Query 042179
Match_columns 215
No_of_seqs 132 out of 912
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 2.7E-45 5.8E-50 315.2 20.0 169 1-171 62-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 5.1E-44 1.1E-48 306.7 17.5 167 1-169 61-236 (236)
3 cd01951 lectin_L-type legume l 100.0 6.4E-36 1.4E-40 253.8 19.3 158 1-170 55-223 (223)
4 cd07308 lectin_leg-like legume 99.8 3E-17 6.4E-22 139.2 18.1 151 1-169 58-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 99.6 1.3E-13 2.8E-18 118.2 18.6 156 1-170 60-223 (225)
6 cd06901 lectin_VIP36_VIPL VIP3 99.5 2.8E-12 6.1E-17 111.4 18.8 158 1-175 58-227 (248)
7 cd06903 lectin_EMP46_EMP47 EMP 99.2 1.2E-09 2.6E-14 93.1 17.0 145 1-169 59-212 (215)
8 PF03388 Lectin_leg-like: Legu 99.2 1.2E-09 2.7E-14 93.7 15.1 150 1-167 60-224 (229)
9 KOG3838 Mannose lectin ERGIC-5 98.6 1.4E-06 3.1E-11 79.4 15.1 154 2-170 93-255 (497)
10 cd06900 lectin_VcfQ VcfQ bacte 98.5 2E-05 4.4E-10 68.1 18.6 163 3-168 61-253 (255)
11 KOG3839 Lectin VIP36, involved 98.3 1.1E-05 2.4E-10 72.2 13.2 173 2-190 111-298 (351)
12 cd00110 LamG Laminin G domain; 61.0 69 0.0015 24.1 12.8 25 97-123 76-100 (151)
13 smart00282 LamG Laminin G doma 60.6 69 0.0015 24.0 10.6 26 96-123 57-82 (135)
14 cd00152 PTX Pentraxins are pla 56.7 22 0.00047 29.5 4.8 100 98-207 87-195 (201)
15 smart00159 PTX Pentraxin / C-r 54.2 36 0.00079 28.3 5.7 100 96-207 85-195 (206)
16 KOG3514 Neurexin III-alpha [Si 34.9 4.8E+02 0.01 28.2 10.9 80 54-149 884-963 (1591)
17 smart00560 LamGL LamG-like jel 27.6 87 0.0019 23.9 3.6 23 101-123 61-83 (133)
18 KOG3514 Neurexin III-alpha [Si 27.0 8.4E+02 0.018 26.5 11.7 49 96-149 517-565 (1591)
19 PF13619 KTSC: KTSC domain 20.4 1.2E+02 0.0025 20.2 2.7 18 106-123 7-24 (60)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=2.7e-45 Score=315.20 Aligned_cols=169 Identities=40% Similarity=0.699 Sum_probs=149.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCCccccccCCCCCC-CccceEEEEEccccc-cc-CCCCCeeEE
Q 042179 1 MISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRSPHV-GSVSQLALELDTFMN-EF-DPDANHIGI 77 (215)
Q Consensus 1 ~FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~~~g-~~~~~vAVEFDT~~N-~~-Dp~~nHVgI 77 (215)
+|+|+|+|+|.+.....+||||||||+|.+.. +.+..|++|||.+..+.+ ...+.|||||||++| ++ ||+.+||||
T Consensus 62 sFst~F~F~i~~~~~~~~gdGlAF~i~~~~~~-~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigI 140 (236)
T cd06899 62 SFSTSFSFSITPPNPSLGGDGLAFFLAPTDSL-PPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGI 140 (236)
T ss_pred eEEEEEEEEEEcCCCCCCCCeEEEEEecCCCC-CCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEE
Confidence 69999999999866678999999999998753 346889999999876554 234599999999999 56 999999999
Q ss_pred ecCCCCCceeeeecCCcCcccCCCCeEEEEEEEcCCccEEEEEEEecC--CCceeeeeeeeecCCCCCCeEEEEEEeecC
Q 042179 78 DATNMSKPITVTSLNGTGIDLKSGRNIKVQIDYDGRTKMLYVSMAYSE--YPLGRILEKPIIMSDVVPSSVYVGFTAATG 155 (215)
Q Consensus 78 dvns~~~S~~t~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~--~p~~plls~~vdL~~~l~~~v~VGFSAsTG 155 (215)
|+|++. |..+..+....+.|.+|+.++|||+||+.+++|+|+|+... +|..|+|+..+||+++|+++|||||||+||
T Consensus 141 dvn~~~-S~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG 219 (236)
T cd06899 141 DVNSLV-SVKAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTG 219 (236)
T ss_pred EcCCcc-cceeeccccccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcC
Confidence 999998 88777775445568999999999999999999999999853 788999999999999999999999999999
Q ss_pred CcccceEEEEEEEEee
Q 042179 156 DFSESHQVLDWTFTTM 171 (215)
Q Consensus 156 ~~~e~h~I~sWsF~s~ 171 (215)
...|.|+|++|+|++.
