Query 042184
Match_columns 261
No_of_seqs 164 out of 2355
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:38:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.7E-25 8E-30 205.8 12.7 202 4-218 159-367 (968)
2 PLN00113 leucine-rich repeat r 99.9 6.8E-25 1.5E-29 204.0 12.6 232 1-244 180-442 (968)
3 KOG0444 Cytoskeletal regulator 99.8 9.7E-24 2.1E-28 177.0 -5.3 228 5-247 74-308 (1255)
4 KOG0444 Cytoskeletal regulator 99.8 4.9E-23 1.1E-27 172.8 -2.7 233 1-239 95-347 (1255)
5 KOG0472 Leucine-rich repeat pr 99.8 4.2E-23 9.1E-28 164.6 -10.8 223 2-242 84-309 (565)
6 KOG4194 Membrane glycoprotein 99.8 1E-20 2.2E-25 157.5 0.6 237 4-243 168-429 (873)
7 KOG4194 Membrane glycoprotein 99.8 7.1E-21 1.5E-25 158.4 -0.9 227 4-243 144-378 (873)
8 KOG0472 Leucine-rich repeat pr 99.7 1.3E-20 2.8E-25 150.5 -8.5 225 4-246 63-291 (565)
9 PLN03210 Resistant to P. syrin 99.7 1E-16 2.2E-21 150.8 13.3 54 186-239 847-901 (1153)
10 KOG0617 Ras suppressor protein 99.7 2.7E-19 5.9E-24 127.6 -5.1 162 28-205 29-194 (264)
11 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-17 3.1E-22 136.6 2.9 236 4-246 18-294 (319)
12 cd00116 LRR_RI Leucine-rich re 99.7 5.7E-17 1.2E-21 133.0 5.1 231 4-241 46-318 (319)
13 PLN03210 Resistant to P. syrin 99.7 5.6E-16 1.2E-20 145.9 11.1 53 186-239 779-833 (1153)
14 KOG0617 Ras suppressor protein 99.7 5.4E-18 1.2E-22 121.1 -2.1 157 5-172 29-186 (264)
15 KOG0618 Serine/threonine phosp 99.6 4.9E-18 1.1E-22 148.1 -4.6 125 108-239 379-508 (1081)
16 KOG0618 Serine/threonine phosp 99.6 3E-17 6.5E-22 143.2 -0.4 227 9-241 241-487 (1081)
17 PRK15387 E3 ubiquitin-protein 99.6 1.3E-15 2.8E-20 135.2 9.7 78 159-246 382-461 (788)
18 PRK15370 E3 ubiquitin-protein 99.6 6E-16 1.3E-20 137.9 6.2 205 9-243 199-428 (754)
19 PRK15370 E3 ubiquitin-protein 99.6 2.1E-15 4.4E-20 134.5 8.0 139 9-172 178-317 (754)
20 KOG3207 Beta-tubulin folding c 99.5 7.9E-15 1.7E-19 118.7 2.5 207 29-246 118-342 (505)
21 KOG1909 Ran GTPase-activating 99.5 1.1E-14 2.5E-19 114.7 2.8 235 5-243 26-311 (382)
22 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.7E-20 122.0 -2.6 87 154-242 269-358 (498)
23 PRK15387 E3 ubiquitin-protein 99.5 1.2E-13 2.7E-18 122.8 7.2 189 8-227 241-465 (788)
24 KOG4237 Extracellular matrix p 99.4 7E-15 1.5E-19 117.7 -4.8 227 11-248 69-340 (498)
25 PF14580 LRR_9: Leucine-rich r 99.4 8.4E-13 1.8E-17 97.3 5.6 128 5-143 15-149 (175)
26 KOG2120 SCF ubiquitin ligase, 99.3 1.7E-13 3.7E-18 106.3 -1.6 175 10-193 186-371 (419)
27 KOG4658 Apoptotic ATPase [Sign 99.3 1.6E-12 3.5E-17 117.9 3.7 221 8-239 544-802 (889)
28 KOG0532 Leucine-rich repeat (L 99.3 1E-13 2.2E-18 115.9 -3.9 173 31-221 74-248 (722)
29 KOG3207 Beta-tubulin folding c 99.3 2.1E-13 4.5E-18 110.6 -2.7 206 6-221 118-340 (505)
30 KOG0532 Leucine-rich repeat (L 99.3 3.8E-13 8.2E-18 112.5 -2.1 191 10-218 76-271 (722)
31 COG4886 Leucine-rich repeat (L 99.2 1.6E-11 3.6E-16 103.7 6.6 192 14-222 98-292 (394)
32 KOG1909 Ran GTPase-activating 99.2 4.7E-12 1E-16 100.1 2.6 214 26-246 24-286 (382)
33 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.7E-16 104.5 4.0 176 5-197 112-290 (394)
34 KOG1259 Nischarin, modulator o 99.2 9.2E-12 2E-16 97.0 1.7 128 55-198 284-413 (490)
35 KOG2120 SCF ubiquitin ligase, 99.1 4.5E-12 9.8E-17 98.5 -1.7 195 32-235 185-391 (419)
36 PF14580 LRR_9: Leucine-rich r 99.0 7E-11 1.5E-15 87.2 1.0 101 30-143 17-122 (175)
37 KOG2982 Uncharacterized conser 99.0 1.3E-10 2.8E-15 90.5 2.3 38 31-68 70-110 (418)
38 KOG2982 Uncharacterized conser 99.0 2.5E-11 5.4E-16 94.4 -1.8 195 34-239 47-287 (418)
39 KOG1259 Nischarin, modulator o 99.0 5.5E-11 1.2E-15 92.8 -0.5 130 32-173 284-413 (490)
40 PLN03150 hypothetical protein; 98.9 2.5E-09 5.3E-14 95.1 6.8 100 34-143 420-524 (623)
41 KOG4658 Apoptotic ATPase [Sign 98.9 2.1E-09 4.6E-14 98.0 4.7 198 8-220 522-730 (889)
42 PF13855 LRR_8: Leucine rich r 98.8 4.9E-09 1.1E-13 63.8 3.6 58 9-66 1-60 (61)
43 COG5238 RNA1 Ran GTPase-activa 98.8 1.1E-09 2.3E-14 84.4 0.7 234 7-244 28-317 (388)
44 KOG0531 Protein phosphatase 1, 98.8 1E-09 2.3E-14 93.2 -0.6 194 7-220 70-268 (414)
45 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.6E-13 62.1 3.3 58 32-89 1-60 (61)
46 PLN03150 hypothetical protein; 98.7 3.9E-08 8.4E-13 87.6 5.9 103 10-122 419-525 (623)
47 KOG0531 Protein phosphatase 1, 98.5 8.5E-09 1.8E-13 87.6 -1.7 219 4-242 90-317 (414)
48 COG5238 RNA1 Ran GTPase-activa 98.5 1.1E-07 2.3E-12 73.6 3.8 216 26-248 24-290 (388)
49 KOG4341 F-box protein containi 98.5 8.7E-09 1.9E-13 83.8 -2.4 80 10-89 139-227 (483)
50 KOG4341 F-box protein containi 98.5 1.1E-08 2.4E-13 83.2 -2.7 226 5-239 160-409 (483)
51 PF12799 LRR_4: Leucine Rich r 98.4 3.2E-07 6.9E-12 51.4 2.9 37 33-69 2-38 (44)
52 PF12799 LRR_4: Leucine Rich r 98.4 4.4E-07 9.6E-12 50.9 3.3 40 9-48 1-40 (44)
53 KOG3665 ZYG-1-like serine/thre 98.3 3.2E-07 7E-12 81.9 2.7 147 32-191 122-281 (699)
54 KOG4579 Leucine-rich repeat (L 98.3 5.9E-08 1.3E-12 67.4 -1.5 102 10-122 28-133 (177)
55 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.5E-13 88.6 -6.3 123 56-194 165-288 (1096)
56 KOG1859 Leucine-rich repeat pr 98.2 2.8E-08 6E-13 86.4 -6.0 121 10-143 165-288 (1096)
57 KOG3665 ZYG-1-like serine/thre 98.2 9.2E-07 2E-11 79.1 3.2 123 113-239 123-258 (699)
58 KOG4579 Leucine-rich repeat (L 98.1 2.4E-07 5.2E-12 64.4 -1.5 102 31-143 26-132 (177)
59 KOG1644 U2-associated snRNP A' 98.1 3.6E-06 7.8E-11 62.5 3.4 123 11-143 21-149 (233)
60 PRK15386 type III secretion pr 98.0 7.3E-06 1.6E-10 68.3 3.7 134 5-169 48-187 (426)
61 PRK15386 type III secretion pr 97.9 1.8E-05 3.8E-10 66.0 5.5 134 29-194 49-186 (426)
62 KOG1644 U2-associated snRNP A' 97.8 2.3E-05 5.1E-10 58.3 4.2 105 10-122 43-150 (233)
63 KOG2123 Uncharacterized conser 97.6 5.7E-06 1.2E-10 64.5 -1.8 79 33-122 20-98 (388)
64 KOG2739 Leucine-rich acidic nu 97.6 4.4E-05 9.6E-10 59.0 2.2 104 30-143 41-152 (260)
65 KOG1947 Leucine rich repeat pr 97.5 1.8E-05 3.9E-10 68.6 -0.1 106 8-122 187-305 (482)
66 KOG1947 Leucine rich repeat pr 97.4 5.1E-05 1.1E-09 65.8 0.4 126 31-165 187-327 (482)
67 KOG2739 Leucine-rich acidic nu 97.3 8.2E-05 1.8E-09 57.5 1.0 106 8-122 42-153 (260)
68 KOG2123 Uncharacterized conser 97.2 1.5E-05 3.2E-10 62.2 -4.1 107 7-121 17-126 (388)
69 PF13306 LRR_5: Leucine rich r 97.2 0.00079 1.7E-08 47.3 4.9 83 3-88 6-91 (129)
70 PF00560 LRR_1: Leucine Rich R 96.5 0.0018 3.9E-08 30.2 1.4 18 34-51 2-19 (22)
71 PF13306 LRR_5: Leucine rich r 96.1 0.0093 2E-07 41.7 4.0 104 107-216 7-112 (129)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.0033 7.3E-08 29.2 0.6 19 56-74 1-19 (22)
73 KOG4308 LRR-containing protein 95.6 0.00013 2.8E-09 62.8 -8.3 36 207-242 262-302 (478)
74 KOG4308 LRR-containing protein 95.5 0.00028 6.1E-09 60.8 -6.9 162 5-172 111-303 (478)
75 PF13504 LRR_7: Leucine rich r 95.1 0.014 2.9E-07 25.2 1.2 8 35-42 4-11 (17)
76 KOG0473 Leucine-rich repeat pr 94.4 0.0025 5.3E-08 48.9 -3.6 89 23-122 32-121 (326)
77 KOG0473 Leucine-rich repeat pr 94.3 0.00089 1.9E-08 51.3 -5.9 87 5-91 38-124 (326)
78 KOG3864 Uncharacterized conser 94.0 0.024 5.2E-07 42.6 1.0 81 113-194 102-185 (221)
79 KOG3864 Uncharacterized conser 93.6 0.037 8E-07 41.6 1.4 81 55-143 101-185 (221)
80 PF13516 LRR_6: Leucine Rich r 92.8 0.021 4.4E-07 27.1 -0.6 22 206-227 1-22 (24)
81 smart00370 LRR Leucine-rich re 92.4 0.15 3.3E-06 24.5 2.3 19 55-73 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 92.4 0.15 3.3E-06 24.5 2.3 19 55-73 2-20 (26)
83 smart00367 LRR_CC Leucine-rich 88.3 0.27 5.9E-06 23.6 1.0 22 206-227 1-23 (26)
84 smart00368 LRR_RI Leucine rich 84.1 0.63 1.4E-05 22.9 1.1 21 207-227 2-22 (28)
85 smart00364 LRR_BAC Leucine-ric 80.5 1.2 2.7E-05 21.5 1.3 16 10-25 3-18 (26)
86 smart00365 LRR_SD22 Leucine-ri 79.1 1.6 3.4E-05 21.1 1.4 14 32-45 2-15 (26)
87 KOG3763 mRNA export factor TAP 68.9 4.4 9.6E-05 35.6 2.6 60 53-122 216-280 (585)
88 KOG3763 mRNA export factor TAP 63.7 3.9 8.5E-05 35.9 1.4 83 156-239 215-309 (585)
89 PF05725 FNIP: FNIP Repeat; I 29.9 99 0.0022 16.7 3.1 7 160-166 13-19 (44)
90 PF07723 LRR_2: Leucine Rich R 26.6 52 0.0011 15.7 1.4 12 209-220 2-13 (26)
91 KOG4242 Predicted myosin-I-bin 26.4 1.3E+02 0.0028 26.5 4.4 80 159-239 354-448 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3.7e-25 Score=205.80 Aligned_cols=202 Identities=26% Similarity=0.397 Sum_probs=83.6
Q ss_pred cccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccc
Q 042184 4 SIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKL 80 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L 80 (261)
.++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..+..+++|
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 3444444444444444443 34444444444444444444443 34444444444444444444443 344444444444
Q ss_pred cceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184 81 RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANL 158 (261)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 158 (261)
++|++++|.+++ .+|..++.+++|+.|++++| .+..+..+..+++|+.|++++ +.....+|..+..+
T Consensus 239 ~~L~L~~n~l~~----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l 307 (968)
T PLN00113 239 NHLDLVYNNLTG----------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPELVIQL 307 (968)
T ss_pred CEEECcCceecc----------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC-CeeccCCChhHcCC
Confidence 444444444332 23344444444444444444 223333444444444444443 12222333334444
Q ss_pred CCCceEEEeecccccccccccccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCC
Q 042184 159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSG 218 (261)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~ 218 (261)
++|++|++++|.+.+..+ ..+..++ +|+.|++++ .++ .+|..++.+++|+.|++++|.
T Consensus 308 ~~L~~L~l~~n~~~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIP-VALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CCCcEEECCCCccCCcCC-hhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 444444444443333222 2233333 444444443 333 333333333334444433333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=6.8e-25 Score=204.03 Aligned_cols=232 Identities=22% Similarity=0.351 Sum_probs=150.6
Q ss_pred CCccccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhcc
Q 042184 1 MNTSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNL 77 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l 77 (261)
+|..+.++++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 3567788888888888888877 67788888888888888888877 77777888888888888888876 677778888
Q ss_pred ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHH
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLI 155 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 155 (261)
++|++|++++|.+++ ..|..+..+++|+.|++++| .+..+..+..+++|+.|++.+ +...+..|..+
T Consensus 260 ~~L~~L~L~~n~l~~----------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~~ 328 (968)
T PLN00113 260 KNLQYLFLYQNKLSG----------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS-NNFTGKIPVAL 328 (968)
T ss_pred CCCCEEECcCCeeec----------cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC-CccCCcCChhH
Confidence 888888888887654 34555555666666666655 334455555555666665554 22333344445
Q ss_pred hCCCCCceEEEeecccccccccccccCCc-----------------------cccceEEEec-cCc-CCCccccCCCccc
Q 042184 156 ANLENLENLIVLMKSKEEVLDLQSLSNPP-----------------------QYLQRLYFKG-DMK-KLPDWIFKPKNVI 210 (261)
Q Consensus 156 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-----------------------~~L~~L~l~~-~l~-~l~~~~~~~~~L~ 210 (261)
..+++|+.|++++|.+.+..+ ..+..++ .+++.|++.+ .+. .+|..+..+++|+
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 555555555555555443333 2233444 0444444444 333 4455555566666
Q ss_pred EEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184 211 RLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 211 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~ 244 (261)
.|++++|.+++..+..+..+++|+.|+++ |.+++
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 66666666666666666666777777776 66553
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=9.7e-24 Score=176.99 Aligned_cols=228 Identities=19% Similarity=0.232 Sum_probs=170.1
Q ss_pred ccCccccceeecCCCCCC--CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchH-hhcccccc
Q 042184 5 IANFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLR 81 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~ 81 (261)
+..++.||.+.+..|+++ .+|..+..+..|.+|+++.|++.++|..+..-.++-+|++++|++..+|.. +.++..|-
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 445566666666666666 677777777777777777777777777777777777777777777766653 44667777
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCC
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLE 159 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 159 (261)
.|++|+| ....+|+....+..|++|.+++| .-.-...+..+++|++|.+++.+.....+|.++..+.
