RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 042175
(170 letters)
>gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases,
head-to-tail. These trans-Isoprenyl Diphosphate
Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4)
condensation reactions. This CD includes all-trans
(E)-isoprenyl diphosphate synthases which synthesize
various chain length (C10, C15, C20, C25, C30, C35, C40,
C45, and C50) linear isoprenyl diphosphates from
precursors, isopentenyl diphosphate (IPP) and
dimethylallyl diphosphate (DMAPP). They catalyze the
successive 1'-4 condensation of the 5-carbon IPP to
allylic substrates geranyl-, farnesyl-, or
geranylgeranyl-diphosphate. Isoprenoid chain elongation
reactions proceed via electrophilic alkylations in which
a new carbon-carbon single bond is generated through
interaction between a highly reactive electron-deficient
allylic carbocation and an electron-rich carbon-carbon
double bond. The catalytic site consists of a large
central cavity formed by mostly antiparallel alpha
helices with two aspartate-rich regions (DDXX(XX)D)
located on opposite walls. These residues mediate
binding of prenyl phosphates via bridging Mg2+ ions,
inducing proposed conformational changes that close the
active site to solvent, protecting and stabilizing
reactive carbocation intermediates. Farnesyl diphosphate
synthases produce the precursors of steroids,
cholesterol, sesquiterpenes, farnsylated proteins, heme,
and vitamin K12; and geranylgeranyl diphosphate and
longer chain synthases produce the precursors of
carotenoids, retinoids, diterpenes, geranylgeranylated
chlorophylls, ubiquinone, and archaeal ether linked
lipids. Isoprenyl diphosphate synthases are widely
distributed among archaea, bacteria, and eukareya.
Length = 259
Score = 115 bits (291), Expect = 2e-32
Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 11 LLRAIVEMSSAIGSEGLAAGQIMDISSEGK-DVSLSELNFIHRHKSEKFVEASIVSGVII 69
RA+ S AI L GQ++D+ SE DV+ E I R K+ A+ + G ++
Sbjct: 106 YPRALELFSEAI--LELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAPLLGALL 163
Query: 70 GGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET--KETTGRDMLRGKATYPKLVGI 127
G +EEE E ++ +G+ +G+A+Q+ +DI+D+ G PET K G D+ GK T P L+ +
Sbjct: 164 AGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGK-PVGSDLREGKCTLPVLLAL 222
Query: 128 DESKNYAKELLAKAKQELAYFDPAKA-APLDHLVNFMVS 165
+ A+E KA + L + A L L +F++
Sbjct: 223 ---RELAREYEEKALEALKALPESPAREALRALADFILE 258
>gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme
metabolism].
Length = 322
Score = 116 bits (293), Expect = 4e-32
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 37/194 (19%)
Query: 7 SPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSG 66
L AI ++ AI GL GQ +D++ E K V+L E + K+ A+ V G
Sbjct: 128 LGSEALEAIKALAEAI--NGLCGGQALDLAFENKPVTLEEYLRVIELKTAALFAAAAVLG 185
Query: 67 VIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETK-ETTGRDMLRGKATYPKLV 125
I+ G +EE +E + +YG+ +G+A+Q+ +DI+D+ G E + G D+ GK T P L+
Sbjct: 186 AILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLL 245
Query: 126 G---------------------------------IDESKNYAKELLAKAKQELAYFDPAK 152
I+ +KN AK + KAK+ L ++
Sbjct: 246 ALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSE 305
Query: 153 AA-PLDHLVNFMVS 165
A L L +F++
Sbjct: 306 AKEALLELADFIIK 319
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase.
Length = 260
Score = 106 bits (267), Expect = 6e-29
Identities = 48/156 (30%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 2 KTKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEA 61
+V P+ I E+++A+G++G GQ+MD+ +EGKD++L E I +K+ A
Sbjct: 94 LLGHVRPEPKYILISELANAVGAQGEV-GQLMDLETEGKDITLEEYLRIVSYKTAALFYA 152
Query: 62 SIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKAT 120
S+ G I+ G +EE+ + + ++G+ +G+A+Q+ +DI+D+ G E + G D+ GK+T
Sbjct: 153 SVQLGAIVAGADEEDEKDLYDFGRDLGLAFQIQDDILDLTGDTEELGKPVGTDLQEGKST 212
Query: 121 YPKLVGIDESKNYAKELLAKA-KQELAYFDPAKAAP 155
P L+ ++ ++ ++LL +A +Q+L+ A
Sbjct: 213 LPVLLALEGAREEQRKLLREAYEQKLSEAAAQGVAL 248
>gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases.
Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of
class 1 isoprenoid biosynthesis enzymes which either
synthesis geranyl/farnesyl diphosphates (GPP/FPP) or
longer chained products from isoprene precursors,
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP), or use geranyl (C10)-, farnesyl
(C15)-, or geranylgeranyl (C20)-diphosphate as
substrate. These enzymes produce a myriad of precursors
for such end products as steroids, cholesterol,
sesquiterpenes, heme, carotenoids, retinoids,
diterpenes, ubiquinone, and archaeal ether linked
lipids; and are widely distributed among archaea,
bacteria, and eukareya. The enzymes in this family share
the same 'isoprenoid synthase fold' and include the
head-to-tail (HT) IPPS which catalyze the successive
1'-4 condensation of the 5-carbon IPP to the growing
isoprene chain to form linear, all-trans, C10-, C15-,
C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid
diphosphates. The head-to-head (HH) IPPS catalyze the
successive 1'-1 condensation of 2 farnesyl or 2
geranylgeranyl isoprenoid diphosphates. Isoprenoid chain
elongation reactions proceed via electrophilic
alkylations in which a new carbon-carbon single bond is
generated through interaction between a highly reactive
electron-deficient allylic carbocation and an
electron-rich carbon-carbon double bond. The catalytic
site consists of a large central cavity formed by mostly
antiparallel alpha helices with two aspartate-rich
regions located on opposite walls. These residues
mediate binding of prenyl phosphates via bridging Mg2+
ions, inducing proposed conformational changes that
close the active site to solvent, stabilizing reactive
carbocation intermediates. Mechanistically and
structurally distinct, cis-IPPS are not included in this
CD.
Length = 236
Score = 103 bits (260), Expect = 4e-28
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 25 EGLAAGQIMDISSEG-KDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNY 83
L GQ +D+ E +L E R+K+ V + G + G ++E+ E +++Y
Sbjct: 95 RELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDY 154
Query: 84 GKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQ 143
G+ +G+A+QL +D++DV G E G D+ G+ T P ++ + + YA+E A +
Sbjct: 155 GRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEYAEEAYAALEA 214
Query: 144 ELAYFDPAKAAPLDHLVNFMVS 165
A+ A + L +F+
Sbjct: 215 LPPSLPRARRALIA-LADFLYR 235
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional.
Length = 299
Score = 105 bits (263), Expect = 6e-28
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 9 DRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVI 68
DR+ I E++SA G G+ GQ +D+ +EGK V L L IHRHK+ + A++ G +
Sbjct: 137 DRI-SMISELASASGIAGMCGGQALDLEAEGKQVPLDALERIHRHKTGALIRAAVRLGAL 195
Query: 69 IGGGN-EEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVG 126
G + + Y + +G+A+Q+ +DI+DV+G T + G D GK+TYP L+G
Sbjct: 196 SAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLG 255
Query: 127 IDESKNYAKELLAKAKQELAYFD--PAKAAPLDHLVNFMVSFDN 168
+++++ A++L+ A+Q L + L+ L N+++ D
Sbjct: 256 LEQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQRDK 299
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes,
Class 1. Superfamily of trans-isoprenyl diphosphate
synthases (IPPS) and class I terpene cyclases which
either synthesis geranyl/farnesyl diphosphates (GPP/FPP)
or longer chained products from isoprene precursors,
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP), or use geranyl (C10)-, farnesyl
(C15)-, or geranylgeranyl (C20)-diphosphate as
substrate. These enzymes produce a myriad of precursors
for such end products as steroids, cholesterol,
sesquiterpenes, heme, carotenoids, retinoids, and
diterpenes; and are widely distributed among archaea,
bacteria, and eukaryota.The enzymes in this superfamily
share the same 'isoprenoid synthase fold' and include
several subgroups. The head-to-tail (HT) IPPS catalyze
the successive 1'-4 condensation of the 5-carbon IPP to
the growing isoprene chain to form linear, all-trans,
C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or
C50-isoprenoid diphosphates. Cyclic monoterpenes,
diterpenes, and sesquiterpenes, are formed from their
respective linear isoprenoid diphosphates by class I
terpene cyclases. The head-to-head (HH) IPPS catalyze
the successive 1'-1 condensation of 2 farnesyl or 2
geranylgeranyl isoprenoid diphosphates. Cyclization of
these 30- and 40-carbon linear forms are catalyzed by
class II cyclases. Both the isoprenoid chain elongation
reactions and the class I terpene cyclization reactions
proceed via electrophilic alkylations in which a new
carbon-carbon single bond is generated through
interaction between a highly reactive electron-deficient
allylic carbocation and an electron-rich carbon-carbon
double bond. The catalytic site consists of a large
central cavity formed by mostly antiparallel alpha
helices with two aspartate-rich regions located on
opposite walls. These residues mediate binding of prenyl
phosphates via bridging Mg2+ ions, inducing proposed
conformational changes that close the active site to
solvent, stabilizing reactive carbocation intermediates.