T Consensus 220 ~~~~~h~i~sWsF~s~ 235 (236)
T cd06899 220 LLTELHYILSWSFSSN 235 (236)
T ss_pred CCcceEEEEEEEEEcC
Confidence 9999999999999875
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=5.1e-44 Score=306.73 Aligned_cols=167 Identities=36% Similarity=0.638 Sum_probs=143.2
Q ss_pred CcEEEEEEEEeeC--CCCCCCCeeEEEEccCCCCCCCCCCCccccccCCCCCCC-ccceEEEEEccccc-cc-CCCCCee
Q 042179 1 MISTTFTIRISQY--PNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRSPHVG-SVSQLALELDTFMN-EF-DPDANHI 75 (215)
Q Consensus 1 ~FsT~FtF~I~~~--~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~~~g~-~~~~vAVEFDT~~N-~~-Dp~~nHV 75 (215)
+|+|+|+|+|... ....+||||||||+|++ ..+.++.|++|||.+...++. +.+.||||||||+| ++ ||+.+||
T Consensus 61 sF~t~F~f~i~~~~~~~~~~~dGlAFvi~~~~-~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHI 139 (236)
T PF00139_consen 61 SFSTSFSFSITNGPGSSNNGGDGLAFVIQPDP-NLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHI 139 (236)
T ss_dssp EEEEEEEEEEEESSSSSSS-BEEEEEEEEETT-SSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEE
T ss_pred eeeeEEEEEEeccCCCCccCCCceEEEEecCc-ccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEE
Confidence 5999999999643 56789999999999998 455567899999998765543 46699999999999 55 9999999
Q ss_pred EEecCCCCCceeeeecC---CcCcccCCCCeEEEEEEEcCCccEEEEEEEec-CCCceeeeeeeeecCCCCCCeEEEEEE
Q 042179 76 GIDATNMSKPITVTSLN---GTGIDLKSGRNIKVQIDYDGRTKMLYVSMAYS-EYPLGRILEKPIIMSDVVPSSVYVGFT 151 (215)
Q Consensus 76 gIdvns~~~S~~t~~~~---~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~-~~p~~plls~~vdL~~~l~~~v~VGFS 151 (215)
||++|++. +..+.++. .....|.+|+.++|||+||+.+++|+|+|+.. .+|..|+++..+||+++|+++||||||
T Consensus 140 gI~~n~~~-s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~l~~~vdL~~~l~~~v~vGFs 218 (236)
T PF00139_consen 140 GIDVNSVV-SNKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNSSKPSSPVLSVNVDLSAVLPEQVYVGFS 218 (236)
T ss_dssp EEEESSSS-ESEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETTTTSEEEEEEEE--HHHHSCSEEEEEEE
T ss_pred EEECCCCc-ccccccccccccccccccCCcEEEEEEEEcCCccEEEEEEecccCCCcceeEEEEEchHHhcCCCcEEEEE
Confidence 99999998 77765442 13568999999999999999999999999996 689999999999999999999999999
Q ss_pred eecCCcccceEEEEEEEE
Q 042179 152 AATGDFSESHQVLDWTFT 169 (215)
Q Consensus 152 AsTG~~~e~h~I~sWsF~ 169 (215)
||||...|.|.|++|+|+
T Consensus 219 asTG~~~~~h~I~sW~F~ 236 (236)
T PF00139_consen 219 ASTGGSYQTHDILSWSFS 236 (236)
T ss_dssp EEESSSSEEEEEEEEEEE
T ss_pred eecCCCcceEEEEEEEeC
Confidence 999999999999999995
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=6.4e-36 Score=253.76 Aligned_cols=158 Identities=30% Similarity=0.492 Sum_probs=130.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCC--ccccccCCCCCCCccceEEEEEccccc-cc-CCCCCeeE
Q 042179 1 MISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDG--SFLGIMSRSPHVGSVSQLALELDTFMN-EF-DPDANHIG 76 (215)
Q Consensus 1 ~FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G--~~LGl~~~~~~g~~~~~vAVEFDT~~N-~~-Dp~~nHVg 76 (215)
+|+|+|+|+|.... ..+||||||+|++.+.. +.+.+| ++||+. +..+.+|||||||+| ++ ||+.+|||
T Consensus 55 ~F~~~F~f~i~~~~-~~~gdG~aF~l~~~~~~-~~~~~g~~~~lG~~------~~~~~~aVefDT~~N~~~~dp~~~hig 126 (223)
T cd01951 55 DFTTTFKFYLGTKG-TNGADGIAFVLQNDPAG-ALGGGGGGGGLGYG------GIGNSVAVEFDTYKNDDNNDPNGNHIS 126 (223)
T ss_pred CEEEEEEEEEeCCC-CCCCCcEEEEEecCCCC-ccccCCCCCccCcc------ccCCeEEEEEeccccCCCCCCCCCEEE
Confidence 59999999999754 67899999999998743 334444 788874 346799999999999 54 99999999
Q ss_pred EecCCCCCce-------eeeecCCcCcccCCCCeEEEEEEEcCCccEEEEEEEecCCCceeeeeeeeecCCCCCCeEEEE
Q 042179 77 IDATNMSKPI-------TVTSLNGTGIDLKSGRNIKVQIDYDGRTKMLYVSMAYSEYPLGRILEKPIIMSDVVPSSVYVG 149 (215)
Q Consensus 77 Idvns~~~S~-------~t~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~~vdL~~~l~~~v~VG 149 (215)
|++|+.. +. ....++ .....|+.++|||+|++.+++|+|+|.....|..|+++.++||...++++||||
T Consensus 127 i~~n~~~-~~~~~~~~~~~~~~~---~~~~~g~~~~v~I~Y~~~~~~L~v~l~~~~~~~~~~l~~~~~l~~~~~~~~yvG 202 (223)
T cd01951 127 IDVNGNG-NNTALATSLGSASLP---NGTGLGNEHTVRITYDPTTNTLTVYLDNGSTLTSLDITIPVDLIQLGPTKAYFG 202 (223)
T ss_pred EEcCCCC-CCcccccccceeeCC---CccCCCCEEEEEEEEeCCCCEEEEEECCCCccccccEEEeeeecccCCCcEEEE
Confidence 9999986 32 222221 222239999999999999999999999755567789999999999999999999
