..|. +..||.++|.....--+|.-+-. .+.+++ +. .+++..+.+ -++-+..++..-+.||+
T Consensus 374 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi 451 (555)
T 3n0f_A 374 ADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPSHIFRLCNDL 451 (555)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHHHHHHHhccc
Confidence 45566666666664 33489999999976555543222 222222 32 356655543 35778889999999999
Q ss_pred hhccCCCCCCCccchHhhhCCC-chHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 98 VDVIGSPETKETTGRDMLRGKA-TYPKLV------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 98 lD~~~~~~~gk~~~~D~~~gk~-t~~~l~------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
..+.. ...+|.. |...+| +.|.|.+.+++.++.+++.+++
T Consensus 452 ~S~~~----------E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 498 (555)
T 3n0f_A 452 ASASA----------EIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNK 498 (555)
T ss_dssp HHHHH----------HHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhh----------hhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 87642 2334544 555554 5788999999999999888764
No 53
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=90.64 E-value=4.7 Score=35.35 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=73.1
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHHHHHHHHHHHhc-C-CCHHHHHHH---HHHHHHHHHHHhHHhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFVEASIVSGVIIG-G-GNEEEIERM---RNYGKCVGMAYQLWNDI 97 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~la-g-~~~~~~~~l---~~~g~~lG~afQi~DDi 97 (170)
..++.+-..+..|. +..||.++|.+...--+|.-+-.+.. .++ . .+++..+.+ -++-+..+...-+.||+
T Consensus 372 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI 448 (550)
T 3m00_A 372 KEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEASVIICRVIDDT 448 (550)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHHHhhhheeeccc
Confidence 44566666666664 33489999999976555554222221 222 2 456655543 35778889999999999
Q ss_pred hhccCCCCCCCccchHhhhCCC-chHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 98 VDVIGSPETKETTGRDMLRGKA-TYPKLV------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 98 lD~~~~~~~gk~~~~D~~~gk~-t~~~l~------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
..+. ....+|.. |....| +.|.|.+.+++.++.+++.+++
T Consensus 449 ~S~k----------~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~ 495 (550)
T 3m00_A 449 ATYE----------VEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINE 495 (550)
T ss_dssp HSHH----------HHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH----------HHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7653 23455655 566554 5788999999999999888864
No 54
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=90.39 E-value=5.3 Score=31.23 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHccHHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhh-hC-
Q 042175 41 DVSLSELNFIHRHKSEKFVEASI-VSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDML-RG- 117 (170)
Q Consensus 41 ~~~~~~~~~i~~~KTg~L~~~~~-~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~-~g- 117 (170)
.++.++|..+.+.-+|..+-.++ ..++- ...+++..+.+..+-...+...-+.||+..+..+...|. +.. +|
T Consensus 151 ~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g-~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~----~~h~~~~ 225 (300)
T 1di1_A 151 IHELGHYLEYREKDVGKALLSALMRFSMG-LRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEEASR----TGHKEGA 225 (300)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHHT-CCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCC-------------
T ss_pred CCCHHHHHHHHhhhccHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc----ccccccc
Confidence 38999999997666665433332 33322 234677777888899999999999999998865432222 100 01
Q ss_pred -CCchHHHH------HHHHHHHHHHHHHHHHHHHhh
Q 042175 118 -KATYPKLV------GIDESKNYAKELLAKAKQELA 146 (170)
Q Consensus 118 -k~t~~~l~------~~e~a~~~~~~~~~~a~~~L~ 146 (170)
..|.+.++ +.+.|.+.+.+.++.+++.+.
T Consensus 226 ~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~ 261 (300)
T 1di1_A 226 FLCSAVKVLAEESKLGIPATKRVLWSMTREWETVHD 261 (300)
T ss_dssp -CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 23566555 356666666666666554444
No 55
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=90.30 E-value=3 Score=34.10 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 71 GGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 71 g~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
|.+.+....+...-+.|=.+.=|.|||.| .+|.|.|++|+-..+|...|....+-....|.+.+...+
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 130 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVD-----------ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTN 130 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccC-----------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444445556667788888999999976 457889999999999988888888888888888777653
No 56
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=90.22 E-value=2.3 Score=34.88 Aligned_cols=73 Identities=19% Similarity=0.089 Sum_probs=51.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 042175 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQEL 145 (170)
Q Consensus 66 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L 145 (170)
++.+.|.+.+....+..--+.|=.+.=|.|||.| .+|.|.|++|.-..+|...|....+-.+..|-+.+
T Consensus 64 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 132 (341)
T 3mzv_A 64 AARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD-----------ESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLM 132 (341)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC-----------------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC-----------CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3344444444455566667777888999999966 45788999999999999888888888888888888
Q ss_pred hcCC
Q 042175 146 AYFD 149 (170)
Q Consensus 146 ~~l~ 149 (170)
...+
T Consensus 133 ~~~~ 136 (341)
T 3mzv_A 133 TDTG 136 (341)
T ss_dssp GGGC
T ss_pred HhCC
Confidence 8764
No 57
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=89.97 E-value=1.9 Score=34.71 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042175 73 NEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDP 150 (170)
Q Consensus 73 ~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~ 150 (170)
+.+....+..--+-|=.+.-|.|||.| .+|.|.|++|.-..+|...|....+-....|-+.+..+++
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD-----------~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~ 132 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD-----------QHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA 132 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC-----------CCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334445566666777888999999976 3467889999999999999888888888999888887753
No 58
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=89.18 E-value=1.8 Score=36.79 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=46.1
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHHHHHHHHHHHhc-CCCHHHHH--HHHHHHHHHHHHHhHHhhhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFVEASIVSGVIIG-GGNEEEIE--RMRNYGKCVGMAYQLWNDIVD 99 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~~~~~~~ga~la-g~~~~~~~--~l~~~g~~lG~afQi~DDilD 99 (170)
..++.+-..+..|. +..++.++|.++ +..||...-+++ +....+ ..+++..+ .+.++-...+.+.-+.|||..
T Consensus 265 ~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~S 342 (433)
T 3v1v_A 265 ARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI-TDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYS 342 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH-HHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHH
Confidence 34456666666653 334899999998 456654321111 111122 23455443 567788888999999999988
Q ss_pred ccC
Q 042175 100 VIG 102 (170)
Q Consensus 100 ~~~ 102 (170)
|..
