BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042184
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPV 72
L+L P+ P+ L +L + ++ + +P + GLE+L L +R LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 73 EIRNLKKLRYLMV 85
I +L +LR L +
Sbjct: 145 SIASLNRLRELSI 157
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKN-TLVRE 69
++ L LE + LP + +L NL L +RN + + +I +L LE LDL+ T +R
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 70 LP 71
P
Sbjct: 245 YP 246
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKN 64
I N ++VLDL + LP +GS L Y + V +P GNL L+ L ++
Sbjct: 266 IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325
Query: 65 TLVRELPVEIRNLKKLRYLMVY 86
+ + ++I K + L+ Y
Sbjct: 326 NPLEKQFLKILTEKSVTGLIFY 347
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVR 68
+L LDL + + + + L L L + +P I NL L LDL + +
Sbjct: 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283
Query: 69 ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCI 119
LP E+ + +L+Y Y+F + L FG+L NLQ L +
Sbjct: 284 SLPAELGSCFQLKYF----YFF-------DNMVTTLPWEFGNLCNLQFLGV 323
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLK-NTLVREL 70
+LD D +P G+ + NL+++SL N ++ IPK IG L L L L N+ +
Sbjct: 469 ILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 71 PVEIRNLKKLRYL 83
P E+ + + L +L
Sbjct: 528 PAELGDCRSLIWL 540
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 23 YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKL 80
Y+P+ +GS+ L L+L + + IP +G+L GL LDL N L +P + L L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLK-NTLVREL 70
+LD D +P G+ + NL+++SL N ++ IPK IG L L L L N+ +
Sbjct: 472 ILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 71 PVEIRNLKKLRYLMVYQYYF 90
P E+ + + L +L + F
Sbjct: 531 PAELGDCRSLIWLDLNTNLF 550
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 23 YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDL-KNTLVRELPVEIRNLKKL 80
Y+P+ +GS+ L L+L + + IP +G+L GL LDL N L +P + L L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 13 VLDLEDAPVVYLPEG-VGSLLNLHYLSLRNKKV-KIIPKSIGNLLGLESLDLKNTLVREL 70
+LDL++ + + +G +L NLH L L N K+ KI P + L+ LE L L ++EL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 71 PVEIRNLKKLRYLMVYQYYFT 91
P ++ K L+ L V++ T
Sbjct: 116 PEKMP--KTLQELRVHENEIT 134
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 13 VLDLEDAPVVYLPEG-VGSLLNLHYLSLRNKKV-KIIPKSIGNLLGLESLDLKNTLVREL 70
+LDL++ + + +G +L NLH L L N K+ KI P + L+ LE L L ++EL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 71 PVEIRNLKKLRYLMVYQYYFT 91
P ++ K L+ L V++ T
Sbjct: 116 PEKMP--KTLQELRVHENEIT 134
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 24 LPEGV-GSLLNLHYLSLRNKKVKIIPKSI-GNLLGLESLDLKNTLVRELPVEIRN-LKKL 80
LP+GV L NL YL+L + +++ +PK + L L LDL ++ LP + + L +L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 81 RYLMVYQ 87
+ L +YQ
Sbjct: 184 KDLRLYQ 190
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 8 FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
F +K LDL + ++ S + ++SLRN K+ +I K++ LE DL+
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 8 FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLK 63
F +K LDL + ++ S + ++SLRN K+ +I K++ LE DL+
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245
>pdb|3BHW|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Magnetospirillum Magneticum
pdb|3BHW|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Magnetospirillum Magneticum
Length = 209
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 206 PKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLAGT 241
P++ I GL L G+TED R + N+LQ R GT
Sbjct: 20 PESRIIAGLLLEGVTEDQWRHAIEVENVLQRRSPGT 55
>pdb|3C85|A Chain A, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|B Chain B, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|C Chain C, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|D Chain D, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
Length = 183
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 48 PKSIGNLLGLESLDLKN-----TLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAA 102
P GN LE L +N + E P ++ L + + Y +GS A
Sbjct: 114 PHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHVCK 173
Query: 103 KLHPGFGSL 111
+L P F S+
Sbjct: 174 QLEPQFTSI 182
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 220 TEDPIRVLHALPNLLQLRLAGTYNYELFHFEAENW 254
T P R+ PNL L+L G +F+ ENW
Sbjct: 62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENW 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,293,826
Number of Sequences: 62578
Number of extensions: 279997
Number of successful extensions: 730
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 24
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)