BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042183
INFADMNSVSIEIEEASLLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPS
LLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALH
EAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR

High Scoring Gene Products

Symbol, full name Information P value
AT4G14390 protein from Arabidopsis thaliana 4.1e-06
AT4G05040 protein from Arabidopsis thaliana 3.8e-05
YAR1
Ankyrin-repeat containing, nucleocytoplasmic shuttling chaperone
gene from Saccharomyces cerevisiae 0.00013
AT1G03670 protein from Arabidopsis thaliana 0.00027

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042183
        (179 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2129685 - symbol:AT4G14390 "AT4G14390" species...   126  4.1e-06   1
TAIR|locus:2138391 - symbol:AT4G05040 "AT4G05040" species...   119  3.8e-05   1
SGD|S000006160 - symbol:YAR1 "Ankyrin-repeat containing, ...   108  0.00013   1
TAIR|locus:2020833 - symbol:AT1G03670 "AT1G03670" species...   113  0.00027   1


>TAIR|locus:2129685 [details] [associations]
            symbol:AT4G14390 "AT4G14390" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR002110 PROSITE:PS50088 SMART:SM00248
            EMBL:CP002687 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
            SUPFAM:SSF48403 PROSITE:PS50297 InterPro:IPR026961 Pfam:PF13962
            IPI:IPI00517064 RefSeq:NP_193175.2 UniGene:At.54317
            ProteinModelPortal:F4JVF4 SMR:F4JVF4 PRIDE:F4JVF4
            EnsemblPlants:AT4G14390.1 GeneID:827084 KEGG:ath:AT4G14390
            Uniprot:F4JVF4
        Length = 694

 Score = 126 (49.4 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 45/146 (30%), Positives = 69/146 (47%)

Query:    31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLI 90
             D  L  A   G+LE  K++  E     CP LLL+ N+ G +  L VAA  GH  IV   +
Sbjct:   133 DSILHLAVTWGHLELVKEIVCE-----CPRLLLEQNSSGQT-PLHVAAHSGHTTIVEAFV 186

Query:    91 -----ERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSA 145
                    A+L   E E +   +++  +K+ +TAL+ A+  +  ++   L   + D P+  
Sbjct:   187 ALVTFSSARLCNEESERMNPYVLK--DKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLG 244

Query:   146 NNYNKTPLCMVAEYEHSSHMVVAILK 171
             N Y  + L  VA       +V AILK
Sbjct:   245 NKYGVSSL-FVAINTGDVSLVKAILK 269


>TAIR|locus:2138391 [details] [associations]
            symbol:AT4G05040 "AT4G05040" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR002110 Pfam:PF00023
            PROSITE:PS50088 SMART:SM00248 EMBL:CP002687 Gene3D:1.25.40.20
            InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297
            InterPro:IPR026961 Pfam:PF13962 EMBL:AY049276 EMBL:BT030351
            EMBL:AK317522 IPI:IPI00526626 RefSeq:NP_001031584.1
            RefSeq:NP_001190679.1 RefSeq:NP_001190680.1 RefSeq:NP_567285.1
            RefSeq:NP_974514.1 UniGene:At.4061 ProteinModelPortal:Q94A85
            SMR:Q94A85 STRING:Q94A85 PRIDE:Q94A85 EnsemblPlants:AT4G05040.1
            EnsemblPlants:AT4G05040.2 EnsemblPlants:AT4G05040.3
            EnsemblPlants:AT4G05040.4 EnsemblPlants:AT4G05040.5 GeneID:825846
            KEGG:ath:AT4G05040 InParanoid:Q94A85 ProtClustDB:CLSN2689356
            Genevestigator:Q94A85 Uniprot:Q94A85
        Length = 572

 Score = 119 (46.9 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 46/146 (31%), Positives = 71/146 (48%)

Query:    31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLI 90
             D  L  AA  G+LE  K++  E     CP L+L++N K D   L VAA  GH  IV  L+
Sbjct:   116 DSVLHLAARWGHLELVKNIISE-----CPCLVLELNFK-DQLPLHVAAHAGHSAIVEALV 169

Query:    91 ERA-----KLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSA 145
                     +L + + E L   ++R  +K  +TALH A+  + +++   L  E+ +  +  
Sbjct:   170 ASVTFFSDRLAEEDRERLNPYVLR--DKYGNTALHLAIEGRYMEMAASLVNENQNASFLE 227