Q ss_pred EEeecCCcccceEEEEEEEEe
Q 042179 150 FTAATGDFSESHQVLDWTFTT 170 (215)
Q Consensus 150 FSAsTG~~~e~h~I~sWsF~s 170 (215)
||||||...|.|+|++|+|++
T Consensus 203 FTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 203 FTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred EEcccCCCcceeEEEEEEecC
Confidence 999999999999999999963
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.77 E-value=3e-17 Score=139.20 Aligned_cols=151 Identities=25% Similarity=0.390 Sum_probs=102.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCCccccccCCCCCCCccceEEEEEcccccccCCCCCeeEEecC
Q 042179 1 MISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRSPHVGSVSQLALELDTFMNEFDPDANHIGIDAT 80 (215)
Q Consensus 1 ~FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~~~g~~~~~vAVEFDT~~N~~Dp~~nHVgIdvn 80 (215)
+|+|+|+|+|.... ..+||||||+|+++.. ..|+.+|..+ .-+.+||||||++|. +-...+|.+.+|
T Consensus 58 ~F~~~f~F~i~~~~-~~~gdG~af~~~~~~~-----~~g~~~G~~~------~~~Glai~fdt~~n~-~~~~p~i~~~~N 124 (218)
T cd07308 58 DFEIEVEFSIHGGS-GLGGDGFAFWYTEEPG-----SDGPLFGGPD------KFKGLAIFFDTYDND-GKGFPSISVFLN 124 (218)
T ss_pred CEEEEEEEEEeCCC-CCCCCEEEEEEECCCC-----CCCcccccCC------CCCEEEEEEEcCCCC-CCCCCeEEEEEe
Confidence 69999999998753 5789999999999652 2455666643 346999999999984 223457766665
Q ss_pred CCCCcee------eeecCCcCcccCC-CCeEEEEEEEcCCccEEEEEEEecCCCceeeeeeeeecCC-CCCCeEEEEEEe
Q 042179 81 NMSKPIT------VTSLNGTGIDLKS-GRNIKVQIDYDGRTKMLYVSMAYSEYPLGRILEKPIIMSD-VVPSSVYVGFTA 152 (215)
Q Consensus 81 s~~~S~~------t~~~~~~~~~l~~-G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~~vdL~~-~l~~~v~VGFSA 152 (215)
.-..+.. ...+....+..++ ++..+++|.|+ .+.|.|.+.... +.... ...++.. .+++.+|+||||
T Consensus 125 dg~~~~~~~~d~~~~~~~~c~~~~~~~~~~~~~~I~y~--~~~l~v~i~~~~-~~~~~--~c~~~~~~~l~~~~y~G~sA 199 (218)
T cd07308 125 DGTKSYDYETDGEKLELASCSLKFRNSNAPTTLRISYL--NNTLKVDITYSE-GNNWK--ECFTVEDVILPSQGYFGFSA 199 (218)
T ss_pred CCCceecccCCCccccccceeEecccCCCCeEEEEEEE--CCEEEEEEeCCC-CCCcc--EEEEcCCcccCCCCEEEEEe
Confidence 4221211 0111111122222 68999999999 568999987521 11111 2333333 467889999999
Q ss_pred ecCCcccceEEEEEEEE
Q 042179 153 ATGDFSESHQVLDWTFT 169 (215)
Q Consensus 153 sTG~~~e~h~I~sWsF~ 169 (215)
+||...+.|+|++|.+.
T Consensus 200 ~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 200 QTGDLSDNHDILSVHTY 216 (218)
T ss_pred ccCCCcCcEEEEEEEee
Confidence 99999999999999864
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.59 E-value=1.3e-13 Score=118.17 Aligned_cols=156 Identities=19% Similarity=0.290 Sum_probs=103.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCCccccccCCCCCCCccceEEEEEcccccccCCCCCeeEEecC
Q 042179 1 MISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRSPHVGSVSQLALELDTFMNEFDPDANHIGIDAT 80 (215)
Q Consensus 1 ~FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~~~g~~~~~vAVEFDT~~N~~Dp~~nHVgIdvn 80 (215)
+|...|+|+|.... ..+||||||.++.... ..|+.+|..+ .-+.+||.|||+.|.-......|.+.+|
T Consensus 60 ~w~ie~~Fri~g~~-~~~gdG~a~W~t~~~~-----~~G~~~G~~~------~f~Gl~I~~Dt~~n~~~~~~p~i~~~~N 127 (225)
T cd06902 60 NWEVEVTFRVTGRG-RIGADGLAIWYTKERG-----EEGPVFGSSD------KWNGVGIFFDSFDNDGKKNNPAILVVGN 127 (225)
T ss_pred CEEEEEEEEEecCC-CCCCCEEEEEEECCCC-----CCCCccCCCC------cccEEEEEEECCCCCCCCCCcEEEEEEC
Confidence 58899999998643 3578999999998752 2466676643 2459999999998722223357766665
Q ss_pred CCCCceeee-e-----cCCcCcccC-CCCeEEEEEEEcCCccEEEEEEEecCCCceeeeeeeeecCCC-CCCeEEEEEEe
Q 042179 81 NMSKPITVT-S-----LNGTGIDLK-SGRNIKVQIDYDGRTKMLYVSMAYSEYPLGRILEKPIIMSDV-VPSSVYVGFTA 152 (215)
Q Consensus 81 s~~~S~~t~-~-----~~~~~~~l~-~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~~vdL~~~-l~~~v~VGFSA 152 (215)
.-....... . ++.-....+ .....+++|.|... .|+|.++...++........+++..+ ||...|+||||
T Consensus 128 DGt~~yd~~~D~~~~~~~~C~~~~rn~~~p~~~rI~Y~~~--~l~V~~d~~~~~~~~~~~~Cf~~~~v~LP~~~yfGiSA 205 (225)
T cd06902 128 DGTKSYDHQNDGLTQALGSCLRDFRNKPYPVRAKITYYQN--VLTVSINNGFTPNKDDYELCTRVENMVLPPNGYFGVSA 205 (225)
T ss_pred CCCeeccccCCCcccccceEEEeccCCCCCeEEEEEEECC--eEEEEEeCCcCCCCCcccEEEecCCeeCCCCCEEEEEe
Confidence 422011110 0 110011222 24678999999994 69998875333333333445555553 67889999999
Q ss_pred ecCCcccceEEEEEEEEe
Q 042179 153 ATGDFSESHQVLDWTFTT 170 (215)