Generally, the enzymes in this family exhibit an
all-trans reaction pathway, an exception, is the
cis-trans terpene cyclase, trichodiene synthase.
Mechanistically and structurally distinct, class II
terpene cyclases and cis-IPPS are not included in this
CD.
Length = 243
Score = 72.1 bits (177), Expect = 6e-16
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 25 EGLAAGQIMDISSEG-KDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNY 83
L GQ++D+ +L E R+K+ V A + G + GG E +E +R
Sbjct: 89 LDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKL 148
Query: 84 GKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLV------------------ 125
G+ +G+A+QL ND++D G E E GK T P L
Sbjct: 149 GRALGLAFQLTNDLLDYEGDAERGE--------GKCTLPVLYALEYGVPAEDLLLVEKSG 200
Query: 126 GIDESKNYAKELLAKAKQELAYFDPAKAAPLDHLVNFM 163
++E+ +L +A +EL + L+
Sbjct: 201 SLEEALEELAKLAEEALKELNELILSLPDVPRALLALA 238
>gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed.
Length = 323
Score = 69.1 bits (169), Expect = 2e-14
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 37/162 (22%)
Query: 41 DVSLSELNFIHR--HKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIV 98
D +LS LN+I + +K+ + AS + ++ +E++ YGK +G+A+Q+ +D++
Sbjct: 159 DTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVL 218
Query: 99 DVIGSPET-KETTGRDMLRGKATYPKLV-------------------------------- 125
D+ S E+ + G D+ G T P L
Sbjct: 219 DITSSTESLGKPIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKET 278
Query: 126 -GIDESKNYAKELLAKAKQELAYFDPAKA-APLDHLVNFMVS 165
GI+++K+ A E + A Q L + P+ A L + NF+++
Sbjct: 279 NGIEKAKDLALEHMQAAIQCLKFLPPSSAKDSLIEIANFIIN 320
>gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional.
Length = 323
Score = 47.1 bits (112), Expect = 1e-06
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 12 LRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIH--RHKSEKFVEASIVSGVII 69
L+ + MS A+ +A G+++ + + D ++E N++ K+ + EA+ I+
Sbjct: 129 LKVLEVMSEAVNV--IAEGEVLQLMN-VNDPDITEENYMRVIYSKTARLFEAAAQCSGIL 185
Query: 70 GGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKL 124
G E+ + +++YG+ +G A+QL +D++D ET + G D+ GK T P L
Sbjct: 186 AGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLL 241
>gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component
II. Members of this family are component II of the
heterodimeric heptaprenyl diphosphate synthase. The
trusted cutoff was set such that all members identified
are encoded near to a recognizable gene for component I
(in Pfam family pfam07307). This enzyme acts in
menaquinone-7 isoprenoid side chain biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 319
Score = 46.6 bits (111), Expect = 1e-06
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 52 RHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPET-KETT 110
+ K+ + AS G I G NE ++++ +G VGM+YQ+ +DI+D +G+ E +
Sbjct: 167 KRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPA 226
Query: 111 GRDMLRGKATYPKL 124
G D+L+G T P L
Sbjct: 227 GGDLLQGNVTLPVL 240
>gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase.