T Consensus 154 fLDLS~N-----------rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 154 FLDLSNN-----------RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH 222 (1255)
T ss_pred hhccccc-----------hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh
Confidence 7777777 45578999999999999999998 3333455667788888888874445567788888889
Q ss_pred CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEe
Q 042184 160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL 238 (261)
Q Consensus 160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 238 (261)
+|..+|+++|.+... | +.+-.++ +|++|.|++ .++++.-..+.-.+|++|++++|+++. +|.++.++++|+.|.+
T Consensus 223 NL~dvDlS~N~Lp~v-P-ecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPIV-P-ECLYKLR-NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhccccccCCCcc-h-HHHhhhh-hhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHh
Confidence 999999999876533 2 2355677 899999988 888776656666788999999998884 6778888999999998
Q ss_pred c-ccccceee
Q 042184 239 A-GTYNYELF 247 (261)
Q Consensus 239 ~-n~~~~~~~ 247 (261)
. |.++.+++
T Consensus 299 n~NkL~FeGi 308 (1255)
T KOG0444|consen 299 NNNKLTFEGI 308 (1255)
T ss_pred ccCcccccCC
Confidence 8 88876653
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.9e-23 Score=172.79 Aligned_cols=233 Identities=25% Similarity=0.262 Sum_probs=155.4
Q ss_pred CCccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccchHhhcccc
Q 042184 1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPVEIRNLKK 79 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 79 (261)
||+.+-++..|..||++.|++.++|..+..-+++-+|++++|+|..+|.. +-++..|-+|+++.|.+..+|+.+..+.+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 68889999999999999999999999998889999999999999999976 45888899999999999999999999999
Q ss_pred ccceeccceecccC---------------chhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeec
Q 042184 80 LRYLMVYQYYFTSG---------------SSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 80 L~~L~l~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~ 143 (261)
|++|++++|.+..- ..-++.....+|..+..+.+|..++++.| ...+|+.+-++++|+.|++++
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence 99999999875421 00012233345555556666666666666 556666666666677666666
Q ss_pred cCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc--CCCccccCCCcccEEEeccCCCC
Q 042184 144 QNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK--KLPDWIFKPKNVIRLGLDLSGLT 220 (261)
Q Consensus 144 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~--~l~~~~~~~~~L~~L~l~~~~~~ 220 (261)
+....+....+...+|++|+++.|.++. .| ..+..++ .|++|.+.+ .++ .+|+.++.+..|+.+..++|.+.
T Consensus 255 --N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP-~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 255 --NKITELNMTEGEWENLETLNLSRNQLTV-LP-DAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred --CceeeeeccHHHHhhhhhhccccchhcc-ch-HHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 2233333334444555566666555442 22 2344555 566665554 332 55555555555555555444433
Q ss_pred CChhHHhccCCcccceEec
Q 042184 221 EDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 221 ~~~~~~~~~~~~L~~L~l~ 239 (261)
..|+.+..|++|+.|.++
T Consensus 330 -lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 330 -LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred -cCchhhhhhHHHHHhccc
Confidence 344455555555555555
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=4.2e-23 Score=164.57 Aligned_cols=223 Identities=27% Similarity=0.309 Sum_probs=166.6
Q ss_pred CccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184 2 NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR 81 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 81 (261)
|++++.+.+++.++.+.|.+.++|+.++.+..++.++++.|.+.++|+.++.+..++.++..+|++...|.++..+.+|.
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~ 163 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLS 163 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHH
Confidence 56666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCC
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN 160 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 160 (261)
.+++.+|++ ..+|+..-+++.|++++...| ...+|..++.+.+|..|++.. +....+| .|+.|+.
T Consensus 164 ~l~~~~n~l-----------~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~--Nki~~lP-ef~gcs~ 229 (565)
T KOG0472|consen 164 KLDLEGNKL-----------KALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR--NKIRFLP-EFPGCSL 229 (565)
T ss_pred Hhhccccch-----------hhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh--cccccCC-CCCccHH
Confidence 777777743 356666666778888887777 677778888888888888766 4444455 7778888
Q ss_pred CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
|..+.++.|.+. ..+.+..++++ ++.+||+++ .++++|+.+..+++|++||+++|.+++. +-.++++ .|+.|-+.
T Consensus 230 L~Elh~g~N~i~-~lpae~~~~L~-~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~le 305 (565)
T KOG0472|consen 230 LKELHVGENQIE-MLPAEHLKHLN-SLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALE 305 (565)
T ss_pred HHHHHhcccHHH-hhHHHHhcccc-cceeeeccccccccCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhc
Confidence 888888887654 44545567888 899999998 8999999888889999999999998864 4466777 78888777
Q ss_pred -ccc
Q 042184 240 -GTY 242 (261)
Q Consensus 240 -n~~ 242 (261)
|++
T Consensus 306 GNPl 309 (565)
T KOG0472|consen 306 GNPL 309 (565)
T ss_pred CCch
Confidence 765
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=1e-20 Score=157.49 Aligned_cols=237 Identities=19% Similarity=0.199 Sum_probs=153.2
Q ss_pred cccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccccc-chHhhccccc
Q 042184 4 SIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVREL-PVEIRNLKKL 80 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L 80 (261)
+|..=.++++|++++|.|+.+. ..|..+.+|..|.++.|+++.+|.. +.++++|+.|++..|.+... ...+..+++|
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL 247 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence 3444467889999999888444 5677888899999999998877754 55689999999988887733 4456667777
Q ss_pred cceeccceecccC-------------chhhhhhhhhcC-CcccCCCCCCeEecccc--chHHHHHHhccccccEEEeecc
Q 042184 81 RYLMVYQYYFTSG-------------SSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQ 144 (261)
Q Consensus 81 ~~L~l~~~~~~~~-------------~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~ 144 (261)
+.|.+.+|.+... +.+.-+.+..+. .++..++.|+.|++++| ....++.+..+++|+.|+++.
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~- 326 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS- 326 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-
Confidence 7777777654321 000111111111 23445556666666666 333455566666666666665
Q ss_pred CCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc----CCCccccCCCcccEEEeccCCC
Q 042184 145 NGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK----KLPDWIFKPKNVIRLGLDLSGL 219 (261)
Q Consensus 145 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~----~l~~~~~~~~~L~~L~l~~~~~ 219 (261)
+....-.+..+..+..|++|.+++|.+..... ..+..+. +|++|+|+. .+. +-...+..+++|+.|++.+|++
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-~af~~ls-sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAE-GAFVGLS-SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHh-hHHHHhh-hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 23333334455566666666666665543333 3466667 888888877 554 2222344588888888888888
Q ss_pred CCChhHHhccCCcccceEec-cccc
Q 042184 220 TEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 220 ~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
....-.++.+++.|++|++. |.+.
T Consensus 405 k~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred eecchhhhccCcccceecCCCCcce
Confidence 77666788888899999988 7663
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=7.1e-21 Score=158.43 Aligned_cols=227 Identities=18% Similarity=0.235 Sum_probs=144.1
Q ss_pred cccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccch-Hhhccccc
Q 042184 4 SIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKL 80 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L 80 (261)
++.-++.|+.||++.|.|.+++ ..+..-.++++|++++|+|+.+. ..+..+.+|.+|.+++|+++.+|. .+.++++|
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 3445666777777777777555 34444566777777777777333 346667777788888887776665 34558888
Q ss_pred cceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHH-HHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184 81 RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANL 158 (261)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 158 (261)
+.|++..|.+.. .+ --.|..+++|+.|.+..| ...+ -..+-.+..+++|++.. +.....--.++..+
T Consensus 224 ~~LdLnrN~iri---------ve-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 224 ESLDLNRNRIRI---------VE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGL 292 (873)
T ss_pred hhhhccccceee---------eh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhccccccc
Confidence 888888776531 11 234556666666666666 2222 22345566677777766 22222223456677
Q ss_pred CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccce
Q 042184 159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQL 236 (261)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 236 (261)
+.|+.|++++|.+... ..+.+...+ +|++|+|+. .++++++. +..+..|++|.++.|.+.......+..+++|++|
T Consensus 293 t~L~~L~lS~NaI~ri-h~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRI-HIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred chhhhhccchhhhhee-ecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 7788888888776543 334566566 788888887 77777654 3346777777777777765444556667777777
Q ss_pred Eec-cccc
Q 042184 237 RLA-GTYN 243 (261)
Q Consensus 237 ~l~-n~~~ 243 (261)
|++ |.++
T Consensus 371 dLr~N~ls 378 (873)
T KOG4194|consen 371 DLRSNELS 378 (873)
T ss_pred cCcCCeEE
Confidence 777 7654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.3e-20 Score=150.51 Aligned_cols=225 Identities=22% Similarity=0.283 Sum_probs=185.6
Q ss_pred cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
-+.++..+.++++.+|.+..+|..++.+..++.++.++|++.++|+.++....+..++++.|.+..++++++.+-.+..+
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 45667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE 162 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 162 (261)
+..+|+ +..+|+.+.++.++..+.+.++ ....++..-.++.|++++... +.-+.+|..++.+.+|.
T Consensus 143 ~~~~N~-----------i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~--N~L~tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 143 DATNNQ-----------ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS--NLLETLPPELGGLESLE 209 (565)
T ss_pred hccccc-----------cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch--hhhhcCChhhcchhhhH
Confidence 888884 4578999999999999999888 445555444499999999866 66778999999999999
Q ss_pred eEEEeecccccccccccccCCccccceEEEec-cCcCCCcccc-CCCcccEEEeccCCCCCChhHHhccCCcccceEec-
Q 042184 163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIF-KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA- 239 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~- 239 (261)
.|++..|.+... | .|.++. .|+.+.++. .+..+|.... .++++..||+.+|++.+ .|..+.-+.+|+.||++
T Consensus 210 ~LyL~~Nki~~l-P--ef~gcs-~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 210 LLYLRRNKIRFL-P--EFPGCS-LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSN 284 (565)
T ss_pred HHHhhhcccccC-C--CCCccH-HHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccC
Confidence 999999987633 2 478888 999999999 8999998876 69999999999999985 56677788999999999
Q ss_pred cccccee
Q 042184 240 GTYNYEL 246 (261)
Q Consensus 240 n~~~~~~ 246 (261)
|.+++-.
T Consensus 285 N~is~Lp 291 (565)
T KOG0472|consen 285 NDISSLP 291 (565)
T ss_pred CccccCC
Confidence 8876544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=1e-16 Score=150.78 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=38.2
Q ss_pred ccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 186 YLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 186 ~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
+++.|++++ .++.+|.++..+++|+.|++++|.-...++..+..+++|+.++++
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 667777777 777777777778888888888775444455555667777777777
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=2.7e-19 Score=127.63 Aligned_cols=162 Identities=26% Similarity=0.353 Sum_probs=116.2
Q ss_pred ccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCc
Q 042184 28 VGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG 107 (261)
Q Consensus 28 ~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 107 (261)
+.++.+++.|.+++|.++.+|..+..+.+|++|++.+|+++.+|..++.+++|+.|+++-|. ...+|.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-----------l~~lprg 97 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-----------LNILPRG 97 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-----------hhcCccc
Confidence 34567777777777777777777777777777777777777777777777778777777763 3467777
Q ss_pred ccCCCCCCeEecccc---chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184 108 FGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP 184 (261)
Q Consensus 108 ~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 184 (261)
++.++.|+.|++.+| ...+|..+-.+..|+.|++++ +..+.+|..++++++|+.|.+.+|.+.+. + ..+..+.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d--ndfe~lp~dvg~lt~lqil~lrdndll~l-p-keig~lt 173 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD--NDFEILPPDVGKLTNLQILSLRDNDLLSL-P-KEIGDLT 173 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC--CCcccCChhhhhhcceeEEeeccCchhhC-c-HHHHHHH
Confidence 777777787777777 345666677777777777766 56666777777778888887777765532 2 2355666
Q ss_pred cccceEEEec-cCcCCCccccC
Q 042184 185 QYLQRLYFKG-DMKKLPDWIFK 205 (261)
Q Consensus 185 ~~L~~L~l~~-~l~~l~~~~~~ 205 (261)
.|+.|.+++ .++.+|+.++.
T Consensus 174 -~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 174 -RLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred -HHHHHhcccceeeecChhhhh
Confidence 777777777 77777766554
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.4e-17 Score=136.57 Aligned_cols=236 Identities=19% Similarity=0.208 Sum_probs=166.2
Q ss_pred cccCccccceeecCCCCCC-----CCcccccCcccccEEEecCCCcee-------cccccCCCCCCcEEeCCCCccc-cc
Q 042184 4 SIANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNKKVKI-------IPKSIGNLLGLESLDLKNTLVR-EL 70 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~i~~-------~~~~l~~l~~L~~L~l~~~~~~-~~ 70 (261)
.+..++.|++++++++.++ .+++.+...+.++.++++++.+.. ++..+..+++|++|++++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3456677999999999885 355566677889999998876552 3345667889999999999887 34
Q ss_pred chHhhcccc---ccceeccceecccCchhhhhhhhhcCCcccCC-CCCCeEecccc--c----hHHHHHHhccccccEEE
Q 042184 71 PVEIRNLKK---LRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL-TNLQKLCIIEA--D----SEVLKELMKLRQLRKLS 140 (261)
Q Consensus 71 ~~~~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~--~----~~~~~~l~~~~~L~~L~ 140 (261)
+..+..+.+ |++|++++|.++.. ....+...+..+ ++|+.|++++| . ......+..++.|++|+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDR------GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchH------HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 444444444 99999999987631 233344556666 89999999998 2 23455677778999999
Q ss_pred eeccCCCcc---chHHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCcC--CCcccc----CCC
Q 042184 141 IRPQNGNGK---DLCVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMKK--LPDWIF----KPK 207 (261)
Q Consensus 141 l~~~~~~~~---~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~~--l~~~~~----~~~ 207 (261)
+.++..... .++..+...++|++|++++|.+.+... ...+..++ +|++|++++ .++. +..... ..+
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~-~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK-SLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC-CCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 988332222 234456667899999999997753221 12355677 999999998 7762 111111 247
Q ss_pred cccEEEeccCCCCCCh----hHHhccCCcccceEec-cccccee
Q 042184 208 NVIRLGLDLSGLTEDP----IRVLHALPNLLQLRLA-GTYNYEL 246 (261)
Q Consensus 208 ~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~-n~~~~~~ 246 (261)
.|++|++++|.+++.. ...+..+++|+.++++ |.++.+.