Q Consensus 153 sTG~~~e~h~I~sWsF~s 170 (215)
+||...+.|+|++|.+.+
T Consensus 206 ~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 206 ATGGLADDHDVLSFLTFS 223 (225)
T ss_pred cCCCCCCcEeEEEEEEec
Confidence 999999999999999864
No 6
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.50 E-value=2.8e-12 Score=111.40 Aligned_cols=158 Identities=19% Similarity=0.275 Sum_probs=99.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCCccccccCCCCCCCccceEEEEEcccccc---cCCCCCeeEE
Q 042179 1 MISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRSPHVGSVSQLALELDTFMNE---FDPDANHIGI 77 (215)
Q Consensus 1 ~FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~~~g~~~~~vAVEFDT~~N~---~Dp~~nHVgI 77 (215)
+|+++|+|+|.+.....+||||||++..... ..|..+|..+ .-+.+||-|||+.|. .....+-|.+
T Consensus 58 ~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~~-----~~G~~fG~~~------~f~Gl~I~~Dt~~n~~~~~~~~~P~i~~ 126 (248)
T cd06901 58 DWEMHVHFKVHGSGKNLFGDGFAIWYTKERM-----QPGPVFGSKD------NFHGLAIFFDTYSNQNGEHEHVHPYISA 126 (248)
T ss_pred CEEEEEEEEEeCCCCCCCCCEEEEEEEcCCC-----ccCcccccCC------CCceEEEEEECCCCCCCcccCCCceEEE
Confidence 5999999999986556789999999998752 2345555532 235899999999982 1122334544
Q ss_pred ecCCCCCceeee------ecCCcCcccC-CCCeEEEEEEEcCCccEEEEEEEecCCCc-eeeeeeeeecCC-CCCCeEEE
Q 042179 78 DATNMSKPITVT------SLNGTGIDLK-SGRNIKVQIDYDGRTKMLYVSMAYSEYPL-GRILEKPIIMSD-VVPSSVYV 148 (215)
Q Consensus 78 dvns~~~S~~t~------~~~~~~~~l~-~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~-~plls~~vdL~~-~l~~~v~V 148 (215)
.+|.-....... .+..-...++ .+....++|.|... .|+|.++...+.. ..|+ .... .||...|+
T Consensus 127 ~~NDGt~~yd~~~Dg~~~~~~~C~~~~rn~~~~t~~rI~Y~~~--~l~v~vd~~~~~~w~~Cf----~~~~v~LP~~~yf 200 (248)
T cd06901 127 MVNNGSLSYDHDRDGTHTELAGCSAPFRNKDHDTFVAIRYSKG--RLTVMTDIDGKNEWKECF----DVTGVRLPTGYYF 200 (248)
T ss_pred EEcCCCeeecccCCCchhhcCceeeeccCCCCCeEEEEEEECC--eEEEEEecCCCCceeeeE----EeCCeecCCCCEE
Confidence 444321021110 1110011222 34456899999975 5777776532211 2343 3333 35777999
Q ss_pred EEEeecCCcccceEEEEEEEEeecCCC
Q 042179 149 GFTAATGDFSESHQVLDWTFTTMPLPP 175 (215)
Q Consensus 149 GFSAsTG~~~e~h~I~sWsF~s~~~p~ 175 (215)
||||+||...+.|+|++-.+..-..|.
T Consensus 201 GiSA~Tg~~sd~hdIlsv~~~~l~~~~ 227 (248)
T cd06901 201 GASAATGDLSDNHDIISMKLYELDVEE 227 (248)
T ss_pred EEEecCCCCCCcEEEEEEEEecCcccc
Confidence 999999999999999998876654444
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.21 E-value=1.2e-09 Score=93.15 Aligned_cols=145 Identities=20% Similarity=0.226 Sum_probs=92.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCC-ccccccCCCCCCCccceEEEEEcccccccCCCCCeeEEec
Q 042179 1 MISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDG-SFLGIMSRSPHVGSVSQLALELDTFMNEFDPDANHIGIDA 79 (215)
Q Consensus 1 ~FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G-~~LGl~~~~~~g~~~~~vAVEFDT~~N~~Dp~~nHVgIdv 79 (215)
+|...|+|+|.... ..+||||||.+...+.. ..| ..+|-.+ .-+.+||.|||+.| ....|.+.+
T Consensus 59 ~w~ie~~Fri~G~~-~~~gdGla~W~t~~~~~----~~g~~~fG~~~------~f~Gl~I~~Dt~~n----~~p~i~~~~ 123 (215)
T cd06903 59 EWTIEWTFRSTGPE-GRSGGGLNFWLVKDGNA----DVGTSSIYGPS------KFDGLQLLIDNNGG----SGGSLRGFL 123 (215)
T ss_pred CEEEEEEEEecccC-CcCCCEEEEEEECCCcc----cCCccccCCCC------CCcEEEEEEECCCC----CCceEEEEE
Confidence 48899999998743 37899999999987521 112 3333322 23489999999987 223454444
Q ss_pred CCCCCceeeee-----cCCcCcc-cCCCCeEEEEEEEcCCccEEEEEEEecCCCceeeeee-eeecCCCCC-CeEEEEEE
Q 042179 80 TNMSKPITVTS-----LNGTGID-LKSGRNIKVQIDYDGRTKMLYVSMAYSEYPLGRILEK-PIIMSDVVP-SSVYVGFT 151 (215)
Q Consensus 80 ns~~~S~~t~~-----~~~~~~~-l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~-~vdL~~~l~-~~v~VGFS 151 (215)
|.-........ ++.=... ...+...+++|.|....+.|+|.++. +.|+.. .+. || ...|+|||
T Consensus 124 NDGt~~yd~~~d~~~~~g~C~~~~rn~~~p~~iri~Y~~~~~~l~v~vd~-----~~Cf~~~~v~----lP~~~y~fGiS 194 (215)
T cd06903 124 NDGSKDYKNEDVDSLAFGSCLFAYQDSGVPSTIRLSYDALNSLFKVQVDN-----RLCFQTDKVQ----LPQGGYRFGIT 194 (215)
T ss_pred CCCCeeccccCCcccccceeeEeccCCCCCEEEEEEEECCCCEEEEEECC-----CEEEecCCee----cCCCCCEEEEE
Confidence 43210111111 1100112 34466889999999977789998864 235543 233 45 55679999
Q ss_pred eecCCcccceEEEEEEEE
Q 042179 152 AATGDFSESHQVLDWTFT 169 (215)
Q Consensus 152 AsTG~~~e~h~I~sWsF~ 169 (215)
|+||...+.|+|++-...
