Query 042184
Match_columns 261
No_of_seqs 164 out of 2355
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:48:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 100.0 8.5E-29 2.9E-33 202.5 13.6 222 8-243 80-314 (328)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-28 7.6E-33 221.0 13.3 232 2-246 411-720 (768)
3 1ogq_A PGIP-2, polygalacturona 100.0 5.7E-29 1.9E-33 202.3 7.3 223 9-245 50-283 (313)
4 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-28 1.4E-32 197.2 9.0 225 1-241 68-302 (313)
5 3rgz_A Protein brassinosteroid 99.9 4.2E-27 1.4E-31 212.7 14.7 227 8-246 393-696 (768)
6 2z66_A Variable lymphocyte rec 99.9 1.1E-26 3.7E-31 188.3 8.9 225 9-244 28-262 (306)
7 3v47_A TOLL-like receptor 5B a 99.9 1.2E-25 4.3E-30 191.6 14.7 90 153-244 317-409 (455)
8 1wwl_A Monocyte differentiatio 99.9 4.3E-26 1.5E-30 185.3 10.6 219 11-245 65-311 (312)
9 1xku_A Decorin; proteoglycan, 99.9 1.8E-25 6.3E-30 183.0 14.1 225 4-243 71-306 (330)
10 4fcg_A Uncharacterized protein 99.9 3E-26 1E-30 187.4 9.4 207 1-221 96-315 (328)
11 2id5_A Lingo-1, leucine rich r 99.9 3.4E-25 1.2E-29 190.1 16.4 230 2-243 49-309 (477)
12 4eco_A Uncharacterized protein 99.9 5.8E-26 2E-30 201.1 10.9 226 1-243 198-470 (636)
13 2z80_A TOLL-like receptor 2, v 99.9 6.2E-26 2.1E-30 187.4 10.3 223 9-245 52-316 (353)
14 3v47_A TOLL-like receptor 5B a 99.9 4.2E-25 1.4E-29 188.3 14.1 107 135-244 276-385 (455)
15 2id5_A Lingo-1, leucine rich r 99.9 2.7E-24 9.2E-29 184.5 18.0 222 9-243 32-261 (477)
16 3t6q_A CD180 antigen; protein- 99.9 3E-25 1E-29 195.7 11.9 237 4-243 273-536 (606)
17 3zyj_A Leucine-rich repeat-con 99.9 1.1E-24 3.7E-29 185.2 14.0 220 9-243 64-292 (440)
18 3zyi_A Leucine-rich repeat-con 99.9 8.4E-25 2.9E-29 186.4 13.4 219 9-243 75-303 (452)
19 1xku_A Decorin; proteoglycan, 99.9 6E-25 2.1E-29 179.9 11.8 217 9-244 52-277 (330)
20 2ft3_A Biglycan; proteoglycan, 99.9 4.8E-25 1.6E-29 180.6 11.1 221 9-243 54-307 (332)
21 3o6n_A APL1; leucine-rich repe 99.9 1.7E-24 5.8E-29 181.2 13.8 221 5-243 65-331 (390)
22 3t6q_A CD180 antigen; protein- 99.9 2.1E-24 7.1E-29 190.3 14.7 232 1-244 293-561 (606)
23 4eco_A Uncharacterized protein 99.9 8.5E-25 2.9E-29 193.7 11.6 223 4-242 325-578 (636)
24 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-24 1.7E-28 170.9 15.0 217 12-243 14-238 (285)
25 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.4E-28 173.1 17.1 229 5-245 84-326 (347)
26 4fmz_A Internalin; leucine ric 99.9 1.8E-23 6.1E-28 172.2 17.6 216 5-244 62-301 (347)
27 3oja_B Anopheles plasmodium-re 99.9 2.7E-24 9.3E-29 189.2 13.5 220 5-242 71-336 (597)
28 4ecn_A Leucine-rich repeat pro 99.9 1.3E-24 4.5E-29 196.8 11.7 227 1-243 440-710 (876)
29 3o6n_A APL1; leucine-rich repe 99.9 6.5E-24 2.2E-28 177.6 14.3 234 3-246 87-355 (390)
30 4ecn_A Leucine-rich repeat pro 99.9 5.1E-24 1.7E-28 193.0 14.5 227 10-242 549-818 (876)
31 2z7x_B TOLL-like receptor 1, v 99.9 7.2E-24 2.5E-28 183.7 14.7 87 3-91 39-128 (520)
32 3vq2_A TLR4, TOLL-like recepto 99.9 8E-24 2.7E-28 186.6 13.8 222 5-243 303-534 (606)
33 2z66_A Variable lymphocyte rec 99.9 7.9E-24 2.7E-28 171.4 12.5 219 12-245 10-238 (306)
34 2ft3_A Biglycan; proteoglycan, 99.9 3.4E-24 1.2E-28 175.6 10.3 218 10-245 34-279 (332)
35 2z7x_B TOLL-like receptor 1, v 99.9 3.2E-23 1.1E-27 179.6 17.0 127 1-143 15-147 (520)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.2E-23 1.4E-27 180.5 17.8 239 3-244 70-511 (562)
37 3oja_B Anopheles plasmodium-re 99.9 1.1E-23 3.9E-28 185.3 14.1 231 2-245 92-360 (597)
38 2z63_A TOLL-like receptor 4, v 99.9 6.9E-24 2.3E-28 185.6 11.1 229 2-245 275-533 (570)
39 3oja_A Leucine-rich immune mol 99.9 9.8E-24 3.4E-28 181.2 11.6 213 7-243 32-250 (487)
40 3o53_A Protein LRIM1, AGAP0063 99.9 7.4E-24 2.5E-28 172.5 9.9 215 5-243 30-250 (317)
41 1o6v_A Internalin A; bacterial 99.9 2E-22 6.7E-27 172.4 18.2 226 4-244 63-323 (466)
42 3vq2_A TLR4, TOLL-like recepto 99.9 9.5E-24 3.2E-28 186.1 9.5 222 7-244 326-559 (606)
43 2z62_A TOLL-like receptor 4, v 99.9 4.7E-23 1.6E-27 164.5 12.2 124 10-143 29-158 (276)
44 3bz5_A Internalin-J, INLJ; leu 99.9 7.7E-23 2.6E-27 174.3 14.0 208 3-243 36-246 (457)
45 1ozn_A Reticulon 4 receptor; N 99.9 9.4E-23 3.2E-27 163.5 13.5 202 8-222 31-240 (285)
46 2z80_A TOLL-like receptor 2, v 99.9 4.3E-23 1.5E-27 170.4 11.1 209 3-224 70-318 (353)
47 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-22 5.7E-27 184.4 15.8 239 2-243 66-375 (844)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-22 5.9E-27 176.6 15.0 121 9-143 52-178 (562)
49 2z81_A CD282 antigen, TOLL-lik 99.9 7.6E-23 2.6E-27 178.3 12.6 154 9-173 26-210 (549)
50 1o6v_A Internalin A; bacterial 99.9 2.8E-22 9.6E-27 171.5 15.9 216 4-245 172-390 (466)
51 2ca6_A RAN GTPase-activating p 99.9 4.5E-24 1.5E-28 178.4 4.1 237 2-246 25-319 (386)
52 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-22 1.1E-26 170.3 15.5 188 4-223 59-249 (457)
53 2z81_A CD282 antigen, TOLL-lik 99.9 8.2E-23 2.8E-27 178.1 12.0 142 2-143 43-205 (549)
54 3zyj_A Leucine-rich repeat-con 99.9 2.1E-22 7.1E-27 171.1 14.1 217 11-244 45-269 (440)
55 1ziw_A TOLL-like receptor 3; i 99.9 3.6E-22 1.2E-26 178.3 16.2 237 4-243 324-622 (680)
56 3j0a_A TOLL-like receptor 5; m 99.9 6.6E-23 2.3E-27 187.0 11.4 230 2-243 41-351 (844)
57 3zyi_A Leucine-rich repeat-con 99.9 2.3E-22 7.9E-27 171.4 13.8 218 11-244 56-280 (452)
58 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.7E-27 162.0 12.4 202 3-221 4-209 (290)
59 1wwl_A Monocyte differentiatio 99.9 6.2E-23 2.1E-27 166.6 8.8 200 7-221 93-310 (312)
60 1ziw_A TOLL-like receptor 3; i 99.9 8E-22 2.7E-26 176.1 15.6 205 4-222 400-624 (680)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-23 5.1E-28 170.7 3.6 214 3-239 52-270 (317)
62 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.7E-27 166.1 9.1 224 9-246 70-309 (336)
63 1h6u_A Internalin H; cell adhe 99.9 4.4E-22 1.5E-26 161.3 11.7 193 5-221 37-231 (308)
64 3oja_A Leucine-rich immune mol 99.9 7.4E-23 2.5E-27 175.7 6.4 215 2-239 51-270 (487)
65 2z62_A TOLL-like receptor 4, v 99.9 1.9E-21 6.6E-26 155.1 13.4 219 13-245 11-239 (276)
66 2z63_A TOLL-like receptor 4, v 99.9 1.9E-21 6.7E-26 170.1 14.5 110 4-122 47-159 (570)
67 1h6u_A Internalin H; cell adhe 99.9 1.9E-21 6.6E-26 157.5 12.6 210 13-248 23-235 (308)
68 2o6q_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 152.4 14.5 197 10-221 17-219 (270)
69 2ast_B S-phase kinase-associat 99.9 5.2E-22 1.8E-26 162.7 9.0 223 10-246 48-287 (336)
70 3rfs_A Internalin B, repeat mo 99.9 4.7E-22 1.6E-26 158.4 7.2 214 10-246 20-238 (272)
71 4glp_A Monocyte differentiatio 99.9 2.3E-21 8E-26 157.2 11.2 219 10-245 65-309 (310)
72 2o6q_A Variable lymphocyte rec 99.9 5.6E-21 1.9E-25 152.0 12.9 196 32-243 16-218 (270)
73 3rfs_A Internalin B, repeat mo 99.8 1.4E-21 4.6E-26 155.7 7.8 207 5-232 37-247 (272)
74 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-20 5.5E-25 164.9 13.4 77 159-245 221-299 (622)
75 1p9a_G Platelet glycoprotein I 99.8 1.2E-20 4E-25 151.6 10.9 199 27-243 5-208 (290)
76 2ca6_A RAN GTPase-activating p 99.8 1.7E-21 5.7E-26 162.8 5.9 218 21-245 21-289 (386)
77 1z7x_W Ribonuclease inhibitor; 99.8 5.5E-22 1.9E-26 169.3 2.8 209 5-220 52-297 (461)
78 3goz_A Leucine-rich repeat-con 99.8 1.6E-21 5.4E-26 161.6 4.9 235 4-245 17-299 (362)
79 4glp_A Monocyte differentiatio 99.8 9.5E-21 3.2E-25 153.6 9.3 201 7-222 89-309 (310)
80 4g8a_A TOLL-like receptor 4; l 99.8 4.3E-20 1.5E-24 163.3 13.6 88 4-91 95-186 (635)
81 2xwt_C Thyrotropin receptor; s 99.8 2.4E-20 8.3E-25 145.6 8.8 206 14-240 16-235 (239)
82 1z7x_W Ribonuclease inhibitor; 99.8 4.8E-21 1.6E-25 163.5 3.5 233 5-245 24-299 (461)
83 2xwt_C Thyrotropin receptor; s 99.8 4.2E-20 1.4E-24 144.3 7.8 192 9-218 31-237 (239)
84 1jl5_A Outer protein YOPM; leu 99.8 1.6E-20 5.3E-25 159.9 4.6 137 78-243 131-270 (454)
85 1jl5_A Outer protein YOPM; leu 99.8 1.4E-19 4.8E-24 154.0 10.5 108 9-122 131-247 (454)
86 3goz_A Leucine-rich repeat-con 99.8 1.7E-20 5.8E-25 155.4 4.5 222 13-241 2-264 (362)
87 3ogk_B Coronatine-insensitive 99.8 1.2E-19 4.3E-24 159.3 8.4 236 5-251 266-534 (592)
88 3g06_A SSPH2 (leucine-rich rep 99.8 2.7E-19 9.3E-24 157.1 9.4 87 134-231 221-308 (622)
89 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.8E-23 138.7 12.1 165 7-194 44-209 (291)
90 3m19_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 137.4 9.9 176 32-222 14-194 (251)
91 1h6t_A Internalin B; cell adhe 99.8 3.2E-19 1.1E-23 143.3 6.9 189 11-223 26-216 (291)
92 3m19_A Variable lymphocyte rec 99.8 2.9E-18 9.9E-23 134.8 11.9 175 9-198 14-193 (251)
93 3cvr_A Invasion plasmid antige 99.8 9.4E-19 3.2E-23 152.1 9.5 186 10-231 60-254 (571)
94 1m9s_A Internalin B; cell inva 99.8 4E-19 1.4E-23 155.8 6.9 171 29-222 40-212 (605)
95 3ogk_B Coronatine-insensitive 99.7 1E-18 3.5E-23 153.6 6.6 230 6-245 189-503 (592)
96 4g8a_A TOLL-like receptor 4; l 99.7 3.3E-18 1.1E-22 151.2 9.7 228 5-243 324-580 (635)
97 1m9s_A Internalin B; cell inva 99.7 6.1E-18 2.1E-22 148.3 10.9 173 5-200 39-213 (605)
98 4ezg_A Putative uncharacterize 99.7 3.4E-18 1.2E-22 129.5 7.0 151 29-197 41-194 (197)
99 4ezg_A Putative uncharacterize 99.7 6.7E-17 2.3E-21 122.3 11.3 152 52-221 41-195 (197)
100 3cvr_A Invasion plasmid antige 99.7 6.3E-17 2.2E-21 140.6 11.7 176 33-245 60-245 (571)
101 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.7E-22 131.8 6.2 171 7-201 17-189 (263)
102 4ay9_X Follicle-stimulating ho 99.7 3.7E-17 1.3E-21 134.6 9.0 215 9-239 30-254 (350)
103 2o6s_A Variable lymphocyte rec 99.7 4.2E-17 1.4E-21 124.5 8.3 144 12-169 10-158 (208)
104 1xeu_A Internalin C; cellular 99.7 1.8E-16 6E-21 125.4 9.2 151 4-174 36-187 (263)
105 1dce_A Protein (RAB geranylger 99.7 1.5E-18 5E-23 151.3 -3.5 186 52-244 346-547 (567)
106 2o6s_A Variable lymphocyte rec 99.7 1.2E-16 4.1E-21 121.9 6.3 173 34-228 9-186 (208)
107 2p1m_B Transport inhibitor res 99.6 8.9E-18 3E-22 147.6 -0.2 202 29-243 286-519 (594)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 2.5E-16 8.4E-21 121.3 7.8 150 12-174 14-168 (220)
109 4ay9_X Follicle-stimulating ho 99.6 3.2E-16 1.1E-20 129.1 8.4 216 6-238 7-233 (350)
110 2p1m_B Transport inhibitor res 99.6 6E-17 2.1E-21 142.3 4.0 41 206-246 455-497 (594)
111 2v9t_B SLIT homolog 2 protein 99.6 6.9E-16 2.4E-20 118.8 9.2 147 12-172 14-165 (220)
112 3e6j_A Variable lymphocyte rec 99.6 9.4E-16 3.2E-20 118.8 9.9 149 11-173 21-173 (229)
113 2xot_A Amphoterin-induced prot 99.6 9.3E-16 3.2E-20 126.8 9.0 126 34-172 20-149 (361)
114 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.4E-20 110.0 8.3 126 7-142 15-148 (149)
115 2ell_A Acidic leucine-rich nuc 99.6 2E-15 7E-20 111.2 7.9 127 7-143 22-156 (168)
116 1a9n_A U2A', U2A'; complex (nu 99.6 3.6E-15 1.2E-19 110.7 9.1 128 3-143 13-149 (176)
117 1dce_A Protein (RAB geranylger 99.6 9E-17 3.1E-21 140.1 0.2 198 29-238 346-567 (567)
118 2v9t_B SLIT homolog 2 protein 99.6 4.9E-15 1.7E-19 114.0 9.1 125 9-143 32-161 (220)
119 2xot_A Amphoterin-induced prot 99.6 2.3E-15 7.9E-20 124.4 7.6 147 12-172 21-176 (361)
120 3e6j_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 115.2 8.3 152 55-222 19-174 (229)
121 2v70_A SLIT-2, SLIT homolog 2 99.6 9.1E-15 3.1E-19 112.5 8.1 152 34-222 13-168 (220)
122 4b8c_D Glucose-repressible alc 99.5 2.3E-15 8E-20 134.9 5.1 118 2-130 217-336 (727)
123 4b8c_D Glucose-repressible alc 99.5 4.6E-16 1.6E-20 139.5 -0.8 154 10-176 174-333 (727)
124 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.6E-19 105.9 6.9 110 1-122 41-157 (168)
125 2je0_A Acidic leucine-rich nuc 99.5 1.7E-14 5.8E-19 104.0 6.4 109 1-121 34-149 (149)
126 3sb4_A Hypothetical leucine ri 99.5 9.3E-14 3.2E-18 113.4 10.1 79 8-87 48-157 (329)
127 1ds9_A Outer arm dynein; leuci 99.5 9.1E-16 3.1E-20 116.2 -3.2 150 7-172 16-185 (198)
128 1ds9_A Outer arm dynein; leuci 99.5 1.7E-15 5.8E-20 114.7 -1.8 134 44-191 37-180 (198)
129 1w8a_A SLIT protein; signaling 99.5 7.7E-14 2.6E-18 105.0 7.2 120 12-143 11-135 (192)
130 1w8a_A SLIT protein; signaling 99.5 2.3E-13 8E-18 102.3 8.9 103 10-122 30-136 (192)
131 2wfh_A SLIT homolog 2 protein 99.4 5.9E-13 2E-17 100.2 10.0 120 12-143 13-135 (193)
132 2wfh_A SLIT homolog 2 protein 99.4 2.7E-13 9.1E-18 102.1 8.1 125 35-172 13-139 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.4 8E-14 2.7E-18 103.4 4.3 131 27-172 14-153 (176)
134 3sb4_A Hypothetical leucine ri 99.3 1.2E-12 4E-17 106.8 5.9 219 8-242 24-309 (329)
135 3un9_A NLR family member X1; l 99.3 3.6E-13 1.2E-17 111.5 2.5 158 9-172 72-252 (372)
136 2o6r_A Variable lymphocyte rec 99.3 7.4E-12 2.5E-16 92.8 9.1 121 11-143 9-133 (177)
137 4fdw_A Leucine rich hypothetic 99.3 2E-11 6.8E-16 102.0 12.2 218 4-242 131-357 (401)
138 2o6r_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 91.2 10.0 104 8-122 27-134 (177)
139 3g39_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 90.8 9.1 100 10-122 10-112 (170)
140 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 90.9 8.4 99 11-122 14-115 (174)
141 4fdw_A Leucine rich hypothetic 99.3 5.7E-11 1.9E-15 99.3 12.6 220 3-242 152-382 (401)
142 2r9u_A Variable lymphocyte rec 99.2 2.6E-11 9E-16 89.6 7.9 83 9-91 33-118 (174)
143 3g39_A Variable lymphocyte rec 99.2 5.4E-11 1.9E-15 87.5 7.9 83 9-91 30-115 (170)
144 3un9_A NLR family member X1; l 99.2 1.6E-11 5.3E-16 101.7 4.8 143 8-157 100-261 (372)
145 2ifg_A High affinity nerve gro 99.0 5.1E-10 1.7E-14 91.8 7.8 99 12-122 11-113 (347)
146 2ifg_A High affinity nerve gro 99.0 1.2E-09 4E-14 89.6 9.4 90 1-91 24-116 (347)
147 2ra8_A Uncharacterized protein 99.0 5.9E-10 2E-14 91.7 6.9 175 51-241 135-341 (362)
148 1io0_A Tropomodulin; LRR prote 98.9 1.3E-10 4.5E-15 86.6 0.3 112 26-143 30-160 (185)
149 2ra8_A Uncharacterized protein 98.9 6.2E-09 2.1E-13 85.6 8.6 160 5-172 135-320 (362)
150 1io0_A Tropomodulin; LRR prote 98.8 5.6E-09 1.9E-13 77.7 5.2 119 47-172 28-164 (185)
151 4gt6_A Cell surface protein; l 98.6 3.8E-07 1.3E-11 75.9 12.0 60 3-64 108-169 (394)
152 4fs7_A Uncharacterized protein 98.6 1.7E-07 5.7E-12 78.2 9.3 125 107-239 248-374 (394)
153 4gt6_A Cell surface protein; l 98.6 5.7E-07 1.9E-11 74.9 12.3 81 155-239 284-365 (394)
154 3e4g_A ATP synthase subunit S, 98.4 7.8E-07 2.7E-11 64.9 7.6 86 78-173 61-153 (176)
155 4fs7_A Uncharacterized protein 98.4 2.4E-06 8.1E-11 71.2 10.5 213 3-236 179-393 (394)
156 3rw6_A Nuclear RNA export fact 98.3 5.2E-07 1.8E-11 70.7 4.8 112 5-120 137-259 (267)
157 3e4g_A ATP synthase subunit S, 98.3 9.9E-07 3.4E-11 64.4 4.9 83 136-221 63-154 (176)
158 3rw6_A Nuclear RNA export fact 98.2 1.8E-07 6.1E-12 73.3 0.1 104 28-141 137-258 (267)
159 4h09_A Hypothetical leucine ri 98.1 4.1E-05 1.4E-09 63.2 12.1 124 110-239 215-341 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.8 5.6E-06 1.9E-10 61.5 1.9 110 28-143 37-166 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 3.9E-05 1.4E-09 57.0 5.5 117 49-171 35-169 (197)
162 4h09_A Hypothetical leucine ri 97.7 0.00027 9.2E-09 58.3 9.7 121 106-231 234-356 (379)
163 3rfe_A Platelet glycoprotein I 97.0 0.0012 4.2E-08 45.6 5.3 55 12-68 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0061 2.1E-07 42.0 4.8 40 182-221 28-69 (130)
165 2lz0_A Uncharacterized protein 54.7 13 0.00044 23.8 3.4 39 26-65 14-53 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=8.5e-29 Score=202.50 Aligned_cols=222 Identities=22% Similarity=0.229 Sum_probs=196.7
Q ss_pred ccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccc
Q 042184 8 FKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQ 87 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 87 (261)
.+++++|++++|.+..+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 47899999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCchhhhhhhhhcCCccc---------CCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhC
Q 042184 88 YYFTSGSSIAEEAAAKLHPGFG---------SLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIAN 157 (261)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~---------~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 157 (261)
|++.+ .+|..+. .+++|+.|++++| ...++..+..+++|+.|++++ +....++..+..