T Consensus 343 y~k 345 (433)
T 3v1v_A 343 YTK 345 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 59
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=87.92 E-value=3.7 Score=33.55 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=54.4
Q ss_pred hcC-CCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042175 69 IGG-GNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 69 lag-~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
+++ .+.+....+..--+.|=.+.=|.||+.| .+|.+.|++|.-..+|...|....+-....|-+.+..
T Consensus 69 ~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~ 137 (334)
T 3pko_A 69 FGNAATPAQLQAGAAAIEILHVGTLIHDDVID-----------DSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLK 137 (334)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC-----------CCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence 444 3666566666677888888999999977 3467889999999999888888888888888888877
Q ss_pred CC
Q 042175 148 FD 149 (170)
Q Consensus 148 l~ 149 (170)
++
T Consensus 138 ~~ 139 (334)
T 3pko_A 138 ST 139 (334)
T ss_dssp HC
T ss_pred cC
Confidence 64
No 60
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=87.76 E-value=13 Score=32.31 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=70.3
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHH-HHHHHHHHHHhcCCCHHHHHHH---HHHHHHHHHHHhHHhhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKF-VEASIVSGVIIGGGNEEEIERM---RNYGKCVGMAYQLWNDIV 98 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~afQi~DDil 98 (170)
..++.+-..+..|. +..||.++|.+....-+|.- +......++- ...+++..+.+ .++-+..++..-+.||+.
T Consensus 365 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g-~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~ 443 (543)
T 2ong_A 365 VDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVT-DSFTKETVDSLYKYHDLVRWSSFVLRLADDLG 443 (543)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHS-SCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcC-CCCCHHHHHHhcccHHHHHHHHHHHHHhcccc
Confidence 44555555565554 33489999999865444433 2222222221 12355544443 457777788888999987
Q ss_pred hccCCCCCCCccchHhhhCCC-chHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 99 DVIGSPETKETTGRDMLRGKA-TYPKLV------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 99 D~~~~~~~gk~~~~D~~~gk~-t~~~l~------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
.+. .+...|.. |.+.+| ..+.|.+.+...++.+++.+.+
T Consensus 444 S~~----------~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~ 489 (543)
T 2ong_A 444 TSV----------EEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNA 489 (543)
T ss_dssp SSH----------HHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh----------hccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 653 23445554 666665 4788888899999999998887
No 61
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=87.08 E-value=6.9 Score=31.41 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042175 71 GGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDP 150 (170)
Q Consensus 71 g~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~ 150 (170)
+.+.+....+..--+.|=.+.=|.|||.| .+|.|.|++|.-..+|...|....+-....|.+.+..++.
T Consensus 41 ~~~~~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~ 109 (301)
T 2q80_A 41 KVPEDKLQIIIEVTEMLHNASLLIDDIED-----------NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDH 109 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHccccC-----------CCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44555555566666777778889999976 3467889999999999998888888888888888887743
No 62
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=86.75 E-value=6.6 Score=31.92 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042175 71 GGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 71 g~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
|.+.+....+..--+.|=.+.=|.||| .| .+|+|.|++|.-..+|...|.-..+-+...|-+.+...
T Consensus 61 g~~~~~~~~~A~avEliH~aSLIHDDip~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~ 129 (317)
T 4f62_A 61 GDISSLTDASAAALESIHAYSLIHDDLPAMD-----------NDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNP 129 (317)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHSTTSC-----------C-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccccc-----------CCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444455666667777888899998 54 45789999999999999999888888999999999877
Q ss_pred C
Q 042175 149 D 149 (170)
Q Consensus 149 ~ 149 (170)
+
T Consensus 130 ~ 130 (317)
T 4f62_A 130 T 130 (317)
T ss_dssp T
T ss_pred c
Confidence 4
No 63
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=86.59 E-value=10 Score=29.90 Aligned_cols=101 Identities=13% Similarity=-0.015 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHccHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCC
Q 042175 41 DVSLSELNFIHRHKSEKFVEAS-IVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKA 119 (170)
Q Consensus 41 ~~~~~~~~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~ 119 (170)
.++.++|..+.+.-+|..+-.+ +..++- -..+++..+.+..+-...+...-+.||+..+..+...|....+ ......
T Consensus 165 ~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g-~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~-~~~~~~ 242 (320)
T 3bny_A 165 PMGLGGYLEYRERDVGKELLAALMRFSMG-LKLSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHS-EGGILC 242 (320)
T ss_dssp CCCHHHHHHHHHTCHHHHHHHHHHHHHHT-CCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCC------------CC
T ss_pred CCCHHHHHHHhhhcccHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHhhccccc-cccccc
Confidence 3899999999777777553332 233321 2346777777888999999999999999888533211210000 000134
Q ss_pred chHHHH------HHHHHHHHHHHHHHHHHH
Q 042175 120 TYPKLV------GIDESKNYAKELLAKAKQ 143 (170)
Q Consensus 120 t~~~l~------~~e~a~~~~~~~~~~a~~ 143 (170)
|.+.++ +.+.|.+.+.+.++...+
T Consensus 243 N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~ 272 (320)
T 3bny_A 243 TSVQILAQEADVTAEAAKRVLFVMCREWEL 272 (320)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 666555 345566555555554444
No 64
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=86.17 E-value=7 Score=31.91 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042175 71 GGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDP 150 (170)
Q Consensus 71 g~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~ 150 (170)
|.+.+....+..--+.|=.+.=|.|||.| .+|.|.|++|.-..+|...|....+-....|-+.+..++.
T Consensus 56 ~~~~~~~~~~A~avEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~ 124 (340)
T 2e8v_A 56 NLPKDQLAIVSQIVELLHNSSLLIDDIED-----------NAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTT 124 (340)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCcccc-----------CCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555445556666666777889999976 3467889999999999999999999999999999988754
No 65
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=86.06 E-value=4.4 Score=32.85 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=53.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042175 67 VIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELA 146 (170)
Q Consensus 67 a~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~ 146 (170)
+.+.|.+.+..-.+..--+.+=.+.-|.||+.| .+|.+.|++|.-..+|...|....+-....|-+.+.
