BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042183
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 30/147 (20%)
Query: 18 LLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ------VNAKGDS 71
LL+NN +PNL A AG+ P ARE +E +LL + + KG +
Sbjct: 99 LLENNA-------NPNL--ATTAGH-TPLHIAAREGHVETVLALLEKEASQACMTKKGFT 148
Query: 72 RSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVV 131
L VAAK+G + +L+ER H + ++G+ T LH AV H +D+V
Sbjct: 149 -PLHVAAKYGKVRVAELLLERDA---HPNAAGKNGL---------TPLHVAVHHNNLDIV 195
Query: 132 KILTREDLDYPYSANNYNKTPLCMVAE 158
K+L P+S TPL + A+
Sbjct: 196 KLLLPRG-GSPHSPAWNGYTPLHIAAK 221
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 25 ISQLQIDPNLFKAAAAGNLE------PFKDMAREEILEICPSLL---LQVNAKG--DSRS 73
+ L I NL + A+ N+ P AR E+ LL +VNAK D
Sbjct: 24 MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP 83
Query: 74 LLVAAKFGHCDIVSVLIER------AKLLQHEDEELES--GMIRM-------------MN 112
L AA+ GH ++V +L+E A H + + G + M
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 113 KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPL 153
K+ T LH A + V V ++L D +P +A TPL
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPL 183
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNA--KGDSRSLLVAAKFGHCDIVS 87
ID L +AA GNL ++ C + VN K S +L A GH DIV
Sbjct: 73 IDNPLHEAAKRGNLSWLRE---------CLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123
Query: 88 VLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL 134
L + + + NK TALH A + D+V++L
Sbjct: 124 XLFTQPNI-----------ELNQQNKLGDTALHAAAWKGYADIVQLL 159
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 45 PFKDMAREEILEICPSLL---LQVNAK-GDSRSLL-VAAKFGHCDIVSVLIERAKLLQHE 99
P AR LE+ LL VNAK + R+ L +AA+ GH ++V +L+E + +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 100 DEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY 159
D K T LH A + ++VVK+L D N +TPL + A
Sbjct: 65 D------------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARN 111
Query: 160 EH 161
H
Sbjct: 112 GH 113
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSS 163
N + HT LH AV HK ++V++L D +TPL + E + +S
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSS 163
N + HT LH AV HK ++V++L D +TPL + E + +S
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 18/79 (22%)
Query: 62 LLQVNAKGDSR------SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEK 115
LL NAK + + L+ A GH ++V++L LQH I N +
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL------LQH------GASINASNNKG 185
Query: 116 HTALHEAVFHKIVDVVKIL 134
+TALHEAV K V VV++L
Sbjct: 186 NTALHEAVIEKHVFVVELL 204
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 69 GDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIV 128
G ++ A ++ H D+V +L+ + I + + E++ LH A F V
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGS------------DINIRDNEENICLHWAAFSGCV 157
Query: 129 DVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS 177
D+ +IL D ++ N + +PL +A E+ VV L + V+
Sbjct: 158 DIAEILLAAKCDL-HAVNIHGDSPL-HIAARENRYDCVVLFLSRDSDVT 204
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 101 EELESGM-IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY 159
E +E+G +R +KE T LH A + +D+VK + + N TPL
Sbjct: 27 ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86
Query: 160 EHSSHMVVAILK 171
H S MVV ++K
Sbjct: 87 GHLS-MVVQLMK 97
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 74 LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
L +AA FGH +IV VL++ + D E HT LH A +++V++
Sbjct: 84 LRLAALFGHLEIVEVLLKNGADVNAND------------MEGHTPLHLAAMFGHLEIVEV 131
Query: 134 LTREDLDYPYSANNYNKTPL 153
L + D + + + KT
Sbjct: 132 LLKNGADV-NAQDKFGKTAF 150
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 24/147 (16%)
Query: 29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAK-GDSRSLL-VAAKFGHCDIV 86
++ L +AA GN + KD+ VNA D R+ L AAK GH +IV
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENGA---------DVNASDSDGRTPLHYAAKEGHKEIV 53
Query: 87 SVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN 146
+LI + + +D + T LH A ++VK+L + D + +
Sbjct: 54 KLLISKGADVNAKDS------------DGRTPLHYAAKEGHKEIVKLLISKGADV-NAKD 100
Query: 147 NYNKTPLCMVAEYEHSSHMVVAILKNC 173
+ +TPL A+ H + + I K
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGA 127
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related
Protein From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related
Protein From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 32 PN--LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVL 89
PN LF + NL+ F ++ E+ LE +LL + G+S+ + +G+ D V+
Sbjct: 16 PNTLLFVHGSGCNLKIFGEL--EKYLEDYNCILLDLKGHGESKGQCPSTVYGYIDNVANF 73
Query: 90 IERAKLLQHE 99
I +++ +H+
Sbjct: 74 ITNSEVTKHQ 83
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 71 SRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDV 130
+ LL AA+ G D V +L + D HT LH A +++
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNAND------------YWGHTPLHLAAMLGHLEI 62
Query: 131 VKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS 177
V++L + D + N +TPL + A +H +V +LK+ V+
Sbjct: 63 VEVLLKNGADVNATGNT-GRTPLHLAAWADHLE-IVEVLLKHGADVN 107
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 45 PFKDMAREEILEICPSLL---LQVNAK-GDSRSLL-VAAKFGHCDIVSVLIERAKLLQHE 99
P AR LE+ LL VNAK + R+ L +AA+ GH ++V +L+E + +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 100 DEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL 134
D K T LH A + ++VVK+L
Sbjct: 65 D------------KNGRTPLHLAARNGHLEVVKLL 87
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 63 LQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEA 122
+ V +GD L +AA GH DIV KLLQ++ + I +N+ + LH A
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQ------KLLQYKAD------INAVNEHGNVPLHYA 112
Query: 123 VF 124
F
Sbjct: 113 CF 114
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 63 LQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEA 122
+ V +GD L +AA GH DIV KLLQ++ + I +N+ + LH A
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQ------KLLQYKAD------INAVNEHGNVPLHYA 107
Query: 123 VF 124
F
Sbjct: 108 CF 109
>pdb|1OXJ|A Chain A, Crystal Structure Of The Smaug Rna Binding Domain
Length = 173
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 43 LEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE 101
+E FK+M EE+L I L V KG S K C + L ERA +L ++
Sbjct: 23 IELFKNMTYEEMLLITEDFLQSVGVTKGASH------KLALC--IDKLKERANILNRVEQ 74
Query: 102 ELESGMIRM 110
EL SG + +
Sbjct: 75 ELLSGQMEL 83
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 34 LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNA-KGDSRSLL-VAAKFGHCDIVSVLIE 91
L AAA G+LE I+E+ VNA D + L +AAK+GH +IV VL++
Sbjct: 84 LHLAAATGHLE---------IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 92 RAKLLQHEDE 101
+ +D+
Sbjct: 135 HGADVNAQDK 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,798,450
Number of Sequences: 62578
Number of extensions: 174812
Number of successful extensions: 462
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 38
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)