T Consensus 160 n~~~~----------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~--N~l~~l~~~l~~ 227 (328)
T 4fcg_A 160 CPELT----------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN--SPLSALGPAIHH 227 (328)
T ss_dssp ETTCC----------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES--SCCCCCCGGGGG
T ss_pred CCCcc----------ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC--CCCCcCchhhcc
Confidence 87654 5565554 4999999999999 446777799999999999998 333356677999
Q ss_pred CCCCceEEEeecccccccccccccCCccccceEEEec-cC-cCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184 158 LENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DM-KKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ 235 (261)
Q Consensus 158 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 235 (261)
+++|++|++++|.+.+..+ ..+..++ +|++|++++ .+ ..+|..+..+++|++|++++|.+.+.++..+.++++|+.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p-~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYP-PIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp CTTCCEEECTTCTTCCBCC-CCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CCCCCEEECcCCcchhhhH-HHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 9999999999998887776 4588899 999999998 55 488888999999999999999999999999999999999
Q ss_pred eEec-cccc
Q 042184 236 LRLA-GTYN 243 (261)
Q Consensus 236 L~l~-n~~~ 243 (261)
+++. +.+.
T Consensus 306 l~l~~~~~~ 314 (328)
T 4fcg_A 306 ILVPPHLQA 314 (328)
T ss_dssp EECCGGGSC
T ss_pred EeCCHHHHH
Confidence 9998 6553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.2e-28 Score=220.96 Aligned_cols=232 Identities=20% Similarity=0.232 Sum_probs=172.1
Q ss_pred CccccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccc
Q 042184 2 NTSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLK 78 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~ 78 (261)
|..+.++++|++|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 556677777777777777766 66667777777777777777776 66777777777777777777776 6667777777
Q ss_pred cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchH----
Q 042184 79 KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLC---- 152 (261)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---- 152 (261)
+|++|++++|++++ ..|..++.+++|+.|++++| .+..|..++.+++|+.|+++++ ...+.+|
T Consensus 491 ~L~~L~L~~N~l~~----------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~g~ip~~~~ 559 (768)
T 3rgz_A 491 NLNWISLSNNRLTG----------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMF 559 (768)
T ss_dssp TCCEEECCSSCCCS----------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS-EEESBCCGGGG
T ss_pred CCCEEEccCCccCC----------cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC-ccCCcCChHHh
Confidence 77777777776654 56677777778888888777 4456677777788888877651 1111111
Q ss_pred ------------------------------------------------------------------HHHhCCCCCceEEE
Q 042184 153 ------------------------------------------------------------------VLIANLENLENLIV 166 (261)
Q Consensus 153 ------------------------------------------------------------------~~l~~~~~L~~L~l 166 (261)
..++.+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 12334567888888
Q ss_pred eecccccccccccccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 167 LMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 167 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
++|.+.+..| ..+..++ +|+.|++++ .++ .+|..++.+++|+.|++++|.+++.+|..++++++|++|+++ |.++
T Consensus 640 s~N~l~g~ip-~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 640 SYNMLSGYIP-KEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CSSCCBSCCC-GGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred cCCcccccCC-HHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 8888877777 4577788 888888888 777 788888888889999999998888888888888899999999 8887
Q ss_pred cee
Q 042184 244 YEL 246 (261)
Q Consensus 244 ~~~ 246 (261)
+..
T Consensus 718 g~i 720 (768)
T 3rgz_A 718 GPI 720 (768)
T ss_dssp EEC
T ss_pred ccC
Confidence 654
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=5.7e-29 Score=202.34 Aligned_cols=223 Identities=19% Similarity=0.161 Sum_probs=127.9
Q ss_pred cccceeecCCCCCC---CCcccccCcccccEEEecC-CCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhccccccc
Q 042184 9 KLMKVLDLEDAPVV---YLPEGVGSLLNLHYLSLRN-KKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRY 82 (261)
Q Consensus 9 ~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~-~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~ 82 (261)
.++++|+++++.+. .+|..+..+++|++|++++ |.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 35666666666655 3555666666666666663 5555 55555666666666666666665 55555666666666
Q ss_pred eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccc-cccEEEeeccCCCccchHHHHhCCC
Q 042184 83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLR-QLRKLSIRPQNGNGKDLCVLIANLE 159 (261)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~ 159 (261)
|++++|.+++ ..|..+..+++|+.|++++| .+..+..+..++ +|+.|++++ +...+..|..+..++
T Consensus 130 L~Ls~N~l~~----------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 130 LDFSYNALSG----------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLN 198 (313)
T ss_dssp EECCSSEEES----------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCC
T ss_pred EeCCCCccCC----------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccCChHHhCCc
Confidence 6666665543 34555566666666666666 334455555555 666666655 223334445555554
Q ss_pred CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEe
Q 042184 160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL 238 (261)
Q Consensus 160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 238 (261)
|++|++++|.+.+..+ ..+..++ +|+.|++++ .++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 199 -L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDAS-VLFGSDK-NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp -CSEEECCSSEEEECCG-GGCCTTS-CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred -ccEEECcCCcccCcCC-HHHhcCC-CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 6666666665554433 3355555 666666666 55533333555566666666666666555555666666666666
Q ss_pred c-ccccce
Q 042184 239 A-GTYNYE 245 (261)
Q Consensus 239 ~-n~~~~~ 245 (261)
+ |.+++.
T Consensus 276 s~N~l~~~ 283 (313)
T 1ogq_A 276 SFNNLCGE 283 (313)
T ss_dssp CSSEEEEE
T ss_pred cCCccccc
Confidence 6 655543
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.2e-28 Score=197.22 Aligned_cols=225 Identities=19% Similarity=0.263 Sum_probs=198.4
Q ss_pred CCccccCccccceeecCC-CCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhc
Q 042184 1 MNTSIANFKLMKVLDLED-APVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRN 76 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~ 76 (261)
+|..|.++++|++|++++ |.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 477899999999999995 8888 88999999999999999999998 89999999999999999999999 78899999
Q ss_pred cccccceeccceecccCchhhhhhhhhcCCcccCCC-CCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHH
Q 042184 77 LKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLT-NLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCV 153 (261)
Q Consensus 77 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 153 (261)
+++|++|++++|.+++ .+|..+..++ +|+.|++++| .+..+..+..++ |+.|++++ +......+.
T Consensus 148 l~~L~~L~L~~N~l~~----------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~-N~l~~~~~~ 215 (313)
T 1ogq_A 148 LPNLVGITFDGNRISG----------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR-NMLEGDASV 215 (313)
T ss_dssp CTTCCEEECCSSCCEE----------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS-SEEEECCGG
T ss_pred CCCCCeEECcCCcccC----------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC-CcccCcCCH
Confidence 9999999999998764 6788888888 9999999999 556677778887 99999988 444456777
Q ss_pred HHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184 154 LIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP 231 (261)
Q Consensus 154 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 231 (261)
.+..+++|++|++++|.+.+..+ .+..++ +|++|++++ .++ .+|..+..+++|+.|++++|.+++.++.. .+++
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~ 291 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFDLG--KVGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCBGG--GCCCCT-TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred HHhcCCCCCEEECCCCceeeecC--cccccC-CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc
Confidence 88999999999999998876555 266778 999999999 888 88999999999999999999999876655 7899
Q ss_pred cccceEec-cc
Q 042184 232 NLLQLRLA-GT 241 (261)
Q Consensus 232 ~L~~L~l~-n~ 241 (261)
+|+.++++ |+
T Consensus 292 ~L~~l~l~~N~ 302 (313)
T 1ogq_A 292 RFDVSAYANNK 302 (313)
T ss_dssp GSCGGGTCSSS
T ss_pred ccChHHhcCCC
Confidence 99999999 75
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4.2e-27 Score=212.66 Aligned_cols=227 Identities=19% Similarity=0.205 Sum_probs=189.0
Q ss_pred ccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchHhhcccccccee
Q 042184 8 FKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLM 84 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~ 84 (261)
+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 566777777777777 67777788888888888888877 77777888888888888888877 6777888888888888
Q ss_pred ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE 162 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 162 (261)
+++|++++ ..|..+..+++|+.|++++| .+..|..++.+++|+.|++++ +...+.+|..+..+++|+
T Consensus 473 L~~N~l~~----------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 473 LDFNDLTG----------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN-NSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp CCSSCCCS----------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGGCTTCC
T ss_pred ecCCcccC----------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC-CcccCcCCHHHcCCCCCC
Confidence 88887764 57788899999999999999 557788889999999999988 556667888999999999
Q ss_pred eEEEeecccccccccc----------------------------------------------------------------
Q 042184 163 NLIVLMKSKEEVLDLQ---------------------------------------------------------------- 178 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~---------------------------------------------------------------- 178 (261)
+|++++|.+.+..|..
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 9999999776544311
Q ss_pred -----cccCCccccceEEEec-cCc-CCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccccee
Q 042184 179 -----SLSNPPQYLQRLYFKG-DMK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYEL 246 (261)
Q Consensus 179 -----~~~~~~~~L~~L~l~~-~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~~ 246 (261)
.+..++ +|+.|++++ .++ .+|..++.++.|+.|++++|.+++.++..++++++|+.|+++ |.+++..
T Consensus 622 g~~~~~~~~l~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 622 GHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp EECCCSCSSSB-CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred ccCchhhhccc-cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 123356 799999999 887 899999999999999999999999999999999999999999 9987654
No 6
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-26 Score=188.33 Aligned_cols=225 Identities=21% Similarity=0.156 Sum_probs=185.3
Q ss_pred cccceeecCCCCCCCCccc-ccCcccccEEEecCCCceec---ccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184 9 KLMKVLDLEDAPVVYLPEG-VGSLLNLHYLSLRNKKVKII---PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~~~i~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 84 (261)
+++++|++++|.++.+|.. +..+++|++|++++|.++.+ +..+..+++|++|++++|.+..++..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 5899999999999987754 68999999999999998743 5666789999999999999998888888999999999
Q ss_pred ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE 162 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 162 (261)
+++|.+++. .....+..+++|+.|++++| ....+..+..+++|+.|+++++.......+..+..+++|+
T Consensus 108 l~~n~l~~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 108 FQHSNLKQM---------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp CTTSEEESS---------TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCccccc---------ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 999977531 11247888999999999998 4445566788999999999872222224677788999999
Q ss_pred eEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCC-cccceEec
Q 042184 163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALP-NLLQLRLA 239 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~ 239 (261)
+|++++|.+.+..+ ..+..++ +|++|++++ .++.++. .+..+++|+.|++++|.+++..+..+..++ +|+.|+++
T Consensus 179 ~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 179 FLDLSQCQLEQLSP-TAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp EEECTTSCCCEECT-TTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred EEECCCCCcCCcCH-HHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 99999998876544 4577888 999999999 8887665 567799999999999999988877888885 99999999
Q ss_pred -ccccc
Q 042184 240 -GTYNY 244 (261)
Q Consensus 240 -n~~~~ 244 (261)
|.++.
T Consensus 257 ~N~~~~ 262 (306)
T 2z66_A 257 QNDFAC 262 (306)
T ss_dssp TCCEEC
T ss_pred CCCeec
Confidence 98864
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.2e-25 Score=191.59 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=47.0
Q ss_pred HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccC
Q 042184 153 VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHAL 230 (261)
Q Consensus 153 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (261)
..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+ |..+..+++|++|++++|.+++..+..+..+
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDS-RMFENLD-KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECG-GGGTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hHhcCcccCCEEECCCCccCCcCh-hHhcCcc-cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 344444555555555554433222 2344455 555555555 55533 4445555666666666666555444445556
Q ss_pred CcccceEec-ccccc
Q 042184 231 PNLLQLRLA-GTYNY 244 (261)
Q Consensus 231 ~~L~~L~l~-n~~~~ 244 (261)
++|+.|+++ |+++.
T Consensus 395 ~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 395 TSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred CcccEEEccCCCccc
Confidence 666666666 55543
No 8
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.3e-26 Score=185.29 Aligned_cols=219 Identities=21% Similarity=0.253 Sum_probs=178.4
Q ss_pred cceeecCCCCCC--CCccccc-------CcccccEEEecCCCce-eccccc--CCCCCCcEEeCCCCcccccchHhhcc-
Q 042184 11 MKVLDLEDAPVV--YLPEGVG-------SLLNLHYLSLRNKKVK-IIPKSI--GNLLGLESLDLKNTLVRELPVEIRNL- 77 (261)
Q Consensus 11 L~~L~l~~~~l~--~~~~~~~-------~l~~L~~L~l~~~~i~-~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~l- 77 (261)
|++|++++|.+. .++..+. .+++|++|++++|.++ .+|..+ ..+++|++|++++|.+...|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 777788888775 4665554 6899999999999998 788776 89999999999999999768777776
Q ss_pred ----ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chH--HHHHH--hccccccEEEeeccCCC
Q 042184 78 ----KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSE--VLKEL--MKLRQLRKLSIRPQNGN 147 (261)
Q Consensus 78 ----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~--~~~~l--~~~~~L~~L~l~~~~~~ 147 (261)
++|++|++++|++++ ..+..++.+++|+.|++++| .+. .+..+ ..+++|+.|+++++ ..
T Consensus 145 ~~~~~~L~~L~L~~N~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l 213 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLN----------FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GM 213 (312)
T ss_dssp TTCCTTCCEEEEESCSCCC----------CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CC
T ss_pred HhhcCCCcEEEeeCCCCcc----------chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cC
Confidence 899999999997753 33478899999999999999 332 45555 88999999999983 22
Q ss_pred c--cchH-HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCCh
Q 042184 148 G--KDLC-VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDP 223 (261)
Q Consensus 148 ~--~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~ 223 (261)
. ...+ ..+..+++|++|++++|.+.+..+...+..++ +|++|++++ .++.+|..+. ++|++|++++|.+++.
T Consensus 214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~- 289 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN- 289 (312)
T ss_dssp CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-TCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-
T ss_pred cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-CCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-
Confidence 2 1333 34467899999999999988766544566677 999999999 9999998776 8999999999999976
Q ss_pred hHHhccCCcccceEec-ccccce
Q 042184 224 IRVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 224 ~~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
+. +..+++|++|+++ |.+++.
T Consensus 290 p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 290 PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hh-HhhCCCCCEEeccCCCCCCC
Confidence 33 8899999999999 988754
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=1.8e-25 Score=182.97 Aligned_cols=225 Identities=17% Similarity=0.213 Sum_probs=149.2
Q ss_pred cccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc-hHhhcccccc
Q 042184 4 SIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLR 81 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~ 81 (261)
.|.++++|++|++++|.+..+ |..++.+++|++|++++|.++.+|..+. ++|++|++++|.+..++ ..+..+++|+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 455666666666666666533 4555666666666666666665554432 56666666666665443 3456677777
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCC
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN 160 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 160 (261)
+|++++|.++ .....+..+..+++|+.|++++| ...++..+ .++|+.|++++ +......+..+..+++
T Consensus 149 ~L~l~~n~l~--------~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~-n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 149 VVELGTNPLK--------SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG-NKITKVDAASLKGLNN 217 (330)
T ss_dssp EEECCSSCCC--------GGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTT-SCCCEECTGGGTTCTT
T ss_pred EEECCCCcCC--------ccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCC-CcCCccCHHHhcCCCC
Confidence 7777777654 12234556677777777777777 22222222 26777888776 3334444667888888
Q ss_pred CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhc------cCCcc
Q 042184 161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLH------ALPNL 233 (261)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L 233 (261)
|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+|..+..+++|++|++++|.+++.....+. ..+.+
T Consensus 218 L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 218 LAKLGLSFNSISAVDN-GSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp CCEEECCSSCCCEECT-TTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred CCEEECCCCcCceeCh-hhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 9999999888765544 4577788 899999988 8888888888889999999999988875554443 24678
Q ss_pred cceEec-cccc
Q 042184 234 LQLRLA-GTYN 243 (261)
Q Consensus 234 ~~L~l~-n~~~ 243 (261)
+.++++ |++.