T Consensus 56 ~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 124 (325)
T 3aqb_B 56 GFLNDTQKDDLIRTAVSLELVHMASLVHDDYID-----------NSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIA 124 (325)
T ss_dssp HTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc-----------CCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHH
Confidence 333344433344555566666778889999977 345788999999999999888888888888988888
Q ss_pred cCC
Q 042175 147 YFD 149 (170)
Q Consensus 147 ~l~ 149 (170)
.++
T Consensus 125 ~~~ 127 (325)
T 3aqb_B 125 TIN 127 (325)
T ss_dssp TCC
T ss_pred hCC
Confidence 764
No 66
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=85.79 E-value=3.9 Score=33.83 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 042175 67 VIIGG-GNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQEL 145 (170)
Q Consensus 67 a~lag-~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L 145 (170)
+.+.+ .+.+..-.+...-+.|=.+.=|.|||.| .+|++.|++|.-..+|...|....+-.+..|-+.+
T Consensus 86 ~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 154 (360)
T 3lmd_A 86 SEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD-----------EASMRRGVPSANARWDNSVAILAGDILLAHASGLM 154 (360)
T ss_dssp HTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcC-----------CCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHH
Confidence 33444 4444444555566777788899999976 35678899999899988888777777777777777
Q ss_pred hcCC
Q 042175 146 AYFD 149 (170)
Q Consensus 146 ~~l~ 149 (170)
..++
T Consensus 155 ~~~~ 158 (360)
T 3lmd_A 155 SQLG 158 (360)
T ss_dssp HHHC
T ss_pred HHCC
Confidence 7664
No 67
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=85.64 E-value=6.5 Score=31.60 Aligned_cols=72 Identities=15% Similarity=-0.012 Sum_probs=56.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 042175 67 VIIGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQE 144 (170)
Q Consensus 67 a~lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~ 144 (170)
+.+.|.+.+....+..--+.|=.+.=|.||| .| .+|+|.|++|.-..+|...|....+-+...|-+.
T Consensus 53 ~~~~g~~~~~~~~~A~avEliH~asLIHDDip~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 121 (297)
T 3m0g_A 53 AAIHGISMAQAMPAALAVEALHAYSLVHDDMPCMD-----------NDDLRRGLPTVHKKWDDATAVLAGDALQTLAFEL 121 (297)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhcCccccC-----------CCCccCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 3344556666666666677777888899998 55 3467899999999999999988888889999988
Q ss_pred hhcCC
Q 042175 145 LAYFD 149 (170)
Q Consensus 145 L~~l~ 149 (170)
+....
T Consensus 122 l~~~~ 126 (297)
T 3m0g_A 122 CTDPV 126 (297)
T ss_dssp TTCGG
T ss_pred HHHhc
Confidence 88763
No 68
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=85.21 E-value=3.1 Score=34.31 Aligned_cols=74 Identities=20% Similarity=0.117 Sum_probs=56.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 042175 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQEL 145 (170)
Q Consensus 66 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L 145 (170)
++.+.|.+.+....+...-+-|=.+.=|.|||.| .+|.+.|++|.-..+|...|....+-....|-+.+
T Consensus 65 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 133 (352)
T 3nf2_A 65 SAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMD-----------GDEQRRHRDTVWKVHGPAQAILVGDALFALANEVL 133 (352)
T ss_dssp HHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHH-----------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-----------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3444455555455566666777788899999987 34578899999999999998888888889999988
Q ss_pred hcCCC
Q 042175 146 AYFDP 150 (170)
Q Consensus 146 ~~l~~ 150 (170)
..++.
T Consensus 134 ~~~~~ 138 (352)
T 3nf2_A 134 LELGT 138 (352)
T ss_dssp HTTCS
T ss_pred HhCCC
Confidence 88754
No 69
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=85.11 E-value=7 Score=31.16 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042175 71 GGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 71 g~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
|.+.+..-.+..--+.|=.+.=|.||| .| .+|.|.|++|.-..+|...|....+-.+..|-+.+...
T Consensus 62 g~~~~~~~~~A~avEliH~asLIHDDIP~~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~ 130 (284)
T 2ftz_A 62 GVEEEXLLDVAVAVELFHTASLIHDDLPPID-----------NADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXI 130 (284)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCchhcC-----------CCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 445554445556666677778899998 76 34678899999999999999888888888999988887
Q ss_pred CC
Q 042175 149 DP 150 (170)
Q Consensus 149 ~~ 150 (170)
++
T Consensus 131 ~~ 132 (284)
T 2ftz_A 131 GN 132 (284)
T ss_dssp CC
T ss_pred Ch
Confidence 43
No 70
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=83.89 E-value=6.3 Score=31.64 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 77 IERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 77 ~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
...+..--+.+=.+.=|.||+.| .+|.|.|++|+-..+|...|....+-....|-+.+..++
T Consensus 63 ~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 124 (299)
T 1v4e_A 63 AISSLAALELVHLASLLHDDVID-----------GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIG 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC-----------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555666677789999977 346788999988889888887777777777877777663
No 71
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=83.54 E-value=6.2 Score=32.15 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 71 GGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 71 g~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
|.+.+....+..--+.|=.+.=|.|||.| .+|.|.|++|+-..+|...|....+-....|-+.+..++
T Consensus 62 g~~~~~~~~~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 129 (342)
T 1wy0_A 62 GGDPLRAIYPAVAIELIHNYSLVHDDIMD-----------MDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAE 129 (342)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHHHHHHHHH-----------TCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccc-----------CCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcc
Confidence 44444344555566667778889999987 346788999999999999998888888999999888763
No 72
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=82.58 E-value=5.2 Score=32.01 Aligned_cols=70 Identities=17% Similarity=0.044 Sum_probs=50.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHh-hc
Q 042175 69 IGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQEL-AY 147 (170)
Q Consensus 69 lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L-~~ 147 (170)
+.|.+.+....+..--+.+=.+.=|-||+.| .+|.|.|++|.-..+|...|....+-....|-+.+ ..
