RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 042175
         (170 letters)



>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Escherichia coli [TaxId:
           562]}
          Length = 299

 Score = 93.5 bits (231), Expect = 3e-24
 Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 2   KTKNVSPDRLLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEA 61
               VS    +  I E++SA G  G+  GQ +D+ +EGK V L  L  IHRHK+   + A
Sbjct: 129 DMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRA 188

Query: 62  SIVSGVIIGGGNEEEIERM-RNYGKCVGMAYQLWNDIVDVIG-SPETKETTGRDMLRGKA 119
           ++  G +  G        +   Y + +G+A+Q+ +DI+DV+G +    +  G D   GK+
Sbjct: 189 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248

Query: 120 TYPKLVGIDESKNYAKELLAKAKQELAYF--DPAKAAPLDHLVNFMVS 165
           TYP L+G+++++  A++L+  A+Q L          + L+ L ++++ 
Sbjct: 249 TYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQ 296


>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Staphylococcus aureus [TaxId:
           1280]}
          Length = 290

 Score = 81.7 bits (200), Expect = 9e-20
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 15  IVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNE 74
           +  +S A G  G+  GQ++D+ SEG+ + L  L  IH+ K+   +  +++S   I   ++
Sbjct: 137 LQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDD 196

Query: 75  EEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETT-GRDMLRGKATYPKLVGIDESKNY 133
              E + +Y   +GM +Q+ +D++D  G         G D+   K+TY  L+G D +++ 
Sbjct: 197 TTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDK 256

Query: 134 AKELLAKAKQELAYFD-PAKAAPLDHLVNFMVS 165
                  A  EL   D       L  +V+   S
Sbjct: 257 LTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYS 289


>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 63.5 bits (153), Expect = 3e-13
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 31  QIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIGGGNEEEIERMRNYGKCVGMA 90
           ++++  S  K ++  E   I   KS      ++    ++     E  E + N G  +G  
Sbjct: 135 ELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLE---GELGEDLYNLGVTIGTI 191

Query: 91  YQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKNYAKELLAKAKQELAYF 148
           YQ+++DI+D  G  +  +    D+  G A++P +  +++     +    +    L  F
Sbjct: 192 YQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFENRDWSGLMSF 249


>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 291

 Score = 30.8 bits (68), Expect = 0.075
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 126 GIDESKNYAKELLAKAKQELAYFD--PAKAAPLDHL 159
             + ++N  KEL AKA +++      P   A + HL
Sbjct: 251 SFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHL 286


>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase
           SerA {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 135

 Score = 25.2 bits (55), Expect = 2.7
 Identities = 10/73 (13%), Positives = 24/73 (32%)

Query: 11  LLRAIVEMSSAIGSEGLAAGQIMDISSEGKDVSLSELNFIHRHKSEKFVEASIVSGVIIG 70
               I +  + + +  LAA + +         S +  + +             VSG + G
Sbjct: 58  FSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYG 117

Query: 71  GGNEEEIERMRNY 83
               ++I ++   
Sbjct: 118 PQLSQKIVQINGR 130


>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus
           aurantiacus [TaxId: 5087]}
          Length = 303

 Score = 25.8 bits (56), Expect = 3.1
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 73  NEEEIERMRNYGKCVGMAYQLWNDIVDVIGSPETKETTGRDMLRGKATYPKLVGIDESKN 132
                  M+N+   +   Y+      DV+     ++ + R  +           I  +  
Sbjct: 101 KNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDY--IPIAFQ 158

Query: 133 YAKELLAKAK 142
            A+     AK
Sbjct: 159 TARAADPNAK 168


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
           {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 24.5 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 91  YQLWNDIVDVIGSPETKETTGRDMLRGKATYP 122
           Y ++ND+    G+P+  E   R +L G +T+P
Sbjct: 37  YDVYNDL----GNPDKSEKLARPVLGGSSTFP 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 621,178
Number of extensions: 28056
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 8
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.4 bits)