Query 042177
Match_columns 123
No_of_seqs 15 out of 17
Neff 1.5
Searched_HMMs 13730
Date Mon Mar 25 05:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042177.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042177hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eysm_ f.26.1.1 (M:) M (mediu 49.8 2.8 0.0002 32.8 1.4 37 31-67 4-51 (318)
2 d2j8cm1 f.26.1.1 (M:1-303) M ( 38.8 6 0.00044 30.6 1.8 37 31-67 4-51 (303)
3 d1t2aa_ c.2.1.2 (A:) GDP-manno 23.7 6.9 0.0005 25.7 -0.3 14 51-64 6-19 (347)
4 d1eq2a_ c.2.1.2 (A:) ADP-L-gly 22.7 7.5 0.00054 24.3 -0.3 14 50-63 3-16 (307)
5 d1t6na_ c.37.1.19 (A:) Spliceo 20.0 7.4 0.00054 25.4 -0.8 20 58-77 47-66 (207)
6 d2i5nm1 f.26.1.1 (M:1-323) M ( 18.9 16 0.0012 28.3 1.0 36 31-67 4-50 (323)
7 d1veca_ c.37.1.19 (A:) DEAD bo 17.4 9.5 0.00069 24.8 -0.7 19 58-76 49-67 (206)
8 d1n2sa_ c.2.1.2 (A:) dTDP-6-de 17.3 11 0.00083 23.4 -0.3 14 50-63 4-17 (298)
9 d2h7ja1 d.3.1.1 (A:1-217) (Pro 17.3 18 0.0013 22.6 0.7 12 37-48 14-25 (217)
10 d1wrba1 c.37.1.19 (A:164-401) 16.8 9.4 0.00068 25.6 -0.9 20 58-77 67-86 (238)
No 1
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=49.84 E-value=2.8 Score=32.83 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=26.9
Q ss_pred cccccCccccccccccchh-------heec----cchhhhcccccccc
Q 042177 31 EDIFKQPQVRDQGERGVSK-------VVTA----GLGLIGNALLSPHA 67 (123)
Q Consensus 31 edifkqpqvrdqgergvsk-------vvta----glgligna~~~~~A 67 (123)
..||.|-|||-..+.||.- .-.. =+|.||||.+-|+-
T Consensus 4 qnift~vqv~~~~~~g~~~~~~~~~r~~~~~~~~~~g~~g~aqvGP~Y 51 (318)
T d1eysm_ 4 QNIFTAVQVRAPAYPGVPLPKGNLPRIGRPIFSYWLGKIGDAQIGPIY 51 (318)
T ss_dssp CSSSCSSCEECSCCCCSCCCSSCCCCCSCCBCCTTHHHHSCCCBCCCC
T ss_pred ccceeeeeccCCCCCCCCCCCCccccccCcchHHHHHhhcCcccCCEe
Confidence 4699999999887777652 2222 28999999987763
No 2
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=38.85 E-value=6 Score=30.64 Aligned_cols=37 Identities=41% Similarity=0.599 Sum_probs=27.2
Q ss_pred cccccCccccccccccchhhe-----------eccchhhhcccccccc
Q 042177 31 EDIFKQPQVRDQGERGVSKVV-----------TAGLGLIGNALLSPHA 67 (123)
Q Consensus 31 edifkqpqvrdqgergvskvv-----------taglgligna~~~~~A 67 (123)
..||.|-|||-..+-||..-. .-=+|.||||.+-|+-
T Consensus 4 qnift~vqv~~~~~~g~~~~~~~~~r~~~~~~~~~~g~~g~aqiGPiY 51 (303)
T d2j8cm1 4 QNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIY 51 (303)
T ss_dssp CSSSCSCEEECSCCCCCCTTCCGGGBCCCCCBCHHHHTTSCCBBCCCB
T ss_pred ccceeeeeccCCCCCCCCCCCCcchhcCCccHHHHHHHhcccccCCEe
Confidence 469999999988777765321 2247999999988763
No 3
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.72 E-value=6.9 Score=25.73 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=11.3
Q ss_pred eeccchhhhccccc
Q 042177 51 VTAGLGLIGNALLS 64 (123)
Q Consensus 51 vtaglgligna~~~ 64 (123)
||.|.|+||-.++.
T Consensus 6 VTG~tGfIG~~l~~ 19 (347)
T d1t2aa_ 6 ITGITGQDGSYLAE 19 (347)
T ss_dssp EETTTSHHHHHHHH
T ss_pred EecCCcHHHHHHHH
Confidence 89999999976543
No 4
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}
Probab=22.74 E-value=7.5 Score=24.35 Aligned_cols=14 Identities=43% Similarity=0.935 Sum_probs=11.7
Q ss_pred heeccchhhhcccc
Q 042177 50 VVTAGLGLIGNALL 63 (123)
Q Consensus 50 vvtaglgligna~~ 63 (123)
+||.|.|+||..+.