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 8999999999998532 3455667899999999 9887653
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=5.7e-17 Score=132.97 Aligned_cols=231 Identities=17% Similarity=0.154 Sum_probs=142.6
Q ss_pred cccCccccceeecCCCCCCC-------CcccccCcccccEEEecCCCce-ecccccCCC---CCCcEEeCCCCccc----
Q 042184 4 SIANFKLMKVLDLEDAPVVY-------LPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNL---LGLESLDLKNTLVR---- 68 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~-------~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l---~~L~~L~l~~~~~~---- 68 (261)
.+...+.+++++++++.+.. ++..+..+++|+.|++++|.+. ..+..+..+ ++|++|++++|.+.
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 34456678888888775542 2234556778888888888775 333333333 44888888888766
Q ss_pred -ccchHhhcc-ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHHHhccccccEEE
Q 042184 69 -ELPVEIRNL-KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKELMKLRQLRKLS 140 (261)
Q Consensus 69 -~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~l~~~~~L~~L~ 140 (261)
.+...+..+ ++|+.|++++|.+++. ....+...+..+++|+.|++++| .+ .++..+...++|+.|+
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGA------SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCch------HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence 223344556 7788888888877642 23344556667778888888877 21 2334455566888888
Q ss_pred eeccCCC---ccchHHHHhCCCCCceEEEeeccccccccccccc----CCccccceEEEec-cCc-----CCCccccCCC
Q 042184 141 IRPQNGN---GKDLCVLIANLENLENLIVLMKSKEEVLDLQSLS----NPPQYLQRLYFKG-DMK-----KLPDWIFKPK 207 (261)
Q Consensus 141 l~~~~~~---~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~----~~~~~L~~L~l~~-~l~-----~l~~~~~~~~ 207 (261)
++++... ...+...+..+++|++|++++|.+.+........ ..+ .|+.|++.+ .++ .+...+..++
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 278 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI-SLLTLSLSCNDITDDGAKDLAEVLAEKE 278 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC-CceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence 8762211 1223455667778888888888665321111011 134 788888887 664 3334455567
Q ss_pred cccEEEeccCCCCCChh----HHhccC-CcccceEec-cc
Q 042184 208 NVIRLGLDLSGLTEDPI----RVLHAL-PNLLQLRLA-GT 241 (261)
Q Consensus 208 ~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~-n~ 241 (261)
+|+++++++|.+++... ..+... +.|+.+++. |.
T Consensus 279 ~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 279 SLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 88888888888876532 233444 677777776 54
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.65 E-value=5.6e-16 Score=145.86 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=26.2
Q ss_pred ccceEEEec--cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 186 YLQRLYFKG--DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 186 ~L~~L~l~~--~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
+|+.|++++ .+..+|..++.+++|+.|++++|...+.++..+ .+++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 455555554 233556555666666666666654333333222 34444444444
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=5.4e-18 Score=121.06 Aligned_cols=157 Identities=23% Similarity=0.274 Sum_probs=142.1
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 84 (261)
+-++.+++.|.++.|.++.+|+.++.+.+|++|++.+|+++++|..++.+++|+.|++..|.+..+|.+++.+|.|+.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN 163 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 163 (261)
+.+|++.+ ..+|..+..+..|+.|.+++| ...+|..++++++|+.|.+.. +..-.+|..++.+..|+.
T Consensus 109 ltynnl~e---------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd--ndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 109 LTYNNLNE---------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD--NDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred cccccccc---------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc--CchhhCcHHHHHHHHHHH
Confidence 99999854 478888888999999999999 777888999999999999987 444568999999999999
Q ss_pred EEEeecccc
Q 042184 164 LIVLMKSKE 172 (261)
Q Consensus 164 L~l~~n~~~ 172 (261)
|.+.+|++.
T Consensus 178 lhiqgnrl~ 186 (264)
T KOG0617|consen 178 LHIQGNRLT 186 (264)
T ss_pred Hhcccceee
Confidence 999998765
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=4.9e-18 Score=148.08 Aligned_cols=125 Identities=21% Similarity=0.204 Sum_probs=54.3
Q ss_pred ccCCCCCCeEecccc-chHHH-HHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcc
Q 042184 108 FGSLTNLQKLCIIEA-DSEVL-KELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ 185 (261)
Q Consensus 108 ~~~~~~L~~L~l~~~-~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 185 (261)
+...++|+.|++++| ...+| +.+.++..|++|++++ +.-..+|..+..++.|++|....|.+... | .+..+|
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tva~~~~L~tL~ahsN~l~~f-P--e~~~l~- 452 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG--NKLTTLPDTVANLGRLHTLRAHSNQLLSF-P--ELAQLP- 452 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhccc--chhhhhhHHHHhhhhhHHHhhcCCceeec-h--hhhhcC-
Confidence 334444555555544 22222 2344444455555544 22233444444455555554444443321 1 244455
Q ss_pred ccceEEEec-cCc--CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 186 YLQRLYFKG-DMK--KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 186 ~L~~L~l~~-~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
+|+.+|++. +++ .++..... ++|++||+++|.-..-....+..++++..+++.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred cceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecc
Confidence 555555555 444 22221111 555555555554332223344444455555544
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=3e-17 Score=143.25 Aligned_cols=227 Identities=21% Similarity=0.254 Sum_probs=170.0
Q ss_pred cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184 9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY 88 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 88 (261)
.+|++++++.+.+..+|.++..|.+|+.+....|+++.+|..+....+|++|.+..|.+..+|+....+..|++|++..|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 46788888888888888878888888888888888887777777788888888888888877777777788888888877
Q ss_pred ecccC----chhhhh----------hhhhcCC-cccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccch
Q 042184 89 YFTSG----SSIAEE----------AAAKLHP-GFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDL 151 (261)
Q Consensus 89 ~~~~~----~~~~~~----------~~~~l~~-~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 151 (261)
++... +.+.+. ....+|. .=...+.|+.|.+.+| .+.....+-..++|+.|++++ +....+
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy--NrL~~f 398 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY--NRLNSF 398 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc--cccccC
Confidence 65432 000000 1111111 1113456888888888 666667788999999999998 333334
Q ss_pred H-HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhcc
Q 042184 152 C-VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHA 229 (261)
Q Consensus 152 ~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 229 (261)
| ..+.+++.|++|++++|.+... + ..+..++ .|++|.... .+..+| .+..++.|+.+|++.|+++.........
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~L-p-~tva~~~-~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTL-P-DTVANLG-RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhh-h-HHHHhhh-hhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 4 4577899999999999988744 3 3477788 999999988 888999 6888999999999999988754444344
Q ss_pred CCcccceEec-cc
Q 042184 230 LPNLLQLRLA-GT 241 (261)
Q Consensus 230 ~~~L~~L~l~-n~ 241 (261)
-|+|++||++ |.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 4899999999 75
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.3e-15 Score=135.24 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=54.5
Q ss_pred CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceE
Q 042184 159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLR 237 (261)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 237 (261)
.+|+.|++++|.+.+... ..+ +|+.|++++ .++.+|.. ..+|+.|++++|.++ .+|..+.++++|+.++
T Consensus 382 ~~L~~LdLs~N~Lt~LP~-----l~s-~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPV-----LPS-ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred cccceEEecCCcccCCCC-----ccc-CCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 357777777776653211 123 778888887 77777653 346777888888877 4566788889999999
Q ss_pred ec-cccccee
Q 042184 238 LA-GTYNYEL 246 (261)
Q Consensus 238 l~-n~~~~~~ 246 (261)
++ |.+++..
T Consensus 452 Ls~N~Ls~~~ 461 (788)
T PRK15387 452 LEGNPLSERT 461 (788)
T ss_pred CCCCCCCchH
Confidence 99 8887553
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.61 E-value=6e-16 Score=137.87 Aligned_cols=205 Identities=17% Similarity=0.215 Sum_probs=121.8
Q ss_pred cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184 9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY 88 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 88 (261)
++++.|++++|.++.+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 468888888888888776554 578888888888887776543 468888888888777776553 46778888777
Q ss_pred ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHh-------------------ccccccEEEeeccCCCc
Q 042184 89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELM-------------------KLRQLRKLSIRPQNGNG 148 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~-------------------~~~~L~~L~l~~~~~~~ 148 (261)
+++ .+|..+. ++|+.|++++| ...++..+. ..++|+.|++.+ +..
T Consensus 273 ~L~-----------~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~--N~L 337 (754)
T PRK15370 273 KIS-----------CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGE--NAL 337 (754)
T ss_pred ccC-----------ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccC--Ccc
Confidence 554 3444332 36777777776 222222111 113455555544 111
Q ss_pred cchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC---hh
Q 042184 149 KDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED---PI 224 (261)
Q Consensus 149 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~---~~ 224 (261)
..+|..+. ++|+.|++++|.+.. .+ ..+ .+ +|+.|++++ .++.+|..+. ..|+.|++++|.+... ++
T Consensus 338 t~LP~~l~--~sL~~L~Ls~N~L~~-LP-~~l--p~-~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~ 408 (754)
T PRK15370 338 TSLPASLP--PELQVLDVSKNQITV-LP-ETL--PP-TITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLP 408 (754)
T ss_pred ccCChhhc--CcccEEECCCCCCCc-CC-hhh--cC-CcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHH
Confidence 22333332 466666666665542 22 111 13 667777766 6666665443 3566777777766532 22
Q ss_pred HHhccCCcccceEec-cccc
Q 042184 225 RVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 225 ~~~~~~~~L~~L~l~-n~~~ 243 (261)
.....++++..+++. |+++
T Consensus 409 ~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 409 HFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHhhcCCCccEEEeeCCCcc
Confidence 233445778888888 8775
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=2.1e-15 Score=134.48 Aligned_cols=139 Identities=18% Similarity=0.218 Sum_probs=100.5
Q ss_pred cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184 9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY 88 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 88 (261)
.+...|++++++++.+|..+. ++++.|++++|.++.+|..+. .+|++|++++|.++.+|..+. ++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 356789999999998887654 579999999999999887654 699999999999998887654 47999999999
Q ss_pred ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEe
Q 042184 89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVL 167 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 167 (261)
.++ .+|..+. .+|+.|++++| ...+|..+. ++|+.|+++++ . ...+|..+. ++|+.|+++
T Consensus 252 ~L~-----------~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~-Lt~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 252 RIT-----------ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-S-IRTLPAHLP--SGITHLNVQ 312 (754)
T ss_pred ccC-----------cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-c-cccCcccch--hhHHHHHhc
Confidence 664 4555543 47999999988 444555443 58999999872 2 222332221 245555555
Q ss_pred ecccc
Q 042184 168 MKSKE 172 (261)
Q Consensus 168 ~n~~~ 172 (261)
+|.+.
T Consensus 313 ~N~Lt 317 (754)
T PRK15370 313 SNSLT 317 (754)
T ss_pred CCccc
Confidence 55443
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=7.9e-15 Score=118.71 Aligned_cols=207 Identities=18% Similarity=0.151 Sum_probs=154.9
Q ss_pred cCcccccEEEecCCCceecc--cccCCCCCCcEEeCCCCccc---ccchHhhccccccceeccceecccCchhhhhhhhh
Q 042184 29 GSLLNLHYLSLRNKKVKIIP--KSIGNLLGLESLDLKNTLVR---ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAK 103 (261)
Q Consensus 29 ~~l~~L~~L~l~~~~i~~~~--~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 103 (261)
+++.+|+...+.++.+...+ .....|++++.|+++.|-++ .+...+..+|+|+.|+++.|.+.- ....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-------~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-------FISS 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-------Cccc
Confidence 47889999999998887665 35678999999999999877 445566789999999999998742 1111
Q ss_pred cCCcccCCCCCCeEecccc---chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccc
Q 042184 104 LHPGFGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSL 180 (261)
Q Consensus 104 l~~~~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 180 (261)
... ..+++|+.|.++.| ...+...+..+|+|..|++.++. ..........-+..|+.|++++|.+.........
T Consensus 191 ~~~--~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~ 267 (505)
T KOG3207|consen 191 NTT--LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLIDFDQGYKV 267 (505)
T ss_pred cch--hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCccccccccccc
Confidence 111 25678999999999 44556668889999999998832 2222222344567899999999988866655668
Q ss_pred cCCccccceEEEec-cCc--CCCcc-----ccCCCcccEEEeccCCCCCC-hhHHhccCCcccceEec-cccccee
Q 042184 181 SNPPQYLQRLYFKG-DMK--KLPDW-----IFKPKNVIRLGLDLSGLTED-PIRVLHALPNLLQLRLA-GTYNYEL 246 (261)
Q Consensus 181 ~~~~~~L~~L~l~~-~l~--~l~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~-n~~~~~~ 246 (261)
..+| .|..|.++. .++ .+|+. ...+++|++|++..|.+.+. ....+..+++|+.|.+. |+++-+.
T Consensus 268 ~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 268 GTLP-GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccc-chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 8899 999999998 877 34443 34589999999999998653 23455678899999988 8886544
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=1.1e-14 Score=114.73 Aligned_cols=235 Identities=16% Similarity=0.149 Sum_probs=171.0
Q ss_pred ccCccccceeecCCCCCC-----CCcccccCcccccEEEecCC---Cce-ecccc-------cCCCCCCcEEeCCCCccc
Q 042184 5 IANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNK---KVK-IIPKS-------IGNLLGLESLDLKNTLVR 68 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~---~i~-~~~~~-------l~~l~~L~~L~l~~~~~~ 68 (261)
+..+..++++++++|.|. .+-+.+.+.++|+..++++- +.. ++|+. +..+++|++|+|++|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 345677899999999888 24466777889999999863 222 56653 456789999999999887
Q ss_pred -ccc----hHhhccccccceeccceecccCchhhhhhhhh------cCCcccCCCCCCeEecccc-----c-hHHHHHHh
Q 042184 69 -ELP----VEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAK------LHPGFGSLTNLQKLCIIEA-----D-SEVLKELM 131 (261)
Q Consensus 69 -~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------l~~~~~~~~~L~~L~l~~~-----~-~~~~~~l~ 131 (261)
..+ ..+..+.+|++|.+.+|.+... +...+.. .....++-++|+.+....| . ......+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~---ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPE---AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChh---HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 333 3456789999999999987542 1111111 3345667788999999998 1 23455688
Q ss_pred ccccccEEEeeccCCCc---cchHHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCc-----CC
Q 042184 132 KLRQLRKLSIRPQNGNG---KDLCVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMK-----KL 199 (261)
Q Consensus 132 ~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~-----~l 199 (261)
..+.|+.+.+..+.... ......+..+++|+.|++.+|.++..-. ...+..+| +|+.|++++ .+. .+
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccccccHHHH
Confidence 88999999998732222 2345678899999999999998764322 14577888 999999998 765 23
Q ss_pred Ccccc-CCCcccEEEeccCCCCCChh----HHhccCCcccceEec-cccc
Q 042184 200 PDWIF-KPKNVIRLGLDLSGLTEDPI----RVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 200 ~~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~-n~~~ 243 (261)
...+. ..|+|+.|.+.+|.++.... .++...|.|..|+++ |.+.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 33333 37999999999999986432 345678999999999 9883
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=1.2e-15 Score=121.96 Aligned_cols=87 Identities=18% Similarity=0.196 Sum_probs=51.7
Q ss_pred HHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184 154 LIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALP 231 (261)
Q Consensus 154 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 231 (261)
-++.+++|+++++++|.+....+ ..|.+.. .++.|.|.. .+..+... +..+..|+.|++.+|+++...+-.+....