T Consensus 63 ~~g~~~~~~~~~A~avEliH~asLIHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~ 131 (289)
T 2azj_A 63 ALGGDIKDSYGGALAIEILHSASLALCDIVD-----------LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTS 131 (289)
T ss_dssp HTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT-----------TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC-----------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 3344443334455556666677889999966 34678899999999998888888888888888887 66
Q ss_pred CC
Q 042175 148 FD 149 (170)
Q Consensus 148 l~ 149 (170)
++
T Consensus 132 ~~ 133 (289)
T 2azj_A 132 YG 133 (289)
T ss_dssp HC
T ss_pred Cc
Confidence 54
No 73
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=82.43 E-value=4 Score=33.57 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=46.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 042175 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQEL 145 (170)
Q Consensus 66 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L 145 (170)
++.+.|.+.+....+...-+.|=.+.=|.||+.| .+|+|.|++|.-..+|...|.-..+-++..|-+.+
T Consensus 76 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l 144 (345)
T 3oyr_A 76 AARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD-----------GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELM 144 (345)
T ss_dssp HHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC--------------------CCCSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC-----------CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445566666777788899999965 34678888888888888888777777788888777
Q ss_pred hcCC
Q 042175 146 AYFD 149 (170)
Q Consensus 146 ~~l~ 149 (170)
..++
T Consensus 145 ~~~~ 148 (345)
T 3oyr_A 145 VETN 148 (345)
T ss_dssp HTTT
T ss_pred HhCC
Confidence 7664
No 74
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=82.05 E-value=9.2 Score=30.93 Aligned_cols=61 Identities=21% Similarity=0.098 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 78 ERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 78 ~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
..+..--+.|=.+.=|.||+ .| .+|+|.|++|.=..+|...|....+-+...|-+.+...+
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~ 135 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMD-----------NDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATD 135 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHHHHHHHHHHHCCchhcc-----------CCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555566777788899998 76 346789999999999999999888899999999988754
No 75
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=81.76 E-value=9.5 Score=30.69 Aligned_cols=69 Identities=22% Similarity=0.173 Sum_probs=52.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042175 69 IGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELA 146 (170)
Q Consensus 69 lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~ 146 (170)
+++..++....+..--+.|=.+.=|.||| .| .+|+|.|++|.-..+|...|....+-+...|-+.+.
T Consensus 65 ~g~~~~~~~~~~A~avEliH~asLIHDDIP~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~ 133 (302)
T 3p8l_A 65 FQKEMETQDYQVAASLEMIHTYSLIHDDLPAMD-----------DDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLS 133 (302)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHCCchhcc-----------CCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHH
Confidence 34433324445556667777888999999 76 346789999999999999888888888888888888
Q ss_pred cC
Q 042175 147 YF 148 (170)
Q Consensus 147 ~l 148 (170)
..
T Consensus 134 ~~ 135 (302)
T 3p8l_A 134 LS 135 (302)
T ss_dssp TS
T ss_pred hc
Confidence 75
No 76
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=81.39 E-value=4.4 Score=35.45 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=63.9
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHH-HHHHHHHHHHhcC-CCHHH-HHH---HHHHHHHHHHHHhHHhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKF-VEASIVSGVIIGG-GNEEE-IER---MRNYGKCVGMAYQLWND 96 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag-~~~~~-~~~---l~~~g~~lG~afQi~DD 96 (170)
..++.+-..+..|. +..||.++|.+....-+|.- +......+ ++. .+++. .+. ..++-+..++..-+.||
T Consensus 371 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~--~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~ND 448 (549)
T 1n1b_A 371 VDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFT--FANASHDTAVIDSLYQYHDILCLAGIILRLPDD 448 (549)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTT--STTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHH--cCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcc
Confidence 44455555555553 33489999999864444432 22211111 121 23444 333 34577788999999999
Q ss_pred hhhccCCCCCCCccchHhhhCCC-chHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 97 IVDVIGSPETKETTGRDMLRGKA-TYPKLV------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 97 ilD~~~~~~~gk~~~~D~~~gk~-t~~~l~------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
+..+.... ..|.. |.+.+| +.|.|.+.+++.++.+++.+++
T Consensus 449 i~S~~~E~----------~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~ 496 (549)
T 1n1b_A 449 LGTSYFEL----------ARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNT 496 (549)
T ss_dssp HC-------------------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhh----------ccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 87664332 34543 666555 4788999999999999987775
No 77
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=81.37 E-value=4 Score=33.66 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042175 73 NEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 73 ~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
+.+....+..--+.|=.+.-|.|||.| .+|.+.|++|.-..+|...|....+-+...|-+.+..
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~ 126 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIID-----------RGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLD 126 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHT-----------TCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCcccc-----------CCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhC
Confidence 333344555566777788999999976 3467889999999999999888888888888888843
No 78
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=80.45 E-value=17 Score=29.38 Aligned_cols=71 Identities=18% Similarity=0.077 Sum_probs=51.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042175 67 VIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELA 146 (170)
Q Consensus 67 a~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~ 146 (170)
+.+.|.+.+..-.+..--+-|=.+.=|.|||.| .+|.|.|++|+=..+|...|....+-....|-+.+.
T Consensus 51 ~~~~~~~~~~~~~~A~avEliH~asLihDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~ 119 (330)
T 1wmw_A 51 ALAHGAPLEAGLEAATALELFQNWVLVHDDIED-----------GSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLA 119 (330)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc-----------CCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHH
Confidence 334455555545566666777778899999977 345788888988888888888877777777777776
Q ss_pred cC
Q 042175 147 YF 148 (170)
Q Consensus 147 ~l 148 (170)
.+
T Consensus 120 ~~ 121 (330)
T 1wmw_A 120 EG 121 (330)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 79
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=80.38 E-value=19 Score=28.67 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=52.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 042175 67 VIIGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQE 144 (170)
Q Consensus 67 a~lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~ 144 (170)
+.+.|.+.+....+..--+.|=.+.=|.||| .| .+|.|.|++|.-..+|...|.-.-+-....|-+.
T Consensus 56 ~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D-----------~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~ 124 (299)
T 1rqj_A 56 GHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD-----------DDDLRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT-----------CCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc-----------CCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHH
Confidence 3344555554444555556666677889998 76 3467889999999999988888888888888888
Q ss_pred hhcC
Q 042175 145 LAYF 148 (170)
Q Consensus 145 L~~l 148 (170)
+...
T Consensus 125 l~~~ 128 (299)
T 1rqj_A 125 LSDA 128 (299)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8774
No 80
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=80.26 E-value=9.6 Score=30.66 Aligned_cols=71 Identities=18% Similarity=0.086 Sum_probs=54.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 042175 68 IIGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQEL 145 (170)
Q Consensus 68 ~lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L 145 (170)
.+.|.+.+....+..--+.|=.+.=|.||| .| .+|+|.|++|.-..+|...|....+-+...|-+.+
T Consensus 57 ~~~g~~~~~~~~~A~aiEliH~asLIHDDip~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l 125 (304)
T 3lsn_A 57 EALGGKPEQANGAACAVELIHAYSLVHDDLPAMD-----------DDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSAL 125 (304)
T ss_dssp HHTTCCGGGGHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc-----------CCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 344555554555666667777788899998 55 34678999999999999999888888899999999
Q ss_pred hcCC
Q 042175 146 AYFD 149 (170)
Q Consensus 146 ~~l~ 149 (170)
...+
T Consensus 126 ~~~~ 129 (304)
T 3lsn_A 126 LDPA 129 (304)
T ss_dssp HCTT
T ss_pred HHhc
Confidence 8764
No 81
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=79.57 E-value=2.2 Score=34.35 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042175 75 EEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 75 ~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
+....+..--+-|=.+.=|.||+.| .+|+|.|++|.-..+|...|.-..+-+...|-+.+...
