BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042181
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 7 PFYKQC------EGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHI 44
P ++C EG +V V TS S L GDVIVS D +H+
Sbjct: 265 PALRECLKVPTNEGVLVRRVEPTSDASKVLKEGDVIVSFDDLHV 308
>pdb|3I1E|A Chain A, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
Protein (Lin2157) From Listeria Innocua, Northeast
Structural Genomics Consortium Target Lkr136c
pdb|3I1E|B Chain B, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
Protein (Lin2157) From Listeria Innocua, Northeast
Structural Genomics Consortium Target Lkr136c
Length = 90
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 13 EGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWME 52
+G VL V P +G L GD+I +DG + Q++++
Sbjct: 2 DGVYVLSVKEDVPAAGILHAGDLITEIDGQSFKSSQEFID 41
>pdb|2KJK|A Chain A, Solution Structure Of The Second Domain Of The Listeria
Protein Lin2157, Northeast Structural Genomics
Consortium Target Lkr136b
Length = 100
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 13 EGTMVLDVPSTSPLSGYLSPGDVIVSLDGIHIHNEQDWME 52
+G VL V P +G L GD+I +DG + Q++++
Sbjct: 7 DGVYVLSVKEDVPAAGILHAGDLITEIDGQSFKSSQEFID 46
>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
pdb|3LLS|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
Length = 475
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 315 QVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRER 374
+ A + A W VT ++ S + HHG +V + +LL +DD+R
Sbjct: 275 ETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWD 334
Query: 375 RRLAVNIL 382
LAVN+L
Sbjct: 335 AVLAVNLL 342
>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
pdb|3M1L|B Chain B, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
Length = 432
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 315 QVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRER 374
+ A + A W VT ++ S + HHG +V + +LL +DD+R
Sbjct: 238 ETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWD 297
Query: 375 RRLAVNIL 382
LAVN+L
Sbjct: 298 AVLAVNLL 305
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 315 QVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRER 374
+ A + A W VT ++ S + HHG +V + +LL +DD+R
Sbjct: 254 ETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWD 313
Query: 375 RRLAVNIL 382
LAVN+L
Sbjct: 314 AVLAVNLL 321
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 315 QVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRER 374
+ A + A W VT ++ S + HHG +V + +LL +DD+R
Sbjct: 262 ETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWD 321
Query: 375 RRLAVNIL 382
LAVN+L
Sbjct: 322 AVLAVNLL 329
>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|B Chain B, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|C Chain C, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|D Chain D, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
Length = 446
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 315 QVAIDITVNAAWTRVTIVFGSNEHSTCIMSHHGVLTFYMVALKCRQKRRLLFKLDDSRER 374
+ A + A W VT ++ S + HHG +V + +LL +DD+R
Sbjct: 246 ETASKVGGTALWLDVTADDAVDKISEHLRDHHGGKADILVNNAGITRDKLLANMDDARWD 305
Query: 375 RRLAVNIL 382
LAVN+L
Sbjct: 306 AVLAVNLL 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,203,569
Number of Sequences: 62578
Number of extensions: 471176
Number of successful extensions: 1109
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 13
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)