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIED-GAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HHhhcccceEeccCCCccchhhh-hhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 35566677777777776665444 4466666 666666666 55533322 34466666666666666654444555566
Q ss_pred cccceEec-ccc
Q 042184 232 NLLQLRLA-GTY 242 (261)
Q Consensus 232 ~L~~L~l~-n~~ 242 (261)
.|..|++- |++
T Consensus 347 ~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 347 SLSTLNLLSNPF 358 (498)
T ss_pred eeeeeehccCcc
Confidence 66666665 554
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=1.2e-13 Score=122.84 Aligned_cols=189 Identities=19% Similarity=0.197 Sum_probs=118.4
Q ss_pred ccccceeecCCCCCCCCcccccCc-----------------ccccEEEecCCCceecccccCCCCCCcEEeCCCCccccc
Q 042184 8 FKLMKVLDLEDAPVVYLPEGVGSL-----------------LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL 70 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~~~~~~~~~l-----------------~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~ 70 (261)
.++|++|++++|.++.+|.....+ .+|+.|++++|.++.+|.. .++|++|++++|.+..+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~L 317 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL 317 (788)
T ss_pred CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccC
Confidence 478888888888887666432111 2344455555555544432 36788888888777755
Q ss_pred chHhhc----------------c-ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhc
Q 042184 71 PVEIRN----------------L-KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMK 132 (261)
Q Consensus 71 ~~~~~~----------------l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~ 132 (261)
|..... + .+|+.|++++|+++ .+|.. ..+|+.|++++| ...++..
T Consensus 318 p~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-----------~LP~l---p~~L~~L~Ls~N~L~~LP~l--- 380 (788)
T PRK15387 318 PALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-----------SLPTL---PSELYKLWAYNNRLTSLPAL--- 380 (788)
T ss_pred CCCcccccccccccCccccccccccccceEecCCCccC-----------CCCCC---CcccceehhhccccccCccc---
Confidence 431110 0 13555555555433 23321 134555555555 2223321
Q ss_pred cccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccE
Q 042184 133 LRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIR 211 (261)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~ 211 (261)
..+|+.|++++ +....+|. ..++|+.|++++|.+.+. + .++.+|+.|++++ .++.+|..+..+++|+.
T Consensus 381 ~~~L~~LdLs~--N~Lt~LP~---l~s~L~~LdLS~N~LssI-P-----~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 381 PSGLKELIVSG--NRLTSLPV---LPSELKELMVSGNRLTSL-P-----MLPSGLLSLSVYRNQLTRLPESLIHLSSETT 449 (788)
T ss_pred ccccceEEecC--CcccCCCC---cccCCCEEEccCCcCCCC-C-----cchhhhhhhhhccCcccccChHHhhccCCCe
Confidence 24688888877 22223443 236799999999987643 3 1233899999999 99999999999999999
Q ss_pred EEeccCCCCCChhHHh
Q 042184 212 LGLDLSGLTEDPIRVL 227 (261)
Q Consensus 212 L~l~~~~~~~~~~~~~ 227 (261)
|++++|.+++..+..+
T Consensus 450 LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 450 VNLEGNPLSERTLQAL 465 (788)
T ss_pred EECCCCCCCchHHHHH
Confidence 9999999998766655
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=7e-15 Score=117.71 Aligned_cols=227 Identities=17% Similarity=0.198 Sum_probs=142.4
Q ss_pred cceeecCCCCCCCCc-ccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCC-Ccccccch-Hhhccccccceecc
Q 042184 11 MKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKN-TLVRELPV-EIRNLKKLRYLMVY 86 (261)
Q Consensus 11 L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~ 86 (261)
-.++.++.|+|+.+| ..|+.+++|++|+|+.|.|+ .-|+.+.++.++..|.+.+ |.|+.+|. .+..+..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 456788888888777 56778888888888888888 5666778888887777776 67777765 35667777777776
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHH-HHhccccccEEEeeccC------CCc-----c----
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLK-ELMKLRQLRKLSIRPQN------GNG-----K---- 149 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~-~l~~~~~L~~L~l~~~~------~~~-----~---- 149 (261)
-|++.- .....+..++++..|.+.+| ...++. .+..+.+++++.+..+. ..+ .
T Consensus 149 an~i~C----------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 149 ANHINC----------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred hhhhcc----------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 665431 22345666666666666666 333333 34444455544443200 000 0
Q ss_pred -------chH-------------HHHh-CCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCC
Q 042184 150 -------DLC-------------VLIA-NLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKP 206 (261)
Q Consensus 150 -------~~~-------------~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~ 206 (261)
..| ..+. +...+..--.+.+.....-|...|..+| +|++|++++ .++.+.+ ++...
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcch
Confidence 000 0000 0011111111112222233434588899 999999999 8986654 57778
Q ss_pred CcccEEEeccCCCCCChhHHhccCCcccceEec-ccccceeeE
Q 042184 207 KNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYELFH 248 (261)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~~~~ 248 (261)
..++.|.+..|++...-..++.++..|+.|++. |.++--.+.
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 999999999998875445577889999999999 988644443
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.37 E-value=8.4e-13 Score=97.32 Aligned_cols=128 Identities=22% Similarity=0.292 Sum_probs=50.7
Q ss_pred ccCccccceeecCCCCCCCCccccc-CcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHh-hccccccc
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVG-SLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEI-RNLKKLRY 82 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~ 82 (261)
+.++.++++|++.+|.|+.+. .++ .+.+|+.|++++|.++.+. .+..++.|++|++++|.++.+...+ ..+|+|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 446667899999999998664 344 5789999999999999774 5778999999999999999886655 46899999
Q ss_pred eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-----chHHHHHHhccccccEEEeec
Q 042184 83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-----DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-----~~~~~~~l~~~~~L~~L~l~~ 143 (261)
|++++|++.. . .--..+..+++|+.|++.+| .....-.+..+|+|+.|+-..
T Consensus 93 L~L~~N~I~~--------l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISD--------L-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS---S--------C-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCCcCCC--------h-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999997752 2 22356677888999999888 222334567777777776544
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.7e-13 Score=106.26 Aligned_cols=175 Identities=17% Similarity=0.106 Sum_probs=100.6
Q ss_pred ccceeecCCCCCC--CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCc-cc--ccchHhhccccccce
Q 042184 10 LMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTL-VR--ELPVEIRNLKKLRYL 83 (261)
Q Consensus 10 ~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L~~L 83 (261)
.|++||+++..++ .+-..++.|.+|+.|.+.++++. .+-..+++-.+|+.|+++.+. ++ ...-.+..|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3667777777666 44455566777777777777766 555556666777777777654 55 222345667777777
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-----chHHHHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-----DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANL 158 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 158 (261)
++++|.++.. .......+ --++|+.|+++++ ...+.-...++|++.+|+++++..........+.++
T Consensus 266 NlsWc~l~~~------~Vtv~V~h--ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 266 NLSWCFLFTE------KVTVAVAH--ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred CchHhhccch------hhhHHHhh--hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 7777765431 11111111 1245777777766 222333355667777777776555555666667777
Q ss_pred CCCceEEEeecccccccccccccCCccccceEEEe
Q 042184 159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFK 193 (261)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 193 (261)
+.|+++.++.|+......+-.+...| .|.+|++.
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~p-sl~yLdv~ 371 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSKP-SLVYLDVF 371 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccCc-ceEEEEec
Confidence 77777777776553222222233444 44444443
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=1.6e-12 Score=117.92 Aligned_cols=221 Identities=29% Similarity=0.317 Sum_probs=112.6
Q ss_pred ccccceeecCCCC--CCCCc-ccccCcccccEEEecCCC-ceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 8 FKLMKVLDLEDAP--VVYLP-EGVGSLLNLHYLSLRNKK-VKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 8 ~~~L~~L~l~~~~--l~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
+++|++|-+..+. +..++ +.|..++.|++||+++|. +.++|+.++.+.+|++|+++++.+..+|.++.++.+|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 3455555555553 33333 234456666666666554 4466666666666666666666666666666666666666
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccC--------------
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQN-------------- 145 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~-------------- 145 (261)
++..+... ...+.....+.+|+.|.+... .......+..+.+|+.+......
T Consensus 624 nl~~~~~l----------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 624 NLEVTGRL----------ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR 693 (889)
T ss_pred cccccccc----------ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH
Confidence 66655321 122333334555666655443 22333334444444444433210
Q ss_pred ----------CCccchHHHHhCCCCCceEEEeecccccccc----cccccC-CccccceEEEec-cCcCCCccccCCCcc
Q 042184 146 ----------GNGKDLCVLIANLENLENLIVLMKSKEEVLD----LQSLSN-PPQYLQRLYFKG-DMKKLPDWIFKPKNV 209 (261)
Q Consensus 146 ----------~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~-~~~~L~~L~l~~-~l~~l~~~~~~~~~L 209 (261)
......+..+..+.+|+.|.+.++....... ...... ++ ++..+...+ ..-..+.+..-.++|
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~-~l~~~~~~~~~~~r~l~~~~f~~~L 772 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP-NLSKVSILNCHMLRDLTWLLFAPHL 772 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH-HHHHHHhhccccccccchhhccCcc
Confidence 1112233445566778888887776542111 001111 33 333333333 333444444456788
Q ss_pred cEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 210 IRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
+.|.+..|...+.+......+..++.+.+.
T Consensus 773 ~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~ 802 (889)
T KOG4658|consen 773 TSLSLVSCRLLEDIIPKLKALLELKELILP 802 (889)
T ss_pred cEEEEecccccccCCCHHHHhhhcccEEec
Confidence 888888887666555555555555544443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1e-13 Score=115.88 Aligned_cols=173 Identities=24% Similarity=0.320 Sum_probs=79.5
Q ss_pred cccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccC
Q 042184 31 LLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGS 110 (261)
Q Consensus 31 l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (261)
+..-...+++.|++.++|..+..+..|+.+.++.|.+..+|..++++..|++++++.|++ ..+|..++.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-----------S~lp~~lC~ 142 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-----------SHLPDGLCD 142 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-----------hcCChhhhc
Confidence 333444444445544444444444444444455444444444444555555555555422 234444444
Q ss_pred CCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccce
Q 042184 111 LTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQR 189 (261)
Q Consensus 111 ~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 189 (261)
++ |+.|.+++| ...+|..++..+.|.+|+.+. +....+|..++.+.+|+.+.+..|.+....+ .+..+| |.+
T Consensus 143 lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~--nei~slpsql~~l~slr~l~vrRn~l~~lp~--El~~Lp--Li~ 215 (722)
T KOG0532|consen 143 LP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK--NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE--ELCSLP--LIR 215 (722)
T ss_pred Cc-ceeEEEecCccccCCcccccchhHHHhhhhh--hhhhhchHHhhhHHHHHHHHHhhhhhhhCCH--HHhCCc--eee
Confidence 44 444444444 333444444444444444443 2222344444444445555444444432211 233443 555
Q ss_pred EEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184 190 LYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 190 L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~ 221 (261)
||+++ .+..+|..+..+..|+.|-|.+|.+..
T Consensus 216 lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 216 LDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 55555 455555555555555555555555443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.1e-13 Score=110.63 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=141.5
Q ss_pred cCccccceeecCCCCCCCCc--ccccCcccccEEEecCCCce---ecccccCCCCCCcEEeCCCCccccc-c-hHhhccc
Q 042184 6 ANFKLMKVLDLEDAPVVYLP--EGVGSLLNLHYLSLRNKKVK---IIPKSIGNLLGLESLDLKNTLVREL-P-VEIRNLK 78 (261)
Q Consensus 6 ~~~~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~~~i~---~~~~~l~~l~~L~~L~l~~~~~~~~-~-~~~~~l~ 78 (261)
.++++|+++.+.++.+...+ .....|++++.|+++.|-+. .+-.....+++|+.|+++.|.+... . ..-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 36778888999988777433 45567899999999988765 3444567889999999999887622 1 1223577
Q ss_pred cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEeccccc--hHHHHHHhccccccEEEeeccCCCccchHHHHh
Q 042184 79 KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEAD--SEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA 156 (261)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 156 (261)
.|+.|.++.|.++. .++...+..+|+|+.|.+..|. .........+..|+.|++++++..........+
T Consensus 198 ~lK~L~l~~CGls~---------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW---------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhheEEeccCCCCH---------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 88999999998853 3455566678888899888871 111222344567888888884333333334567
Q ss_pred CCCCCceEEEeeccccccccc-----ccccCCccccceEEEec-cCcCCCc--cccCCCcccEEEeccCCCCC
Q 042184 157 NLENLENLIVLMKSKEEVLDL-----QSLSNPPQYLQRLYFKG-DMKKLPD--WIFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 157 ~~~~L~~L~l~~n~~~~~~~~-----~~~~~~~~~L~~L~l~~-~l~~l~~--~~~~~~~L~~L~l~~~~~~~ 221 (261)
.++.|..|.++.+.+.+.... +....+| +|+.|.+.. ++.+++. .+...++|+.|.+..|.++.
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~-kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP-KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccc-cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888888888888876543221 1245677 899999988 8865554 24457788888888887754
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=3.8e-13 Score=112.52 Aligned_cols=191 Identities=25% Similarity=0.275 Sum_probs=161.6
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 89 (261)
.-...|++.|.+..+|..+..+..|..+.++.|.+..+|..+.++..|.+++++.|++..+|..++.++ |+.|.+++|+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 345578899999999999988999999999999999999999999999999999999999999999888 9999999996
Q ss_pred cccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEee
Q 042184 90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLM 168 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 168 (261)
++ .+|..++..+.|..|+.+.| ...++..++.+.+|+.|.+.. +....+|..+..++ |.+||+++
T Consensus 155 l~-----------~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR--n~l~~lp~El~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 155 LT-----------SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR--NHLEDLPEELCSLP-LIRLDFSC 220 (722)
T ss_pred cc-----------cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh--hhhhhCCHHHhCCc-eeeeeccc
Confidence 54 78999998899999999999 888999999999999999887 55567888888665 89999999
Q ss_pred cccccccccccccCCccccceEEEec-cCcCCCcccc---CCCcccEEEeccCC
Q 042184 169 KSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIF---KPKNVIRLGLDLSG 218 (261)
Q Consensus 169 n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~---~~~~L~~L~l~~~~ 218 (261)
|.+. .+|+ .|..+. +|++|-|.+ .+..-|..+. ...-.++|+...|+
T Consensus 221 Nkis-~iPv-~fr~m~-~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 221 NKIS-YLPV-DFRKMR-HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Ccee-ecch-hhhhhh-hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 9876 4454 377888 999999999 8876555443 34456777777774
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.6e-11 Score=103.70 Aligned_cols=192 Identities=26% Similarity=0.316 Sum_probs=129.4
Q ss_pred eecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCC-CCcEEeCCCCcccccchHhhccccccceeccceeccc
Q 042184 14 LDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLL-GLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTS 92 (261)
Q Consensus 14 L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 92 (261)
++...+.+......+..++.++.|++.++.++.++....... +|+.|++++|.+..++..+..+++|+.|+++.|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-- 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-- 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--
Confidence 455555543333334455677888888888777777666663 78888888888777766777788888888888744
Q ss_pred CchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccc
Q 042184 93 GSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSK 171 (261)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 171 (261)
.+++...+..+.|+.|.++++ ...++........|+.+.+.+ +.....+..+..+.++..+.+.+|..