T Consensus 296 ~~l~l~~N~~~ 306 (330)
T 1xku_A 296 SGVSLFSNPVQ 306 (330)
T ss_dssp SEEECCSSSSC
T ss_pred cceEeecCccc
Confidence 888888 8774
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3e-26 Score=187.41 Aligned_cols=207 Identities=19% Similarity=0.229 Sum_probs=180.8
Q ss_pred CCccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCccc-ccchHhh----
Q 042184 1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVR-ELPVEIR---- 75 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~---- 75 (261)
+|..+.++++|++|++++|.+..+|..++.+++|++|++++|.++.+|..++.+++|++|++++|.+. .+|..+.
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 57788999999999999999999999999999999999999999999999999999999999997654 6776655
Q ss_pred -----ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCcc
Q 042184 76 -----NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGK 149 (261)
Q Consensus 76 -----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~ 149 (261)
.+++|++|++++|.++ .+|..+..+++|+.|++++| ...++..+..+++|+.|++++ +...+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~-----------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~-n~~~~ 243 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR-----------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG-CTALR 243 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC-----------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT-CTTCC
T ss_pred hhhhccCCCCCEEECcCCCcC-----------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC-Ccchh
Confidence 4999999999999664 67888999999999999999 445666789999999999998 44556
Q ss_pred chHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cC-cCCCccccCCCcccEEEeccCCCCC
Q 042184 150 DLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DM-KKLPDWIFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 150 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l-~~l~~~~~~~~~L~~L~l~~~~~~~ 221 (261)
.+|..+..+++|++|++++|...+..+ ..+..++ +|++|++++ .+ +.+|..++.+++|+.+++..+.+..
T Consensus 244 ~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 244 NYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp BCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred hhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCC-CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 678889999999999999998887777 4578899 999999999 54 5899999999999999998876543
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=190.06 Aligned_cols=230 Identities=20% Similarity=0.215 Sum_probs=138.0
Q ss_pred CccccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccc-cchHhhccc
Q 042184 2 NTSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRE-LPVEIRNLK 78 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~ 78 (261)
+..|.++++|++|++++|.+. ..|..+.++++|++|++++|.++.+|. .+..+++|++|++++|.+.. .+..+..++
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 345667777777777777776 335666777777777777777775554 35667777777777777663 345566777
Q ss_pred cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHh
Q 042184 79 KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA 156 (261)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 156 (261)
+|++|++++|.+++ ..+..+..+++|+.|++++| ....+..+..+++|+.|++.+ +......+..+.
T Consensus 129 ~L~~L~l~~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~ 197 (477)
T 2id5_A 129 NLKSLEVGDNDLVY----------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-LNINAIRDYSFK 197 (477)
T ss_dssp TCCEEEECCTTCCE----------ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES-CCCCEECTTCSC
T ss_pred cCCEEECCCCccce----------eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC-CcCcEeChhhcc
Confidence 77777777775542 23456677777888887777 333445567777777777766 222222233445
Q ss_pred CCCCCceEEEeeccccccccc-----------------------ccccCCccccceEEEec-cCcCCCc-cccCCCcccE
Q 042184 157 NLENLENLIVLMKSKEEVLDL-----------------------QSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIR 211 (261)
Q Consensus 157 ~~~~L~~L~l~~n~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~ 211 (261)
.+++|++|++++|...+..+. ..+..++ +|+.|++++ .++.++. .+..+++|+.
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCE
Confidence 555555555555433322221 1234445 555555555 5553332 3445566666
Q ss_pred EEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 212 LGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 212 L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
|++++|.+++..+..+..+++|+.|+++ |.++
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 6666666665555556666777777777 6554
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5.8e-26 Score=201.12 Aligned_cols=226 Identities=12% Similarity=0.156 Sum_probs=181.5
Q ss_pred CCccccCccccceeecCCCCCCC------------------Cccccc--CcccccEEEecCCCce-ecccccCCCCCCcE
Q 042184 1 MNTSIANFKLMKVLDLEDAPVVY------------------LPEGVG--SLLNLHYLSLRNKKVK-IIPKSIGNLLGLES 59 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~~------------------~~~~~~--~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~ 59 (261)
||.+|+++++|++|++++|.++. +|..++ ++++|++|++++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 57889999999999999999996 999998 9999999999999977 89999999999999
Q ss_pred EeCCCCc-cc--ccchHhhcc------ccccceeccceecccCchhhhhhhhhcCC--cccCCCCCCeEecccc--chHH
Q 042184 60 LDLKNTL-VR--ELPVEIRNL------KKLRYLMVYQYYFTSGSSIAEEAAAKLHP--GFGSLTNLQKLCIIEA--DSEV 126 (261)
Q Consensus 60 L~l~~~~-~~--~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~--~~~~ 126 (261)
|++++|. ++ .+|..+..+ ++|++|++++|+++ .+|. .++.+++|+.|++++| .+.+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----------~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----------TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----------SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----------ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 9999998 87 488888776 99999999999764 6787 8999999999999998 4366
Q ss_pred HHHHhccccccEEEeeccCCCccchHHHHhCCCC-CceEEEeeccccccccccccc--CCccccceEEEec-cCc-CCCc
Q 042184 127 LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN-LENLIVLMKSKEEVLDLQSLS--NPPQYLQRLYFKG-DMK-KLPD 201 (261)
Q Consensus 127 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~--~~~~~L~~L~l~~-~l~-~l~~ 201 (261)
+ .+..+++|+.|++++ +....+|..+..+++ |++|++++|.+. ..+ ..+. .++ +|++|++++ .++ .+|.
T Consensus 347 p-~~~~l~~L~~L~L~~--N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~-~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAY--NQITEIPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVS-VMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp C-CCEEEEEESEEECCS--SEEEECCTTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSS-CEEEEECCSSCTTTTTTC
T ss_pred h-hhCCCCCCCEEECCC--CccccccHhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccC-ccCEEECcCCcCCCcchh
Confidence 6 788889999999987 333367777888888 999999998876 333 1222 244 688888887 666 4555
Q ss_pred ccc-------CCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 202 WIF-------KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 202 ~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
.+. .+++|++|++++|.++......+..+++|++|+++ |.++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 555 56678888888888775444555567778888887 7665
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=6.2e-26 Score=187.44 Aligned_cols=223 Identities=21% Similarity=0.301 Sum_probs=146.4
Q ss_pred cccceeecCCCCCCCCcc-cccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184 9 KLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 85 (261)
++|++|++++|.++.++. .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 467777777777775543 667777777777777777744 44577777777777777777766654 667777777777
Q ss_pred cceecccCchhhhhhhhhcCC--cccCCCCCCeEecccc---chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCC
Q 042184 86 YQYYFTSGSSIAEEAAAKLHP--GFGSLTNLQKLCIIEA---DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN 160 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 160 (261)
++|+++ .++. .+..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++
T Consensus 132 ~~n~l~-----------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 132 LGNPYK-----------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA-SDLQSYEPKSLKSIQN 199 (353)
T ss_dssp TTCCCS-----------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE-TTCCEECTTTTTTCSE
T ss_pred CCCCCc-----------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC-CCcCccCHHHHhcccc
Confidence 777554 3443 5666777777777665 222234566666777777766 2333334555666666
Q ss_pred CceEEEeecccccccccccccCCccccceEEEec-cCcC--------------------------------CCccccCCC
Q 042184 161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK--------------------------------LPDWIFKPK 207 (261)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~--------------------------------l~~~~~~~~ 207 (261)
|++|++++|.+..... ..+..++ +|++|++++ .++. +|..+..++
T Consensus 200 L~~L~l~~n~l~~~~~-~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 200 VSHLILHMKQHILLLE-IFVDVTS-SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp EEEEEEECSCSTTHHH-HHHHHTT-TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred CCeecCCCCccccchh-hhhhhcc-cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc
Confidence 6666666665432211 1223344 566666655 4442 444567788
Q ss_pred cccEEEeccCCCCCChhHHhccCCcccceEec-ccccce
Q 042184 208 NVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 208 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
+|++|++++|.++......+.++++|++|+++ |+++.+
T Consensus 278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 99999999999986544456889999999999 887654
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.2e-25 Score=188.34 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=72.4
Q ss_pred cccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEE
Q 042184 135 QLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRL 212 (261)
Q Consensus 135 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L 212 (261)
+|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+ +..+..+++|++|
T Consensus 276 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 276 GVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEINKIDD-NAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp CCCEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred CceEEEecC-ccccccchhhcccCCCCCEEECCCCcccccCh-hHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 444444444 22333345556677777788877777665444 4466777 888888887 77754 4556677888888
Q ss_pred EeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184 213 GLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~ 244 (261)
++++|.+++..+..+..+++|++|+++ |.++.
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcccccChhhccccccccEEECCCCcccc
Confidence 888888877666777778888888888 77653
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.7e-24 Score=184.49 Aligned_cols=222 Identities=20% Similarity=0.206 Sum_probs=172.1
Q ss_pred cccceeecCCCCCCCC-cccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCcccccch-Hhhccccccceec
Q 042184 9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 85 (261)
+++++|++++|.+..+ +..+..+++|++|++++|.++. .|..+.++++|++|++++|.+..++. .+..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5799999999999954 5788999999999999999984 47789999999999999999997765 4688999999999
Q ss_pred cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184 86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN 163 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 163 (261)
++|.+++ ..+..+..+++|+.|++++| ....+..+..+++|+.|++.+ +......+..+..+++|+.
T Consensus 112 s~n~i~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 112 SENKIVI----------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTSCCCE----------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCE
T ss_pred CCCcccc----------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcE
Confidence 9998753 34667899999999999998 444455688899999999998 3444444567899999999
Q ss_pred EEEeecccccccccccccCCccccceEEEec-c-CcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184 164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-D-MKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G 240 (261)
Q Consensus 164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~-l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n 240 (261)
|++++|.+.+..+ ..+..++ +|+.|++++ . +..++.......+|++|++++|.+++.....+..+++|+.|+++ |
T Consensus 181 L~l~~n~i~~~~~-~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 181 LRLRHLNINAIRD-YSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEEESCCCCEECT-TCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred EeCCCCcCcEeCh-hhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 9999998876544 4577777 888888877 3 33555544444566666666666665444555666666666666 5
Q ss_pred ccc
Q 042184 241 TYN 243 (261)
Q Consensus 241 ~~~ 243 (261)
.++
T Consensus 259 ~l~ 261 (477)
T 2id5_A 259 PIS 261 (477)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3e-25 Score=195.65 Aligned_cols=237 Identities=21% Similarity=0.206 Sum_probs=128.8
Q ss_pred cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCccc-ccch-Hhhccccc
Q 042184 4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVR-ELPV-EIRNLKKL 80 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~-~~~~-~~~~l~~L 80 (261)
.|.++++|++|++++|.++.+|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+. .++. .+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 36667777777777777777777777777777777777776633 445566666666666666554 3332 25556666
Q ss_pred cceeccceecccCc---------------hhhhhhh-hhcCCcccCCCCCCeEecccc--chHH-HHHHhccccccEEEe
Q 042184 81 RYLMVYQYYFTSGS---------------SIAEEAA-AKLHPGFGSLTNLQKLCIIEA--DSEV-LKELMKLRQLRKLSI 141 (261)
Q Consensus 81 ~~L~l~~~~~~~~~---------------~~~~~~~-~~l~~~~~~~~~L~~L~l~~~--~~~~-~~~l~~~~~L~~L~l 141 (261)
++|++++|.+++.. .+..+.+ ...+..+..+++|+.|++++| .... +..+..+++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 66666666544200 0000000 012233444444444444444 1111 122444455555555
Q ss_pred eccCCCccchHHHHhCCCCCceEEEeeccccccc--ccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccC
Q 042184 142 RPQNGNGKDLCVLIANLENLENLIVLMKSKEEVL--DLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLS 217 (261)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~ 217 (261)
++ +......+..+..+++|++|++++|.+.+.. ....+..++ +|++|++++ .++.+ |..+..+++|++|++++|
T Consensus 433 ~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 433 SH-SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TT-CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CC-CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 44 2222233444555666666666666554311 112345555 666666666 56533 445566666777777777
Q ss_pred CCCCChhHHhccCCcccceEec-cccc
Q 042184 218 GLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 218 ~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
.+++..+..+.++++| .|+++ |.++
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred ccCcCChhHhCccccc-EEECcCCccc
Confidence 6666666666666666 66666 6554
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=185.17 Aligned_cols=220 Identities=19% Similarity=0.248 Sum_probs=181.2
Q ss_pred cccceeecCCCCCCCC-cccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccch-Hhhccccccceec
Q 042184 9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 85 (261)
+++++|++++|.+..+ +..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 5789999999999944 478889999999999999998544 678899999999999999997765 5788999999999
Q ss_pred cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184 86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE 162 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 162 (261)
++|.++. .-+..+..+++|+.|+++++ ... ....+..+++|+.|+++++ ....++ .+..+++|+
T Consensus 144 ~~N~i~~----------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 144 RNNPIES----------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--NLREIP-NLTPLIKLD 210 (440)
T ss_dssp CSCCCCE----------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS--CCSSCC-CCTTCSSCC
T ss_pred CCCcccc----------cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC--cCcccc-ccCCCcccC
Confidence 9997652 22347888999999999986 222 3345788999999999882 223344 477889999
Q ss_pred eEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-
Q 042184 163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA- 239 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~- 239 (261)
+|++++|.+.+..+ ..+..++ +|+.|++++ .++.+ +..+..+++|+.|++++|.++......+..+++|+.|+++
T Consensus 211 ~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 211 ELDLSGNHLSAIRP-GSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp EEECTTSCCCEECT-TTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred EEECCCCccCccCh-hhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 99999998876655 5688899 999999999 88855 4557789999999999999998777788899999999999
Q ss_pred cccc
Q 042184 240 GTYN 243 (261)
Q Consensus 240 n~~~ 243 (261)
|++.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8763
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=8.4e-25 Score=186.41 Aligned_cols=219 Identities=20% Similarity=0.243 Sum_probs=180.7
Q ss_pred cccceeecCCCCCCC-CcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184 9 KLMKVLDLEDAPVVY-LPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 85 (261)
+++++|++++|.+.. .+..+..+++|+.|++++|.++.+ +..+.++++|++|++++|.+..++.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 579999999999994 467889999999999999999844 46788999999999999999976654 778999999999
Q ss_pred cceecccCchhhhhhhhhcC-CcccCCCCCCeEecccc--chHH-HHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184 86 YQYYFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL 161 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 161 (261)
++|.++ .++ ..+..+++|+.|+++++ ...+ ...+..+++|+.|+++++ . ...++ .+..+++|
T Consensus 155 ~~N~l~-----------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~-l~~~~-~~~~l~~L 220 (452)
T 3zyi_A 155 RNNPIE-----------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-N-IKDMP-NLTPLVGL 220 (452)
T ss_dssp CSCCCC-----------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-C-CSSCC-CCTTCTTC
T ss_pred CCCCcc-----------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-c-ccccc-cccccccc
Confidence 999765 333 46889999999999985 3222 345788999999999882 2 22333 47788999
Q ss_pred ceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
++|++++|.+.+..+ ..+..++ +|+.|++++ .++.+ +..+..+++|+.|++++|.+++.....+..+++|+.|+++
T Consensus 221 ~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 221 EELEMSGNHFPEIRP-GSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CEEECTTSCCSEECG-GGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred cEEECcCCcCcccCc-ccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 999999998876655 5688899 999999999 88854 5567789999999999999998777778889999999999
Q ss_pred -cccc
Q 042184 240 -GTYN 243 (261)
Q Consensus 240 -n~~~ 243 (261)
|++.
T Consensus 299 ~Np~~ 303 (452)
T 3zyi_A 299 HNPWN 303 (452)
T ss_dssp SSCEE
T ss_pred CCCcC
Confidence 8763
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6e-25 Score=179.90 Aligned_cols=217 Identities=20% Similarity=0.178 Sum_probs=128.3
Q ss_pred cccceeecCCCCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184 9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY 86 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 86 (261)
+++++|++++|.++.++ ..++.+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 34555555555555333 2445555555555555555532 4445555555555555555554443322 455555555
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--c--hHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--D--SEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE 162 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 162 (261)
+|.+++ ..+..+..+++|+.|++++| . +..+..+..+++|+.|++++ +....++..+ .++|+
T Consensus 130 ~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~--n~l~~l~~~~--~~~L~ 195 (330)
T 1xku_A 130 ENEITK----------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD--TNITTIPQGL--PPSLT 195 (330)
T ss_dssp SSCCCB----------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS--SCCCSCCSSC--CTTCS
T ss_pred CCcccc----------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC--CccccCCccc--cccCC
Confidence 554432 11223555666666666666 1 12344455666666666655 1122222222 25677
Q ss_pred eEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-
Q 042184 163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA- 239 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~- 239 (261)
+|++++|.+.+..+ ..+..++ +|++|++++ .++.++. .+..+++|++|++++|.++ .++..+..+++|++|+++
T Consensus 196 ~L~l~~n~l~~~~~-~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 196 ELHLDGNKITKVDA-ASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp EEECTTSCCCEECT-GGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred EEECCCCcCCccCH-HHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence 77777776654433 4567777 888888888 7875543 5777888999999999887 455667888999999999
Q ss_pred ccccc
Q 042184 240 GTYNY 244 (261)
Q Consensus 240 n~~~~ 244 (261)
|.++.
T Consensus 273 N~i~~ 277 (330)
T 1xku_A 273 NNISA 277 (330)
T ss_dssp SCCCC
T ss_pred CcCCc
Confidence 87764
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=4.8e-25 Score=180.62 Aligned_cols=221 Identities=19% Similarity=0.179 Sum_probs=117.4
Q ss_pred cccceeecCCCCCCCC-cccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-------------
Q 042184 9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE------------- 73 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~------------- 73 (261)
+++++|++++|.+..+ +..+.++++|++|++++|.++.+ |..++.+++|++|++++|.+..+|..
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 3455555555555432 23444555555555555555422 34444555555555555554444332
Q ss_pred ---------hhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeec
Q 042184 74 ---------IRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 74 ---------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~ 143 (261)
+..+++|++|++++|.++. ....+..+..+ +|+.|++++| ...++..+ .++|+.|++++
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~ 202 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPLEN--------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDH 202 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCCBG--------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCS
T ss_pred ccCccCHhHhCCCccCCEEECCCCcccc--------CCCCcccccCC-ccCEEECcCCCCCccCccc--cCCCCEEECCC
Confidence 3444455555555444321 11223333333 4555555444 11122111 14566666655
Q ss_pred cCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC
Q 042184 144 QNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 144 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 222 (261)
+......+..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+|..+..+++|+.|++++|.+++.