T Consensus 3 LITGgsGfIGs~lv 16 (307)
T d1eq2a_ 3 IVTGGAGFIGSNIV 16 (307)
T ss_dssp EEETTTSHHHHHHH
T ss_pred EEecCccHHHHHHH
Confidence 58999999998754
No 5
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.00 E-value=7.4 Score=25.44 Aligned_cols=20 Identities=5% Similarity=-0.099 Sum_probs=15.8
Q ss_pred hhcccccccccchhhhhccc
Q 042177 58 IGNALLSPHAAPLVNATVNY 77 (123)
Q Consensus 58 igna~~~~~A~Pi~N~~~~y 77 (123)
-|..||++|.+|+++.+...
T Consensus 47 TGsGKTla~~lp~l~~~~~~ 66 (207)
T d1t6na_ 47 SGMGKTAVFVLATLQQLEPV 66 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCC
T ss_pred cccccccccccceeeeeccc
Confidence 45679999999999876543
No 6
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=18.94 E-value=16 Score=28.35 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=23.2
Q ss_pred cccccCccccccccccch-----------hheeccchhhhcccccccc
Q 042177 31 EDIFKQPQVRDQGERGVS-----------KVVTAGLGLIGNALLSPHA 67 (123)
Q Consensus 31 edifkqpqvrdqgergvs-----------kvvtaglgligna~~~~~A 67 (123)
..||.|-|||-. +.||. ....-=+|.||||..-|+-
T Consensus 4 qniftqvqv~gp-~~~~~~~~~~~~r~~~~~~~~~lG~~G~aQvGPiY 50 (323)
T d2i5nm1 4 QTIYTQIQARGP-HITVSGEWGDNDRVGKPFYSYWLGKIGDAQIGPIY 50 (323)
T ss_dssp GGTSCSSBEECC-CCCCCCSSCGGGEECCCEECTTHHHHSCSEECCEE
T ss_pred ccceeeeeecCC-CCCCCCCCCcccccCCcchhhHHHhhcccccCCEE
Confidence 469999999863 32321 1122238999999887763
No 7
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.44 E-value=9.5 Score=24.85 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=15.2
Q ss_pred hhcccccccccchhhhhcc
Q 042177 58 IGNALLSPHAAPLVNATVN 76 (123)
Q Consensus 58 igna~~~~~A~Pi~N~~~~ 76 (123)
-|-.||++|.+|+++.+..
T Consensus 49 TGsGKTlayllP~l~~~~~ 67 (206)
T d1veca_ 49 NGTGKSGAYLIPLLERLDL 67 (206)
T ss_dssp SSSTTHHHHHHHHHHHCCT
T ss_pred Cccccccccccchhhcccc
Confidence 3667999999999987543
No 8
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}
Probab=17.35 E-value=11 Score=23.42 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=11.6
Q ss_pred heeccchhhhcccc
Q 042177 50 VVTAGLGLIGNALL 63 (123)
Q Consensus 50 vvtaglgligna~~ 63 (123)
+||.|-|+||.++.
T Consensus 4 LItG~tGfiG~~l~ 17 (298)
T d1n2sa_ 4 LLFGKTGQVGWELQ 17 (298)
T ss_dssp EEECTTSHHHHHHH
T ss_pred EEECCCCHHHHHHH
Confidence 57888999998764
No 9
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.29 E-value=18 Score=22.61 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.3
Q ss_pred ccccccccccch
Q 042177 37 PQVRDQGERGVS 48 (123)
Q Consensus 37 pqvrdqgergvs 48 (123)
+.|||||..|-.
T Consensus 14 tpV~dQG~cGsC 25 (217)
T d2h7ja1 14 TEVKYQGSCGAC 25 (217)
T ss_dssp CCCCBCTTSBCH
T ss_pred CCCccCCCchHH
Confidence 679999999965
No 10
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=16.75 E-value=9.4 Score=25.61 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.0
Q ss_pred hhcccccccccchhhhhccc
Q 042177 58 IGNALLSPHAAPLVNATVNY 77 (123)
Q Consensus 58 igna~~~~~A~Pi~N~~~~y 77 (123)
-|..||++|.+|+++-++..
T Consensus 67 TGsGKTlayllp~l~~l~~~ 86 (238)
T d1wrba1 67 TGSGKTAAFLIPIINHLVCQ 86 (238)
T ss_dssp TTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCcceeeHHHHHHHHHhc
Confidence 46789999999999988754
Done!