T Consensus 176 ---------~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~--N~~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 176 ---------SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN--NSIIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ---------hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC--CcceecchhhhhcccccccccCCcee
Confidence 356665557777888888877 555665555666677777766 32334555666777777777776655
Q ss_pred ccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC
Q 042184 172 EEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 222 (261)
... + ..+..++ +++.|++.+ .++.++. ++...+++.|+++++.+++.
T Consensus 245 ~~~-~-~~~~~l~-~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 245 EDL-P-ESIGNLS-NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred eec-c-chhcccc-ccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 432 1 2355666 788888887 7777766 66777888888888776654
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=4.7e-12 Score=100.13 Aligned_cols=214 Identities=19% Similarity=0.204 Sum_probs=153.8
Q ss_pred ccccCcccccEEEecCCCce-----ecccccCCCCCCcEEeCCCCccc----ccch-------Hhhccccccceecccee
Q 042184 26 EGVGSLLNLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVR----ELPV-------EIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 26 ~~~~~l~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~----~~~~-------~~~~l~~L~~L~l~~~~ 89 (261)
+.......++.+++++|.+. .+...+.+.++|+..++++--.. .+|. .+..+|+|+++++|.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34456788999999999987 34455677889999999864222 4443 34578899999999998
Q ss_pred cccCchhhhhhhhhcCCcccCCCCCCeEecccc--c----hHH---------HHHHhccccccEEEeecc---CCCccch
Q 042184 90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--D----SEV---------LKELMKLRQLRKLSIRPQ---NGNGKDL 151 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~----~~~---------~~~l~~~~~L~~L~l~~~---~~~~~~~ 151 (261)
+... .+..+...+.++..|++|.+.+| . ..+ ....+..+.|+++....+ +.....+
T Consensus 104 ~G~~------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 104 FGPK------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred cCcc------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 8764 45556667778999999999999 1 111 122344578888887762 1223345
Q ss_pred HHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCc-----CCCccccCCCcccEEEeccCCCCCC
Q 042184 152 CVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMK-----KLPDWIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 152 ~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~ 222 (261)
...+...+.|+.+.++.|.+...-- ...+..+| +|++|++++ -++ .+...+...+.|+.|.+++|.+...
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 5677888999999999997653211 24577888 999999998 555 3444556678999999999998875
Q ss_pred hhHH----h-ccCCcccceEec-cccccee
Q 042184 223 PIRV----L-HALPNLLQLRLA-GTYNYEL 246 (261)
Q Consensus 223 ~~~~----~-~~~~~L~~L~l~-n~~~~~~ 246 (261)
.... + ...|+|+++++. |.++.+.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 4332 2 348999999999 9887654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=1.2e-11 Score=104.47 Aligned_cols=176 Identities=27% Similarity=0.386 Sum_probs=145.5
Q ss_pred ccCccccceeecCCCCCCCCcccccCcc-cccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLL-NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
+...+.++.+++.++.+..++....... +|+.|++++|.+..+|..++.+++|+.|++++|++..++......++|+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 4455789999999999999988877775 999999999999988777899999999999999999998877789999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE 162 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 162 (261)
++++|+++ .+|........|+.+.++++ ....+..+..+.++..+.+.+ +.....+..++.+++++
T Consensus 192 ~ls~N~i~-----------~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~--n~~~~~~~~~~~l~~l~ 258 (394)
T COG4886 192 DLSGNKIS-----------DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN--NKLEDLPESIGNLSNLE 258 (394)
T ss_pred eccCCccc-----------cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC--ceeeeccchhccccccc
Confidence 99999654 66666566667999999998 667777888888888888655 44444467788888999
Q ss_pred eEEEeecccccccccccccCCccccceEEEec-cCc
Q 042184 163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK 197 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~ 197 (261)
.|++++|.+..... +..+. +++.|++++ .+.
T Consensus 259 ~L~~s~n~i~~i~~---~~~~~-~l~~L~~s~n~~~ 290 (394)
T COG4886 259 TLDLSNNQISSISS---LGSLT-NLRELDLSGNSLS 290 (394)
T ss_pred eecccccccccccc---ccccC-ccCEEeccCcccc
Confidence 99999998764433 66677 899999988 655
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=9.2e-12 Score=97.04 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=67.3
Q ss_pred CCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhcc
Q 042184 55 LGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKL 133 (261)
Q Consensus 55 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~ 133 (261)
.-|+++|+++|.++.+.....-.|.++.|++++|.++ .+ ..++.+++|+.|++++| ......+-.++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-----------~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-----------TV-QNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee-----------ee-hhhhhcccceEeecccchhHhhhhhHhhh
Confidence 4455666666665555555555566666666665443 11 22455556666666665 44444444555
Q ss_pred ccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcC
Q 042184 134 RQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK 198 (261)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~ 198 (261)
.++++|.+++ +..+ -...++++.+|..||+.+|.+.....+..++.+| +|+.+.+.+ .+..
T Consensus 352 GNIKtL~La~--N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 352 GNIKTLKLAQ--NKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPLAG 413 (490)
T ss_pred cCEeeeehhh--hhHh-hhhhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCccc
Confidence 5555665554 2222 2234555555666666666555444444455555 555555555 4443
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.5e-12 Score=98.46 Aligned_cols=195 Identities=16% Similarity=0.079 Sum_probs=102.5
Q ss_pred ccccEEEecCCCce--ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184 32 LNLHYLSLRNKKVK--IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF 108 (261)
Q Consensus 32 ~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 108 (261)
+.|+++|++...++ .+-..++.|.+|+.|.+.++++. .+...+..-.+|+.++++.++-- ....+.-.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~--------t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF--------TENALQLLL 256 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc--------chhHHHHHH
Confidence 34666666666655 33344556666666666666655 55555666666666666655311 111222345
Q ss_pred cCCCCCCeEecccc---chHHHHHHhc-cccccEEEeec--cCCCccchHHHHhCCCCCceEEEeecccccccccccccC
Q 042184 109 GSLTNLQKLCIIEA---DSEVLKELMK-LRQLRKLSIRP--QNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSN 182 (261)
Q Consensus 109 ~~~~~L~~L~l~~~---~~~~~~~l~~-~~~L~~L~l~~--~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 182 (261)
.+|+.|..|++++| ...+...+.. -+.|..|+++| .+.....+......++++.+||+++|......-+..+-.
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 56667777777776 2222222222 25666666766 222222333344567777777777764443322234556
Q ss_pred CccccceEEEec--cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184 183 PPQYLQRLYFKG--DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ 235 (261)
Q Consensus 183 ~~~~L~~L~l~~--~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 235 (261)
++ .|++|.++. .+. +-.-.+...|.|.+|+..+|--.....-....+++|+.
T Consensus 337 f~-~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 337 FN-YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred cc-hheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 66 777777765 332 22123555677777777776433222222334555544
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=7e-11 Score=87.18 Aligned_cols=101 Identities=31% Similarity=0.457 Sum_probs=29.7
Q ss_pred CcccccEEEecCCCceecccccC-CCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184 30 SLLNLHYLSLRNKKVKIIPKSIG-NLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF 108 (261)
Q Consensus 30 ~l~~L~~L~l~~~~i~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 108 (261)
+..+++.|++.+|.|+.+. .++ .+.+|++|++++|.++.+. ++..+++|++|++++|.++ .+...+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-----------~i~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-----------SISEGL 83 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS--------------S-CHHH
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-----------ccccch
Confidence 4456788888888877653 344 5778888888888887664 4667788888888888554 333222
Q ss_pred -cCCCCCCeEecccc---chHHHHHHhccccccEEEeec
Q 042184 109 -GSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 109 -~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~ 143 (261)
..+++|+.|.+++| .......+..+++|+.|++.+
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 24566677766666 111223444555555555554
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.3e-10 Score=90.50 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=18.1
Q ss_pred cccccEEEecCCCce---ecccccCCCCCCcEEeCCCCccc
Q 042184 31 LLNLHYLSLRNKKVK---IIPKSIGNLLGLESLDLKNTLVR 68 (261)
Q Consensus 31 l~~L~~L~l~~~~i~---~~~~~l~~l~~L~~L~l~~~~~~ 68 (261)
+++++.+++.+|.|+ ++...+..+|.|++|+++.|++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 444555555555444 33333444555555555555444
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.5e-11 Score=94.38 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=98.6
Q ss_pred ccEEEecCCCceeccc--cc-CCCCCCcEEeCCCCccc---ccchHhhccccccceeccceecccCchhhhhhhhhcCCc
Q 042184 34 LHYLSLRNKKVKIIPK--SI-GNLLGLESLDLKNTLVR---ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG 107 (261)
Q Consensus 34 L~~L~l~~~~i~~~~~--~l-~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 107 (261)
+..+.+.++.|....+ .+ ..+..++.+|+.+|.++ ++...+.++|.|+.|+++.|++.. .+..+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-------~I~~lp-- 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-------DIKSLP-- 117 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-------ccccCc--
Confidence 3344555554442221 12 24566777777777766 344455667777777777776654 444444
Q ss_pred ccCCCCCCeEecccc---chHHHHHHhccccccEEEeeccC--------CCcc--------------------chHHHHh
Q 042184 108 FGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQN--------GNGK--------------------DLCVLIA 156 (261)
Q Consensus 108 ~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~--------~~~~--------------------~~~~~l~ 156 (261)
....+|+.|.+.+. +...-..+..+|.++.|+++.++ ...+ .....-.
T Consensus 118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 23456667766665 33344445555555555444310 0000 1111122
Q ss_pred CCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCC--ccccCCCcccEEEeccCCCCCChhH------Hh
Q 042184 157 NLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLP--DWIFKPKNVIRLGLDLSGLTEDPIR------VL 227 (261)
Q Consensus 157 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~------~~ 227 (261)
-++++..+.+..|++.+...-.....+| .+.-|.|+. ++..+. +.+.+++.|+.|.++.+.+.+.... .+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p-~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFP-SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCC-cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 3455556666555444333323344555 555666655 555332 2244566666666666665542211 23
Q ss_pred ccCCcccceEec
Q 042184 228 HALPNLLQLRLA 239 (261)
Q Consensus 228 ~~~~~L~~L~l~ 239 (261)
+.+++++.|+=+
T Consensus 276 aRL~~v~vLNGs 287 (418)
T KOG2982|consen 276 ARLTKVQVLNGS 287 (418)
T ss_pred eeccceEEecCc
Confidence 556666666544
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=5.5e-11 Score=92.77 Aligned_cols=130 Identities=22% Similarity=0.192 Sum_probs=71.0
Q ss_pred ccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184 32 LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL 111 (261)
Q Consensus 32 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (261)
+.|+.+++++|.|+.+.+++.-.|.++.|+++.|.+..+.. +..+++|+.|++++|.++ .+...=..+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-----------~~~Gwh~KL 351 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-----------ECVGWHLKL 351 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-----------hhhhhHhhh
Confidence 44556666666666555555555666666666666555433 555666666666666443 122222234
Q ss_pred CCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccccc
Q 042184 112 TNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEE 173 (261)
Q Consensus 112 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 173 (261)
.++++|.++.|.-...+.+.++-+|..|++.+++...-+-...++++|.|+++.+.+|++..
T Consensus 352 GNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 45566666655223334556666666666665222111223456677777777777776543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=2.5e-09 Score=95.12 Aligned_cols=100 Identities=22% Similarity=0.343 Sum_probs=57.2
Q ss_pred ccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184 34 LHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL 111 (261)
Q Consensus 34 L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (261)
++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++ .+|..++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg----------~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG----------SIPESLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC----------CCchHHhcC
Confidence 555666666655 55555666666666666666655 555556666666666666665543 455556666
Q ss_pred CCCCeEecccc--chHHHHHHhcc-ccccEEEeec
Q 042184 112 TNLQKLCIIEA--DSEVLKELMKL-RQLRKLSIRP 143 (261)
Q Consensus 112 ~~L~~L~l~~~--~~~~~~~l~~~-~~L~~L~l~~ 143 (261)
++|+.|++++| .+.+|..+... .++..+++.+
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 66666666665 44455444432 2344455544
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=2.1e-09 Score=98.03 Aligned_cols=198 Identities=25% Similarity=0.297 Sum_probs=133.1
Q ss_pred ccccceeecCCCCCCCCcccccCcccccEEEecCCC--ceecccc-cCCCCCCcEEeCCCCc-ccccchHhhccccccce
Q 042184 8 FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKK--VKIIPKS-IGNLLGLESLDLKNTL-VRELPVEIRNLKKLRYL 83 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~--i~~~~~~-l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L 83 (261)
....+.+.+-++.+..++... .+++|+.|-+.+|. +..++.. +..++.|++||+++|. +..+|..++.+-+|++|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 345666777777666554432 45689999998886 5555543 6789999999999886 55999999999999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccC-CCccchHHHHhCCCC
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQN-GNGKDLCVLIANLEN 160 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~ 160 (261)
+++++ .+..+|..+++++.|.+|++..+ ....+.....+++|++|.+.... .........+..+.+
T Consensus 601 ~L~~t-----------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 601 DLSDT-----------GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred cccCC-----------CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 99998 45689999999999999999887 33446667779999999998722 333344556666777
Q ss_pred CceEEEeecccccccccccccCCc---cccceEEEec-cCcCCCccccCCCcccEEEeccCCCC
Q 042184 161 LENLIVLMKSKEEVLDLQSLSNPP---QYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLT 220 (261)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~~~~~---~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~ 220 (261)
|+.+++...... -...+.... ...+.+.+.+ .....+..+..+.+|+.|.+.+|...
T Consensus 670 L~~ls~~~~s~~---~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 670 LENLSITISSVL---LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhheeecchhH---hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 777776543220 001111122 1122233222 22344445566777777777777664
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=4.9e-09 Score=63.85 Aligned_cols=58 Identities=33% Similarity=0.498 Sum_probs=32.3
Q ss_pred cccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCc
Q 042184 9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTL 66 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~ 66 (261)
|+|++|++++|.+..++ ..+..+++|++|++++|.++.++ ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34566666666555444 34455666666666666655333 245556666666665554
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.80 E-value=1.1e-09 Score=84.41 Aligned_cols=234 Identities=15% Similarity=0.087 Sum_probs=150.4
Q ss_pred CccccceeecCCCCCC-C----CcccccCcccccEEEecCCCc---e-eccc-------ccCCCCCCcEEeCCCCccc-c
Q 042184 7 NFKLMKVLDLEDAPVV-Y----LPEGVGSLLNLHYLSLRNKKV---K-IIPK-------SIGNLLGLESLDLKNTLVR-E 69 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~-~----~~~~~~~l~~L~~L~l~~~~i---~-~~~~-------~l~~l~~L~~L~l~~~~~~-~ 69 (261)
.+..++.+++++|.|. + +...+++-.+|++.++++-.. . ++++ .+.+||+|+.+++++|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4567888999999888 2 445566678888888886432 2 4443 3467899999999999877 4
Q ss_pred cch----HhhccccccceeccceecccCchhhhhhhh------hcCCcccCCCCCCeEecccc-----chH-HHHHHhcc
Q 042184 70 LPV----EIRNLKKLRYLMVYQYYFTSGSSIAEEAAA------KLHPGFGSLTNLQKLCIIEA-----DSE-VLKELMKL 133 (261)
Q Consensus 70 ~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~l~~~~~~~~~L~~L~l~~~-----~~~-~~~~l~~~ 133 (261)
.|. .++....|.+|.+++|.+.+ ++++.+. ..-.-..+-|.|+......| +.. ....+...