T Consensus 203 -n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 203 -NKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp -SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred -CcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 22233333456667777777777776665433 3456666 777777777 7777777777777777777777777765
Q ss_pred hhHHhcc------CCcccceEec-cccc
Q 042184 223 PIRVLHA------LPNLLQLRLA-GTYN 243 (261)
Q Consensus 223 ~~~~~~~------~~~L~~L~l~-n~~~ 243 (261)
....+.. .++|+.++++ |++.
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ChhHccccccccccccccceEeecCccc
Confidence 4444432 3567777777 6653
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-24 Score=181.15 Aligned_cols=221 Identities=19% Similarity=0.211 Sum_probs=117.4
Q ss_pred ccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccchH-hhcccccc
Q 042184 5 IANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLR 81 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~ 81 (261)
+.++++|++|++++|.+..++ ..+..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+|.. +..+++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 455666666666666666333 35566666666666666666333 3456666666666666666655544 35566666
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccc--------------------------
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLR-------------------------- 134 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~-------------------------- 134 (261)
+|++++|.+++ ..+..+..+++|+.|++++| .... .+..++
T Consensus 145 ~L~L~~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 145 TLSMSNNNLER----------IEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 212 (390)
T ss_dssp EEECCSSCCCB----------CCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEEC
T ss_pred EEECCCCccCc----------cChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccccCCCCcceEEEC
Confidence 66666665432 12334555555666655555 1100 011122
Q ss_pred --------------cccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC
Q 042184 135 --------------QLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL 199 (261)
Q Consensus 135 --------------~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l 199 (261)
+|+.|+++++ ... . ...+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+
T Consensus 213 ~~n~l~~~~~~~~~~L~~L~l~~n-~l~-~-~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~ 287 (390)
T 3o6n_A 213 SHNSINVVRGPVNVELTILKLQHN-NLT-D-TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQ-RLERLYISNNRLVAL 287 (390)
T ss_dssp CSSCCCEEECCCCSSCCEEECCSS-CCC-C-CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCS-SCCEEECCSSCCCEE
T ss_pred CCCeeeeccccccccccEEECCCC-CCc-c-cHHHcCCCCccEEECCCCcCCCcCh-hHccccc-cCCEEECCCCcCccc
Confidence 2333333331 111 1 1245556666666666665554433 3455555 666666666 66655
Q ss_pred CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 200 PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 200 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
+..+..+++|+.|++++|.+++ ++..+..+++|+.|+++ |.++
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred CcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccc
Confidence 5555556666666666666553 23334455555555555 5543
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.1e-24 Score=190.35 Aligned_cols=232 Identities=14% Similarity=0.146 Sum_probs=161.6
Q ss_pred CCccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCce-ec---------------------------cccc
Q 042184 1 MNTSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVK-II---------------------------PKSI 51 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~-~~---------------------------~~~l 51 (261)
+|..+.++++|++|++++|.+..+ +..++.+++|+.|++++|.+. .+ +..+
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 345566666666666666666533 334444555555555554443 33 3334
Q ss_pred CCCCCCcEEeCCCCccc-ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHH
Q 042184 52 GNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLK 128 (261)
Q Consensus 52 ~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~ 128 (261)
..+++|++|++++|.+. ..+..+..+++|++|++++|.+++ ...+..+..+++|+.|++++| ....+.
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV---------KDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC---------CTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC---------cccchhhhCcccCCEEECCCCccCCcCHH
Confidence 45555555555555544 223445555566666666655432 112334888999999999999 555567
Q ss_pred HHhccccccEEEeeccCCCccch--HHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc-CCCcccc
Q 042184 129 ELMKLRQLRKLSIRPQNGNGKDL--CVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK-KLPDWIF 204 (261)
Q Consensus 129 ~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~-~l~~~~~ 204 (261)
.+..+++|+.|+++++......+ +..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++ ..|..+.
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-HAFTSLK-MMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECCSSCCCGGGGGGGT
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh-hhhcccc-CCCEEECCCCccCcCChhHhC
Confidence 78899999999998832222122 2468889999999999998886655 5688899 999999999 887 4566788
Q ss_pred CCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184 205 KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~ 244 (261)
.++.| .|++++|.+++..+..+..+++|+.++++ |+++.
T Consensus 522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 89999 99999999999888888999999999999 98864
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=8.5e-25 Score=193.67 Aligned_cols=223 Identities=15% Similarity=0.162 Sum_probs=123.0
Q ss_pred cccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCceecccccCCCCC-CcEEeCCCCcccccchHhhcc--cc
Q 042184 4 SIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLG-LESLDLKNTLVRELPVEIRNL--KK 79 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l--~~ 79 (261)
.++++++|++|++++|.+. .+| .+..+++|++|++++|.++.+|..+..+++ |++|++++|.++.+|..+..+ ++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 3444444444444444444 444 444444444444444444444444444444 555555555444444433332 24
Q ss_pred ccceeccceecccCchhhhhhhhhcCCccc-------CCCCCCeEecccc-chHHHH-HHhccccccEEEeeccCCCccc
Q 042184 80 LRYLMVYQYYFTSGSSIAEEAAAKLHPGFG-------SLTNLQKLCIIEA-DSEVLK-ELMKLRQLRKLSIRPQNGNGKD 150 (261)
Q Consensus 80 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~L~~L~l~~~-~~~~~~-~l~~~~~L~~L~l~~~~~~~~~ 150 (261)
|++|++++|.+++ ..|..+. .+++|+.|++++| ...++. .+..+++|+.|+++++ ... .
T Consensus 404 L~~L~Ls~N~l~~----------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~-~ 471 (636)
T 4eco_A 404 MSAIDFSYNEIGS----------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLT-E 471 (636)
T ss_dssp EEEEECCSSCTTT----------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCS-B
T ss_pred cCEEECcCCcCCC----------cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCC-C
Confidence 5555555554432 2333444 5566777777776 223333 3445677777777662 222 3
Q ss_pred hHHHHh--------CCCCCceEEEeeccccccccccccc--CCccccceEEEec-cCcCCCccccCCCcccEEEe-----
Q 042184 151 LCVLIA--------NLENLENLIVLMKSKEEVLDLQSLS--NPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGL----- 214 (261)
Q Consensus 151 ~~~~l~--------~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l----- 214 (261)
+|.... ++++|++|++++|.+. ..+ ..+. .++ +|++|++++ .++.+|..+..+++|+.|++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~~~l~-~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS-DDFRATTLP-YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC-GGGSTTTCT-TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBC
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccC-hhhhhccCC-CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcc
Confidence 333221 1226777777777666 333 2233 667 777777777 77777777777777777777
Q ss_pred -ccCCCCCChhHHhccCCcccceEec-ccc
Q 042184 215 -DLSGLTEDPIRVLHALPNLLQLRLA-GTY 242 (261)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~L~~L~l~-n~~ 242 (261)
++|.+.+.++..+.++++|+.|+++ |.+
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 3456666666777777778888777 766
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=5.1e-24 Score=170.89 Aligned_cols=217 Identities=18% Similarity=0.171 Sum_probs=170.7
Q ss_pred ceeecCCCCCCCCcccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCccccc-chHhhccccccceecccee
Q 042184 12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~ 89 (261)
++++.++++++.+|..+ .++|+.|++++|.++.++ ..+..+++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56888888888777644 468999999999988555 4578889999999999988855 6678888999999999985
Q ss_pred -cccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184 90 -FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV 166 (261)
Q Consensus 90 -~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 166 (261)
++. ..+..+..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|++|++
T Consensus 92 ~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 92 QLRS----------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCC----------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred Cccc----------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEEC
Confidence 432 22567888899999999888 333456678889999999987 3333333445778899999999
Q ss_pred eecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 167 LMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 167 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
++|.+.+..+ ..+..++ +|++|++++ .++.+ +..+..+++|+.|++++|.+++..+..+..+++|+.|+++ |+++
T Consensus 161 ~~n~l~~~~~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 161 HGNRISSVPE-RAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCcccccCH-HHhcCcc-ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9998765433 4577788 999999999 88854 6778889999999999999998777788899999999999 8775
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.3e-23 Score=173.10 Aligned_cols=229 Identities=20% Similarity=0.243 Sum_probs=146.8
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 84 (261)
+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|........+..+++|++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEE
Confidence 667777888888887777654 46777778888887777776554 5666777777777664332223355555666666
Q ss_pred ccceecccCc-----------hhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchH
Q 042184 85 VYQYYFTSGS-----------SIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLC 152 (261)
Q Consensus 85 l~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 152 (261)
+++|.+++.. .+....+..++. +..+++|+.++++++ ...... +..+++|+.|+++++ .. ...+
T Consensus 162 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l-~~~~ 237 (347)
T 4fmz_A 162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KI-TDLS 237 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CC-CCCG
T ss_pred ecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC-cc-CCCc
Confidence 6655443210 000001111111 445555555555555 111111 566677777777762 22 2222
Q ss_pred HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184 153 VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP 231 (261)
Q Consensus 153 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 231 (261)
. +..+++|++|++++|.+.+. ..+..++ +|++|++++ .++.++ .+..+++|+.|++++|.+++..+..+..++
T Consensus 238 ~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 238 P-LANLSQLTWLEIGTNQISDI---NAVKDLT-KLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp G-GTTCTTCCEEECCSSCCCCC---GGGTTCT-TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred c-hhcCCCCCEEECCCCccCCC---hhHhcCC-CcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 2 67778888888888876543 3466777 888888888 787774 467788899999999988887888888899
Q ss_pred cccceEec-ccccce
Q 042184 232 NLLQLRLA-GTYNYE 245 (261)
Q Consensus 232 ~L~~L~l~-n~~~~~ 245 (261)
+|++|+++ |.+++.
T Consensus 312 ~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 312 NLTTLFLSQNHITDI 326 (347)
T ss_dssp TCSEEECCSSSCCCC
T ss_pred cCCEEEccCCccccc
Confidence 99999999 877643
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.8e-23 Score=172.21 Aligned_cols=216 Identities=19% Similarity=0.244 Sum_probs=129.2
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 84 (261)
+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 5667777777777777776655 677777777777777777654 46677777777777777776654 66777777777
Q ss_pred ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHH----------
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCV---------- 153 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------- 153 (261)
+++|... .....+..+++|+.|+++++ ....+. +..+++|+.|+++++. . ..++.
T Consensus 139 l~~n~~~-----------~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l-~~~~~~~~l~~L~~L 204 (347)
T 4fmz_A 139 LGANHNL-----------SDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-I-EDISPLASLTSLHYF 204 (347)
T ss_dssp CTTCTTC-----------CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-C-CCCGGGGGCTTCCEE
T ss_pred CCCCCCc-----------ccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-c-cccccccCCCcccee
Confidence 7777432 12233555666666666655 111111 4555556666555411 1 11111
Q ss_pred -----------HHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184 154 -----------LIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 154 -----------~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~ 221 (261)
.+..+++|++|++++|.+.+..+ +..++ +|++|++++ .++.++ .+..+++|++|++++|.+++
T Consensus 205 ~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSP---LANLS-QLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred ecccCCCCCCchhhcCCcCCEEEccCCccCCCcc---hhcCC-CCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCC
Confidence 14455556666666555543322 44555 666666666 555553 35566667777777766665
Q ss_pred ChhHHhccCCcccceEec-ccccc
Q 042184 222 DPIRVLHALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 222 ~~~~~~~~~~~L~~L~l~-n~~~~ 244 (261)
. ..+..+++|+.|+++ |.+++
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCG
T ss_pred C--hhhcCCCCCCEEECcCCcCCC
Confidence 3 345666777777777 66543
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.7e-24 Score=189.23 Aligned_cols=220 Identities=19% Similarity=0.203 Sum_probs=113.4
Q ss_pred ccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccchH-hhcccccc
Q 042184 5 IANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLR 81 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~ 81 (261)
+.++++|++|++++|.+..++ ..++.+++|++|++++|.++.+| ..++.+++|++|++++|.+..+|.. +..+++|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 455666666666666666333 35666666666666666666433 3346666666666666666655544 35666666
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhcccc-------------------------
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQ------------------------- 135 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~------------------------- 135 (261)
+|++++|.+++ ..+..+..+++|+.|++++| ....+ +..+++
T Consensus 151 ~L~Ls~N~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 151 TLSMSNNNLER----------IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDA 218 (597)
T ss_dssp EEECCSSCCCB----------CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEEC
T ss_pred EEEeeCCcCCC----------CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeec
Confidence 66666665542 22334555556666666555 11100 111222
Q ss_pred ---------------ccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCC
Q 042184 136 ---------------LRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL 199 (261)
Q Consensus 136 ---------------L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l 199 (261)
|+.|+++++ ... . +..+..+++|++|++++|.+.+..+ ..+..++ +|+.|++++ .++.+
T Consensus 219 s~n~l~~~~~~~~~~L~~L~L~~n-~l~-~-~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~l 293 (597)
T 3oja_B 219 SHNSINVVRGPVNVELTILKLQHN-NLT-D-TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQ-RLERLYISNNRLVAL 293 (597)
T ss_dssp CSSCCCEEECSCCSCCCEEECCSS-CCC-C-CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCS-SCCEEECTTSCCCEE
T ss_pred cCCcccccccccCCCCCEEECCCC-CCC-C-ChhhccCCCCCEEECCCCccCCCCH-HHhcCcc-CCCEEECCCCCCCCC
Confidence 222222221 111 1 1334555566666666655554433 3345555 566666655 55555
Q ss_pred CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccc
Q 042184 200 PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTY 242 (261)
Q Consensus 200 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~ 242 (261)
|..+..+++|+.|++++|.++. ++..+..+++|+.|+++ |.+
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCC
T ss_pred CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCC
Confidence 5544455556666665555553 33334444555555555 444
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.3e-24 Score=196.81 Aligned_cols=227 Identities=13% Similarity=0.159 Sum_probs=166.1
Q ss_pred CCccccCccccceeecCCCCCCC------------------Cccccc--CcccccEEEecCCCce-ecccccCCCCCCcE
Q 042184 1 MNTSIANFKLMKVLDLEDAPVVY------------------LPEGVG--SLLNLHYLSLRNKKVK-IIPKSIGNLLGLES 59 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~~------------------~~~~~~--~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~ 59 (261)
||..|+++++|++|++++|.+.. +|..++ ++++|++|++++|.+. .+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 47789999999999999999997 898887 9999999999999876 88988999999999
Q ss_pred EeCCCCc-cc--ccchHhhccc-------cccceeccceecccCchhhhhhhhhcCC--cccCCCCCCeEecccc-chHH
Q 042184 60 LDLKNTL-VR--ELPVEIRNLK-------KLRYLMVYQYYFTSGSSIAEEAAAKLHP--GFGSLTNLQKLCIIEA-DSEV 126 (261)
Q Consensus 60 L~l~~~~-~~--~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~-~~~~ 126 (261)
|++++|. ++ .+|..+..++ +|++|++++|.++ .+|. .++.+++|+.|++++| ...+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----------~ip~~~~l~~L~~L~~L~Ls~N~l~~l 588 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----------EFPASASLQKMVKLGLLDCVHNKVRHL 588 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----------BCCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----------ccCChhhhhcCCCCCEEECCCCCcccc
Confidence 9999998 77 4787777666 9999999999764 6777 7888889999999888 3355
Q ss_pred HHHHhccccccEEEeeccCCCccchHHHHhCCCC-CceEEEeecccccccccccccCCc-cccceEEEec-cCcCC-C--
Q 042184 127 LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN-LENLIVLMKSKEEVLDLQSLSNPP-QYLQRLYFKG-DMKKL-P-- 200 (261)
Q Consensus 127 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~-~l~~l-~-- 200 (261)
+ .++.+++|+.|++++ +... .+|..+..+++ |++|++++|.+. ..+ ..+...+ ++|+.|++++ .++.. |
T Consensus 589 p-~~~~L~~L~~L~Ls~-N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDY-NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp C-CCCTTSEESEEECCS-SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred h-hhcCCCcceEEECcC-Cccc-cchHHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCccccc
Confidence 5 777888888888887 2222 67777888887 888888888776 333 2233332 0377777776 55422 2
Q ss_pred -cccc--CCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 201 -DWIF--KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 201 -~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
..+. .+++|+.|++++|.++......+..+++|+.|+++ |.++
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 1122 23466666666666664333334456666666666 5554
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6.5e-24 Score=177.63 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=180.1
Q ss_pred ccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccccc-chHhhcccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVREL-PVEIRNLKK 79 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~ 79 (261)
..|..+++|++|++++|.+..++ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..+ +..+..+++
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 47888999999999999988554 5678899999999999999887766 47899999999999988855 445788899
Q ss_pred ccceeccceecccCc-----------------------------hhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHH
Q 042184 80 LRYLMVYQYYFTSGS-----------------------------SIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKE 129 (261)
Q Consensus 80 L~~L~l~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~ 129 (261)
|++|++++|.+++.. .+..+.+..++. ...++|+.|++++| ... ...
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~-~~~ 243 (390)
T 3o6n_A 167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD-TAW 243 (390)
T ss_dssp CCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCC-CGG
T ss_pred CCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcc-cHH
Confidence 999999998876420 000000000111 12346777777777 222 246
Q ss_pred HhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCc
Q 042184 130 LMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKN 208 (261)
Q Consensus 130 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~ 208 (261)
+..+++|+.|++++ +......+..+..+++|++|++++|.+.+... .+..++ +|++|++++ .++.+|..+..+++
T Consensus 244 l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~-~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 244 LLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQPIP-TLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp GGGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECCSSCCCEEEC--SSSCCT-TCCEEECCSSCCCCCGGGHHHHTT
T ss_pred HcCCCCccEEECCC-CcCCCcChhHccccccCCEEECCCCcCcccCc--ccCCCC-CCCEEECCCCcceecCccccccCc
Confidence 78899999999998 44455567788999999999999998875432 346688 999999999 99999988888999
Q ss_pred ccEEEeccCCCCCChhHHhccCCcccceEec-cccccee
Q 042184 209 VIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYEL 246 (261)
Q Consensus 209 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~~ 246 (261)
|+.|++++|.+++.. +..+++|+.|+++ |+++.+.