Length = 416
Score = 41.0 bits (96), Expect = 1e-04
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 28 AAGQIMDISSE-GKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKC 86
A+G+I SS DV+L E +K+ + AS S I G + E+M YGK
Sbjct: 240 ASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKN 299
Query: 87 VGMAYQLWNDIVDVIGSPET-KETTGRDMLRGKATYPKLVGIDES 130
+G+A+Q+ +DI+D S E + G D+ +G T P + +++
Sbjct: 300 LGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEKE 344
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase. Members
of this family all are from cyanobacteria or
plastid-containing eukaryotes. A member from Arabidopsis
(where both plastoquinone and ubiquinone contain the
C(45) prenyl moiety) was characterized by heterologous
expression as a solanesyl diphosphate synthase
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 322
Score = 37.4 bits (87), Expect = 0.002
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 41 DVSLSELNFIHR--HKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIV 98
D LS +++ + +K+ V AS + ++ + + YGK +G+A+Q+ +DI+
Sbjct: 158 DSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDIL 217
Query: 99 DVIGSPET-KETTGRDMLRGKATYPKLVGIDES 130
D GS E + G D+++G T P L ++E
Sbjct: 218 DFTGSTEQLGKPAGSDLMKGNLTAPVLFALEEE 250
>gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase.
Length = 422
Score = 32.2 bits (73), Expect = 0.097
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 18 MSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHR--HKSEKFVEASIVSGVIIGGGNEE 75
+++A+ E L G+ M I+S ++ S ++ + +K+ + S + I+ G E
Sbjct: 232 LATAV--EHLVTGETMQITSS-REQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAE 288
Query: 76 EIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGR----DMLRGKATYPKLVGIDE 129
YG+ +G+A+QL +D++D G T + G+ D+ G T P L ++E
Sbjct: 289 VAVLAFEYGRNLGLAFQLIDDVLDFTG---TSASLGKGSLSDIRHGVITAPILFAMEE 343
>gnl|CDD|214986 smart01035, BOP1NT, BOP1NT (NUC169) domain. This N terminal domain
is found in BOP1-like WD40 proteins.
Length = 264
Score = 31.5 bits (72), Expect = 0.17
Identities = 29/101 (28%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 52 RHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTG 111
K K V A I G I +E E Y K Y LW D ET
Sbjct: 109 AKKIMKLVHA-IRMGWIKPDKPPKEKEEEEEYPK----FYDLWADED-------ETETKF 156
Query: 112 RDMLRGKATYPKLVGIDESKNYAKELL--AKAKQELAYFDP 150
R ++ A L G ES N E L + K+E +P
Sbjct: 157 RIIMHIPAPKLPLPGHAESYNPPPEYLPTEEEKKEWEELEP 197
>gnl|CDD|220311 pfam09609, Cas_GSU0054, CRISPR-associated protein, GSU0054 family
(Cas_GSU0054). This entry represents a rare
CRISPR-associated protein. So far, members are found in
Geobacter sulfurreducens and in two unpublished
genomes: Gemmata obscuriglobus and Actinomyces
naeslundii. CRISPR-associated proteins typically are
found near CRISPR repeats and other CRISPR-associated
proteins, have low levels of sequence identify, have
sequence relationships that suggest lateral transfer,
and show some sequence similarity to DNA-active
proteins such as helicases and repair proteins.
Length = 519
Score = 28.4 bits (63), Expect = 2.0
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 7 SPDRLLRAIVEMSSAIGSEGLAA 29
SP R+ +A+V + + +E
Sbjct: 32 SPWRIFQALVATWAKVDAEDKDV 54
>gnl|CDD|219284 pfam07064, RIC1, RIC1. RIC1 has been identified in yeast as a
Golgi protein involved in retrograde transport to the
cis-Golgi network. It forms a heterodimer with Rgp1 and
functions as a guanyl-nucleotide exchange factor.
Length = 251
Score = 28.1 bits (63), Expect = 2.2
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 20/85 (23%)
Query: 93 LWNDIVDVIGSPET--KETTGRDMLRGKATYPKLVGIDE----SKNYAKELLAKAKQ--- 143
LW + D +G P+ +E L+ A+Y ++ E S + A LL A +
Sbjct: 169 LWRTLFDYLGPPKDLFEECLELGRLKTAASYLLVLQNLEGSASSSDCAVRLLVLALEEKN 228
Query: 144 -ELAYFDPAKAAPLDHLVNFMVSFD 167
EL L F+ + D
Sbjct: 229 WELCK----------ELARFLAALD 243
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 27.6 bits (62), Expect = 3.3
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 129 ESKNYAKELLAKAKQELAYFD 149
+ +E + + K+E+ Y +
Sbjct: 386 RAVEAVEEQIEETKEEIEYLE 406
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase.