T Consensus 195 AaTg~~~d~hdIl~~~~~ 212 (215)
T cd06903 195 AANADNPESFEILKLKVW 212 (215)
T ss_pred EcCCCCCCcEEEEEEEEe
Confidence 999999999999987653
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.16 E-value=1.2e-09 Score=93.69 Aligned_cols=150 Identities=26% Similarity=0.389 Sum_probs=92.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCCccccccCCCCCCCccceEEEEEccccccc---CCCCCeeEE
Q 042179 1 MISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRSPHVGSVSQLALELDTFMNEF---DPDANHIGI 77 (215)
Q Consensus 1 ~FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~~~g~~~~~vAVEFDT~~N~~---Dp~~nHVgI 77 (215)
+|+..|+|+|........||||||.+..... ..|..+|..+. -+.+||=||||.|.- .-....|.+
T Consensus 60 ~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~~-----~~G~~fG~~~~------f~Gl~i~idt~~N~~~~~~~~~p~i~~ 128 (229)
T PF03388_consen 60 NWEIEFTFRISGQEKGLGGDGMAFWYTKDPG-----SDGPVFGGPDK------FDGLGIFIDTYDNDEGGHKRGFPYISA 128 (229)
T ss_dssp EEEEEEEEEEESS-SSS-S-EEEEEEESSSS-----SSCSBTTB-SS-------EEEEEEEEES-TTCTTCTSTSSEEEE
T ss_pred CEEEEEEEEEeccccCcCCCeEEEEEEcCcc-----ccccccCCCcc------cceEEEEEEcccCCCcccccccceEEE
Confidence 4889999999986446689999999998652 25666776432 358999999999822 123456766
Q ss_pred ecCCCCCceeeee------cCCcCcccC-CCCeEEEEEEEcCCccEEEEEEEe----cCCCceeeeee-eeecCCCCCCe
Q 042179 78 DATNMSKPITVTS------LNGTGIDLK-SGRNIKVQIDYDGRTKMLYVSMAY----SEYPLGRILEK-PIIMSDVVPSS 145 (215)
Q Consensus 78 dvns~~~S~~t~~------~~~~~~~l~-~G~~~~v~I~Yd~~~~~L~V~l~~----~~~p~~plls~-~vdL~~~l~~~ 145 (215)
.+|.-........ ++.-...++ .+...+++|.|... .|+|.++. ....-..|+.. .|+ ||+.
T Consensus 129 ~~NDGt~~~~~~~dg~~~~~~~C~~~~rn~~~p~~~ri~Y~~~--~l~v~id~~~~~~~~~~~~Cf~~~~v~----LP~~ 202 (229)
T PF03388_consen 129 MLNDGTKSYDHDNDGKDQSLGSCSADYRNSDVPTRIRISYSKN--TLTVSIDSNYLKNQDDWELCFTTDGVD----LPEG 202 (229)
T ss_dssp EEEESSS---GGGTTTTT-SEEEE---BTESSEEEEEEEEETT--EEEEEEETSCCSECCTTEEEEEESTEE----GGSS
T ss_pred EecCCCccccccccCcccccccceeccCcCCCCEEEEEEEECC--eEEEEEecccccCCcCCcEEEEcCCee----cCCC
Confidence 6654220111110 000012233 35577999999996 57777763 12223456653 344 4667
Q ss_pred EEEEEEeecCCcccceEEEEEE
Q 042179 146 VYVGFTAATGDFSESHQVLDWT 167 (215)
Q Consensus 146 v~VGFSAsTG~~~e~h~I~sWs 167 (215)
.|+||||+||...+.|+|++-.
T Consensus 203 ~yfGvSA~Tg~~~d~hdi~s~~ 224 (229)
T PF03388_consen 203 YYFGVSAATGELSDNHDILSVK 224 (229)
T ss_dssp BEEEEEEEESSSGGEEEEEEEE
T ss_pred CEEEEEecCCCCCCcEEEEEEE
Confidence 8999999999999999999864
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.4e-06 Score=79.42 Aligned_cols=154 Identities=20% Similarity=0.346 Sum_probs=99.2
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCCccccccCCCCCCCccceEEEEEcccccccCCCCCeeEEecCC
Q 042179 2 ISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRSPHVGSVSQLALELDTFMNEFDPDANHIGIDATN 81 (215)
Q Consensus 2 FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~~~g~~~~~vAVEFDT~~N~~Dp~~nHVgIdvns 81 (215)
|...-+|+|.... .-+|||||+.-.... |.-|.-+|=.+ .=+.++|=||.+.|+-.-++.-|.+..|.
T Consensus 93 weVev~~rVtGrG-RiGAdGlaiWYt~~~-----G~~GpVfGg~d------~WnGigiffDSfdnD~qknnP~Is~~lnd 160 (497)
T KOG3838|consen 93 WEVEVQFRVTGRG-RIGADGLAIWYTRGR-----GHVGPVFGGLD------SWNGIGIFFDSFDNDGQKNNPAISVLLND 160 (497)
T ss_pred ceEEEEEEecccc-cccCCceEEEEecCC-----Ccccccccccc------cccceEEEeecccccCCcCCccEEEEecC
Confidence 4567788998743 679999999998643 23344444322 12489999999988222244567777665
Q ss_pred CCCceeeee------cCCcCcccCCC-CeEEEEEEEcCCccEEEEEEEecCCCceeeeeeeeecCCC-CCCeEEEEEEee
Q 042179 82 MSKPITVTS------LNGTGIDLKSG-RNIKVQIDYDGRTKMLYVSMAYSEYPLGRILEKPIIMSDV-VPSSVYVGFTAA 153 (215)
Q Consensus 82 ~~~S~~t~~------~~~~~~~l~~G-~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~~vdL~~~-l~~~v~VGFSAs 153 (215)
-..+..... +++-.-++++. -...++|+|-. ++|+|.+...-.|. +-....++..++ |+...|+|.||+
T Consensus 161 Gt~~ydh~~DGasQ~LssCqrDFRNkPyPvRarItY~~--nvLtv~innGmtp~-d~yE~C~rve~~~lp~nGyFGvSAA 237 (497)
T KOG3838|consen 161 GTIPYDHPGDGASQGLSSCQRDFRNKPYPVRARITYYG--NVLTVMINNGMTPS-DDYEFCVRVENLLLPPNGYFGVSAA 237 (497)
T ss_pred CcccccCCCccHHHHHHHhhHHhccCCCCceEEEEEec--cEEEEEEcCCCCCC-CCcceeEeccceeccCCCeeeeeec
Confidence 321221111 11001123322 25689999988 48999998744554 234455666665 689999999999
Q ss_pred cCCcccceEEEEEE-EEe
Q 042179 154 TGDFSESHQVLDWT-FTT 170 (215)
Q Consensus 154 TG~~~e~h~I~sWs-F~s 170 (215)
||+....|+|+++. |+.