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp---~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGP---IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCc---cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 443 45677889999999997643 3443443 12234456678999988887 222 22335555
Q ss_pred ccccEEEeeccCCCccc----hHHHHhCCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCc-----CCC
Q 042184 134 RQLRKLSIRPQNGNGKD----LCVLIANLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMK-----KLP 200 (261)
Q Consensus 134 ~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~-----~l~ 200 (261)
..|+.+.+..+....+. ....+..+.+|+.||+.+|.++..-. ...+..++ .|+.|.+.+ -++ .+.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHHHH
Confidence 68888888762222221 12345677899999999997763211 13356677 788888876 443 222
Q ss_pred cccc--CCCcccEEEeccCCCCCChhHH-----h--ccCCcccceEec-ccccc
Q 042184 201 DWIF--KPKNVIRLGLDLSGLTEDPIRV-----L--HALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 201 ~~~~--~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~L~l~-n~~~~ 244 (261)
..+. ..|+|..|...+|...+..... + .++|-|..|.+. |.++.
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 2222 2678888888888766543221 1 357888888888 77754
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=1e-09 Score=93.17 Aligned_cols=194 Identities=21% Similarity=0.279 Sum_probs=114.3
Q ss_pred CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184 7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY 86 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 86 (261)
.+..++.+.+..+.+..+-..+..+++|..+++.+|.+..+...+..+++|++|++++|.++.+. .+..++.|+.|+++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 34555566666666665434466778888888888888866554677888888888888887663 35666668888888
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHH-HhccccccEEEeeccCCCccchHHHHhCCCCCceE
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKE-LMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL 164 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 164 (261)
+|.++. ...+..++.|+.+++++| ....... ...+.+++.+.+.+ +... ....+.....+..+
T Consensus 149 ~N~i~~------------~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~--n~i~-~i~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 149 GNLISD------------ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG--NSIR-EIEGLDLLKKLVLL 213 (414)
T ss_pred cCcchh------------ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC--Cchh-cccchHHHHHHHHh
Confidence 886641 233444777888888887 2222221 46667777777765 1111 11222233333344
Q ss_pred EEeecccccccccccccCCccc--cceEEEec-cCcCCCccccCCCcccEEEeccCCCC
Q 042184 165 IVLMKSKEEVLDLQSLSNPPQY--LQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLT 220 (261)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~~~~--L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~ 220 (261)
++..|.+....+ +...+ . |+.+++.+ .+...+..+..+..+..+++..+++.
T Consensus 214 ~l~~n~i~~~~~---l~~~~-~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 214 SLLDNKISKLEG---LNELV-MLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccccceeccC---cccch-hHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 555554433222 11222 2 56666666 56555444555666666666666554
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=1.2e-08 Score=62.10 Aligned_cols=58 Identities=41% Similarity=0.555 Sum_probs=49.2
Q ss_pred ccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccc-hHhhccccccceecccee
Q 042184 32 LNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 32 ~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 89 (261)
++|++|++++|+++.+|. .+..+++|++|++++|.+..++ ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999997774 5788999999999999998664 467889999999999885
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=3.9e-08 Score=87.58 Aligned_cols=103 Identities=20% Similarity=0.422 Sum_probs=90.7
Q ss_pred ccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccceecc
Q 042184 10 LMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVY 86 (261)
Q Consensus 10 ~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 86 (261)
.++.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998 88899999999999999999998 89989999999999999999998 889999999999999999
Q ss_pred ceecccCchhhhhhhhhcCCcccCC-CCCCeEecccc
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSL-TNLQKLCIIEA 122 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~ 122 (261)
+|++++ .+|..+... .++..+++.+|
T Consensus 499 ~N~l~g----------~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSG----------RVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccc----------cCChHHhhccccCceEEecCC
Confidence 998876 566666543 45678888877
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=8.5e-09 Score=87.65 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=131.1
Q ss_pred cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
.+..+++|+.+++.+|.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+|.+..+.. +..+++|+.+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 367789999999999999977665778999999999999999763 46778889999999999986643 5558999999
Q ss_pred eccceecccCchhhhhhhhhcCCc-ccCCCCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCC--C
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLE--N 160 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~ 160 (261)
++++|.+. .+... ...+.+++.+.+.++.......+.....+..+++.. +.... ...+.... .
T Consensus 168 ~l~~n~i~-----------~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~-n~i~~--~~~l~~~~~~~ 233 (414)
T KOG0531|consen 168 DLSYNRIV-----------DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLD-NKISK--LEGLNELVMLH 233 (414)
T ss_pred cCCcchhh-----------hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccc-cccee--ccCcccchhHH
Confidence 99999764 22221 567788999999888222222222222222223322 11000 01111112 2
Q ss_pred CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC--hhHH--hccCCcccc
Q 042184 161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED--PIRV--LHALPNLLQ 235 (261)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~ 235 (261)
|+.+++++|++.... ..+..+. .+..+++.. .+..+.. +...+.+..+...++.+... .... ....+.++.
T Consensus 234 L~~l~l~~n~i~~~~--~~~~~~~-~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP--EGLENLK-NLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVT 309 (414)
T ss_pred HHHHhcccCcccccc--ccccccc-cccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccccccccccc
Confidence 667777776554221 2244455 666666665 4443322 33344555555555544321 1111 234455555
Q ss_pred eEec-ccc
Q 042184 236 LRLA-GTY 242 (261)
Q Consensus 236 L~l~-n~~ 242 (261)
..+. |+.
T Consensus 310 ~~~~~~~~ 317 (414)
T KOG0531|consen 310 LTLELNPI 317 (414)
T ss_pred cccccCcc
Confidence 5555 444
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=1.1e-07 Score=73.62 Aligned_cols=216 Identities=16% Similarity=0.154 Sum_probs=139.6
Q ss_pred ccccCcccccEEEecCCCce-e----cccccCCCCCCcEEeCCCCccc----ccc-------hHhhccccccceecccee
Q 042184 26 EGVGSLLNLHYLSLRNKKVK-I----IPKSIGNLLGLESLDLKNTLVR----ELP-------VEIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 26 ~~~~~l~~L~~L~l~~~~i~-~----~~~~l~~l~~L~~L~l~~~~~~----~~~-------~~~~~l~~L~~L~l~~~~ 89 (261)
..+..+..+..+++++|.|. + +...+.+-.+|+..++++-... .++ +.+..||.|+.+++|.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 33445788999999999987 3 3344566788998888864322 233 345689999999999998
Q ss_pred cccCchhhhhhhhhcCCcccCCCCCCeEecccc------chHHHHH---------HhccccccEEEeeccC---CCccch
Q 042184 90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA------DSEVLKE---------LMKLRQLRKLSIRPQN---GNGKDL 151 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~------~~~~~~~---------l~~~~~L~~L~l~~~~---~~~~~~ 151 (261)
+... ....+...++..+.|++|.+++| .+.+-.. ...-|.|+.+....+. ......
T Consensus 104 fg~~------~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 104 FGSE------FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred cCcc------cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence 8653 34444556778889999999998 2222222 2233678888776511 111222
Q ss_pred HHHHhCCCCCceEEEeecccccc--cc--cccccCCccccceEEEec-cCc-----CCCccccCCCcccEEEeccCCCCC
Q 042184 152 CVLIANLENLENLIVLMKSKEEV--LD--LQSLSNPPQYLQRLYFKG-DMK-----KLPDWIFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 152 ~~~l~~~~~L~~L~l~~n~~~~~--~~--~~~~~~~~~~L~~L~l~~-~l~-----~l~~~~~~~~~L~~L~l~~~~~~~ 221 (261)
...+..-.+|+.+.+..|.+... .. ...+..+. +|+.|++++ .++ -+...+..-+.|+.|.+.+|-++.
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~-~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH-SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC-cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 33455557899999999976532 11 12233445 899999998 555 222233334568999999998876
Q ss_pred ChhHHh------ccCCcccceEec-ccccceeeE
Q 042184 222 DPIRVL------HALPNLLQLRLA-GTYNYELFH 248 (261)
Q Consensus 222 ~~~~~~------~~~~~L~~L~l~-n~~~~~~~~ 248 (261)
.....+ ...|+|..|.+. |...+..+.
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence 544332 247888888888 777655543
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=8.7e-09 Score=83.83 Aligned_cols=80 Identities=21% Similarity=0.182 Sum_probs=40.3
Q ss_pred ccceeecCCCC-CC--CCcccccCcccccEEEecCCC-ce-e-cccccCCCCCCcEEeCCCCc-cc--ccchHhhccccc
Q 042184 10 LMKVLDLEDAP-VV--YLPEGVGSLLNLHYLSLRNKK-VK-I-IPKSIGNLLGLESLDLKNTL-VR--ELPVEIRNLKKL 80 (261)
Q Consensus 10 ~L~~L~l~~~~-l~--~~~~~~~~l~~L~~L~l~~~~-i~-~-~~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~~l~~L 80 (261)
-|+.|.+.++. .. .+-..-..+++++.|.+.++. ++ . .-..-..+++|++|++..|. ++ .+-.....|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35666666662 22 222233456666666666654 33 1 11112356666666666643 33 111123346666
Q ss_pred cceecccee
Q 042184 81 RYLMVYQYY 89 (261)
Q Consensus 81 ~~L~l~~~~ 89 (261)
+++++++|.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 666666654
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=1.1e-08 Score=83.18 Aligned_cols=226 Identities=18% Similarity=0.118 Sum_probs=140.4
Q ss_pred ccCccccceeecCCC-CCC-CCcccc-cCcccccEEEecCCC-ce-eccc-ccCCCCCCcEEeCCCCc-cc--ccchHhh
Q 042184 5 IANFKLMKVLDLEDA-PVV-YLPEGV-GSLLNLHYLSLRNKK-VK-IIPK-SIGNLLGLESLDLKNTL-VR--ELPVEIR 75 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~-~l~-~~~~~~-~~l~~L~~L~l~~~~-i~-~~~~-~l~~l~~L~~L~l~~~~-~~--~~~~~~~ 75 (261)
-.+||+++.|++.+| .++ ..-..+ ..|++|+.+++..|. ++ .... ....+++|++++++++. ++ .+.....
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 357888888888888 444 222233 367888888888854 55 2222 33578888888888875 44 3333445
Q ss_pred ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccCCCccch
Q 042184 76 NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQNGNGKDL 151 (261)
Q Consensus 76 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 151 (261)
.+..++.+...+|.-. ....+...-+.+..+..+++..| ...+...-..+..|+.+..+++.......
T Consensus 240 G~~~l~~~~~kGC~e~--------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~ 311 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLEL--------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV 311 (483)
T ss_pred cchhhhhhhhcccccc--------cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH
Confidence 5666777766655211 12223333344555666666565 23344445567788888888755555555
Q ss_pred HHHHh-CCCCCceEEEeeccccccccccccc-CCccccceEEEec-cC-c--CCCccccCCCcccEEEeccCC-CCCChh
Q 042184 152 CVLIA-NLENLENLIVLMKSKEEVLDLQSLS-NPPQYLQRLYFKG-DM-K--KLPDWIFKPKNVIRLGLDLSG-LTEDPI 224 (261)
Q Consensus 152 ~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~~L~~L~l~~-~l-~--~l~~~~~~~~~L~~L~l~~~~-~~~~~~ 224 (261)
...++ .+.+|+.+.++++..-+...+..+. .++ +|+.+++.+ .. + ++......|+.|+.++++.|. ++++..
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~-~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP-HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh-hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 55555 6789999999988644443333333 355 899998887 33 3 455545578999999999885 455433
Q ss_pred HHh----ccCCcccceEec
Q 042184 225 RVL----HALPNLLQLRLA 239 (261)
Q Consensus 225 ~~~----~~~~~L~~L~l~ 239 (261)
..+ .....|+.+.+.
T Consensus 391 ~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred hhhhhccccccccceeeec
Confidence 333 346788888888
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=3.2e-07 Score=51.43 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=17.8
Q ss_pred cccEEEecCCCceecccccCCCCCCcEEeCCCCcccc
Q 042184 33 NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE 69 (261)
Q Consensus 33 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~ 69 (261)
+|++|++++|.|+.+|..++++++|++|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3455555555555444444555555555555555443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=4.4e-07 Score=50.86 Aligned_cols=40 Identities=33% Similarity=0.460 Sum_probs=25.9
Q ss_pred cccceeecCCCCCCCCcccccCcccccEEEecCCCceecc
Q 042184 9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP 48 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~ 48 (261)
++|++|++++|+|+++|..++.|++|+.|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4567777777777766666677777777777777666443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.31 E-value=3.2e-07 Score=81.95 Aligned_cols=147 Identities=24% Similarity=0.265 Sum_probs=77.9
Q ss_pred ccccEEEecCCC-ce-eccccc-CCCCCCcEEeCCCCccc--ccchHhhccccccceeccceecccCchhhhhhhhhcCC
Q 042184 32 LNLHYLSLRNKK-VK-IIPKSI-GNLLGLESLDLKNTLVR--ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHP 106 (261)
Q Consensus 32 ~~L~~L~l~~~~-i~-~~~~~l-~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 106 (261)
.+|+.|++++.. +. .=|..+ ..+|+|++|.+.+-.+. .+.+...++|+|..||+|+++++ .+ .
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-----------nl-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-----------NL-S 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-----------Cc-H
Confidence 557777776643 22 111222 24577777777665544 33344556777777777776543 22 5
Q ss_pred cccCCCCCCeEecccc---chHHHHHHhccccccEEEeecc-CCCccch----HHHHhCCCCCceEEEeecccccccccc
Q 042184 107 GFGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQ-NGNGKDL----CVLIANLENLENLIVLMKSKEEVLDLQ 178 (261)
Q Consensus 107 ~~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~----~~~l~~~~~L~~L~l~~n~~~~~~~~~ 178 (261)
+++.+++|+.|.+.+- .......+..+++|++|+++.. ....... ...-..+|+|+.||.++..+....--.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 6666677777766554 3344455666777777777761 1111111 111224677777777776554332212
Q ss_pred cccCCccccceEE
Q 042184 179 SLSNPPQYLQRLY 191 (261)
Q Consensus 179 ~~~~~~~~L~~L~ 191 (261)
.+...| +|+.+.