T Consensus 320 L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 320 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CCEEECCCCccceeC---chhhccCCEEEcCCCCccchh
Confidence 999999999998753 6789999999999 9886543
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.1e-24 Score=192.98 Aligned_cols=227 Identities=11% Similarity=0.151 Sum_probs=131.1
Q ss_pred ccceeecCCCCCCCCcc--cccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccc-ccceecc
Q 042184 10 LMKVLDLEDAPVVYLPE--GVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKK-LRYLMVY 86 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~ 86 (261)
+|++|++++|.+..+|. .++.+++|+.|++++|.++.+| .++.+++|++|++++|.+..+|..+..+++ |+.|+++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc
Confidence 55555555555554444 4555555555555555544444 444455555555555554444444444444 5555554
Q ss_pred ceecccC--------------chhhhh----hhhhcCCccc--CCCCCCeEecccc-chHHHHH-HhccccccEEEeecc
Q 042184 87 QYYFTSG--------------SSIAEE----AAAKLHPGFG--SLTNLQKLCIIEA-DSEVLKE-LMKLRQLRKLSIRPQ 144 (261)
Q Consensus 87 ~~~~~~~--------------~~~~~~----~~~~l~~~~~--~~~~L~~L~l~~~-~~~~~~~-l~~~~~L~~L~l~~~ 144 (261)
+|.++.. +.+..+ ....++..+. .+++|+.|++++| ...++.. +..+++|+.|+++++
T Consensus 628 ~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp SSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred CCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence 4443210 000000 1112222222 2346778888777 3344444 346788888888772
Q ss_pred CCCccchHHHHh--------CCCCCceEEEeeccccccccccccc--CCccccceEEEec-cCcCCCccccCCCcccEEE
Q 042184 145 NGNGKDLCVLIA--------NLENLENLIVLMKSKEEVLDLQSLS--NPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLG 213 (261)
Q Consensus 145 ~~~~~~~~~~l~--------~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~ 213 (261)
.. ..+|..+. ++++|++|++++|.+. ..+ ..+. .++ +|+.|++++ .++.+|..+..+++|+.|+
T Consensus 708 -~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp-~~l~~~~l~-~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 708 -LM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS-DDFRATTLP-YLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782 (876)
T ss_dssp -CC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC-GGGSTTTCT-TCCEEECCSSCCSSCCCGGGGCTTCCEEE
T ss_pred -cC-CccChHHhccccccccccCCccEEECCCCCCc-cch-HHhhhccCC-CcCEEEeCCCCCCccchhhhcCCCCCEEE
Confidence 22 24444332 2337888888888776 333 2343 677 888888888 7888887788888888888
Q ss_pred ecc------CCCCCChhHHhccCCcccceEec-ccc
Q 042184 214 LDL------SGLTEDPIRVLHALPNLLQLRLA-GTY 242 (261)
Q Consensus 214 l~~------~~~~~~~~~~~~~~~~L~~L~l~-n~~ 242 (261)
+++ |.+.+.++..+.++++|+.|+++ |.+
T Consensus 783 Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 865 66677777778888888888888 776
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=7.2e-24 Score=183.67 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=64.5
Q ss_pred ccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccc--cchHhhcccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE--LPVEIRNLKK 79 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~l~~ 79 (261)
..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|.. .+++|++|++++|.+.. +|..++.+++
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence 4567788888888888887744 56777888888888888887777665 67788888888887763 5567777777
Q ss_pred ccceeccceecc
Q 042184 80 LRYLMVYQYYFT 91 (261)
Q Consensus 80 L~~L~l~~~~~~ 91 (261)
|++|++++|.++
T Consensus 117 L~~L~L~~n~l~ 128 (520)
T 2z7x_B 117 LKFLGLSTTHLE 128 (520)
T ss_dssp CCEEEEEESSCC
T ss_pred ceEEEecCcccc
Confidence 777777766553
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=8e-24 Score=186.61 Aligned_cols=222 Identities=17% Similarity=0.085 Sum_probs=147.2
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccccc---chHhhccccc
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVREL---PVEIRNLKKL 80 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L 80 (261)
+..+++|++|++++|.+..+| .+ .+++|+.|++++|... .. .+..+++|++|++++|.+... +..+..+++|
T Consensus 303 l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp CCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred ccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 445555666666666555555 23 5556666666655322 22 345677888888888877633 6777788888
Q ss_pred cceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHH-HHHhccccccEEEeeccCCCccchHHHHhC
Q 042184 81 RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVL-KELMKLRQLRKLSIRPQNGNGKDLCVLIAN 157 (261)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 157 (261)
++|++++|.++ .++..+..+++|+.|++++| ....+ ..+..+++|+.|++++ +......+..+..
T Consensus 379 ~~L~L~~n~l~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 379 RHLDLSFNGAI-----------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY-TNTKIDFDGIFLG 446 (606)
T ss_dssp CEEECCSCSEE-----------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT-SCCEECCTTTTTT
T ss_pred cEeECCCCccc-----------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC-CCCCccchhhhcC
Confidence 88888888554 45677777888888888877 32233 4567777888888876 3344445566777
Q ss_pred CCCCceEEEeecccccccccccccCCccccceEEEec-cCcC-CCccccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184 158 LENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK-LPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ 235 (261)
Q Consensus 158 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 235 (261)
+++|++|++++|.+.+......+..++ +|++|++++ .++. .|..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCC-CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 777888887777766532224466677 777777777 6664 3455667777777777777777766667777777777
Q ss_pred eEec-cccc
Q 042184 236 LRLA-GTYN 243 (261)
Q Consensus 236 L~l~-n~~~ 243 (261)
|+++ |.++
T Consensus 526 L~l~~N~l~ 534 (606)
T 3vq2_A 526 LDCSFNRIE 534 (606)
T ss_dssp EECTTSCCC
T ss_pred EECCCCcCc
Confidence 7777 6664
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=7.9e-24 Score=171.43 Aligned_cols=219 Identities=16% Similarity=0.153 Sum_probs=182.6
Q ss_pred ceeecCCCCCCCCcccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccccc---chHhhccccccceeccc
Q 042184 12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVREL---PVEIRNLKKLRYLMVYQ 87 (261)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~ 87 (261)
+.++.++++++.+|..+. ++|++|++++|.++.+|.. +..+++|++|++++|.+... +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 578889989998887554 7899999999999988765 68999999999999998743 67788899999999999
Q ss_pred eecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH--HHHhccccccEEEeeccCCCccchHHHHhCCCCCceE
Q 042184 88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL--KELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL 164 (261)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 164 (261)
|.++ .++..+..+++|+.|++++| ....+ ..+..+++|+.|++++ +......+..+..+++|++|
T Consensus 88 n~i~-----------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 88 NGVI-----------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSEE-----------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEE
T ss_pred Cccc-----------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEE
Confidence 9654 57778899999999999999 32222 4688899999999988 34444556678889999999
Q ss_pred EEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cc
Q 042184 165 IVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GT 241 (261)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~ 241 (261)
++++|.+.+......+..++ +|++|++++ .++.+ +..+..+++|++|++++|.+++.....+..+++|+.|+++ |.
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 99999887522224578888 999999999 88865 6678889999999999999998776678899999999999 98
Q ss_pred ccce
Q 042184 242 YNYE 245 (261)
Q Consensus 242 ~~~~ 245 (261)
+++.
T Consensus 235 l~~~ 238 (306)
T 2z66_A 235 IMTS 238 (306)
T ss_dssp CCBC
T ss_pred Cccc
Confidence 8654
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=3.4e-24 Score=175.59 Aligned_cols=218 Identities=17% Similarity=0.158 Sum_probs=162.6
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCccccc-chHhhccccccceeccc
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQ 87 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~ 87 (261)
++++++++++.+..+|..+. ++++.|++++|.++.+ |..+..+++|++|++++|.++.+ +..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 79999999999998887664 7899999999999955 45789999999999999999955 67889999999999999
Q ss_pred eecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCC-ccchHHHHhCC------
Q 042184 88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGN-GKDLCVLIANL------ 158 (261)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~l~~~------ 158 (261)
|.++ .+|..+. ++|+.|++++| ... .+..+..+++|+.|+++++... ....+..+..+
T Consensus 112 n~l~-----------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 112 NHLV-----------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp SCCC-----------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred CcCC-----------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 9765 4454443 67777777777 222 2334667777777777662111 01112222222
Q ss_pred --------------CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCC
Q 042184 159 --------------ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 159 --------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~ 222 (261)
++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.++. .+..+++|++|++++|.++ .
T Consensus 179 l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIEL-EDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp CCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT-TSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred CcCCCCCccCccccCCCCEEECCCCcCCccCH-HHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 466777777776654433 4577788 899999998 8886654 5778899999999999888 4
Q ss_pred hhHHhccCCcccceEec-ccccce
Q 042184 223 PIRVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 223 ~~~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
++..+..+++|++|+++ |.++..
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBC
T ss_pred cChhhhcCccCCEEECCCCCCCcc
Confidence 55668889999999999 888644
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=179.60 Aligned_cols=127 Identities=16% Similarity=0.239 Sum_probs=104.1
Q ss_pred CCccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhccc
Q 042184 1 MNTSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLK 78 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 78 (261)
||..+. ++|++|++++|.+..++ ..+..+++|++|++++|.++.+ |..++.+++|++|++++|.++.+|.. .++
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 344444 78999999999999655 6889999999999999999954 77899999999999999999988776 899
Q ss_pred cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccc--cEEEeec
Q 042184 79 KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQL--RKLSIRP 143 (261)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L--~~L~l~~ 143 (261)
+|++|++++|.+++ ..+|..++.+++|+.|++++| .. ..+..+++| +.|++++
T Consensus 91 ~L~~L~L~~N~l~~---------~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 91 NLKHLDLSFNAFDA---------LPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp CCSEEECCSSCCSS---------CCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred CccEEeccCCcccc---------ccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 99999999998753 246788999999999999988 32 234555566 7776665
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=4.2e-23 Score=180.50 Aligned_cols=239 Identities=19% Similarity=0.215 Sum_probs=161.6
Q ss_pred ccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCccccc--chHhhcccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL--PVEIRNLKK 79 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~ 79 (261)
..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+|.. .+++|++|++++|.+..+ |..+..+++
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence 5678888888899988888844 56788888888888888888877766 788888888888888754 467888888
Q ss_pred ccceeccceecccC-------c-----hhhhh------------------------------------------------
Q 042184 80 LRYLMVYQYYFTSG-------S-----SIAEE------------------------------------------------ 99 (261)
Q Consensus 80 L~~L~l~~~~~~~~-------~-----~~~~~------------------------------------------------ 99 (261)
|++|++++|.+++. + .+..+
T Consensus 148 L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp CCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred ccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 88888877765431 0 00000
Q ss_pred -----------------------------------------------------------hh-hhcCCcc-----------
Q 042184 100 -----------------------------------------------------------AA-AKLHPGF----------- 108 (261)
Q Consensus 100 -----------------------------------------------------------~~-~~l~~~~----------- 108 (261)
.. ..+|..+
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 00 0122221
Q ss_pred ------------------------------------------cCCCCCCeEecccc--chHHHHHHhccccccEEEeecc
Q 042184 109 ------------------------------------------GSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQ 144 (261)
Q Consensus 109 ------------------------------------------~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~ 144 (261)
..+++|+.|++++| .+..+..+..+++|+.|++++
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~- 386 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR- 386 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS-
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC-
Confidence 45567777777777 444556667777777777776
Q ss_pred CCCcc--chHHHHhCCCCCceEEEeeccccccccccccc---------------------CCccccceEEEec-cCcCCC
Q 042184 145 NGNGK--DLCVLIANLENLENLIVLMKSKEEVLDLQSLS---------------------NPPQYLQRLYFKG-DMKKLP 200 (261)
Q Consensus 145 ~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~---------------------~~~~~L~~L~l~~-~l~~l~ 200 (261)
+.... ..+..+..+++|++|++++|.+.+..+...+. .++++|++|++++ .++.+|
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip 466 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP 466 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCC
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccC
Confidence 22222 34556777788888888887766523322122 2212677777777 777777
Q ss_pred ccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184 201 DWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~ 244 (261)
..+..+++|+.|++++|.++......+..+++|+.|+++ |++..
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 777778888888888888885444447788888888888 87753
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-23 Score=185.31 Aligned_cols=231 Identities=15% Similarity=0.125 Sum_probs=181.8
Q ss_pred CccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccccc-chHhhccc
Q 042184 2 NTSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVREL-PVEIRNLK 78 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~~l~ 78 (261)
+..|..+++|++|++++|.+..++ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+..+ +..+..++
T Consensus 92 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 357889999999999999999655 5678999999999999999977765 58899999999999998855 44688899
Q ss_pred cccceeccceecccCchhhhhhhhhcCC------------cc---------------------cCCCCCCeEeccccchH
Q 042184 79 KLRYLMVYQYYFTSGSSIAEEAAAKLHP------------GF---------------------GSLTNLQKLCIIEADSE 125 (261)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~------------~~---------------------~~~~~L~~L~l~~~~~~ 125 (261)
+|++|++++|.+++. ....++. .+ ...++|+.|++++|.-.
T Consensus 172 ~L~~L~L~~N~l~~~------~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 172 SLQNLQLSSNRLTHV------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT 245 (597)
T ss_dssp TCCEEECTTSCCSBC------CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCC
T ss_pred cCcEEECcCCCCCCc------ChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCC
Confidence 999999999987642 1111110 00 11235677777777111
Q ss_pred HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCcccc
Q 042184 126 VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIF 204 (261)
Q Consensus 126 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~ 204 (261)
.+..+..+++|+.|++++ +......|..+..+++|++|++++|.+.+... .+..+| +|+.|++++ .++.+|..+.
T Consensus 246 ~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~-~L~~L~Ls~N~l~~i~~~~~ 321 (597)
T 3oja_B 246 DTAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQPIP-TLKVLDLSHNHLLHVERNQP 321 (597)
T ss_dssp CCGGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECTTSCCCEEEC--SSSCCT-TCCEEECCSSCCCCCGGGHH
T ss_pred CChhhccCCCCCEEECCC-CccCCCCHHHhcCccCCCEEECCCCCCCCCCc--ccccCC-CCcEEECCCCCCCccCcccc
Confidence 135688899999999998 45555667889999999999999998876432 356688 999999999 9999998888
Q ss_pred CCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccce
Q 042184 205 KPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
.+++|+.|++++|.+++.. +..+++|+.|+++ |+++.+
T Consensus 322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 8999999999999998753 6778999999999 987643
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.9e-24 Score=185.63 Aligned_cols=229 Identities=17% Similarity=0.154 Sum_probs=181.4
Q ss_pred CccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceeccccc--------------------CCCCCCcEEe
Q 042184 2 NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSI--------------------GNLLGLESLD 61 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l--------------------~~l~~L~~L~ 61 (261)
+..+..+++|++|++++|.+..+|..+..+ +|+.|++++|.+..+|... ..+++|++|+
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 353 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred hhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEe
Confidence 455677888888888888777777777666 7777777777665444311 4678888899
Q ss_pred CCCCccccc---chHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHH-HHHhcccc
Q 042184 62 LKNTLVREL---PVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVL-KELMKLRQ 135 (261)
Q Consensus 62 l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~-~~l~~~~~ 135 (261)
+++|.+... +..+..+++|++|++++|.++ .++..+..+++|+.|++++| ....+ ..+..+++
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-----------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-----------EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred CcCCccCccccccccccccCccCEEECCCCccc-----------cccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 988887743 677888999999999998654 45556889999999999998 22222 45788999
Q ss_pred ccEEEeeccCCCccchHHHHhCCCCCceEEEeecccc-cccccccccCCccccceEEEec-cCcCC-CccccCCCcccEE
Q 042184 136 LRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKE-EVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRL 212 (261)
Q Consensus 136 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L 212 (261)
|+.|++++ +......+..+..+++|++|++++|.+. +..+ ..+..++ +|++|++++ .++.+ |..+..+++|++|
T Consensus 423 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 423 LIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CCEEECTT-SCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEeCcC-CcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhccc-CCCEEECCCCccccCChhhhhcccCCCEE
Confidence 99999988 3444556777889999999999999876 3444 5578888 999999999 88865 7778899999999
Q ss_pred EeccCCCCCChhHHhccCCcccceEec-ccccce
Q 042184 213 GLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
++++|.+++..+..+.++++|+.|+++ |+++.+
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 999999998877788999999999999 988654
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=9.8e-24 Score=181.20 Aligned_cols=213 Identities=16% Similarity=0.121 Sum_probs=172.6
Q ss_pred CccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceec
Q 042184 7 NFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMV 85 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 85 (261)
.+++|++|++++|.+..+ |..++.+++|++|++++|.++..++ +..+++|++|++++|.++.++. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 456899999999999955 4789999999999999999985554 8899999999999999886653 388999999
Q ss_pred cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHh-CCCCCc
Q 042184 86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA-NLENLE 162 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~ 162 (261)
++|.+++ ++. ..+++|+.|++++| ....+..++.+++|+.|++++ +......+..+. .+++|+
T Consensus 107 ~~N~l~~-----------~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 107 ANNNISR-----------VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp CSSCCCC-----------EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCC
T ss_pred cCCcCCC-----------CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCccc
Confidence 9997764 222 24678999999998 444555678889999999988 444444555665 788999
Q ss_pred eEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184 163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G 240 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n 240 (261)
+|++++|.+.+..+ ...++ +|+.|++++ .++.+|..+..+++|+.|++++|.+++ ++..+..+++|+.|+++ |
T Consensus 173 ~L~Ls~N~l~~~~~---~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 173 HLNLQYNFIYDVKG---QVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EEECTTSCCCEEEC---CCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred EEecCCCccccccc---cccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 99999998876533 34577 999999999 898888888889999999999999885 55567888999999999 8
Q ss_pred ccc
Q 042184 241 TYN 243 (261)
Q Consensus 241 ~~~ 243 (261)
.+.