T Consensus 238 TGgLADDHDVl~FltfsL 255 (497)
T KOG3838|consen 238 TGGLADDHDVLSFLTFSL 255 (497)
T ss_pred ccccccccceeeeEEeee
Confidence 99999999999985 443
No 10
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=98.51 E-value=2e-05 Score=68.09 Aligned_cols=163 Identities=18% Similarity=0.271 Sum_probs=93.4
Q ss_pred EEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCCccccccCCC-CCCCccc-eEEEEEccccc-cc--CC-------
Q 042179 3 STTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRS-PHVGSVS-QLALELDTFMN-EF--DP------- 70 (215)
Q Consensus 3 sT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~-~~g~~~~-~vAVEFDT~~N-~~--Dp------- 70 (215)
..+|.+-.... ...+||||||||....-...++..|+.|||.-+. ...+... .++|-||-|-| .. |.
T Consensus 61 ~veFd~yayg~-~g~GADGia~vLsDasv~p~~G~fGGsLGYa~~~~~~~GfaGGwLGiGlDEyGNFsn~~eg~~~~~g~ 139 (255)
T cd06900 61 EVEFDYYAYGS-GGNGADGVALVLSDASVTPQAGAFGGSLGYAQRNDGVPGFAGGWLGIGLDEYGNFSNPNEGRNGFSGR 139 (255)
T ss_pred EEEEEEEEecC-CCCCCceEEEEEeCCCcCCcCCCcCcccccccccCCCCccccceEEEEEeccccccCCCCCccCCccc
Confidence 34566655544 4789999999999755333468889999998664 3344555 99999999988 21 22
Q ss_pred CCCeeEEecCCCCC-ce---e-eeecCCcCcccCC----CCeEEEEEEEcCCc---cEEEEEEEecCCC-ceeeeeeeee
Q 042179 71 DANHIGIDATNMSK-PI---T-VTSLNGTGIDLKS----GRNIKVQIDYDGRT---KMLYVSMAYSEYP-LGRILEKPII 137 (215)
Q Consensus 71 ~~nHVgIdvns~~~-S~---~-t~~~~~~~~~l~~----G~~~~v~I~Yd~~~---~~L~V~l~~~~~p-~~plls~~vd 137 (215)
..+-|+|--.+... .. . +..++ ..++.+. ...|.=+|.-|+.. ..|+|.-+..... -.+++ ..+|
T Consensus 140 r~~sV~vRGsg~g~~gY~yl~gt~~~~-~~id~~~~~~~~~~hrY~i~Ids~~~~~~~vsV~R~~~~gg~~~~~I-~~~d 217 (255)
T cd06900 140 RPQSVTVRGSGSGYTGYKYITGTGVLP-PGIDNNSTSTPAPGHRYRITIDSTNGDNAWLSVERDIGNGGAYFVVI-LTFD 217 (255)
T ss_pred ccceEEEECCCCCCcCceEecccCCCC-cccccCCCCCCCCceEEEEEEecCCCCceEEEEEEEccCCceeEEee-ccee
Confidence 12455555322110 00 0 01111 1111111 12355566666552 2455544432111 12222 2333
Q ss_pred c---C--CCCCCeEEEEEEeecCCcccceEEEEEEE
Q 042179 138 M---S--DVVPSSVYVGFTAATGDFSESHQVLDWTF 168 (215)
Q Consensus 138 L---~--~~l~~~v~VGFSAsTG~~~e~h~I~sWsF 168 (215)
+ . .-+|+..+++||+|||.+...|+|-..+.
T Consensus 218 ~~~~~~q~avP~~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 218 ALAEQNQDAIPENFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred eccccCCCCCCccEEEEEEecCCCcccceeecceEe
Confidence 2 2 45689999999999999999999976654
No 11
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1.1e-05 Score=72.21 Aligned_cols=173 Identities=21% Similarity=0.321 Sum_probs=105.7
Q ss_pred cEEEEEEEEeeCCCCCCCCeeEEEEccCCCCCCCCCCCccccccCCCCCCCccceEEEEEcccccccCCC---CCeeEEe
Q 042179 2 ISTTFTIRISQYPNSGAGDGMTFIFAPDTNPSPLHSDGSFLGIMSRSPHVGSVSQLALELDTFMNEFDPD---ANHIGID 78 (215)
Q Consensus 2 FsT~FtF~I~~~~~~~~gDGlAFvl~~~~~~~~~~~~G~~LGl~~~~~~g~~~~~vAVEFDT~~N~~Dp~---~nHVgId 78 (215)
|.-.+.|++..+....-|||||+.+.-+... .|..+|-.+. -+.+||-.|||.|..-|. ..-|.+.