T Consensus 270 ll~sH~-~L~~i~ 281 (699)
T KOG3665|consen 270 LLNSHP-NLQQIA 281 (699)
T ss_pred HHHhCc-cHhhhh
Confidence 233344 555443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=5.9e-08 Score=67.40 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=69.3
Q ss_pred ccceeecCCCCCCCCcccc---cCcccccEEEecCCCceecccccC-CCCCCcEEeCCCCcccccchHhhccccccceec
Q 042184 10 LMKVLDLEDAPVVYLPEGV---GSLLNLHYLSLRNKKVKIIPKSIG-NLLGLESLDLKNTLVRELPVEIRNLKKLRYLMV 85 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~---~~l~~L~~L~l~~~~i~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 85 (261)
.+..++++.|++..+++.. ....+|...++++|.+.+.|..+. +.+.++++++++|.+..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4556777777766554433 345667777888888777776654 455788888888888888877888888888888
Q ss_pred cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
+.|.+. ..|..+..+.++..|+..++
T Consensus 108 ~~N~l~-----------~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 108 RFNPLN-----------AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccCccc-----------cchHHHHHHHhHHHhcCCCC
Confidence 887553 44555555566666666555
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=1.2e-08 Score=88.63 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccc
Q 042184 56 GLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLR 134 (261)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~ 134 (261)
.|.+.+.++|.+..+...+.-++.|+.|++++|+++. +. .+..|++|++|++++| ...++..-..-.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-----------v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-----------VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC 232 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-----------hH-HHHhcccccccccccchhccccccchhhh
Confidence 3445555555555444555555566666666665431 11 4555556666666655 222221111111
Q ss_pred cccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec
Q 042184 135 QLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG 194 (261)
Q Consensus 135 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 194 (261)
.|+.|.+.+ +.. .-...+.++.+|+.||+++|-+.+...+..+..+. .|+.|+|.+
T Consensus 233 ~L~~L~lrn--N~l-~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeG 288 (1096)
T KOG1859|consen 233 KLQLLNLRN--NAL-TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEG 288 (1096)
T ss_pred hheeeeecc--cHH-HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcC
Confidence 255555554 111 12234555556666666666544433333333444 555555555
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=2.8e-08 Score=86.35 Aligned_cols=121 Identities=22% Similarity=0.221 Sum_probs=66.2
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 89 (261)
+|...++++|.+..+..++.-++.++.|+|+.|+++++. .+..+++|++||+++|++..+|..-..-.+|+.|++++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH
Confidence 355555566655545455555566666666666666443 4556666666666666666554421111226666666664
Q ss_pred cccCchhhhhhhhhcCCcccCCCCCCeEecccc---chHHHHHHhccccccEEEeec
Q 042184 90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~ 143 (261)
++ --..+.++.+|+.|++++| ...-...+..+..|+.|.+.|
T Consensus 244 l~------------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 244 LT------------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred HH------------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 42 1234455566666666666 222233345555566666655
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.20 E-value=9.2e-07 Score=79.10 Aligned_cols=123 Identities=24% Similarity=0.256 Sum_probs=58.8
Q ss_pred CCCeEecccc---chHHHHHHh-ccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccc
Q 042184 113 NLQKLCIIEA---DSEVLKELM-KLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQ 188 (261)
Q Consensus 113 ~L~~L~l~~~---~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 188 (261)
+|+.|++++. ....+..++ .+|+|+.|.+.+.....+++.+...++++|..||+++..+... ..++.+. +|+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk-nLq 198 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK-NLQ 198 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc-cHH
Confidence 4555555554 222333322 3466666666553333334455555666666666666544322 2344555 566
Q ss_pred eEEEec-cCcCCC--ccccCCCcccEEEeccCCCCCCh--h----HHhccCCcccceEec
Q 042184 189 RLYFKG-DMKKLP--DWIFKPKNVIRLGLDLSGLTEDP--I----RVLHALPNLLQLRLA 239 (261)
Q Consensus 189 ~L~l~~-~l~~l~--~~~~~~~~L~~L~l~~~~~~~~~--~----~~~~~~~~L~~L~l~ 239 (261)
+|.+.+ .+..-. ..+..+.+|+.||+|........ . +.-..+|+|+.||.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 665555 444211 12344566666666555433221 1 111235566666655
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=2.4e-07 Score=64.41 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=81.5
Q ss_pred cccccEEEecCCCcee---cccccCCCCCCcEEeCCCCcccccchHhhc-cccccceeccceecccCchhhhhhhhhcCC
Q 042184 31 LLNLHYLSLRNKKVKI---IPKSIGNLLGLESLDLKNTLVRELPVEIRN-LKKLRYLMVYQYYFTSGSSIAEEAAAKLHP 106 (261)
Q Consensus 31 l~~L~~L~l~~~~i~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 106 (261)
-..+..+++++|++-. .+..+.....|..+++++|.+..+|..+.. .+.++.+++++| .+.++|.
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-----------eisdvPe 94 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-----------EISDVPE 94 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-----------hhhhchH
Confidence 3557778888987663 344566778899999999999988887764 568999999999 5568999
Q ss_pred cccCCCCCCeEecccc-chHHHHHHhccccccEEEeec
Q 042184 107 GFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 107 ~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~ 143 (261)
++..++.|+.|++..| ....+..+..+.++..|+..+
T Consensus 95 E~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred HHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 9999999999999999 556667666687887887765
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.07 E-value=3.6e-06 Score=62.46 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=72.4
Q ss_pred cceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhc-cccccceecccee
Q 042184 11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRN-LKKLRYLMVYQYY 89 (261)
Q Consensus 11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~ 89 (261)
=+++++.+.++..+...-.-+.+...+++.+|.+..++ .+..++.|.+|.+++|.++.+.+.+.. +++|+.|.+.+|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 34555555555433221113355667777777766543 356677788888888888866655554 5678888888876
Q ss_pred cccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH----HHHHHhccccccEEEeec
Q 042184 90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE----VLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~----~~~~l~~~~~L~~L~l~~ 143 (261)
+. ..+++ ..+..||+|+.|.+-+| ... ..-.+.++|+|+.|+...
T Consensus 100 i~--------~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 IQ--------ELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hh--------hhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 53 12222 34566777777777666 111 111245566666666654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=7.3e-06 Score=68.26 Aligned_cols=134 Identities=20% Similarity=0.242 Sum_probs=79.2
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCC-ceecccccCCCCCCcEEeCCCC-cccccchHhhccccccc
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKK-VKIIPKSIGNLLGLESLDLKNT-LVRELPVEIRNLKKLRY 82 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~ 82 (261)
+..|+++++|++++|.++.+|. + -.+|+.|.+++|. ++.+|+.+ ..+|++|.+++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 3457888899999888887772 2 1458888888754 55777654 357888888887 4555553 3666
Q ss_pred eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184 83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANL 158 (261)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 158 (261)
|+++.+... .+..+|. .|+.|.+..+ ....+. .-.++|+.|.+.++... ..|..+.
T Consensus 117 L~L~~n~~~--------~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i--~LP~~LP-- 176 (426)
T PRK15386 117 LEIKGSATD--------SIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI--ILPEKLP-- 176 (426)
T ss_pred EEeCCCCCc--------ccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcc--cCccccc--
Confidence 666655432 2344554 3556655332 111110 12257888888763322 2232222
Q ss_pred CCCceEEEeec
Q 042184 159 ENLENLIVLMK 169 (261)
Q Consensus 159 ~~L~~L~l~~n 169 (261)
.+|++|+++.+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 47888888765
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=1.8e-05 Score=66.03 Aligned_cols=134 Identities=20% Similarity=0.171 Sum_probs=70.7
Q ss_pred cCcccccEEEecCCCceecccccCCCCCCcEEeCCCCc-ccccchHhhccccccceeccceecccCchhhhhhhhhcCCc
Q 042184 29 GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTL-VRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG 107 (261)
Q Consensus 29 ~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 107 (261)
..+.+++.|++++|.++.+|. -..+|++|.+++|. ++.+|..+ .++|++|++++|.. +..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~----------L~sLP~- 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPE----------ISGLPE- 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccc----------cccccc-
Confidence 346788888888887777772 12468888887754 45566544 24688888887731 223443
Q ss_pred ccCCCCCCeEecccc-chHHHHHHhcc-ccccEEEeeccC-CCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184 108 FGSLTNLQKLCIIEA-DSEVLKELMKL-RQLRKLSIRPQN-GNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP 184 (261)
Q Consensus 108 ~~~~~~L~~L~l~~~-~~~~~~~l~~~-~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 184 (261)
.|+.|.+..+ ... +..+ ++|+.|.+.+.+ ......+.. -.++|++|++++|.... .+ ..+|
T Consensus 113 -----sLe~L~L~~n~~~~----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP----~~LP 176 (426)
T PRK15386 113 -----SVRSLEIKGSATDS----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LP----EKLP 176 (426)
T ss_pred -----ccceEEeCCCCCcc----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cc----cccc
Confidence 4666666544 111 1112 245555553211 000011100 11467777777665331 11 2244
Q ss_pred cccceEEEec
Q 042184 185 QYLQRLYFKG 194 (261)
Q Consensus 185 ~~L~~L~l~~ 194 (261)
.+|+.|.++.
T Consensus 177 ~SLk~L~ls~ 186 (426)
T PRK15386 177 ESLQSITLHI 186 (426)
T ss_pred ccCcEEEecc
Confidence 4777777755
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=2.3e-05 Score=58.26 Aligned_cols=105 Identities=24% Similarity=0.253 Sum_probs=80.0
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccC-CCCCCcEEeCCCCcccccc--hHhhccccccceecc
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIG-NLLGLESLDLKNTLVRELP--VEIRNLKKLRYLMVY 86 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~-~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~ 86 (261)
....+|+++|.+..++ .+..++.|..|.+++|+|+.+...+. -+++|.+|.+.+|.+.++. ..+..||+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4567888888877442 35678999999999999996666554 4688999999999988443 357789999999999
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
+|..+. ....-...+..+|+|+.|++.+.
T Consensus 122 ~Npv~~-------k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEH-------KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhc-------ccCceeEEEEecCcceEeehhhh
Confidence 986543 12122245778999999999887
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=5.7e-06 Score=64.52 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=36.3
Q ss_pred cccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCC
Q 042184 33 NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLT 112 (261)
Q Consensus 33 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (261)
+.+.|++-+|.++++ ....+|+.|++|.|+-|.++.+. .+..|++|++|++..|.+.. + .-...+.+++
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s--------l-dEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES--------L-DELEYLKNLP 88 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccccc--------H-HHHHHHhcCc
Confidence 344444444444432 11234555555555555555442 24455555555555554321 1 1112344555
Q ss_pred CCCeEecccc
Q 042184 113 NLQKLCIIEA 122 (261)
Q Consensus 113 ~L~~L~l~~~ 122 (261)
+|+.|++..|
T Consensus 89 sLr~LWL~EN 98 (388)
T KOG2123|consen 89 SLRTLWLDEN 98 (388)
T ss_pred hhhhHhhccC
Confidence 5555555555
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=4.4e-05 Score=58.99 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=63.9
Q ss_pred CcccccEEEecCCCceecccccCCCCCCcEEeCCCC--ccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCC
Q 042184 30 SLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNT--LVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHP 106 (261)
Q Consensus 30 ~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~--~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 106 (261)
.+..|+.+++.+..++.+. .+-.+++|++|.++.| ++. .+......+|+|++++++.|++. +..-..
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---------~lstl~ 110 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---------DLSTLR 110 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---------cccccc
Confidence 4566666666666655332 2446788888888888 444 44444556688888888888763 222333
Q ss_pred cccCCCCCCeEecccc-----chHHHHHHhccccccEEEeec
Q 042184 107 GFGSLTNLQKLCIIEA-----DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 107 ~~~~~~~L~~L~l~~~-----~~~~~~~l~~~~~L~~L~l~~ 143 (261)
.+..+.+|..|++..| ....-..+.-+++|+.|+-..
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 4556667777777777 222334455566666665443
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.54 E-value=1.8e-05 Score=68.64 Aligned_cols=106 Identities=21% Similarity=0.117 Sum_probs=45.1
Q ss_pred ccccceeecCCC-CCCC--CcccccCcccccEEEecCC-C-ceec----ccccCCCCCCcEEeCCCCc-cc--ccchHhh
Q 042184 8 FKLMKVLDLEDA-PVVY--LPEGVGSLLNLHYLSLRNK-K-VKII----PKSIGNLLGLESLDLKNTL-VR--ELPVEIR 75 (261)
Q Consensus 8 ~~~L~~L~l~~~-~l~~--~~~~~~~l~~L~~L~l~~~-~-i~~~----~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~ 75 (261)
++.|+.+.+..+ .+.. +-.....+++|+.|+++++ . +... ......+.+|+.|+++++. ++ .+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555555 3332 2233344555555555542 1 1111 1122334555555555554 33 1111122
Q ss_pred ccccccceecccee-cccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 76 NLKKLRYLMVYQYY-FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 76 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
.|++|+.|.+..|. ++. ..+......++.|++|+++++
T Consensus 267 ~c~~L~~L~l~~c~~lt~---------~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTD---------EGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccch---------hHHHHHHHhcCcccEEeeecC
Confidence 25555555555443 221 122333344555555555555
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.35 E-value=5.1e-05 Score=65.79 Aligned_cols=126 Identities=24% Similarity=0.211 Sum_probs=59.8
Q ss_pred cccccEEEecCCC-cee--cccccCCCCCCcEEeCCCC-c-ccc----cchHhhccccccceecccee-cccCchhhhhh
Q 042184 31 LLNLHYLSLRNKK-VKI--IPKSIGNLLGLESLDLKNT-L-VRE----LPVEIRNLKKLRYLMVYQYY-FTSGSSIAEEA 100 (261)
Q Consensus 31 l~~L~~L~l~~~~-i~~--~~~~l~~l~~L~~L~l~~~-~-~~~----~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~ 100 (261)
++.|+.+.+.++. +.. +-.....+++|+.|+++++ . +.. .......+++|+.++++++. .+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-------- 258 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-------- 258 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc--------
Confidence 4666666666553 332 2233445666777766652 1 111 11223345666666666665 221
Q ss_pred hhhcCCcccCCCCCCeEecccc----chHHHHHHhccccccEEEeeccCCC-ccchHHHHhCCCCCceEE
Q 042184 101 AAKLHPGFGSLTNLQKLCIIEA----DSEVLKELMKLRQLRKLSIRPQNGN-GKDLCVLIANLENLENLI 165 (261)
Q Consensus 101 ~~~l~~~~~~~~~L~~L~l~~~----~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~ 165 (261)
..+......|++|+.|.+..+ ...+......+++|+.|++.++... ...+.....++++++.+.
T Consensus 259 -~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 259 -IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred -hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 111111222566666665555 2334444555666666666653322 122333333455555444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=8.2e-05 Score=57.53 Aligned_cols=106 Identities=19% Similarity=0.247 Sum_probs=68.3
Q ss_pred ccccceeecCCCCCCCCcccccCcccccEEEecCC--Cce-ecccccCCCCCCcEEeCCCCccccc--chHhhccccccc
Q 042184 8 FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNK--KVK-IIPKSIGNLLGLESLDLKNTLVREL--PVEIRNLKKLRY 82 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~--~i~-~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~ 82 (261)
+.+|+.+++.++.++.+ ..+-.+++|+.|.++.| ++. .++.....+++|+++++++|.+..+ -..+..+++|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 44566666666655522 22345789999999999 444 5544455679999999999987732 234667888999
Q ss_pred eeccceecccCchhhhhhhhhc-CCcccCCCCCCeEecccc
Q 042184 83 LMVYQYYFTSGSSIAEEAAAKL-HPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~ 122 (261)
|++.+|.-+. .... ...+.-+++|+.|+-...