T Consensus 62 ~~~~~~A~avEliH~asLIHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~ 124 (295)
T 3ipi_A 62 SRSLNAALAVEMMHSASLIHDDLLD-----------QGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY 124 (295)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHH-----------HHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCcC-----------CCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc
Confidence 3344555566777788999999977 34667788887777777666666666666666666554
No 82
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=78.17 E-value=9.2 Score=31.13 Aligned_cols=68 Identities=21% Similarity=0.132 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042175 71 GGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 71 g~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
|.+.+....+..--+.|=.+.=|.||| .| .+|+|.|++|.-..+|...|....+-+...|-+.+...
T Consensus 66 g~~~~~~~~~A~avEliH~aSLIHDDip~mD-----------~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~ 134 (324)
T 3ts7_A 66 GVAADLLDGPACAVEFIHVYSLIHDDLPAMD-----------DDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQD 134 (324)
T ss_dssp TCCGGGTHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCccccc-----------CCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 445544455666667777788899998 55 34678999999999999999888888899999888876
Q ss_pred C
Q 042175 149 D 149 (170)
Q Consensus 149 ~ 149 (170)
+
T Consensus 135 ~ 135 (324)
T 3ts7_A 135 P 135 (324)
T ss_dssp T
T ss_pred c
Confidence 4
No 83
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=76.43 E-value=25 Score=27.94 Aligned_cols=69 Identities=26% Similarity=0.256 Sum_probs=48.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042175 69 IGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELA 146 (170)
Q Consensus 69 lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~ 146 (170)
+.|.+.+..-.+..--+-|=.+.=|.||| .| .+|.|.|++|.=..+|...|.-.-+-....|-+.+.
T Consensus 66 ~~g~~~~~~~~~A~avEliH~asLiHDDip~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~ 134 (293)
T 2j1p_A 66 LVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD-----------NDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLA 134 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc-----------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 33545544444555555666677789997 55 346788999999999888887777777777777776
Q ss_pred cC
Q 042175 147 YF 148 (170)
Q Consensus 147 ~l 148 (170)
..
T Consensus 135 ~~ 136 (293)
T 2j1p_A 135 SA 136 (293)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 84
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=76.34 E-value=13 Score=32.60 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=60.6
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHH-HHHHHHHHHHhc-CCCHHHHHHH---HHHHHHHHHHHhHHhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKF-VEASIVSGVIIG-GGNEEEIERM---RNYGKCVGMAYQLWNDI 97 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L-~~~~~~~ga~la-g~~~~~~~~l---~~~g~~lG~afQi~DDi 97 (170)
..++.+-..+..|. +..||.++|.+....-+|.- +......+ ++ ..+++..+.+ .++-+..++..-+.||+
T Consensus 392 ~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~--~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI 469 (569)
T 2j5c_A 392 VGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFR--LTDSIEEEAAESMHKYHDIVRASCTILRLADDM 469 (569)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHH--SCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhhccHHHHHHHHHHHHHhccc
Confidence 44555555555553 33489999998864444432 22222222 22 2345544442 35777778888899999
Q ss_pred hhccCCCCCCCccchHhhhCCC-chHHHH------HHHHHHHHHHHHHHHHHHHhh
Q 042175 98 VDVIGSPETKETTGRDMLRGKA-TYPKLV------GIDESKNYAKELLAKAKQELA 146 (170)
Q Consensus 98 lD~~~~~~~gk~~~~D~~~gk~-t~~~l~------~~e~a~~~~~~~~~~a~~~L~ 146 (170)
..+..+. ..|.. |.+.+| ..+.|.+.+.+.++.+++.++
T Consensus 470 ~S~~~E~----------~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln 515 (569)
T 2j5c_A 470 GTSLDEV----------ERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMN 515 (569)
T ss_dssp HC--------------------CCHHHHC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhc----------ccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8775432 22332 344443 356777778888888887766
No 85
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=76.15 E-value=24 Score=28.18 Aligned_cols=64 Identities=16% Similarity=0.045 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042175 74 EEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 74 ~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
.+....+..--+.|=.+.=|.||| .| .+|+|.|++|+-..+|...|....+-....|-+.+...
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~ 124 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMD-----------NADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHA 124 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCccccc-----------CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455666667777888999998 55 34678899999999998888888888888888888764
No 86
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=76.13 E-value=18 Score=28.95 Aligned_cols=68 Identities=21% Similarity=0.065 Sum_probs=50.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042175 70 GGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 70 ag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
.|.+.+..-.+..--+.|=.+.-|.||| .| .+|.|.|++|.-..+|...|.-.-+-++..|-+.+..
T Consensus 57 ~g~~~~~~~~~A~avEliH~asLiHDDiP~~D-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~ 125 (301)
T 1rtr_A 57 LNTEYELGMKSAIALEMIHTYSLIHDDLPAMD-----------NDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISS 125 (301)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc-----------CCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433334555556666778899999 65 3467889999999999998888888888888888887
Q ss_pred C
Q 042175 148 F 148 (170)
Q Consensus 148 l 148 (170)
.
T Consensus 126 ~ 126 (301)
T 1rtr_A 126 D 126 (301)
T ss_dssp C
T ss_pred h
Confidence 6
No 87
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=74.64 E-value=19 Score=32.80 Aligned_cols=111 Identities=13% Similarity=0.063 Sum_probs=69.3
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHH-HHHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHhHHhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKF-VEASIVSGVIIGG-GNEEEIERM---RNYGKCVGMAYQLWNDI 97 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L-~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQi~DDi 97 (170)
..++.+-..+..|. +..||.++|.+...--+|.- +-..+..+ ++. .+++..+.. .++-+..+...-+.||+
T Consensus 576 ~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi 653 (764)
T 3p5p_A 576 ELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVSLSWRLTNDT 653 (764)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcc
Confidence 34555555566553 33489999999865544443 22222222 222 345555554 46778889999999999
Q ss_pred hhccCCCCCCCccchHhhhCCC-chHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 98 VDVIGSPETKETTGRDMLRGKA-TYPKLV-------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 98 lD~~~~~~~gk~~~~D~~~gk~-t~~~l~-------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
..+.. ...+|.. +...+| +.|.|.+.+++.++.+++.|++
T Consensus 654 ~S~k~----------E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 701 (764)
T 3p5p_A 654 KTYQA----------EKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASF 701 (764)
T ss_dssp HHHHH----------HHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHH----------HHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 87643 2234443 555443 4678888889999999888875
No 88
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=74.11 E-value=19 Score=33.03 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=67.9
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHH--HHHHHHHHHhcC-CCHHHHHHHH-----HHHHHHHHHHhHH
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFV--EASIVSGVIIGG-GNEEEIERMR-----NYGKCVGMAYQLW 94 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~--~~~~~~ga~lag-~~~~~~~~l~-----~~g~~lG~afQi~ 94 (170)
..++.+-..+..|. +..||.++|.+...--+|.-. -.++..+ ++. .+++..+... ++-+..+...-+.