Length = 667
Score = 27.8 bits (62), Expect = 3.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 74 EEEIERMRNYGKCVGMA------YQLWNDIVDVIGSPETKETTGRDMLRGKATYP 122
EEE+E +R G Y ++ND+ G+P+ E R +L G +TYP
Sbjct: 9 EEELETLRGDGTGERKEWDRIYDYDVYNDL----GNPDKGEELARPVLGGSSTYP 59
>gnl|CDD|216912 pfam02167, Cytochrom_C1, Cytochrome C1 family.
Length = 217
Score = 27.1 bits (61), Expect = 4.8
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 84 GKCVGMAYQLWNDIVD-VIGSPETKETTGRD 113
G + M L + V+ G+P T + +D
Sbjct: 142 GGAIAMPPPLSDGQVEYEDGTPATYDQMAKD 172
>gnl|CDD|227772 COG5485, COG5485, Predicted ester cyclase [General function
prediction only].
Length = 131
Score = 26.3 bits (58), Expect = 6.5
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 30 GQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVS 65
G+IM I GK V SE F F IV
Sbjct: 87 GEIMGIPPNGKRVRFSENVFYE------FENGKIVE 116
>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA
protein. Members of this protein family are BoxA, the A
component of the BoxAB benzoyl-CoA oxygenase/reductase.
This oxygen-requiring enzyme acts in an aerobic pathway
of benzoate catabolism via coenzyme A ligation. BoxA is
a homodimeric iron-sulphur-flavoprotein and acts as an
NADPH-dependent reductase for BoxB [Energy metabolism,
Other].
Length = 411
Score = 26.4 bits (58), Expect = 8.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 139 AKAKQELAYFDPAKAAPLDHL-VNFMVS 165
A+ K+EL YF P + P D + +NF S
Sbjct: 307 ARTKEELPYFGPLQKLPKDFIDINFAFS 334
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 26.4 bits (58), Expect = 8.5
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 92 QLWNDIVDVIGSPETKETTGRD----MLRGKATYPKLVGIDE------SKNYAK--ELLA 139
QLW+++ D + +P K + G+ + R A P+++ DE +N AK L
Sbjct: 131 QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 140 KAKQELA-----YFDPAKAAPLDHLVNFM 163
+ K+++ +F P +AA + V F+
Sbjct: 191 ELKKDMTIVLVTHF-PQQAARISDYVAFL 218
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 26.4 bits (58), Expect = 9.0
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 42 VSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIE--------RMRNYGKCVGM---A 90
V LS + I R + +E+ I G I EE +E R+R YG+ A
Sbjct: 268 VVLSGFDPIRREIARMTLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGEAAAYEIGA 327
Query: 91 YQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGI 127
L D++ ++G + + + G+++LR KL GI
Sbjct: 328 PNLHPDLIKIMGRLQFRTSYGQNVLRHSVEVGKLAGI 364
>gnl|CDD|233464 TIGR01551, major_capsid_P2, phage major capsid protein, P2 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage P2 and
related phage. This model represents one of several
analogous families lacking detectable sequence
similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 327
Score = 26.4 bits (58), Expect = 9.2
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 22 IGSEGLAAGQIMDISSE--GKDVSLSELNFIHRHKSEKFVEASIVSGVI-IGGGNEEEIE 78
IG G +A D ++ DV+ L + ++ + ++ SG I I G N +
Sbjct: 135 IGWNGQSAAADTDKTANPLLSDVNKGWLKLLQEQRAANVMTSTKSSGKITIFGDNAD--- 191
Query: 79 RMRNYGKCVGMAYQLWNDIVDVI--GSPETKETTGRDMLRGKATYP 122
Y +A+ L + +D P+ G D++ K T
Sbjct: 192 ----YANLDALAFDLKQNQLDPRHRNDPDLVVLVGADLV-SKETKL 232
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.367
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,778,954
Number of extensions: 814954
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 31
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.0 bits)