T Consensus 111 wev~v~fkv~~~s~~lfgdG~Aiw~t~Er~q-----~GPvFG~~dk------F~GL~vfidtY~n~~g~~~~v~P~isvm 179 (351)
T KOG3839|consen 111 WEVLVHFKVHGQSKNLFGDGMAIWYTKERAQ-----PGPVFGSKDK------FTGLAVFIDTYGNHNGPHEHVFPYISVM 179 (351)
T ss_pred eeEEEEEEEecCCCcccccceEEEeeccccc-----CCCCCCCccc------ceeEEEEEeccCCcCCCcccceeeEEEE
Confidence 5678899999887788999999999987632 4777777543 347999999998833121 2234444
Q ss_pred cCCCCCcee------eeecCCcCcccCCCC-eEEEEEEEcCCccEEEEEEEecCCCceeeeeeeeecCCC-CCCeEEEEE
Q 042179 79 ATNMSKPIT------VTSLNGTGIDLKSGR-NIKVQIDYDGRTKMLYVSMAYSEYPLGRILEKPIIMSDV-VPSSVYVGF 150 (215)
Q Consensus 79 vns~~~S~~------t~~~~~~~~~l~~G~-~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~~vdL~~~-l~~~v~VGF 150 (215)
+|....|.. .+.+..-...+++.. ...+.|.|+. ++|++..+...+ ..+....+|.++ +|.--|+|+
T Consensus 180 v~~gs~sYD~~~Dg~~tel~gc~a~~rn~~~dt~~~iry~~--~~l~~~~dl~~~---~~~~~c~~~n~v~lp~g~~fg~ 254 (351)
T KOG3839|consen 180 VNIGSLSYDHSKDGTHTELAGCTANFRNLPHDTLVVIRYEK--KTLSISIDLEGP---NEWIDCFSLNNVELPLGYFFGV 254 (351)
T ss_pred eccCCcccccCCCCCccccccceeeeccCCCcceeEEEecC--CceEEEEecCCC---ceeeeeeeecceecccceEEee
Confidence 432110111 111111012223221 2357799999 567766665322 134556777776 677889999
Q ss_pred EeecCCcccceEEEEEEE-EeecC--C-CCCccccccccccccc
Q 042179 151 TAATGDFSESHQVLDWTF-TTMPL--P-PDSLKSRKLINSSSCT 190 (215)
Q Consensus 151 SAsTG~~~e~h~I~sWsF-~s~~~--p-~~~~~~~~~~~~~~~~ 190 (215)
||+||+..+.|+|.+-.+ ..... + ....++.+|.-.+..+
T Consensus 255 SasTGdlSd~HdivS~kl~~L~d~~~~~~eei~~d~l~p~~~~~ 298 (351)
T KOG3839|consen 255 SASTGDLSDSHDIVSLKLFELTDIHVEGEEEIDRDNLSPSASTA 298 (351)
T ss_pred eeccCccchhhHHHHhhhhhhhcccCCCccccchhhcccccccc
Confidence 999999999999998653 22222 1 1244555555444433
No 12
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=60.95 E-value=69 Score=24.08 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.0
Q ss_pred ccCCCCeEEEEEEEcCCccEEEEEEEe
Q 042179 97 DLKSGRNIKVQIDYDGRTKMLYVSMAY 123 (215)
Q Consensus 97 ~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 123 (215)
.+.||++|++.|.+++. .+.++++.
T Consensus 76 ~v~dg~Wh~v~i~~~~~--~~~l~VD~ 100 (151)
T cd00110 76 PLNDGQWHSVSVERNGR--SVTLSVDG 100 (151)
T ss_pred ccCCCCEEEEEEEECCC--EEEEEECC
Confidence 58899999999999984 67777765
No 13
>smart00282 LamG Laminin G domain.
Probab=60.56 E-value=69 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.9
Q ss_pred cccCCCCeEEEEEEEcCCccEEEEEEEe
Q 042179 96 IDLKSGRNIKVQIDYDGRTKMLYVSMAY 123 (215)
Q Consensus 96 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 123 (215)
..+.||++|++.|.++.. .+++.++.
T Consensus 57 ~~~~dg~WH~v~i~~~~~--~~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNGR--RVTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeCC--EEEEEECC
Confidence 568899999999999975 56666664
No 14
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=56.73 E-value=22 Score=29.45 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=56.6
Q ss_pred cCCCCeEEEEEEEcCCccEEEEEEEecCCCceeeeeeeeecCCCCCCeEEEEEE---------eecCCcccceEEEEEEE
Q 042179 98 LKSGRNIKVQIDYDGRTKMLYVSMAYSEYPLGRILEKPIIMSDVVPSSVYVGFT---------AATGDFSESHQVLDWTF 168 (215)
Q Consensus 98 l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~~vdL~~~l~~~v~VGFS---------AsTG~~~e~h~I~sWsF 168 (215)
..+|+.+++-++||+.+.+++++++........ +.....+. -.....+|=. ..-.-..+.-++.-|.-
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~-~~~~~~~~--~~g~l~lG~~q~~~gg~~~~~~~f~G~I~~v~iw~~ 163 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNGKLSVRKS-LKKGYTVG--PGGSIILGQEQDSYGGGFDATQSFVGEISDVNMWDS 163 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECCEEecccc-ccCCCEEC--CCCeEEEeecccCCCCCCCCCcceEEEEceeEEEcc
Confidence 479999999999999999999999863221111 11110111 1123444411 11111123445666654
Q ss_pred EeecCCCCCccccccccccccccccccCccceeeeeeee
Q 042179 169 TTMPLPPDSLKSRKLINSSSCTSANNDNDFWMLLEYRFF 207 (215)
Q Consensus 169 ~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (215)
..+. ...+.|-....|..-|+-+ |..+.++..
T Consensus 164 ~Ls~-----~eI~~l~~~~~~~~Gnv~~--W~~~~~~~~ 195 (201)
T cd00152 164 VLSP-----EEIKNVYSEGGTLSGNILN--WRALNYEIN 195 (201)
T ss_pred cCCH-----HHHHHHHhcCCCCCCCEEe--chhhEEEEe
Confidence 3321 3445555567777778888 888877764
No 15
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=54.18 E-value=36 Score=28.31 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=55.6
Q ss_pred cccCCCCeEEEEEEEcCCccEEEEEEEecCCCceeeeee--eeecCCCCCCeEEEEE---------EeecCCcccceEEE
Q 042179 96 IDLKSGRNIKVQIDYDGRTKMLYVSMAYSEYPLGRILEK--PIIMSDVVPSSVYVGF---------TAATGDFSESHQVL 164 (215)
Q Consensus 96 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~--~vdL~~~l~~~v~VGF---------SAsTG~~~e~h~I~ 164 (215)
..+.+|+.|++-++||+.+.+++++++..... ...+.. .+.- .....+|= .+.-.-..+..++.