T Consensus 635 ~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~ 712 (817)
T 3sdr_A 635 EDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTELNSLISRLA 712 (817)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHHHHHHHHHHh
Confidence 44566666666663 334899999998654444422 2222222 222 3566655554 6778889999999
Q ss_pred hhhhhccCCCCCCCccchHhhhCCC-chHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 95 NDIVDVIGSPETKETTGRDMLRGKA-TYPKLV-------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 95 DDilD~~~~~~~gk~~~~D~~~gk~-t~~~l~-------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
||+..+..+. .+|.. +....| ..|.|.+.+++.++.+++.|++
T Consensus 713 NDi~S~k~E~----------~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~ 763 (817)
T 3sdr_A 713 DDTKTYKAEK----------ARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTR 763 (817)
T ss_dssp HHHHSSCC----------------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHH----------hcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9998775433 23332 444433 3678888888889999888875
No 89
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=73.78 E-value=15 Score=33.66 Aligned_cols=111 Identities=12% Similarity=0.003 Sum_probs=68.4
Q ss_pred hhhhhhhHHhhhcC--CCCCCHHHHHHHHHccHHHHH-HHHHHHHHHhcC-CCHHHHHHH---HHHHHHHHHHHhHHhhh
Q 042175 25 EGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFV-EASIVSGVIIGG-GNEEEIERM---RNYGKCVGMAYQLWNDI 97 (170)
Q Consensus 25 ~~l~~GQ~~dl~~~--~~~~~~~~~~~i~~~KTg~L~-~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~afQi~DDi 97 (170)
..++.+-..+..|. +..||.++|.+...--+|.-. ...+..++ +. .+++..+.. .++-+..+...-+.||+
T Consensus 607 ~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~--G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi 684 (785)
T 3s9v_A 607 KVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFT--GEVLTDEVLSKIDRESRFLQLMGLTGRLVNDT 684 (785)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCS--SSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHc--CCCCCHHHHhcccccHHHHHHHHHHHHHhccc
Confidence 34555555556553 334899999998654444322 22222211 22 345554443 45778888899999999
Q ss_pred hhccCCCCCCCccchHhhhCCC-chHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Q 042175 98 VDVIGSPETKETTGRDMLRGKA-TYPKLV-------GIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 98 lD~~~~~~~gk~~~~D~~~gk~-t~~~l~-------~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
..+.. ...+|.. +...+| +.|.|.+.+++.++.+++.|++
T Consensus 685 ~S~k~----------E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~ 732 (785)
T 3s9v_A 685 KTYQA----------ERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNR 732 (785)
T ss_dssp HHHHH----------HHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhH----------HHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 87632 2345544 555544 4678888888888888887765
No 90
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=72.69 E-value=37 Score=27.60 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=52.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 042175 68 IIGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQEL 145 (170)
Q Consensus 68 ~lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L 145 (170)
.+.|.+.+..-.+..--+.|=.+.=|.||| .| .+|++.|++|.=..+|...|.-.-+-++..|-+.+
T Consensus 98 ~~~g~~~~~~~~~A~aiEliH~asLIHDDiPamD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 166 (335)
T 2h8o_A 98 ALLGGDAEAGLHVGAALECLHCYSLVHDDLPAMD-----------DDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDII 166 (335)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc-----------CCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHH
Confidence 334555554444555556666677889998 76 34678899999999999988888888888888888
Q ss_pred hcC
Q 042175 146 AYF 148 (170)
Q Consensus 146 ~~l 148 (170)
...
T Consensus 167 ~~~ 169 (335)
T 2h8o_A 167 ASD 169 (335)
T ss_dssp HST
T ss_pred HHh
Confidence 876
No 91
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=72.24 E-value=25 Score=28.34 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042175 75 EEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAY 147 (170)
Q Consensus 75 ~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~ 147 (170)
+....+..--+.|=.+.=|.||| .| .+|+|.|++|+-..+|...|...-+-....|-+.|..
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~ 137 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMD-----------NAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSN 137 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccC-----------CCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555556666778889998 65 3467889999999998888887777788888888776
No 92
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=72.17 E-value=14 Score=29.81 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=52.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 042175 67 VIIGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQE 144 (170)
Q Consensus 67 a~lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~ 144 (170)
+.+.|.+.+....+..--+.|=.+.=|.||| .| .+|+|.|++|.-..+|...|....+-+...|-+.
T Consensus 62 ~~~~g~~~~~~~~~A~aiEliH~aSLIHDDip~mD-----------~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 130 (313)
T 3lom_A 62 GDLIDVDQGVLDIIAAALELTHCYSLIHDDLPAMD-----------NDDLRRGKPSCHKAFDEATAILVGDGMQALAIEV 130 (313)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhCCccccc-----------CCCccCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 3444556665566666677777888899998 55 3467889999998888888777777777777777
Q ss_pred hhcC
Q 042175 145 LAYF 148 (170)
Q Consensus 145 L~~l 148 (170)
+...