T Consensus 248 ~l~ 250 (487)
T 3oja_A 248 GFH 250 (487)
T ss_dssp CBC
T ss_pred CCc
Confidence 776
No 40
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=7.4e-24 Score=172.49 Aligned_cols=215 Identities=16% Similarity=0.107 Sum_probs=159.4
Q ss_pred ccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 5 IANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
+..+++|++|++++|.+..++ ..+..+++|++|++++|.++..+. +..+++|++|++++|.++.++ ..++|++|
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence 345679999999999999554 688999999999999999985554 889999999999999988655 33788899
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHH-hCCCC
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLI-ANLEN 160 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~ 160 (261)
++++|.+++ ++. ..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+ ..+++
T Consensus 105 ~l~~n~l~~-----------~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 105 HAANNNISR-----------VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDT 170 (317)
T ss_dssp ECCSSCCSE-----------EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTT
T ss_pred ECCCCccCC-----------cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCc
Confidence 998887653 222 23567888888888 333344567778888888877 33333333444 46778
Q ss_pred CceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 161 LENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
|++|++++|.+.+... ...++ +|++|++++ .++.++..+..+++|+.|++++|.+++ ++..+..+++|+.|+++
T Consensus 171 L~~L~L~~N~l~~~~~---~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 171 LEHLNLQYNFIYDVKG---QVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CCEEECTTSCCCEEEC---CCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred CCEEECCCCcCccccc---ccccc-cCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEcc
Confidence 8888888887765422 33466 888888888 787777777778888888888888774 45556777888888888
Q ss_pred -cccc
Q 042184 240 -GTYN 243 (261)
Q Consensus 240 -n~~~ 243 (261)
|.++
T Consensus 246 ~N~~~ 250 (317)
T 3o53_A 246 GNGFH 250 (317)
T ss_dssp TCCCB
T ss_pred CCCcc
Confidence 7775
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=2e-22 Score=172.44 Aligned_cols=226 Identities=19% Similarity=0.233 Sum_probs=137.4
Q ss_pred cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
.+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. ++.+++|++|++++|.+..++. +..+++|++|
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 36788999999999999887776 8889999999999999887666 8889999999999998887765 7888999999
Q ss_pred eccceecccCchhhh----------hhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchH
Q 042184 84 MVYQYYFTSGSSIAE----------EAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLC 152 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 152 (261)
++++|.+++...+.. +.... ...+..+++|+.|++++| .... ..+..+++|+.|+++++ ......+
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTD-LKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNN-QISDITP 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCC-CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccC-chhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCC-ccccccc
Confidence 999988764200000 00000 012455666666666666 1111 22455566666666551 1111111
Q ss_pred HHHhCCCCCceEEEeecc----------------------cccccccccccCCccccceEEEec-cCcCCCccccCCCcc
Q 042184 153 VLIANLENLENLIVLMKS----------------------KEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNV 209 (261)
Q Consensus 153 ~~l~~~~~L~~L~l~~n~----------------------~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L 209 (261)
++.+++|++|++++|. +.+..+ +..++ +|+.|++++ .++.++. +..+++|
T Consensus 217 --~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L 289 (466)
T 1o6v_A 217 --LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLT-KLTELKLGANQISNISP-LAGLTAL 289 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCT-TCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred --ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh---hhcCC-CCCEEECCCCccCcccc-ccCCCcc
Confidence 3334444444444443 332221 33444 555555555 5554443 4455666
Q ss_pred cEEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184 210 IRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 210 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~ 244 (261)
+.|++++|.+++..+ +..+++|+.|+++ |.+++
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 666666666554332 5566666666666 65543
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=9.5e-24 Score=186.12 Aligned_cols=222 Identities=18% Similarity=0.141 Sum_probs=179.8
Q ss_pred CccccceeecCCCCCC-CCcccccCcccccEEEecCCCceec---ccccCCCCCCcEEeCCCCcccccchHhhccccccc
Q 042184 7 NFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVKII---PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRY 82 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 82 (261)
.+++|++|++++|... .. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.+..++..+..+++|++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence 7889999999999544 33 456889999999999998743 67788899999999999998888888888999999
Q ss_pred eeccceecccCchhhhhhhhhcC-CcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCcc-chHHHHhCC
Q 042184 83 LMVYQYYFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGK-DLCVLIANL 158 (261)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~ 158 (261)
|++++|.+++ ..+ ..+..+++|+.|++++| ....+..+..+++|+.|+++++ ...+ ..+..+..+
T Consensus 404 L~l~~n~l~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 404 LDFQHSTLKR----------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANT 472 (606)
T ss_dssp EECTTSEEES----------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTC
T ss_pred eECCCCccCC----------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccC
Confidence 9999998764 223 57788999999999998 4456667888999999999872 2232 357778889
Q ss_pred CCCceEEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCC-cccc
Q 042184 159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP-NLLQ 235 (261)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~ 235 (261)
++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.+ |..+..+++|+.|++++|.++. ++..+..++ +|++
T Consensus 473 ~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISW-GVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAF 549 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCE
T ss_pred CCCCEEECCCCcCCccCh-hhhcccc-cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcE
Confidence 999999999998876555 4577888 999999999 88855 6778889999999999999884 455577886 5999
Q ss_pred eEec-ccccc
Q 042184 236 LRLA-GTYNY 244 (261)
Q Consensus 236 L~l~-n~~~~ 244 (261)
++++ |++..
T Consensus 550 l~l~~N~~~c 559 (606)
T 3vq2_A 550 FNLTNNSVAC 559 (606)
T ss_dssp EECCSCCCCC
T ss_pred EEccCCCccc
Confidence 9999 88753
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.7e-23 Score=164.51 Aligned_cols=124 Identities=23% Similarity=0.241 Sum_probs=57.5
Q ss_pred ccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccc-hHhhccccccceecc
Q 042184 10 LMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVY 86 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 86 (261)
+|++|++++|.++.++ ..+.++++|++|++++|.++.++ ..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 3555555555555332 24445555555555555554332 23445555555555555554322 334455555555555
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-c-h-HHHHHHhccccccEEEeec
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-D-S-EVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~-~-~~~~~l~~~~~L~~L~l~~ 143 (261)
+|.+++ ..+..+..+++|+.|++++| . . .++..+..+++|+.|++++
T Consensus 109 ~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 109 ETNLAS----------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp TSCCCC----------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCccc----------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 554432 11113444555555555554 1 1 1334444445555555544
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=7.7e-23 Score=174.26 Aligned_cols=208 Identities=19% Similarity=0.214 Sum_probs=134.2
Q ss_pred ccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRY 82 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 82 (261)
.+++++++|++|++++|.++.+| .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.++ +..+++|++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 35667888888888888888776 5778888888888888888765 778888888888888887664 677888888
Q ss_pred eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184 83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL 161 (261)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 161 (261)
|++++|.+++ ++ ++.+++|+.|++++| ...+ .++.+++|+.|+++++. ..+.+ .+..+++|
T Consensus 111 L~L~~N~l~~-----------l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~-~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 111 LNCDTNKLTK-----------LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNK-KITKL--DVTPQTQL 172 (457)
T ss_dssp EECCSSCCSC-----------CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCS-CCCCC--CCTTCTTC
T ss_pred EECCCCcCCe-----------ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCC-ccccc--ccccCCcC
Confidence 8888887652 22 667777777777777 2222 25566777777776621 12222 24556666
Q ss_pred ceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-
Q 042184 162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA- 239 (261)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~- 239 (261)
++|++++|.+.+. + +..++ +|+.|++++ .++.++ +..+++|+.|++++|.+++. + +..+++|+.|+++
T Consensus 173 ~~L~ls~n~l~~l-~---l~~l~-~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D---VSQNK-LLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CEEECCSSCCCCC-C---CTTCT-TCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCS
T ss_pred CEEECCCCcccee-c---cccCC-CCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeC
Confidence 6666666655442 2 34455 566666655 555442 44555555555555555542 2 4455555555555
Q ss_pred cccc
Q 042184 240 GTYN 243 (261)
Q Consensus 240 n~~~ 243 (261)
|.++
T Consensus 243 N~l~ 246 (457)
T 3bz5_A 243 NPLT 246 (457)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 5544
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=9.4e-23 Score=163.50 Aligned_cols=202 Identities=19% Similarity=0.196 Sum_probs=168.6
Q ss_pred ccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCc-cccc-chHhhccccccce
Q 042184 8 FKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTL-VREL-PVEIRNLKKLRYL 83 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~L~~L 83 (261)
.++|++|++++|.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468999999999999655 5788999999999999999854 6788999999999999997 7765 6678899999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL 161 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 161 (261)
++++|.+++ ..+..+..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|
T Consensus 111 ~l~~n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 111 HLDRCGLQE----------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSL 179 (285)
T ss_dssp ECTTSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTC
T ss_pred ECCCCcCCE----------ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCcccc
Confidence 999998763 33567889999999999999 333344578899999999998 33333334468889999
Q ss_pred ceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCC
Q 042184 162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~ 222 (261)
++|++++|.+.+..+ ..+..++ +|+.|++++ .++.++. .+..+++|+.|++++|.+...
T Consensus 180 ~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHP-HAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CEEECCCCcccccCH-hHccCcc-cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 999999998876655 5578888 999999999 9998775 478899999999999998764
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=170.38 Aligned_cols=209 Identities=20% Similarity=0.162 Sum_probs=169.4
Q ss_pred ccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccch--Hhhccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPV--EIRNLK 78 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~--~~~~l~ 78 (261)
..|.++++|++|++++|.++.+ +..++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..++. .+..++
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 3688999999999999999954 56789999999999999999977765 7899999999999999997776 678899
Q ss_pred cccceecccee-cccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHH-
Q 042184 79 KLRYLMVYQYY-FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVL- 154 (261)
Q Consensus 79 ~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~- 154 (261)
+|++|++++|. ++. ..+..+..+++|+.|++++| ....+..+..+++|++|++++ +. ...++..
T Consensus 150 ~L~~L~l~~n~~~~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~-l~~~~~~~ 217 (353)
T 2z80_A 150 KLQILRVGNMDTFTK----------IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM-KQ-HILLLEIF 217 (353)
T ss_dssp TCCEEEEEESSSCCE----------ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-SC-STTHHHHH
T ss_pred CCcEEECCCCccccc----------cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC-Cc-cccchhhh
Confidence 99999999984 331 23467888999999999998 444567788899999999988 22 3444443
Q ss_pred HhCCCCCceEEEeeccccccccc------------------------------ccccCCccccceEEEec-cCcCCCccc
Q 042184 155 IANLENLENLIVLMKSKEEVLDL------------------------------QSLSNPPQYLQRLYFKG-DMKKLPDWI 203 (261)
Q Consensus 155 l~~~~~L~~L~l~~n~~~~~~~~------------------------------~~~~~~~~~L~~L~l~~-~l~~l~~~~ 203 (261)
+..+++|++|++++|.+.+.... ..+..++ +|++|++++ .++.+|..+
T Consensus 218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~-~L~~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELEFSRNQLKSVPDGI 296 (353)
T ss_dssp HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT-TCCEEECCSSCCCCCCTTT
T ss_pred hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhccc-CCCEEECCCCCCCccCHHH
Confidence 45688999999999977653210 1245677 999999999 999999875
Q ss_pred -cCCCcccEEEeccCCCCCChh
Q 042184 204 -FKPKNVIRLGLDLSGLTEDPI 224 (261)
Q Consensus 204 -~~~~~L~~L~l~~~~~~~~~~ 224 (261)
..+++|++|++++|.+++..+
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcCCCCCEEEeeCCCccCcCC
Confidence 789999999999999988653
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=184.41 Aligned_cols=239 Identities=17% Similarity=0.196 Sum_probs=169.2
Q ss_pred CccccCccccceeecCCCCCC-CCcccccCcccccEEEecCCCce-ecccc--cCCCCCCcEEeCCCCccccc--chHhh
Q 042184 2 NTSIANFKLMKVLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVK-IIPKS--IGNLLGLESLDLKNTLVREL--PVEIR 75 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~-~~~~~--l~~l~~L~~L~l~~~~~~~~--~~~~~ 75 (261)
|.+|.++++|++|++++|.+. ..|..++++++|++|++++|.++ .+|.. +..+++|++|++++|.+..+ +..++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 567899999999999999998 55788899999999999999987 45554 78899999999999988743 45788
Q ss_pred ccccccceeccceecccCchhhhhhh----------------hhcCCcccCCCC------CCeEecccc--chHHHHHHh
Q 042184 76 NLKKLRYLMVYQYYFTSGSSIAEEAA----------------AKLHPGFGSLTN------LQKLCIIEA--DSEVLKELM 131 (261)
Q Consensus 76 ~l~~L~~L~l~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~------L~~L~l~~~--~~~~~~~l~ 131 (261)
++++|++|++++|.+++....+-... ...+..+..+++ |+.|++++| ....+..+.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 99999999999988765211100000 011223333333 788888776 222222211
Q ss_pred c--------------------------------------cccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccccc
Q 042184 132 K--------------------------------------LRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEE 173 (261)
Q Consensus 132 ~--------------------------------------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 173 (261)
. .++|+.|++++ +......+..+..+++|++|++++|.+.+
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT-CCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC-CcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 1 25677777766 33333445567778888888888887765
Q ss_pred ccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 174 VLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
..+ ..+..++ +|++|++++ .++.+ +..+..+++|+.|++++|.+.+..+..+..+++|+.|+++ |.++
T Consensus 305 ~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 305 IAD-EAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp ECT-TTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCh-HHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 544 4577777 888888888 77754 5567778888888888888877666667778888888888 7765
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.7e-22 Score=176.62 Aligned_cols=121 Identities=21% Similarity=0.240 Sum_probs=97.2
Q ss_pred cccceeecCCCCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184 9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY 86 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 86 (261)
+++++|++++|.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 78999999999999665 6889999999999999999854 67788999999999999999988776 89999999999
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccc--cEEEeec
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQL--RKLSIRP 143 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L--~~L~l~~ 143 (261)
+|++++ ...|..++.+++|+.|++++| ... .+..+++| +.|++++
T Consensus 130 ~N~l~~---------l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 130 FNDFDV---------LPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp SSCCSB---------CCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred CCCccc---------cCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 997753 134578889999999999988 221 23344444 6666655
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=7.6e-23 Score=178.31 Aligned_cols=154 Identities=23% Similarity=0.274 Sum_probs=84.5
Q ss_pred cccceeecCCCCCCC-CcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184 9 KLMKVLDLEDAPVVY-LPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 85 (261)
++|++|++++|.++. .+..+..+++|++|++++|.++.+ |..++.+++|++|++++|.+..++.. +..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 456666666666663 334556666666666666666533 34556666666666666666644433 566666666666
Q ss_pred cceecccCchhhhhhhhhcCCcccCCCCCCeEec-------------------------ccc--chHHHHHHhccccccE
Q 042184 86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCI-------------------------IEA--DSEVLKELMKLRQLRK 138 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l-------------------------~~~--~~~~~~~l~~~~~L~~ 138 (261)
++|.+++. ..+..++.+++|+.|++ ++| ....+..++.+++|++
T Consensus 106 s~n~l~~~---------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 106 MGNPYQTL---------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TTCCCSSS---------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCccccc---------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 66655320 22334444444555544 444 2223344444555555
Q ss_pred EEeeccCCCccchHHH-HhCCCCCceEEEeeccccc
Q 042184 139 LSIRPQNGNGKDLCVL-IANLENLENLIVLMKSKEE 173 (261)
Q Consensus 139 L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~ 173 (261)
|++.+ ......+.. +..+++|++|++++|.+.+
T Consensus 177 L~l~~--n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 177 LTLHL--SESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEC--SBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred Eeccc--CcccccchhhHhhcccccEEEccCCcccc
Confidence 55544 111223333 3467889999998887654
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.8e-22 Score=171.46 Aligned_cols=216 Identities=23% Similarity=0.333 Sum_probs=173.4
Q ss_pred cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
.+.++++|++|++++|.+..++ .+..+++|+.|++++|.++.++. ++.+++|++|++++|.+..++ .+..+++|++|
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L 248 (466)
T 1o6v_A 172 PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDL 248 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEE
Confidence 3677888999999998888664 37788899999999988885544 677889999999999888664 57788999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE 162 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 162 (261)
++++|.+++ .+. +..+++|+.|++++| ....+. +..+++|+.|+++++ ... ..+. +..+++|+
T Consensus 249 ~l~~n~l~~-----------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~-~~~~-~~~l~~L~ 312 (466)
T 1o6v_A 249 DLANNQISN-----------LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLE-DISP-ISNLKNLT 312 (466)
T ss_dssp ECCSSCCCC-----------CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCS-CCGG-GGGCTTCS
T ss_pred ECCCCcccc-----------chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-ccc-Cchh-hcCCCCCC
Confidence 999997753 222 788899999999998 322332 788999999999882 222 2322 78899999
Q ss_pred eEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184 163 NLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G 240 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n 240 (261)
+|++++|.+.+..+ +..++ +|++|++++ .++.++ .+..+++|+.|++++|.+++..+ +..+++|+.|+++ |
T Consensus 313 ~L~L~~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 313 YLTLYFNNISDISP---VSSLT-KLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCCSCCGG---GGGCT-TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred EEECcCCcCCCchh---hccCc-cCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 99999998876654 56788 999999999 888774 57889999999999999998765 8899999999999 8
Q ss_pred cccce
Q 042184 241 TYNYE 245 (261)
Q Consensus 241 ~~~~~ 245 (261)
.+++.
T Consensus 386 ~~~~~ 390 (466)
T 1o6v_A 386 AWTNA 390 (466)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 88763
No 51
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=4.5e-24 Score=178.36 Aligned_cols=237 Identities=17% Similarity=0.154 Sum_probs=179.1
Q ss_pred CccccCccccceeecCCCCCC-C----CcccccCcccccEEEecCCCce----eccccc-------CCCCCCcEEeCCCC
Q 042184 2 NTSIANFKLMKVLDLEDAPVV-Y----LPEGVGSLLNLHYLSLRNKKVK----IIPKSI-------GNLLGLESLDLKNT 65 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~-~----~~~~~~~l~~L~~L~l~~~~i~----~~~~~l-------~~l~~L~~L~l~~~ 65 (261)
+..+..+++|++|++++|.+. . ++..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 456778899999999999888 3 3445778999999999987543 445443 68899999999999
Q ss_pred cccc-----cchHhhccccccceeccceecccCchhhhhhhhhcCCcccCC---------CCCCeEecccc--c-hHHH-
Q 042184 66 LVRE-----LPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL---------TNLQKLCIIEA--D-SEVL- 127 (261)
Q Consensus 66 ~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~L~~L~l~~~--~-~~~~- 127 (261)
.+.. ++..+..+++|++|++++|.++.. ....++..+..+ ++|+.|++++| . ...+
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~------~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ------AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH------HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH------HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 9884 667788999999999999987531 122344444444 89999999999 2 3444
Q ss_pred --HHHhccccccEEEeeccCCCccc---hHH-HHhCCCCCceEEEeecccc----cccccccccCCccccceEEEec-cC
Q 042184 128 --KELMKLRQLRKLSIRPQNGNGKD---LCV-LIANLENLENLIVLMKSKE----EVLDLQSLSNPPQYLQRLYFKG-DM 196 (261)
Q Consensus 128 --~~l~~~~~L~~L~l~~~~~~~~~---~~~-~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~~~L~~L~l~~-~l 196 (261)
..+..+++|+.|+++++...... +.. .+..+++|++|++++|.+. ...+ ..+..++ +|++|++++ .+
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~-~L~~L~L~~n~i 256 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWP-NLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCT-TCCEEECTTCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCC-CcCEEECCCCCC
Confidence 56778899999999883322212 333 7778999999999999875 2233 3467788 999999998 77
Q ss_pred cC-----CCcccc--CCCcccEEEeccCCCCC----ChhHHh-ccCCcccceEec-cccccee
Q 042184 197 KK-----LPDWIF--KPKNVIRLGLDLSGLTE----DPIRVL-HALPNLLQLRLA-GTYNYEL 246 (261)
Q Consensus 197 ~~-----l~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~-n~~~~~~ 246 (261)
+. ++..+. .+++|++|++++|.+++ .++..+ .++++|++|+++ |.+++..
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 63 456663 48999999999999987 366666 568999999999 9887554
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=3.3e-22 Score=170.33 Aligned_cols=188 Identities=17% Similarity=0.161 Sum_probs=145.1
Q ss_pred cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
.+..+++|++|++++|.++.++ ++.+++|++|++++|.++.++ ++.+++|++|++++|.++.++ +..+++|++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 5788999999999999999775 788999999999999998775 788999999999999988775 7889999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL 161 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 161 (261)
++++|++++ + .++.+++|+.|++++| .... .+..+++|+.|+++++ . ...++ +..+++|
T Consensus 133 ~l~~N~l~~-----------l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~-l~~l~--l~~l~~L 193 (457)
T 3bz5_A 133 NCARNTLTE-----------I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-K-ITELD--VSQNKLL 193 (457)
T ss_dssp ECTTSCCSC-----------C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-C-CCCCC--CTTCTTC
T ss_pred ECCCCccce-----------e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-c-cceec--cccCCCC
Confidence 999998763 2 2667788888888877 2222 3566778888888772 2 22233 6677778
Q ss_pred ceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCCh
Q 042184 162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDP 223 (261)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~ 223 (261)
++|++++|.+.+. + +..++ +|++|++++ .++.+| +..+++|+.|++++|.+++..
