Query 042177
Match_columns 123
No_of_seqs 15 out of 17
Neff 1.5
Searched_HMMs 29240
Date Mon Mar 25 05:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2byk_A Chrac-16; nucleosome sl 77.7 0.46 1.6E-05 34.2 0.0 11 13-23 51-61 (140)
2 2byk_A Chrac-16; nucleosome sl 69.0 1 3.4E-05 32.4 0.0 6 16-21 57-62 (140)
3 2zd7_A VPS75, vacuolar protein 56.2 1.7 5.9E-05 33.4 -0.8 9 77-85 215-223 (264)
4 4aco_A Centromere DNA-binding 40.1 6 0.00021 36.9 0.0 8 87-94 682-689 (956)
5 1so2_A CGMP-inhibited 3',5'-cy 24.4 19 0.00066 29.4 0.5 22 66-87 342-365 (420)
6 2ayu_A Nucleosome assembly pro 14.6 13 0.00044 30.8 -2.6 52 70-121 352-403 (417)
7 2r28_C Serine/threonine-protei 13.5 66 0.0023 18.0 0.9 9 3-11 17-25 (26)
8 3tj1_A RNA polymerase I-specif 12.2 46 0.0016 29.2 0.0 39 85-123 292-333 (649)
9 3e8x_A Putative NAD-dependent 11.9 28 0.00094 23.2 -1.2 41 25-67 2-42 (236)
10 1rzh_M Reaction center protein 11.7 98 0.0034 25.5 1.8 36 31-66 4-50 (307)
No 1
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=77.68 E-value=0.46 Score=34.18 Aligned_cols=11 Identities=45% Similarity=0.558 Sum_probs=5.5
Q ss_pred HHHHHHHhhcc
Q 042177 13 NLFLLVLASNA 23 (123)
Q Consensus 13 nlfllvlasna 23 (123)
-+|+.-|+.-|
T Consensus 51 ElFI~~Lt~~A 61 (140)
T 2byk_A 51 ELFVRHLAGAA 61 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 2
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=68.96 E-value=1 Score=32.40 Aligned_cols=6 Identities=33% Similarity=-0.064 Sum_probs=2.3
Q ss_pred HHHHhh
Q 042177 16 LLVLAS 21 (123)
Q Consensus 16 llvlas 21 (123)
|+-.|.
T Consensus 57 Lt~~A~ 62 (140)
T 2byk_A 57 LAGAAY 62 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 3
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=56.21 E-value=1.7 Score=33.41 Aligned_cols=9 Identities=11% Similarity=-0.049 Sum_probs=4.5
Q ss_pred ccccccccC
Q 042177 77 YATCKLYNN 85 (123)
Q Consensus 77 yskgK~~~d 85 (123)
|=+|...++
T Consensus 215 yf~g~~~d~ 223 (264)
T 2zd7_A 215 YYAEAQRDL 223 (264)
T ss_dssp HHHHHHHTT
T ss_pred Hhccccccc
Confidence 445655543
No 4
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=40.05 E-value=6 Score=36.88 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 042177 87 TSTPESES 94 (123)
Q Consensus 87 dSd~eSdS 94 (123)
+|++||++
T Consensus 682 ~s~e~d~e 689 (956)
T 4aco_A 682 SSDESSTE 689 (956)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 5
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=24.40 E-value=19 Score=29.43 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=11.3
Q ss_pred cccchhhhh-ccc-cccccccCCC
Q 042177 66 HAAPLVNAT-VNY-ATCKLYNNCT 87 (123)
Q Consensus 66 ~A~Pi~N~~-~~y-skgK~~~dSd 87 (123)
+++|+.++. +.+ -.+++.++.+
T Consensus 342 iv~PLf~~~~~a~l~P~~~~~~~~ 365 (420)
T 1so2_A 342 IVGPLCNSYDAAGLLPGQWLEAEE 365 (420)
T ss_dssp THHHHHHHHHHTTCSCCEECC---
T ss_pred HHHHHHHHHHHhhhCchhhhhccc
Confidence 678998863 233 4445554433
No 6
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=14.64 E-value=13 Score=30.84 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhhccccccccccCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCC
Q 042177 70 LVNATVNYATCKLYNNCTSTPESESESEPDPDAESESETESESESESESEPD 121 (123)
Q Consensus 70 i~N~~~~yskgK~~~dSdSd~eSdSESEseSDSESeSESdseSdSesDSEsd 121 (123)
|+---|.|=+|......+++-+.|.+.+.+..++++.+.|+++|.+.+.+.+
T Consensus 352 IiP~AV~yftGea~~~e~ed~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~ 403 (417)
T 2ayu_A 352 LIPRAVDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDD 403 (417)
T ss_dssp TTTTHHHHHHSHHHHHHHC---------------------------------
T ss_pred ccccHHHHhccccccccccccccccccccccccccccccccccccccccccc
No 7
>2r28_C Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform; protein-peptide complex, acetylation, calcium, methylation; 1.86A {Homo sapiens} PDB: 2jzi_B
Probab=13.50 E-value=66 Score=17.96 Aligned_cols=9 Identities=33% Similarity=0.940 Sum_probs=0.0
Q ss_pred hhHHHHHHH
Q 042177 3 RITKMFNVL 11 (123)
Q Consensus 3 ritkmfnvl 11 (123)
|+.+||.+|
T Consensus 17 kmsRmf~vL 25 (26)
T 2r28_C 17 KMARVFSVL 25 (26)
T ss_pred HHHHHHHHc
No 8
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=12.20 E-value=46 Score=29.16 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC---CCCCCCCCcccccccccccccCCCCCCC
Q 042177 85 NCTSTPESESE---SEPDPDAESESETESESESESESEPDNL 123 (123)
Q Consensus 85 dSdSd~eSdSE---SEseSDSESeSESdseSdSesDSEsd~L 123 (123)
++|.+++.+.+ .+...+.+++.+++++++++++++++.+
T Consensus 292 ~~~~~dd~~~~~~~~~~~~~~~~~~~d~~~~~~dd~~~de~~ 333 (649)
T 3tj1_A 292 DLDDDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDIIEGM 333 (649)
T ss_dssp ------------------------------------------
T ss_pred cccccccchhhccccccccccccccccccccccccccccccc
No 9
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=11.91 E-value=28 Score=23.24 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCCCCCcccccCccccccccccchhheeccchhhhcccccccc
Q 042177 25 GHNSNDEDIFKQPQVRDQGERGVSKVVTAGLGLIGNALLSPHA 67 (123)
Q Consensus 25 ghnsndedifkqpqvrdqgergvskvvtaglgligna~~~~~A 67 (123)
||++..-+....|+..+ -.|..-+||.|-|.||-++...++
T Consensus 2 ~~~~~~~~~~~~~~~~~--l~~~~ilVtGatG~iG~~l~~~L~ 42 (236)
T 3e8x_A 2 GSSHHHHHHSSGRENLY--FQGMRVLVVGANGKVARYLLSELK 42 (236)
T ss_dssp ---------------------CCEEEEETTTSHHHHHHHHHHH
T ss_pred CcccccccccccccccC--cCCCeEEEECCCChHHHHHHHHHH
No 10
>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M* 1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M* 1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M* 1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ...
Probab=11.67 E-value=98 Score=25.45 Aligned_cols=36 Identities=42% Similarity=0.655 Sum_probs=0.0
Q ss_pred cccccCccccccccccchhheecc-----------chhhhccccccc
Q 042177 31 EDIFKQPQVRDQGERGVSKVVTAG-----------LGLIGNALLSPH 66 (123)
Q Consensus 31 edifkqpqvrdqgergvskvvtag-----------lgligna~~~~~ 66 (123)
..||.|-|||...+.||.--...- +|.||||..-|+
T Consensus 4 qnift~vqv~~~~~~g~~~~~~~~~r~~~~~~~~~~g~~gd~q~Gpi 50 (307)
T 1rzh_M 4 QNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPI 50 (307)
T ss_dssp CCSSCSSEEECSCCCCCCTTCCGGGBCCCCCBCHHHHTTSCCBBCCC
T ss_pred cceeEEeeccCCCCCCCCCCCCCcccccccchHHHHHhhcccccccE
Done!