T Consensus 131 l~~~ 134 (313)
T 3lom_A 131 LLMR 134 (313)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7665
No 93
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=72.02 E-value=8.8 Score=30.86 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 042175 66 GVIIGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQ 143 (170)
Q Consensus 66 ga~lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~ 143 (170)
.+.+.|.+.+....+..--+.|=.+.=|.||| .| .+|+|.|++|.-..+|...|....+-....|-+
T Consensus 61 ~~~~~g~~~~~~~~~A~aiEliH~asLIHDDIp~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~ 129 (302)
T 3p8r_A 61 TGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMD-----------DDELRRGKPTCHIQFDEATAILTGDALQTLAFT 129 (302)
T ss_dssp HHHTTTCCGGGTHHHHHHHHHHHHHHHHHHTCHHHH-----------CCC--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCccccc-----------CCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHH
Confidence 33444555555555666667777889999998 66 346788999998899988888888888888888
Q ss_pred HhhcCC
Q 042175 144 ELAYFD 149 (170)
Q Consensus 144 ~L~~l~ 149 (170)
.+...+
T Consensus 130 ~l~~~~ 135 (302)
T 3p8r_A 130 ILAEGD 135 (302)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 888763
No 94
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=71.80 E-value=6.1 Score=32.64 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=39.9
Q ss_pred HHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042175 85 KCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 85 ~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l 148 (170)
+-|=.++=|.||+.| .+|+|.|++|+=..+|...|.....-....|.+.+..+
T Consensus 105 EliH~asLiHDDimD-----------~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~ 157 (368)
T 2q58_A 105 EAIQALILIADDIMD-----------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFEL 157 (368)
T ss_dssp HHHHHHHHHHHHHHT-----------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhccc-----------CCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHh
Confidence 555566677899976 45788999999999988877777777777777776654
No 95
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=71.76 E-value=40 Score=27.90 Aligned_cols=64 Identities=22% Similarity=0.174 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHH----------------HHHHHHHHHHHH
Q 042175 74 EEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLV----------------GIDESKNYAKEL 137 (170)
Q Consensus 74 ~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~----------------~~e~a~~~~~~~ 137 (170)
.+..-.+..--+-|=.+.=|.|||.| .+|++.|++|+-..| |...|.-.-+-.
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD-----------~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~L 155 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID-----------SSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMA 155 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----------C-----------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC-----------CCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHH
Confidence 44444555556667778889999976 357788888888764 888888777888
Q ss_pred HHHHHHHhhcC
Q 042175 138 LAKAKQELAYF 148 (170)
Q Consensus 138 ~~~a~~~L~~l 148 (170)
+..|.+.+...
T Consensus 156 l~~A~~~l~~~ 166 (380)
T 3lk5_A 156 LVWAEDMLQDS 166 (380)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHc
Confidence 88888888775
No 96
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=70.53 E-value=20 Score=23.69 Aligned_cols=72 Identities=26% Similarity=0.286 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-HHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 042175 74 EEEIERMRNYGKCVGMAYQ-LWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFDPAK 152 (170)
Q Consensus 74 ~~~~~~l~~~g~~lG~afQ-i~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~~~~ 152 (170)
.+..++...+|+.+|-.|| |.|++-+|.... +.|. ++ .......+....+..-|+..
T Consensus 8 ~EL~~aA~V~gK~~G~SYq~iid~l~eyh~~~------~~~~------------~e----~l~~L~~kie~Yl~~hPdS~ 65 (90)
T 4err_A 8 QELKERAKVFAKPIGASYQGILDQLDLVHQAK------GRDQ------------IA----ASFELNKKINDYIAEHPTSG 65 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------HHHH------------HH----HHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHc------chHH------------HH----HHHHHHHHHHHHHhcCCchh
Confidence 4566788899999999996 778887776543 1121 11 23333445555555566643
Q ss_pred -hHHHHHHHHHHHhcc
Q 042175 153 -AAPLDHLVNFMVSFD 167 (170)
Q Consensus 153 -~~~L~~l~~~~~~r~ 167 (170)
.+.|..+.+.+-.|-
T Consensus 66 Rv~al~qlldQv~sr~ 81 (90)
T 4err_A 66 RNQALTQLKEQVTSAL 81 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 478888888877664
No 97
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=69.33 E-value=12 Score=29.69 Aligned_cols=72 Identities=11% Similarity=-0.039 Sum_probs=52.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHhHHhhhh-hccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042175 68 IIGGGNEEEIERMRNYGKCVGMAYQLWNDIV-DVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELA 146 (170)
Q Consensus 68 ~lag~~~~~~~~l~~~g~~lG~afQi~DDil-D~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~ 146 (170)
.+.|.+.+....+..--+.|=.+.-|-|||. | .+|.+.|++|.=..+|...|....+-....|-+.|.
T Consensus 53 ~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~~d-----------D~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~ 121 (274)
T 3kra_B 53 ELVGGDRSQAMAAAAAIHLVHAAAYVHEHLPLT-----------DGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLA 121 (274)
T ss_dssp HHTTCCGGGGHHHHHHHHHHHHHHHHHHTCCCS-----------SSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHcCCccc-----------CCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 3445455545556666677778888999986 2 123478888988888888888888888888888888
Q ss_pred cCCC
Q 042175 147 YFDP 150 (170)
Q Consensus 147 ~l~~ 150 (170)
..+.
T Consensus 122 ~~~~ 125 (274)
T 3kra_B 122 GSVD 125 (274)
T ss_dssp HTCC
T ss_pred hcCC
Confidence 7643
No 98
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=67.90 E-value=12 Score=30.46 Aligned_cols=70 Identities=21% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhh--hhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 042175 67 VIIGGGNEEEIERMRNYGKCVGMAYQLWNDI--VDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQE 144 (170)
Q Consensus 67 a~lag~~~~~~~~l~~~g~~lG~afQi~DDi--lD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~ 144 (170)
+.+.|.+.+....+..--+.|=.+.=|.||+ .| .+|+|.|++|.-..+|...|.-..+-....|-+.
T Consensus 86 ~~~~g~~~~~~~~~A~aiEliH~aSLIHDDIP~mD-----------~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 154 (324)
T 3uca_A 86 YYIYKSDYKKILTPAMAIEMIHTYSLIHDDLPCMD-----------NDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKI 154 (324)
T ss_dssp HHTTCSCGGGGHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc-----------CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3344555554455556667777888899998 76 3467888889888887766666666666666555
Q ss_pred hhc
Q 042175 145 LAY 147 (170)
Q Consensus 145 L~~ 147 (170)
+..