T Consensus 194 ~~L~l~~N~l~~~-~---l~~l~-~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 194 NRLNCDTNNITKL-D---LNQNI-QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CEEECCSSCCSCC-C---CTTCT-TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CEEECcCCcCCee-c---cccCC-CCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 8888888776643 2 55667 788888877 777766 666777888888877777643
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=8.2e-23 Score=178.12 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=93.3
Q ss_pred CccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccc--ccchHhhcc
Q 042184 2 NTSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVR--ELPVEIRNL 77 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~--~~~~~~~~l 77 (261)
|..|.++++|++|++++|.+..+ +..++.+++|++|++++|.++.++. .++.+++|++|++++|.+. ..+..+..+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 45567777777777777777733 3566777777777777777774443 3677777777777777766 334456666
Q ss_pred ccccceeccceecccC--------------chhhhhhh-hhcCCcccCCCCCCeEecccc-chHHHHH-HhccccccEEE
Q 042184 78 KKLRYLMVYQYYFTSG--------------SSIAEEAA-AKLHPGFGSLTNLQKLCIIEA-DSEVLKE-LMKLRQLRKLS 140 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~--------------~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~-~~~~~~~-l~~~~~L~~L~ 140 (261)
++|++|++++|.+.+. +.+..+.+ ...+..+..+++|+.|+++.+ ....+.. +..+++|+.|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 6666666666652211 01111111 135677888999999999998 4445544 45689999999
Q ss_pred eec
Q 042184 141 IRP 143 (261)
Q Consensus 141 l~~ 143 (261)
+++
T Consensus 203 L~~ 205 (549)
T 2z81_A 203 LRD 205 (549)
T ss_dssp EES
T ss_pred ccC
Confidence 987
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=171.07 Aligned_cols=217 Identities=20% Similarity=0.247 Sum_probs=180.4
Q ss_pred cceeecCCCCCCCCcccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccce
Q 042184 11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQY 88 (261)
Q Consensus 11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~ 88 (261)
.+.++..+.++..+|..+. ++++.|++++|.++.++ ..+..+++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 5678888888888887665 78999999999999544 67899999999999999999554 67889999999999999
Q ss_pred ecccCchhhhhhhhhcC-CcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEE
Q 042184 89 YFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI 165 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 165 (261)
+++ .++ ..+..+++|+.|++++| .......+..+++|+.|++.+++......+..+..+++|++|+
T Consensus 123 ~l~-----------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 123 RLT-----------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CCS-----------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred cCC-----------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 775 344 46889999999999999 3333446788999999999874444433445688899999999
Q ss_pred EeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccc
Q 042184 166 VLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTY 242 (261)
Q Consensus 166 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~ 242 (261)
+++|.+.... .+..++ +|++|++++ .++.+ +..+..+++|+.|++++|.+++..+..+.++++|+.|+++ |.+
T Consensus 192 L~~n~l~~~~---~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 192 LAMCNLREIP---NLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CTTSCCSSCC---CCTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CCCCcCcccc---ccCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 9999887442 477888 999999999 88855 5678889999999999999998777888999999999999 887
Q ss_pred cc
Q 042184 243 NY 244 (261)
Q Consensus 243 ~~ 244 (261)
+.
T Consensus 268 ~~ 269 (440)
T 3zyj_A 268 TL 269 (440)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=3.6e-22 Score=178.31 Aligned_cols=237 Identities=21% Similarity=0.233 Sum_probs=136.1
Q ss_pred cccCccccceeecCCCCCCCC-cccccCcccccEEEecCC----------------------------Cce-ecccccCC
Q 042184 4 SIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNK----------------------------KVK-IIPKSIGN 53 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~----------------------------~i~-~~~~~l~~ 53 (261)
.|..+++|++|++++|.+..+ +..+..+++|++|++++| .++ ..|..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 455566666666666666633 234455555555555443 333 22344555
Q ss_pred CCCCcEEeCCCCccc-ccc-hHhhccccccceeccceecccCc-------------hhhhh---hhhhcCCcccCCCCCC
Q 042184 54 LLGLESLDLKNTLVR-ELP-VEIRNLKKLRYLMVYQYYFTSGS-------------SIAEE---AAAKLHPGFGSLTNLQ 115 (261)
Q Consensus 54 l~~L~~L~l~~~~~~-~~~-~~~~~l~~L~~L~l~~~~~~~~~-------------~~~~~---~~~~l~~~~~~~~~L~ 115 (261)
+++|++|++++|.+. .++ ..+..+++|++|++++|++++.. .+... .....|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 666666666666655 333 44555666666666666543210 00000 1123455566666777
Q ss_pred eEecccc--chHHHHHHhccccccEEEeeccCCCccc--------hHHHHhCCCCCceEEEeecccccccccccccCCcc
Q 042184 116 KLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKD--------LCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ 185 (261)
Q Consensus 116 ~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~--------~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 185 (261)
.|++++| ....+..+..+++|+.|+++++ ..... ....+..+++|++|++++|.+.. .+...+..++
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~- 560 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLF- 560 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT-
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCC-CCHHHccccc-
Confidence 7777666 3223334566677777777661 11111 01125566777777777776653 3324466677
Q ss_pred ccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhc-cCCcccceEec-cccc
Q 042184 186 YLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLH-ALPNLLQLRLA-GTYN 243 (261)
Q Consensus 186 ~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~-n~~~ 243 (261)
+|+.|++++ .++.+|.. +..+++|+.|++++|.+++..+..+. .+++|+.++++ |++.
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 777777777 77766654 35677788888888877776666665 67788888888 7664
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=6.6e-23 Score=187.04 Aligned_cols=230 Identities=21% Similarity=0.222 Sum_probs=169.2
Q ss_pred CccccCccccceeecCCCCCC-CC-cccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc-ccchH--hh
Q 042184 2 NTSIANFKLMKVLDLEDAPVV-YL-PEGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR-ELPVE--IR 75 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~-~~-~~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~-~~~~~--~~ 75 (261)
+..|.++++|++|++++|... .+ |..+.++++|++|++++|.++ ..|..+.++++|++|++++|.+. ..+.. +.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 567899999999999999554 55 678999999999999999998 55888999999999999999988 35554 88
Q ss_pred ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhcc--cc----------------
Q 042184 76 NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKL--RQ---------------- 135 (261)
Q Consensus 76 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~--~~---------------- 135 (261)
.+++|++|++++|.+++ ...+..++.+++|+.|++++| ....+..+..+ ++
T Consensus 121 ~L~~L~~L~Ls~N~l~~---------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRS---------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp SCSSCCEEEEESCCCCC---------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred ccCCCCEEECCCCcccc---------cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 99999999999998763 123457899999999999998 22222222222 34
Q ss_pred --------------ccEEEeeccCCCccchHHH------------------------------------HhC--CCCCce
Q 042184 136 --------------LRKLSIRPQNGNGKDLCVL------------------------------------IAN--LENLEN 163 (261)
Q Consensus 136 --------------L~~L~l~~~~~~~~~~~~~------------------------------------l~~--~~~L~~ 163 (261)
|+.|+++++ ......+.. +.. .++|++
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~ 270 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred cchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence 445555441 111111111 111 256777
Q ss_pred EEEeecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-c
Q 042184 164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-G 240 (261)
Q Consensus 164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n 240 (261)
|++++|.+.+..+ ..+..++ +|+.|++++ .++.+ +..+..+++|++|++++|.+++..+..+..+++|+.|+++ |
T Consensus 271 L~Ls~n~l~~~~~-~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 271 LDLSHGFVFSLNS-RVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp EECTTCCCCEECS-CCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred EECCCCcccccCh-hhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 7777776655433 4567777 888888888 77744 4567778889999999988887767778888899999998 7
Q ss_pred ccc
Q 042184 241 TYN 243 (261)
Q Consensus 241 ~~~ 243 (261)
.++
T Consensus 349 ~i~ 351 (844)
T 3j0a_A 349 HIA 351 (844)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=2.3e-22 Score=171.37 Aligned_cols=218 Identities=18% Similarity=0.213 Sum_probs=179.8
Q ss_pred cceeecCCCCCCCCcccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCccccc-chHhhccccccceeccce
Q 042184 11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQY 88 (261)
Q Consensus 11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~ 88 (261)
.+.++.++.++..+|..+. ++++.|++++|.++. .+..+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4678888888888887654 789999999999994 467789999999999999999955 467889999999999999
Q ss_pred ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184 89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV 166 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 166 (261)
.++. .-+..+..+++|+.|++++| ... ....+..+++|+.|++++++......+..+..+++|++|++
T Consensus 134 ~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 134 WLTV----------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCSB----------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cCCc----------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 7753 22345888999999999999 333 34468889999999998744444333456888999999999
Q ss_pred eecccccccccccccCCccccceEEEec-cCcCC-CccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 167 LMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 167 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
++|.+.+. ..+..++ +|+.|++++ .++.+ +..+..+++|+.|++++|.+++..+..+..+++|+.|+++ |.++
T Consensus 204 ~~n~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 204 GMCNIKDM---PNLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp TTSCCSSC---CCCTTCT-TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccccc---ccccccc-cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 99988754 2477788 999999999 88855 5678889999999999999998777888999999999999 8876
Q ss_pred c
Q 042184 244 Y 244 (261)
Q Consensus 244 ~ 244 (261)
.
T Consensus 280 ~ 280 (452)
T 3zyi_A 280 S 280 (452)
T ss_dssp C
T ss_pred c
Confidence 3
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2e-22 Score=161.95 Aligned_cols=202 Identities=16% Similarity=0.107 Sum_probs=170.5
Q ss_pred ccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR 81 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 81 (261)
..+.++++++++++++++++.+|..+. ++++.|++++|.++.+ +..+..+++|++|++++|.++.++.. ..+++|+
T Consensus 4 C~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp SEEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 457889999999999999998887664 7899999999999844 56789999999999999999976554 7899999
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCC
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLE 159 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 159 (261)
+|++++|.++ .+|..+..+++|+.|++++| ... .+..+..+++|+.|++++ +......+..+..++
T Consensus 81 ~L~Ls~N~l~-----------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 81 TLDLSHNQLQ-----------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTP 148 (290)
T ss_dssp EEECCSSCCS-----------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCT
T ss_pred EEECCCCcCC-----------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhccccc
Confidence 9999999664 67888899999999999999 333 345688899999999988 333333445577899
Q ss_pred CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184 160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~ 221 (261)
+|++|++++|.+....+ ..+..++ +|++|++++ .++.+|..+...++|+.+++++|.+..
T Consensus 149 ~L~~L~L~~N~l~~l~~-~~~~~l~-~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPA-GLLNGLE-NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TCCEEECTTSCCSCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCEEECCCCcCCccCH-HHhcCcC-CCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 99999999998875444 5577888 999999999 999999999999999999999998875
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=6.2e-23 Score=166.65 Aligned_cols=200 Identities=18% Similarity=0.123 Sum_probs=161.1
Q ss_pred CccccceeecCCCCCC-CCcccc--cCcccccEEEecCCCceecccccCCC-----CCCcEEeCCCCcccccc-hHhhcc
Q 042184 7 NFKLMKVLDLEDAPVV-YLPEGV--GSLLNLHYLSLRNKKVKIIPKSIGNL-----LGLESLDLKNTLVRELP-VEIRNL 77 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~-~~~~~~--~~l~~L~~L~l~~~~i~~~~~~l~~l-----~~L~~L~l~~~~~~~~~-~~~~~l 77 (261)
++++|++|++++|.+. .+|..+ ..+++|++|++++|.++.+|..++.+ ++|++|++++|.+..++ ..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6899999999999998 778766 88999999999999999668777666 99999999999999655 788899
Q ss_pred ccccceeccceecccCchhhhhhhhhcCCcc--cCCCCCCeEecccc-ch---HHH-HHHhccccccEEEeeccCCCccc
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF--GSLTNLQKLCIIEA-DS---EVL-KELMKLRQLRKLSIRPQNGNGKD 150 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~-~~---~~~-~~l~~~~~L~~L~l~~~~~~~~~ 150 (261)
++|++|++++|++++ ...++..+ ..+++|+.|++++| .. ..+ ..+..+++|+.|++++ +.....
T Consensus 173 ~~L~~L~Ls~N~l~~--------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~ 243 (312)
T 1wwl_A 173 PALSTLDLSDNPELG--------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-NSLRDA 243 (312)
T ss_dssp SSCCEEECCSCTTCH--------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT-SCCCSS
T ss_pred CCCCEEECCCCCcCc--------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC-CcCCcc
Confidence 999999999998753 22233334 78899999999999 22 333 3456789999999998 333322
Q ss_pred hH-HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184 151 LC-VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 151 ~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~ 221 (261)
.+ ..+..+++|++|++++|.+. ..+. .+. + +|++|++++ .++.+|. +..+++|++|++++|.+++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~--~-~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPK-GLP--A-KLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-SCCS-SCC--S-EEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred cchhhhhhcCCCCEEECCCCccC-hhhh-hcc--C-CceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 22 34556789999999999887 3342 232 5 999999999 9998877 8889999999999999886
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=8e-22 Score=176.05 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=137.8
Q ss_pred cccCccccceeecCCCCCC-CCc-ccccCcccccEEEecCCCce-ecccccCCCCCCcEEeCCCCccc---ccchHhhcc
Q 042184 4 SIANFKLMKVLDLEDAPVV-YLP-EGVGSLLNLHYLSLRNKKVK-IIPKSIGNLLGLESLDLKNTLVR---ELPVEIRNL 77 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~-~~~-~~~~~l~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l 77 (261)
+|..+++|++|++++|.+. .++ ..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. ..|..+..+
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 3444444555555554444 233 34444455555555555444 22233445555555555555543 345667778
Q ss_pred ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH---------HHHhccccccEEEeeccCCC
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL---------KELMKLRQLRKLSIRPQNGN 147 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~---------~~l~~~~~L~~L~l~~~~~~ 147 (261)
++|++|++++|++++ ..+..+..+++|+.|++++| ...+. ..+..+++|+.|++++ +..
T Consensus 480 ~~L~~L~Ls~N~l~~----------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l 548 (680)
T 1ziw_A 480 RNLTILDLSNNNIAN----------INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGF 548 (680)
T ss_dssp TTCCEEECCSSCCCC----------CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCC
T ss_pred CCCCEEECCCCCCCc----------CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC-CCC
Confidence 888888888886653 23345889999999999999 32221 1367889999999998 333
Q ss_pred ccchH-HHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCcc-cc-CCCcccEEEeccCCCCCC
Q 042184 148 GKDLC-VLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IF-KPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 148 ~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~-~~~~L~~L~l~~~~~~~~ 222 (261)
. .++ ..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++ .++.++.. +. .+++|+.|++++|.+...
T Consensus 549 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 549 D-EIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT-TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred C-CCCHHHcccccCcceeECCCCCCCcCCH-hHhCCCC-CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 3 444 458899999999999998875444 5577888 999999999 99977764 33 588999999999988753
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.5e-23 Score=170.69 Aligned_cols=214 Identities=14% Similarity=0.094 Sum_probs=175.2
Q ss_pred ccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRY 82 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 82 (261)
..|.++++|++|++++|.+...+. +..+++|++|++++|.++.++. .++|++|++++|.+..++.. .+++|++
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~ 124 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKN 124 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEE
T ss_pred HHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCE
Confidence 468899999999999999986554 8899999999999999987653 38999999999999865432 4788999
Q ss_pred eeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHH-hccccccEEEeeccCCCccchHHHHhCCC
Q 042184 83 LMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKEL-MKLRQLRKLSIRPQNGNGKDLCVLIANLE 159 (261)
Q Consensus 83 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 159 (261)
|++++|.+++ ..+..+..+++|+.|++++| ....+..+ ..+++|+.|+++++ . ...++ ....++
T Consensus 125 L~l~~N~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~-l~~~~-~~~~l~ 191 (317)
T 3o53_A 125 IYLANNKITM----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-F-IYDVK-GQVVFA 191 (317)
T ss_dssp EECCSSCCCS----------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-C-CCEEE-CCCCCT
T ss_pred EECCCCCCCC----------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-c-Ccccc-cccccc
Confidence 9999998764 23456778899999999999 33334444 47899999999882 2 22232 233588
Q ss_pred CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCC-CChhHHhccCCcccceE
Q 042184 160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLT-EDPIRVLHALPNLLQLR 237 (261)
Q Consensus 160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ 237 (261)
+|++|++++|.+.+..+ .+..++ +|+.|++++ .++.+|..+..+++|+.|++++|.+. +..+..+..+++|+.++
T Consensus 192 ~L~~L~Ls~N~l~~l~~--~~~~l~-~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 192 KLKTLDLSSNKLAFMGP--EFQSAA-GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp TCCEEECCSSCCCEECG--GGGGGT-TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred cCCEEECCCCcCCcchh--hhcccC-cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 99999999998875533 377788 999999999 99999998889999999999999998 66778888999999999
Q ss_pred ec
Q 042184 238 LA 239 (261)
Q Consensus 238 l~ 239 (261)
+.
T Consensus 269 l~ 270 (317)
T 3o53_A 269 KQ 270 (317)
T ss_dssp HH
T ss_pred CC
Confidence 88
No 62
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.4e-22 Score=166.13 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=156.1
Q ss_pred cccceeecCCCCCCCCcccccCcccccEEEecCCCce-e-cccccCCCCCCcEEeCCCCccc-ccchHhhccccccceec
Q 042184 9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVK-I-IPKSIGNLLGLESLDLKNTLVR-ELPVEIRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~-~-~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l 85 (261)
+++++++++++.+...+..+..+++|+.|++++|.++ . ++..+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 6788888888877755555667888888888888876 3 6777788888888888888877 56667778888888888
Q ss_pred cce-ecccCchhhhhhhhhcCCcccCCCCCCeEecccc---ch-HHHHHHhccc-cccEEEeeccC--CCccchHHHHhC
Q 042184 86 YQY-YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DS-EVLKELMKLR-QLRKLSIRPQN--GNGKDLCVLIAN 157 (261)
Q Consensus 86 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~-~~~~~l~~~~-~L~~L~l~~~~--~~~~~~~~~l~~ 157 (261)
++| .+++ ..++..+..+++|+.|++++| .. .++..+..++ +|++|+++++. .....++..+..
T Consensus 150 ~~~~~l~~---------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 150 SGCSGFSE---------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp TTCBSCCH---------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCCCH---------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 888 4532 235555677888888888877 22 2566778888 88888887732 222556677778
Q ss_pred CCCCceEEEeecc-cccccccccccCCccccceEEEec-c-Cc-CCCccccCCCcccEEEeccCCCCCChhHHhccCCcc
Q 042184 158 LENLENLIVLMKS-KEEVLDLQSLSNPPQYLQRLYFKG-D-MK-KLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNL 233 (261)
Q Consensus 158 ~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~L~~L~l~~-~-l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 233 (261)
+++|++|++++|. +.+... ..+..++ +|++|++++ . +. .....+..+++|+.|++++| +++.....+. .++
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~-~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l 295 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCF-QEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EAL 295 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGG-GGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHS
T ss_pred CCCCCEEeCCCCCcCCHHHH-HHHhCCC-CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhC
Confidence 8888888888887 333322 4566777 888888877 3 22 11124566888888888888 6654444433 235
Q ss_pred cceEec-cccccee
Q 042184 234 LQLRLA-GTYNYEL 246 (261)
Q Consensus 234 ~~L~l~-n~~~~~~ 246 (261)
+.|+++ |.+++..