Query:   146 NNYNKTPLCMVAEYEHSSHMVVAILK 171
             NN   + L M  E    + +V  ILK
Sbjct:   228 NNEGISSLYMAVEAGDVT-LVKEILK 252


>SGD|S000006160 [details] [associations]
            symbol:YAR1 "Ankyrin-repeat containing, nucleocytoplasmic
            shuttling chaperone" species:4932 "Saccharomyces cerevisiae"
            [GO:0005634 "nucleus" evidence=IGI;IDA] [GO:0000056 "ribosomal
            small subunit export from nucleus" evidence=IGI;IMP] [GO:0051082
            "unfolded protein binding" evidence=IMP] [GO:0034599 "cellular
            response to oxidative stress" evidence=IMP] [GO:0032880 "regulation
            of protein localization" evidence=IMP;IPI] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0042274 "ribosomal small subunit biogenesis"
            evidence=IGI;IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] InterPro:IPR002110 PROSITE:PS50088 SMART:SM00248
            SGD:S000006160 GO:GO:0005634 GO:GO:0005737 GO:GO:0034599
            GO:GO:0051082 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
            SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0032880 GO:GO:0006970
            EMBL:BK006949 EMBL:Z67751 KO:K06867 GO:GO:0000056 GO:GO:0042274
            EMBL:M21813 EMBL:U34385 EMBL:Z73595 EMBL:AY558138 PIR:S61025
            RefSeq:NP_015085.1 ProteinModelPortal:P46683 SMR:P46683
            IntAct:P46683 MINT:MINT-2493177 STRING:P46683 PaxDb:P46683
            PeptideAtlas:P46683 EnsemblFungi:YPL239W GeneID:855837
            KEGG:sce:YPL239W CYGD:YPL239w eggNOG:NOG293391 HOGENOM:HOG000111159
            OMA:TIKDDIT OrthoDB:EOG42FWSV NextBio:980410 ArrayExpress:P46683
            Genevestigator:P46683 GermOnline:YPL239W Uniprot:P46683
        Length = 200

 Score = 108 (43.1 bits), Expect = 0.00013, P = 0.00013
 Identities = 35/112 (31%), Positives = 58/112 (51%)

Query:    38 AAAGNLEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKFGHCDIVSVLIERAKLL 96
             A AG+L+  KD+    +    P LL     ++ DS +L +AA  GH + V  ++E     
Sbjct:    20 ARAGDLDSLKDIFTTLV---SPELLSTCKESESDSTALHMAAANGHIETVRYILETVSRA 76

Query:    97 QHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNY 148
              +  E+L++  +  +NK  +TALH A  +  +DVVK+L  E    P+  N +
Sbjct:    77 -NSAEDLKA-FVNEVNKTGNTALHWASLNGKLDVVKLLCDEYEADPFIRNKF 126


>TAIR|locus:2020833 [details] [associations]
            symbol:AT1G03670 "AT1G03670" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR002110 PROSITE:PS50088 SMART:SM00248
            EMBL:CP002684 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
            SUPFAM:SSF48403 PROSITE:PS50297 InterPro:IPR027001
            PANTHER:PTHR24177 InterPro:IPR027002 InterPro:IPR026961
            PANTHER:PTHR24177:SF1 Pfam:PF13962 IPI:IPI01019841
            RefSeq:NP_171863.1 UniGene:At.51471 ProteinModelPortal:F4I2G1
            SMR:F4I2G1 EnsemblPlants:AT1G03670.1 GeneID:839438
            KEGG:ath:AT1G03670 OMA:ISMEQAT Uniprot:F4I2G1
        Length = 616

 Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
 Identities = 39/126 (30%), Positives = 64/126 (50%)

Query:    52 EEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM 111
             E I+   P+LL  VN  G++ +L VAA+ G  +IV +L+   + +  E    ++  I   
Sbjct:    89 EFIISTFPNLLQNVNLMGET-TLHVAARAGSLNIVEILV---RFIT-ESSSYDA-FIAAK 142

Query:   112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK 171
             +K   TALH A+  K V+V   L     D  +  NN   +PL M  E  +   +V+ +L+
Sbjct:   143 SKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHE-LVLKMLE 201

Query:   172 NCTSVS 177
             + +S S
Sbjct:   202 SSSSPS 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       179   0.00089  109 3  11 22  0.42    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  146 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.83u 0.11s 18.94t   Elapsed:  00:00:01
  Total cpu time:  18.83u 0.11s 18.94t   Elapsed:  00:00:02
  Start:  Mon May 20 22:13:27 2013   End:  Mon May 20 22:13:29 2013

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