BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042177
         (123 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|448439979|ref|ZP_21588227.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorubrum
           saccharovorum DSM 1137]
 gi|445690496|gb|ELZ42706.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorubrum
           saccharovorum DSM 1137]
          Length = 744

 Score = 43.5 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/32 (56%), Positives = 26/32 (81%)

Query: 90  PESESESEPDPDAESESETESESESESESEPD 121
           PE+E+E EP+ DAE E ET++E E E+++EPD
Sbjct: 156 PETEAEQEPEADAEQEPETDAEQEPETDAEPD 187


>gi|357412767|ref|YP_004924503.1| hypothetical protein Sfla_3566 [Streptomyces flavogriseus ATCC
           33331]
 gi|320010136|gb|ADW04986.1| hypothetical protein Sfla_3566 [Streptomyces flavogriseus ATCC
           33331]
          Length = 469

 Score = 40.4 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 91  ESESESEPDPDAESESETESESESESESEPD 121
           ESE+E+E  P+AESE+E   E+ES +ES PD
Sbjct: 98  ESETEAEAGPEAESETEVRPEAESGAESRPD 128



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 90  PESESESEPDPDAESESETESESESESESEPD 121
           PE+ESE+E  P+AES +E+  ++ES +ES P+
Sbjct: 107 PEAESETEVRPEAESGAESRPDAESGAESRPE 138


>gi|448602399|ref|ZP_21656455.1| putative nuclease [Haloferax sulfurifontis ATCC BAA-897]
 gi|445747914|gb|ELZ99368.1| putative nuclease [Haloferax sulfurifontis ATCC BAA-897]
          Length = 744

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 68  APLVNATVNYATCKLYNNCTSTPESESESEPDPDAESESETESESESESESEPDN 122
           AP     V+       +   + PE ES+SEP+ +AES++E E ESES++++E D+
Sbjct: 189 APTAGDVVDDIAANGESEQDTEPEPESDSEPEQEAESDAEQEVESESDADAESDD 243


>gi|255077330|ref|XP_002502308.1| predicted protein [Micromonas sp. RCC299]
 gi|226517573|gb|ACO63566.1| predicted protein [Micromonas sp. RCC299]
          Length = 2154

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 27/33 (81%)

Query: 91  ESESESEPDPDAESESETESESESESESEPDNL 123
           E+E+ES+P+PDAE + E ++ESES+++ EP  +
Sbjct: 430 EAETESKPEPDAEPDVEAQAESESDADVEPKTV 462



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 30/38 (78%), Gaps = 4/38 (10%)

Query: 88  STPESESESEPDPDAESESET----ESESESESESEPD 121
           S  E++SE+EPD DAE+E+E+    ++E+E+ES+ EPD
Sbjct: 403 SDAEAQSEAEPDSDAEAEAESKPEPDAEAETESKPEPD 440



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 28/33 (84%)

Query: 89  TPESESESEPDPDAESESETESESESESESEPD 121
           TPE E++ E D +A+SE+E +S++E+E+ES+P+
Sbjct: 394 TPEGEAKVESDAEAQSEAEPDSDAEAEAESKPE 426


>gi|308451735|ref|XP_003088781.1| hypothetical protein CRE_19595 [Caenorhabditis remanei]
 gi|308245332|gb|EFO89284.1| hypothetical protein CRE_19595 [Caenorhabditis remanei]
          Length = 290

 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 91  ESESESEPDPDAESESETESESESESESEPDN 122
           E+E E EP+ D E +S+TESE ES+ +SEPD+
Sbjct: 104 EAEKEDEPNTDQEDKSDTESEPESQDDSEPDH 135


>gi|395770633|ref|ZP_10451148.1| hypothetical protein Saci8_12696 [Streptomyces acidiscabies 84-104]
          Length = 688

 Score = 35.8 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 90  PESESESE--PDPDAESESETESESESESESE 119
           PESESE E  P P++ESE   ES  E ESE E
Sbjct: 461 PESESEGELKPGPESESEQRLESRLEPESEGE 492


>gi|308466570|ref|XP_003095538.1| hypothetical protein CRE_17505 [Caenorhabditis remanei]
 gi|308245200|gb|EFO89152.1| hypothetical protein CRE_17505 [Caenorhabditis remanei]
          Length = 261

 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 25/32 (78%)

Query: 91  ESESESEPDPDAESESETESESESESESEPDN 122
           E+E E EP+ D  ++S+TESE ES+ +SEPD+
Sbjct: 104 EAEQEDEPNTDQRNKSDTESEPESQDDSEPDH 135


>gi|448330922|ref|ZP_21520198.1| DNA polymerase IV [Natrinema versiforme JCM 10478]
 gi|445610758|gb|ELY64527.1| DNA polymerase IV [Natrinema versiforme JCM 10478]
          Length = 448

 Score = 35.4 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 91  ESESESEPDPDAESESETESESESESE 117
           ES  ES+P+PD+ESE ET SE ES +E
Sbjct: 389 ESAVESDPEPDSESEPETGSERESGAE 415


>gi|308473040|ref|XP_003098746.1| hypothetical protein CRE_03350 [Caenorhabditis remanei]
 gi|308268180|gb|EFP12133.1| hypothetical protein CRE_03350 [Caenorhabditis remanei]
          Length = 240

 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 91  ESESESEPDPDAESESETESESESESESEPDN 122
           E+E E EP+ D E +S+TESE ES+ +SEPD+
Sbjct: 112 EAEQEDEPNNDEEDKSDTESEPESQDDSEPDH 143


>gi|291530309|emb|CBK95894.1| Cell division septal protein [Eubacterium siraeum 70/3]
          Length = 513

 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 90  PESESESEPDPDAESESETESESESESESEP 120
           P SE+E E +P +E+ESETE  SE++SE+EP
Sbjct: 456 PPSEAEPETEPPSEAESETEPPSETDSETEP 486


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.305    0.123    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,832,001,645
Number of Sequences: 23463169
Number of extensions: 68710580
Number of successful extensions: 692566
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3188
Number of HSP's successfully gapped in prelim test: 451
Number of HSP's that attempted gapping in prelim test: 600276
Number of HSP's gapped (non-prelim): 75128
length of query: 123
length of database: 8,064,228,071
effective HSP length: 89
effective length of query: 34
effective length of database: 5,976,006,030
effective search space: 203184205020
effective search space used: 203184205020
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 69 (31.2 bits)