T Consensus 121 Ldl~n~~~~~--------l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTN--------LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccc--------cccHHHHHHHHhhhhcccccccc
Confidence 9999986542 1110 123445567777765554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1.5e-05 Score=62.23 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=77.7
Q ss_pred CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc--hHhhcccccccee
Q 042184 7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP--VEIRNLKKLRYLM 84 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 84 (261)
++.+.+.|++.+|++.++. .+.+++.|++|.|+-|.|+.+. .+..|.+|+.|.|..|.|..+. ..+.++|+|+.|-
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3567888999999988553 2457899999999999998663 4678999999999999988553 3577899999999
Q ss_pred ccceecccCchhhhhhhh-hcCCcccCCCCCCeEeccc
Q 042184 85 VYQYYFTSGSSIAEEAAA-KLHPGFGSLTNLQKLCIIE 121 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~ 121 (261)
+..|..-+. ... .-...+..+|+|++|+=..
T Consensus 95 L~ENPCc~~------ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 95 LDENPCCGE------AGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred hccCCcccc------cchhHHHHHHHHcccchhccCcc
Confidence 988865431 000 1112455677888876433
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.18 E-value=0.00079 Score=47.27 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=42.6
Q ss_pred ccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccccc-chHhhcccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVREL-PVEIRNLKK 79 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~ 79 (261)
..|.++++|+.+.+.. .+..+. ..+..+++|+.+.+.++ +..++. .+..+.+++.+.+.+ .+..+ ...+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4567777888887774 455443 45667777888877664 554433 356666777777765 33322 234555777
Q ss_pred ccceeccce
Q 042184 80 LRYLMVYQY 88 (261)
Q Consensus 80 L~~L~l~~~ 88 (261)
|+.+.+..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 777777543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.46 E-value=0.0018 Score=30.16 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=9.2
Q ss_pred ccEEEecCCCceeccccc
Q 042184 34 LHYLSLRNKKVKIIPKSI 51 (261)
Q Consensus 34 L~~L~l~~~~i~~~~~~l 51 (261)
|++|++++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.07 E-value=0.0093 Score=41.74 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=35.9
Q ss_pred cccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcc
Q 042184 107 GFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ 185 (261)
Q Consensus 107 ~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 185 (261)
.+..+.+|+.+.+... .......+..+++++.+.+.. .....-...+.++++++.+.+..+ .. ..+...+..++
T Consensus 7 ~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~- 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNN-LK-SIGDNAFSNCT- 81 (129)
T ss_dssp TTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETST-T--EE-TTTTTT-T-
T ss_pred HHhCCCCCCEEEECCCeeEeChhhcccccccccccccc--cccccceeeeeccccccccccccc-cc-ccccccccccc-
Confidence 3444455555555433 111112244444555555543 111111223445555666666431 11 11112344455
Q ss_pred ccceEEEeccCcCCCc-cccCCCcccEEEecc
Q 042184 186 YLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDL 216 (261)
Q Consensus 186 ~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~ 216 (261)
+++.+.+..++..++. .+..+ +|+.+.+..
T Consensus 82 ~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSNITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCccccEEchhhhcCC-CceEEEECC
Confidence 6666665443332222 23334 566665544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.85 E-value=0.0033 Score=29.21 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=10.8
Q ss_pred CCcEEeCCCCcccccchHh
Q 042184 56 GLESLDLKNTLVRELPVEI 74 (261)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~ 74 (261)
+|++|++++|.++.+|..+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 3566666666655555443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.63 E-value=0.00013 Score=62.81 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=17.2
Q ss_pred CcccEEEeccCCCCCChh----HHhccCCcccceEec-ccc
Q 042184 207 KNVIRLGLDLSGLTEDPI----RVLHALPNLLQLRLA-GTY 242 (261)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~-n~~ 242 (261)
+.++.++++.|.+++... ..+..++.++.+.+. |.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 445555555555554322 223344555555555 444
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.46 E-value=0.00028 Score=60.82 Aligned_cols=162 Identities=21% Similarity=0.194 Sum_probs=74.4
Q ss_pred ccCccccceeecCCCCCC--CCc---ccccCc-ccccEEEecCCCce-----ecccccCCCCCCcEEeCCCCccc-----
Q 042184 5 IANFKLMKVLDLEDAPVV--YLP---EGVGSL-LNLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVR----- 68 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~--~~~---~~~~~l-~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~----- 68 (261)
+...+.|..|++++|.+. ... ..+... ..+++|++..|.++ .+...+.....++.++++.|.+.
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 445566666666666655 111 111111 34555666555544 23334445666666666666543
Q ss_pred ccchHhh----ccccccceeccceecccCchhhhhhhhhcCCcccCCCC-CCeEecccc--ch----HHHHHHhcc-ccc
Q 042184 69 ELPVEIR----NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTN-LQKLCIIEA--DS----EVLKELMKL-RQL 136 (261)
Q Consensus 69 ~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~--~~----~~~~~l~~~-~~L 136 (261)
.++..+. ...++++|++.+|..+.. ....+...+...+. +..+++..| .+ .....+..+ +.+
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~------~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l 264 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSS------SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL 264 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChH------HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh
Confidence 2223333 345566666666655431 12222233333333 444555555 11 122233333 444
Q ss_pred cEEEeeccC---CCccchHHHHhCCCCCceEEEeecccc
Q 042184 137 RKLSIRPQN---GNGKDLCVLIANLENLENLIVLMKSKE 172 (261)
Q Consensus 137 ~~L~l~~~~---~~~~~~~~~l~~~~~L~~L~l~~n~~~ 172 (261)
+++++..+. .........+..++.++.+.++.|.+.
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 555554411 112233444455555666665555443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.09 E-value=0.014 Score=25.22 Aligned_cols=8 Identities=38% Similarity=0.484 Sum_probs=3.0
Q ss_pred cEEEecCC
Q 042184 35 HYLSLRNK 42 (261)
Q Consensus 35 ~~L~l~~~ 42 (261)
+.|++++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.36 E-value=0.0025 Score=48.92 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=71.0
Q ss_pred CCc-ccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhh
Q 042184 23 YLP-EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAA 101 (261)
Q Consensus 23 ~~~-~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 101 (261)
.+| ..++.....+.||++.|++..+...++.+..+..|+++.|.+...|.++.....++.++...|. .
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-----------~ 100 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-----------H 100 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-----------h
Confidence 344 4566778888899988887766666777788888899988888888888888888888888874 3
Q ss_pred hhcCCcccCCCCCCeEecccc
Q 042184 102 AKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 102 ~~l~~~~~~~~~L~~L~l~~~ 122 (261)
...|..+...++++.++..++
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred hhCCccccccCCcchhhhccC
Confidence 478888888888888888776
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.34 E-value=0.00089 Score=51.25 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=71.4
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 84 (261)
+...+..+.||++.|.+..+-..++-++.+..|+++.|.+..+|..+..+..++.++++.|..+..|.+....+.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 45566778888888877766666777788899999998888888888888888888888888888888888899999988
Q ss_pred ccceecc
Q 042184 85 VYQYYFT 91 (261)
Q Consensus 85 l~~~~~~ 91 (261)
.-.+.++
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8887654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.024 Score=42.62 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=43.7
Q ss_pred CCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHh-CCCCCceEEEeecccccccccccccCCccccce
Q 042184 113 NLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA-NLENLENLIVLMKSKEEVLDLQSLSNPPQYLQR 189 (261)
Q Consensus 113 ~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 189 (261)
.++.++-+++ .......+..++.++.|.+.++....+.-..-++ -.++|+.|++++|+..+...+..+..++ +|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk-nLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK-NLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh-hhHH
Confidence 3555555554 4445555666666666666554333332233333 2456777777766555444444455555 6666
Q ss_pred EEEec
Q 042184 190 LYFKG 194 (261)
Q Consensus 190 L~l~~ 194 (261)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 65554
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=0.037 Score=41.62 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=42.0
Q ss_pred CCCcEEeCCCCccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc---chHHHHHH
Q 042184 55 LGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DSEVLKEL 130 (261)
Q Consensus 55 ~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~~~~~~l 130 (261)
..++.++-+++.+. .-...+..++.++.|.+.+|.--+ ...+...-+-.++|+.|++++| ++.....+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d--------D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD--------DWCLERLGGLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchh--------hHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence 34555666555554 223345555566666665554211 1111111113456667777666 55566666
Q ss_pred hccccccEEEeec
Q 042184 131 MKLRQLRKLSIRP 143 (261)
Q Consensus 131 ~~~~~L~~L~l~~ 143 (261)
.++++|+.|.+.+
T Consensus 173 ~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 173 LKLKNLRRLHLYD 185 (221)
T ss_pred HHhhhhHHHHhcC
Confidence 6666666666654
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.82 E-value=0.021 Score=27.06 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=12.0
Q ss_pred CCcccEEEeccCCCCCChhHHh
Q 042184 206 PKNVIRLGLDLSGLTEDPIRVL 227 (261)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~~~ 227 (261)
+++|++|++++|.+++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567777777777665544443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.42 E-value=0.15 Score=24.46 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=11.1
Q ss_pred CCCcEEeCCCCcccccchH
Q 042184 55 LGLESLDLKNTLVRELPVE 73 (261)
Q Consensus 55 ~~L~~L~l~~~~~~~~~~~ 73 (261)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666655543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.42 E-value=0.15 Score=24.46 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=11.1
Q ss_pred CCCcEEeCCCCcccccchH
Q 042184 55 LGLESLDLKNTLVRELPVE 73 (261)
Q Consensus 55 ~~L~~L~l~~~~~~~~~~~ 73 (261)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666655543
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.29 E-value=0.27 Score=23.63 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=15.2
Q ss_pred CCcccEEEeccC-CCCCChhHHh
Q 042184 206 PKNVIRLGLDLS-GLTEDPIRVL 227 (261)
Q Consensus 206 ~~~L~~L~l~~~-~~~~~~~~~~ 227 (261)
|++|++|++++| .+++.....+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 578888888888 4676544443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.06 E-value=0.63 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=14.9
Q ss_pred CcccEEEeccCCCCCChhHHh
Q 042184 207 KNVIRLGLDLSGLTEDPIRVL 227 (261)
Q Consensus 207 ~~L~~L~l~~~~~~~~~~~~~ 227 (261)
++|++|++++|.+.+.....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 468888888888876544433
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.49 E-value=1.2 Score=21.48 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=7.9
Q ss_pred ccceeecCCCCCCCCc
Q 042184 10 LMKVLDLEDAPVVYLP 25 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~ 25 (261)
.|++|+.++|+++.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3455555555555444
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.05 E-value=1.6 Score=21.14 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=7.1
Q ss_pred ccccEEEecCCCce
Q 042184 32 LNLHYLSLRNKKVK 45 (261)
Q Consensus 32 ~~L~~L~l~~~~i~ 45 (261)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555544
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.94 E-value=4.4 Score=35.58 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=35.4
Q ss_pred CCCCCcEEeCCCCcccc---cchHhhccccccceeccce--ecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 53 NLLGLESLDLKNTLVRE---LPVEIRNLKKLRYLMVYQY--YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 53 ~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
+.+.+..+++++|++.. +.......|+|+.|+|++| .+. ...++.+ ++. ..|++|.+.+|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--------~~~el~K-~k~-l~Leel~l~GN 280 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--------SESELDK-LKG-LPLEELVLEGN 280 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--------chhhhhh-hcC-CCHHHeeecCC
Confidence 55777778888887652 3333345788888888887 221 1111211 222 34788888877
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.73 E-value=3.9 Score=35.89 Aligned_cols=83 Identities=20% Similarity=0.116 Sum_probs=54.3
Q ss_pred hCCCCCceEEEeeccccccccccccc-CCccccceEEEecc-C-cCCCcccc--CCCcccEEEeccCCCCCChh------
Q 042184 156 ANLENLENLIVLMKSKEEVLDLQSLS-NPPQYLQRLYFKGD-M-KKLPDWIF--KPKNVIRLGLDLSGLTEDPI------ 224 (261)
Q Consensus 156 ~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~-l-~~l~~~~~--~~~~L~~L~l~~~~~~~~~~------ 224 (261)
.+.+.+..+.+++|.+.....+..+. ..| +|+.|+|+++ . ..-..++. +...|++|-+.+|.+.....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~ap-klk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAP-KLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcc-hhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 46778889999999776544443333 356 9999999983 2 22222233 24568999999998876432
Q ss_pred HH-hccCCcccceEec
Q 042184 225 RV-LHALPNLLQLRLA 239 (261)
Q Consensus 225 ~~-~~~~~~L~~L~l~ 239 (261)
.. ...+|+|..||=.
T Consensus 294 ~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHhcchheeecCc
Confidence 12 2368888888765
No 89
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=29.91 E-value=99 Score=16.72 Aligned_cols=7 Identities=43% Similarity=0.719 Sum_probs=3.4
Q ss_pred CCceEEE
Q 042184 160 NLENLIV 166 (261)
Q Consensus 160 ~L~~L~l 166 (261)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 4444444
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=26.60 E-value=52 Score=15.67 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=5.7
Q ss_pred ccEEEeccCCCC
Q 042184 209 VIRLGLDLSGLT 220 (261)
Q Consensus 209 L~~L~l~~~~~~ 220 (261)
|++|.+....+.
T Consensus 2 LKtL~L~~v~f~ 13 (26)
T PF07723_consen 2 LKTLHLDSVVFS 13 (26)
T ss_pred CeEEEeeEEEEC
Confidence 445555544443
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.42 E-value=1.3e+02 Score=26.52 Aligned_cols=80 Identities=11% Similarity=-0.039 Sum_probs=37.3
Q ss_pred CCCceEEEeecccccccc-cccccCCccccceEEEec-cCc--CCCc------c-c-cCCCcccEEEeccCCCCCChh--
Q 042184 159 ENLENLIVLMKSKEEVLD-LQSLSNPPQYLQRLYFKG-DMK--KLPD------W-I-FKPKNVIRLGLDLSGLTEDPI-- 224 (261)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~-~~~~~~~~~~L~~L~l~~-~l~--~l~~------~-~-~~~~~L~~L~l~~~~~~~~~~-- 224 (261)
..++++.+..|...+... +..+..-+ +.+.+.+.. ... ..+. . . ...--+..+.++.|......-
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~-s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~ 432 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSK-SGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESA 432 (553)
T ss_pred eeeeEeeccccccccccccccceeecc-ccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHH
Confidence 357777777775543322 12233334 666666655 221 0000 0 0 112335556666665544322
Q ss_pred -HHhccCCcccceEec
Q 042184 225 -RVLHALPNLLQLRLA 239 (261)
Q Consensus 225 -~~~~~~~~L~~L~l~ 239 (261)
..+..-+.+..|+++
T Consensus 433 in~l~stqtl~kldis 448 (553)
T KOG4242|consen 433 INKLLSTQTLAKLDIS 448 (553)
T ss_pred HHhhccCccccccccc
Confidence 223344566666666
Done!