T Consensus 155 l~~ 157 (324)
T 3uca_A 155 LVD 157 (324)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 99
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=67.63 E-value=18 Score=29.11 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 79 RMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 79 ~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
.+..--+.|=.+.=|.||+.| .+|.|.|++|.-..+|...|....+-....|-+.+..++
T Consensus 61 ~~A~aiEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 120 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID-----------KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG 120 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------------------------CCSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCC-----------CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc
Confidence 444555666678889999966 346788888988888877777777777777877777664
No 100
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=61.49 E-value=63 Score=26.11 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042175 80 MRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYFD 149 (170)
Q Consensus 80 l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~~l~ 149 (170)
+..--+.|=.+.=|.|||.| .+|.+.|++|+-..+|...|....+-+...|-+.+..++
T Consensus 92 ~A~avEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~ 150 (348)
T 3apz_A 92 IAEITEMIHVASLLHDDVLD-----------DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALK 150 (348)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccC-----------CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCC
Confidence 33344555556778999976 346788999988888888888888888888877777664
No 101
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=60.13 E-value=25 Score=27.68 Aligned_cols=71 Identities=7% Similarity=-0.052 Sum_probs=48.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042175 67 VIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELA 146 (170)
Q Consensus 67 a~lag~~~~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~~~a~~~L~ 146 (170)
+.+.|.+.+....+..--+.|=.+.-|-|||.|- ++ +.|++|.-..+|...|....+-....|-+.+.
T Consensus 57 ~~~~g~~~~~~~~~A~aiEliH~aSLIHDDI~D~-----------d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~ 124 (273)
T 3qkc_B 57 CELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLT-----------DG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMA 124 (273)
T ss_dssp HHHTTCCGGGTHHHHHHHHHHHHHHHHHHSCCBT-----------TB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHcCcccC-----------cc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666777788889999998753 12 56777777777777777777777777777777
Q ss_pred cCC
Q 042175 147 YFD 149 (170)
Q Consensus 147 ~l~ 149 (170)
..+
T Consensus 125 ~~~ 127 (273)
T 3qkc_B 125 RSM 127 (273)
T ss_dssp HHS
T ss_pred HcC
Confidence 653
No 102
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=48.08 E-value=67 Score=26.65 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHH--HHHHHHHHHHHHHHHhhc
Q 042175 83 YGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDE--SKNYAKELLAKAKQELAY 147 (170)
Q Consensus 83 ~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~--a~~~~~~~~~~a~~~L~~ 147 (170)
.-+-|=.++=|.|||.| .+|+|.|++|+-..+|... +.....-....|-+.|..
T Consensus 113 aiEliH~asLIHDDImD-----------~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~ 168 (395)
T 2ihi_A 113 CIEILQAAFLVADDIMD-----------KGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEI 168 (395)
T ss_dssp HHHHHHHHHHHHHHHHT-----------TCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc-----------CCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667889999966 3467788888776666554 444444444555555554
No 103
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=45.82 E-value=37 Score=28.02 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHHHHHHHHHHHH---HHHHHHhhc
Q 042175 75 EEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELL---AKAKQELAY 147 (170)
Q Consensus 75 ~~~~~l~~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e~a~~~~~~~~---~~a~~~L~~ 147 (170)
+....+..--+-|=.++=|.|||.| .+|.|.|++|+-..+|...|.....-.. ..|-+.|..
T Consensus 95 ~~~~~~A~avEllH~asLIHDDImD-----------~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~ 159 (368)
T 2her_A 95 DSIYLLGWVVEAIQALILIADDIMD-----------SGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSS 159 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----------TCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc-----------CCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555667778889999976 3467888889888888777666666666 555554443
No 104
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=30.34 E-value=1.7e+02 Score=23.90 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHHH
Q 042175 82 NYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGID 128 (170)
Q Consensus 82 ~~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~e 128 (170)
.--+.|=.++=|.|||.|= +|.|.|++|+=..+|..
T Consensus 111 ~avEliH~asLIHDDImD~-----------s~~RRG~pt~h~~~G~~ 146 (374)
T 2qis_A 111 WCVELLQAFFLVADDIMDS-----------SLTRRGQICWYQKPGVG 146 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------CCEETTEECGGGSTTTG
T ss_pred HHHHHHHHHHHHHccccCC-----------CCCCCCCccHHHhcCch
Confidence 3445555677889999652 24555666655554433
No 105
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=29.01 E-value=1.6e+02 Score=23.86 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.4
Q ss_pred HHHHHHHHHhHHhhhhhccCCCCCCCccchHhhhCCCchHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Q 042175 83 YGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGI--DESKNYAKELLAKAKQELAYF 148 (170)
Q Consensus 83 ~g~~lG~afQi~DDilD~~~~~~~gk~~~~D~~~gk~t~~~l~~~--e~a~~~~~~~~~~a~~~L~~l 148 (170)
--+.|=.+.=|.|||.| .+|.|.|++|+-..+|. ..+.....-....|-+.+..+
T Consensus 86 avEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~ 142 (362)
T 1yhl_A 86 MIEFLQAHYLVEDDIMD-----------GSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHY 142 (362)
T ss_dssp HHHHHHHHHHHHHHHHH-----------TCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccC-----------CCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHh
Confidence 44455566778999977 33567788887777776 356666666667777777654
No 106
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=25.95 E-value=75 Score=21.84 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=37.5
Q ss_pred CCHHHHH----HHHHccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHhHHhhhhhccCCC
Q 042175 42 VSLSELN----FIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYG-KCVGMAYQLWNDIVDVIGSP 104 (170)
Q Consensus 42 ~~~~~~~----~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~l~~~g-~~lG~afQi~DDilD~~~~~ 104 (170)
++...|. ++++.+|++...+ ++-...++..+.|+..- ++=|++.||...++...|-+
T Consensus 45 Pt~~~YnRyi~t~a~~~~aAakNf------lmd~V~~E~KeaL~ellEE~PGaalqia~~Li~~lGls 106 (114)
T 3fgx_A 45 PKVSDISRFTKELNSKPDMAMKNL------TFSCIVPEQEEELRQAAEEFPGLTFNTASRLMEIVGAS 106 (114)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHH------HHTTBCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHhcchhHHHHHH------HHHhcCcccHHHHHHHHHHCccHHHHHHHHHHHHhCCc
Confidence 5665544 4555666666443 22233444467777766 78899999999999988754
No 107
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=24.55 E-value=2.8e+02 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhHHhhhhh
Q 042175 80 MRNYGKCVGMAYQLWNDIVD 99 (170)
Q Consensus 80 l~~~g~~lG~afQi~DDilD 99 (170)
+..--+.|=.++=|.|||.|
T Consensus 102 ~A~aiEliH~asLiHDDImD 121 (367)
T 1uby_A 102 VGWCIELFQAASLVADDIMD 121 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccC
Confidence 33444555567788999976
Done!