T Consensus 85 ~~~~~g~W~hvc~tw~~~~g~~~lyvnG~~~~-~~~~~~g~~i~~----~G~lvlGq~qd~~gg~f~~~~~f~G~i~~v~ 159 (206)
T smart00159 85 VPESDGKWHHICTTWESSSGIAELWVDGKPGV-RKGLAKGYTVKP----GGSIILGQEQDSYGGGFDATQSFVGEIGDLN 159 (206)
T ss_pred ccccCCceEEEEEEEECCCCcEEEEECCEEcc-cccccCCcEECC----CCEEEEEecccCCCCCCCCCcceeEEEeeeE
Confidence 45789999999999999999999999863211 111111 1111 12233332 11111122445666
Q ss_pred EEEEEeecCCCCCccccccccccccccccccCccceeeeeeee
Q 042179 165 DWTFTTMPLPPDSLKSRKLINSSSCTSANNDNDFWMLLEYRFF 207 (215)
Q Consensus 165 sWsF~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (215)
-|.-..+. ...+++-....|..-|+-+ |..+.|++.
T Consensus 160 iw~~~Ls~-----~eI~~l~~~~~~~~Gnv~~--W~~~~~~~~ 195 (206)
T smart00159 160 MWDSVLSP-----EEIKSVYKGSTFSIGNILN--WRALNYEVH 195 (206)
T ss_pred EecccCCH-----HHHHHHHcCCCCCCCCEEe--ccccEEEEe
Confidence 67543332 3445555444455566667 888888764
No 16
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=34.91 E-value=4.8e+02 Score=28.16 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=43.7
Q ss_pred cceEEEEEcccccccCCCCCeeEEecCCCCCceeeeecCCcCcccCCCCeEEEEEEEcCCccEEEEEEEecCCCceeeee
Q 042179 54 VSQLALELDTFMNEFDPDANHIGIDATNMSKPITVTSLNGTGIDLKSGRNIKVQIDYDGRTKMLYVSMAYSEYPLGRILE 133 (215)
Q Consensus 54 ~~~vAVEFDT~~N~~Dp~~nHVgIdvns~~~S~~t~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls 133 (215)
+.++|||.=.-+ =|--.|+.+-.++.+- .....|+|..+|+|.|.=|.. +.=.+.++. +.+...+.
T Consensus 884 ndfi~velvnG~-------ihYtfdlg~gp~~~k~----~sr~hlnDnrWHnV~I~rd~~-~~HtL~vD~--s~~t~~~~ 949 (1591)
T KOG3514|consen 884 NDFIAVELVNGY-------IHYTFDLGNGPTSMKG----PSRQHLNDNRWHNVLIYRDKT-NTHTLKVDN--SSTTQIID 949 (1591)
T ss_pred CceEEEEEeCcE-------EEEEEEcCCCcccccC----cccCcCccccceeEEEEcCCC-CceEEEecC--ceEEEEec
Confidence 459999974422 2444554321102221 124678999999999888844 444444432 33344454
Q ss_pred eeeecCCCCCCeEEEE
Q 042179 134 KPIIMSDVVPSSVYVG 149 (215)
Q Consensus 134 ~~vdL~~~l~~~v~VG 149 (215)
..++| -|..++|+|
T Consensus 950 g~~~l--~l~g~LyiG 963 (1591)
T KOG3514|consen 950 GAVNL--DLKGKLYIG 963 (1591)
T ss_pred Ccccc--ccccceecc
Confidence 44433 345677777
No 17
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=27.58 E-value=87 Score=23.85 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=21.4
Q ss_pred CCeEEEEEEEcCCccEEEEEEEe
Q 042179 101 GRNIKVQIDYDGRTKMLYVSMAY 123 (215)
Q Consensus 101 G~~~~v~I~Yd~~~~~L~V~l~~ 123 (215)
|+.+++.+.||+....|+++++.
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG 83 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNG 83 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECC
Confidence 89999999999998899999975
No 18
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=26.97 E-value=8.4e+02 Score=26.48 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=30.9
Q ss_pred cccCCCCeEEEEEEEcCCccEEEEEEEecCCCceeeeeeeeecCCCCCCeEEEE
Q 042179 96 IDLKSGRNIKVQIDYDGRTKMLYVSMAYSEYPLGRILEKPIIMSDVVPSSVYVG 149 (215)
Q Consensus 96 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~p~~plls~~vdL~~~l~~~v~VG 149 (215)
-..+||++|+|.+.=|+.+..+.|--...+ -..|--+..+|| .+.||+|
T Consensus 517 rkv~DGeWhhv~l~R~gR~gsvsVd~~~~d-f~tpG~s~iL~l----d~~mylG 565 (1591)
T KOG3514|consen 517 RKVNDGEWHHVDLQRDGRTGSVSVDAIKTD-FSTPGDSEILDL----DDPMYLG 565 (1591)
T ss_pred ccccCCceEEEEeeccCccceEEEeeeecC-ccCCCcceeEee----cCceeec
Confidence 467899999999999999888777432211 012223344444 4566666
No 19
>PF13619 KTSC: KTSC domain
Probab=20.44 E-value=1.2e+02 Score=20.20 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.7
Q ss_pred EEEEEcCCccEEEEEEEe
Q 042179 106 VQIDYDGRTKMLYVSMAY 123 (215)
Q Consensus 106 v~I~Yd~~~~~L~V~l~~ 123 (215)
..|.||..++.|.|....
T Consensus 7 ~~v~Yd~~~~~L~V~F~~ 24 (60)
T PF13619_consen 7 RSVGYDPETRTLEVEFKS 24 (60)
T ss_pred cEEeECCCCCEEEEEEcC
Confidence 469999999999999865
Done!