T Consensus 296 ~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 296 PHLQINCSHFTTIA 309 (336)
T ss_dssp TTSEESCCCSCCTT
T ss_pred cceEEecccCcccc
Confidence 556677 7776544
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.4e-22 Score=161.30 Aligned_cols=193 Identities=22% Similarity=0.282 Sum_probs=145.4
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 84 (261)
+.++++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 345788888888888888766 47778888999998888887766 788888999999888888765 577888889999
Q ss_pred ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN 163 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 163 (261)
+++|.+++ ++ .+..+++|+.|++++| ....+. +..+++|+.|+++++ .. ..++. +..+++|++
T Consensus 114 l~~n~l~~-----------~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l-~~~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 114 LTSTQITD-----------VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QV-SDLTP-LANLSKLTT 177 (308)
T ss_dssp CTTSCCCC-----------CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CC-CCCGG-GTTCTTCCE
T ss_pred CCCCCCCC-----------ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cC-CCChh-hcCCCCCCE
Confidence 88887652 22 3778888888888888 222222 777888888888772 22 22333 777888888
Q ss_pred EEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCC
Q 042184 164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~ 221 (261)
|++++|.+.+..+ +..++ +|++|++++ .++.++. +..+++|+.|++++|.+++
T Consensus 178 L~l~~n~l~~~~~---l~~l~-~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 178 LKADDNKISDISP---LASLP-NLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECCSSCCCCCGG---GGGCT-TCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred EECCCCccCcChh---hcCCC-CCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 8888887765433 56677 888888888 7777664 6778888888888887765
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=7.4e-23 Score=175.75 Aligned_cols=215 Identities=13% Similarity=0.093 Sum_probs=177.3
Q ss_pred CccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184 2 NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR 81 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 81 (261)
|..|..+++|++|++++|.+...++ +..+++|++|++++|.++.+|. .++|++|++++|.+..++. ..+++|+
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~--~~l~~L~ 123 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC--SRGQGKK 123 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEE--CCCSSCE
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCc--cccCCCC
Confidence 4678999999999999999985554 8899999999999999987664 3899999999999986543 2468999
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHh-ccccccEEEeeccCCCccchHHHHhCC
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELM-KLRQLRKLSIRPQNGNGKDLCVLIANL 158 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~ 158 (261)
.|++++|.+++ ..+..++.+++|+.|++++| .+..+..+. .+++|+.|+++++ ... ..+ ....+
T Consensus 124 ~L~L~~N~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~-~~~-~~~~l 190 (487)
T 3oja_A 124 NIYLANNKITM----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIY-DVK-GQVVF 190 (487)
T ss_dssp EEECCSSCCCS----------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCC-EEE-CCCCC
T ss_pred EEECCCCCCCC----------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccc-ccc-ccccC
Confidence 99999998864 34567788999999999999 444555554 7899999999982 222 222 23468
Q ss_pred CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCC-CChhHHhccCCcccce
Q 042184 159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLT-EDPIRVLHALPNLLQL 236 (261)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L 236 (261)
++|++|++++|.+.+..+ .+..++ +|+.|++++ .++.+|..+..+++|+.|++++|.+. +.++..+..+++|+.+
T Consensus 191 ~~L~~L~Ls~N~l~~~~~--~~~~l~-~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFMGP--EFQSAA-GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp TTCCEEECCSSCCCEECG--GGGGGT-TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred CCCCEEECCCCCCCCCCH--hHcCCC-CccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 899999999999886544 377888 999999999 99999998989999999999999998 5566778889998888
Q ss_pred Eec
Q 042184 237 RLA 239 (261)
Q Consensus 237 ~l~ 239 (261)
++.
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 874
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.9e-21 Score=155.10 Aligned_cols=219 Identities=19% Similarity=0.217 Sum_probs=174.8
Q ss_pred eeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccceec
Q 042184 13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQYYF 90 (261)
Q Consensus 13 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 90 (261)
+++..+.++..+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45566667777887654 679999999999996654 7889999999999999998655 4688899999999999977
Q ss_pred ccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEee
Q 042184 91 TSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLM 168 (261)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 168 (261)
++ ..+..+..+++|+.|++++| ... ....+..+++|+.|+++++......+|..+..+++|++|++++
T Consensus 89 ~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 89 QS----------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp CE----------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred Cc----------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence 53 23467889999999999998 222 2234788999999999983322224678899999999999999
Q ss_pred cccccccccccccCCccccc----eEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccc
Q 042184 169 KSKEEVLDLQSLSNPPQYLQ----RLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTY 242 (261)
Q Consensus 169 n~~~~~~~~~~~~~~~~~L~----~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~ 242 (261)
|.+.+..+ ..+..++ +++ .|++++ .++.++.......+|++|++++|.+++.....+..+++|+.|+++ |++
T Consensus 159 N~l~~~~~-~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 159 NKIQSIYC-TDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SCCCEECG-GGGHHHH-TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCCcCCH-HHhhhhh-hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 98876543 3455555 566 889998 888887776667799999999999998777778899999999999 988
Q ss_pred cce
Q 042184 243 NYE 245 (261)
Q Consensus 243 ~~~ 245 (261)
+.+
T Consensus 237 ~c~ 239 (276)
T 2z62_A 237 DCS 239 (276)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=170.07 Aligned_cols=110 Identities=28% Similarity=0.313 Sum_probs=60.6
Q ss_pred cccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccch-Hhhccccc
Q 042184 4 SIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKL 80 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L 80 (261)
+|.++++|++|++++|.+..+ +..++++++|++|++++|.++.++ ..++.+++|++|++++|.+..++. .++.+++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 455556666666666655533 244555566666666666555333 445556666666666665554432 35555666
Q ss_pred cceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 81 RYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
++|++++|.+++ ..+|..++.+++|+.|++++|
T Consensus 127 ~~L~L~~n~l~~---------~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 127 KELNVAHNLIQS---------FKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CEEECCSSCCCC---------CCCCGGGGGCTTCCEEECTTS
T ss_pred cEEecCCCccce---------ecChhhhcccCCCCEEeCcCC
Confidence 666666654431 134555666666666666665
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.9e-21 Score=157.54 Aligned_cols=210 Identities=19% Similarity=0.224 Sum_probs=169.4
Q ss_pred eeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceeccc
Q 042184 13 VLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTS 92 (261)
Q Consensus 13 ~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 92 (261)
.+.+..+.+.... ....+++|+.|+++++.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+++
T Consensus 23 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 23 KIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HHHhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 3344555554322 2456899999999999999876 57889999999999999998776 8999999999999998753
Q ss_pred CchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccc
Q 042184 93 GSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSK 171 (261)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 171 (261)
+ +.+..+++|+.|++++| ....+ .+..+++|+.|+++++ .. ..++. +..+++|++|++++|.+
T Consensus 100 -----------~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-~l-~~~~~-l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 100 -----------V-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLN-QI-TNISP-LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp -----------C-GGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSS-CC-CCCGG-GGGCTTCCEEECCSSCC
T ss_pred -----------c-hhhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCC-cc-CcCcc-ccCCCCccEEEccCCcC
Confidence 2 36888999999999999 33333 3889999999999882 22 23332 88899999999999988
Q ss_pred ccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccceeeE
Q 042184 172 EEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYELFH 248 (261)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~~~~ 248 (261)
.+..+ +..++ +|+.|++++ .++.++. +..+++|++|++++|.+++.. .+..+++|+.|+++ |.++.....
T Consensus 164 ~~~~~---l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 164 SDLTP---LANLS-KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CCCGG---GTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CCChh---hcCCC-CCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCee
Confidence 75433 77888 999999999 8988776 778999999999999999765 37899999999999 988764443
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=4.7e-21 Score=152.40 Aligned_cols=197 Identities=19% Similarity=0.216 Sum_probs=149.3
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccchH-hhccccccceeccc
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQ 87 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 87 (261)
..++++++++.++.+|..+. ++++.|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 47889999999998887654 689999999999986664 688999999999999999877654 47799999999999
Q ss_pred eecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEE
Q 042184 88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI 165 (261)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 165 (261)
|.+++ .-+..+..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|++|+
T Consensus 95 n~l~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 95 NKLQA----------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp SCCCC----------CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCc----------CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeE
Confidence 97653 12345678899999999888 333344567788888888887 233333333467788888888
Q ss_pred EeecccccccccccccCCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCC
Q 042184 166 VLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 166 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~ 221 (261)
+++|.+.+..+ ..+..++ +|++|++++ .++.++.. +..+++|+.|++++|.+..
T Consensus 164 L~~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 164 LYNNQLKRVPE-GAFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCSCCCT-TTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ecCCcCcEeCh-hHhccCC-CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 88887765433 4466777 888888888 78776654 5567888888888887654
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.2e-22 Score=162.70 Aligned_cols=223 Identities=17% Similarity=0.176 Sum_probs=176.3
Q ss_pred ccceeecCCCCCCCCcccccCc--ccccEEEecCCCceecccccCCCCCCcEEeCCCCccc-c-cchHhhccccccceec
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSL--LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVR-E-LPVEIRNLKKLRYLMV 85 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~-~-~~~~~~~l~~L~~L~l 85 (261)
.++.++++++.+. +..+..+ ++++.+++++|.+...+..+..+++|++|++++|.+. . ++..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4788999988776 3445555 8899999999998855555778999999999999987 3 7788899999999999
Q ss_pred cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc---ch-HHHHHHhccccccEEEeecc-CCCccchHHHHhCCC-
Q 042184 86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DS-EVLKELMKLRQLRKLSIRPQ-NGNGKDLCVLIANLE- 159 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~-~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~- 159 (261)
++|.+++ ..+..++.+++|+.|++++| .. .++..+..+++|+.|+++++ ......++..+..++
T Consensus 126 ~~~~l~~----------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 126 EGLRLSD----------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp TTCBCCH----------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred cCcccCH----------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 9998753 45566778999999999998 33 46777999999999999984 333334678889999
Q ss_pred CCceEEEeecc--cc-cccccccccCCccccceEEEec-c-Cc-CCCccccCCCcccEEEeccC-CCCCChhHHhccCCc
Q 042184 160 NLENLIVLMKS--KE-EVLDLQSLSNPPQYLQRLYFKG-D-MK-KLPDWIFKPKNVIRLGLDLS-GLTEDPIRVLHALPN 232 (261)
Q Consensus 160 ~L~~L~l~~n~--~~-~~~~~~~~~~~~~~L~~L~l~~-~-l~-~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 232 (261)
+|++|++++|. +. +..+ ..+..++ +|++|++++ . ++ ..+..+..+++|++|++++| .+++.....+.++++
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~-~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLS-TLVRRCP-NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHH-HHHHHCT-TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEEeCCCcccCCHHHHH-HHHhhCC-CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 99999999994 33 1222 2356788 999999999 6 65 55667888999999999999 455555557888999
Q ss_pred ccceEeccccccee
Q 042184 233 LLQLRLAGTYNYEL 246 (261)
Q Consensus 233 L~~L~l~n~~~~~~ 246 (261)
|+.|+++++++.+.
T Consensus 274 L~~L~l~~~i~~~~ 287 (336)
T 2ast_B 274 LKTLQVFGIVPDGT 287 (336)
T ss_dssp CCEEECTTSSCTTC
T ss_pred CCEEeccCccCHHH
Confidence 99999993365443
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=4.7e-22 Score=158.39 Aligned_cols=214 Identities=18% Similarity=0.170 Sum_probs=134.3
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 89 (261)
++..+++..+.+... .....+++|+.|+++++.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC
T ss_pred HHHHHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc
Confidence 344445555544422 12345566777777776666543 3556677777777777666543 46666777777777765
Q ss_pred cccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEe
Q 042184 90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVL 167 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 167 (261)
+++ ..+..+..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|++|+++
T Consensus 97 l~~----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 97 LQS----------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp CCC----------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCc----------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECC
Confidence 542 12233566667777777766 222333456677777777766 23333333446677888888888
Q ss_pred ecccccccccccccCCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-ccccc
Q 042184 168 MKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 168 ~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~ 244 (261)
+|.+.+..+ ..+..++ +|++|++++ .++.++.. +..+++|+.|++++|.+.+ .+++|+.++++ |.+++
T Consensus 166 ~n~l~~~~~-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 166 YNQLQSLPE-GVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp SSCCCCCCT-TTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred CCCcCccCH-HHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 887765433 4466777 888888888 77765543 5678888888888887664 35677777777 76665
Q ss_pred ee
Q 042184 245 EL 246 (261)
Q Consensus 245 ~~ 246 (261)
..
T Consensus 237 ~i 238 (272)
T 3rfs_A 237 VV 238 (272)
T ss_dssp GB
T ss_pred cc
Confidence 44
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=157.22 Aligned_cols=219 Identities=19% Similarity=0.164 Sum_probs=164.7
Q ss_pred ccceeecCCCCCC--CCcc--cccCcccccEEEecCCCce-eccccc--CCCCCCcEEeCCCCcccc-cc----hHhhcc
Q 042184 10 LMKVLDLEDAPVV--YLPE--GVGSLLNLHYLSLRNKKVK-IIPKSI--GNLLGLESLDLKNTLVRE-LP----VEIRNL 77 (261)
Q Consensus 10 ~L~~L~l~~~~l~--~~~~--~~~~l~~L~~L~l~~~~i~-~~~~~l--~~l~~L~~L~l~~~~~~~-~~----~~~~~l 77 (261)
.++.+.+.++.+. .+.. ....+++|++|++++|.++ ..|..+ ..+++|++|++++|.+.. .+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3566777776665 2221 1223467999999999988 666666 889999999999999883 22 334578
Q ss_pred ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chH--HHHH--HhccccccEEEeeccCCCccch
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSE--VLKE--LMKLRQLRKLSIRPQNGNGKDL 151 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~--~~~~--l~~~~~L~~L~l~~~~~~~~~~ 151 (261)
++|++|++++|.+++ ..+..++.+++|+.|++++| ... .+.. +..+++|++|+++++ .. ..+
T Consensus 145 ~~L~~L~Ls~n~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l-~~l 212 (310)
T 4glp_A 145 PGLKVLSIAQAHSPA----------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GM-ETP 212 (310)
T ss_dssp SCCCEEEEECCSSCC----------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CC-CCH
T ss_pred cCCCEEEeeCCCcch----------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CC-Cch
Confidence 999999999997753 34567889999999999999 221 2222 367899999999983 22 223
Q ss_pred HH----HHhCCCCCceEEEeecccccccc--cccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChh
Q 042184 152 CV----LIANLENLENLIVLMKSKEEVLD--LQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPI 224 (261)
Q Consensus 152 ~~----~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 224 (261)
+. .+..+++|++|++++|.+.+..+ +..+..++ +|++|++++ .++.+|..+. ++|+.|++++|.+++..
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~- 288 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS-ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAP- 288 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT-TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCC-
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC-cCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCc-
Confidence 32 35788999999999999887644 22233336 999999999 9999988764 89999999999999742
Q ss_pred HHhccCCcccceEec-ccccce
Q 042184 225 RVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 225 ~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
....+++|+.|+++ |.++++
T Consensus 289 -~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 289 -QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp -CTTSCCCCSCEECSSTTTSCC
T ss_pred -hhhhCCCccEEECcCCCCCCC
Confidence 25789999999999 998754
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.6e-21 Score=151.98 Aligned_cols=196 Identities=22% Similarity=0.280 Sum_probs=161.3
Q ss_pred ccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccch-HhhccccccceeccceecccCchhhhhhhhhcCC-ccc
Q 042184 32 LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHP-GFG 109 (261)
Q Consensus 32 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~ 109 (261)
...+.++++++.++.+|..+. +++++|++++|.+..++. .+..+++|++|++++|.++ .++. .+.
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~i~~~~~~ 82 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-----------TLPAGIFK 82 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-----------CCCTTTTS
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-----------eeChhhhc
Confidence 357899999999998887654 789999999999996654 6889999999999999765 3444 457
Q ss_pred CCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcccc
Q 042184 110 SLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYL 187 (261)
Q Consensus 110 ~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L 187 (261)
.+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++ +|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L 159 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLT-SL 159 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT-TC
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCc-cc
Confidence 8999999999999 333344578899999999988 33444445567899999999999998875543 4577888 99
Q ss_pred ceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 188 QRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 188 ~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
++|++++ .++.++.. +..+++|++|++++|.+++.....+..+++|+.|+++ |++.
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 9999999 89977764 6779999999999999998777778899999999999 8874
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.4e-21 Score=155.72 Aligned_cols=207 Identities=18% Similarity=0.184 Sum_probs=164.9
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccch-Hhhccccccce
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYL 83 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 83 (261)
+..+++|++|+++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 456788999999999988665 4778999999999999988764 67899999999999999996654 46889999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL 161 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 161 (261)
++++|++++ ..+..+..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|
T Consensus 115 ~L~~n~l~~----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 115 VLVENQLQS----------LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp ECTTSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred ECCCCcCCc----------cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccC
Confidence 999997753 23345788999999999999 333344568899999999998 33344444557889999
Q ss_pred ceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCc
Q 042184 162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPN 232 (261)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 232 (261)
++|++++|.+.+..+ ..+..++ +|+.|++++ .+. +.++.|+.+++..|.+++.++..++.++.
T Consensus 184 ~~L~L~~N~l~~~~~-~~~~~l~-~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPD-GVFDRLT-SLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CEEECCSSCCSCCCT-TTTTTCT-TCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CEEECCCCcCCccCH-HHHhCCc-CCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 999999998886555 5577888 999999988 554 44778999999999988877776665544
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.6e-20 Score=164.89 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=60.2
Q ss_pred CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceE
Q 042184 159 ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLR 237 (261)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 237 (261)
++|++|++++|.+.+. + ..++ +|+.|++++ .++.+|. .+++|+.|++++|.++ .++..+.++++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~~l-p----~~l~-~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLTSL-P----VLPS-ELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCSCC-C----CCCT-TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCCccCcC-C----CCCC-cCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 5677777777766542 2 2345 888899988 8888876 5688999999999988 5567789999999999
Q ss_pred ec-ccccce
Q 042184 238 LA-GTYNYE 245 (261)
Q Consensus 238 l~-n~~~~~ 245 (261)
++ |.+++.
T Consensus 291 L~~N~l~~~ 299 (622)
T 3g06_A 291 LEGNPLSER 299 (622)
T ss_dssp CCSCCCCHH
T ss_pred ecCCCCCCc
Confidence 99 888654
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=1.2e-20 Score=151.61 Aligned_cols=199 Identities=17% Similarity=0.124 Sum_probs=164.8
Q ss_pred cccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCccccc-chHhhccccccceeccceecccCchhhhhhhhhcC
Q 042184 27 GVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH 105 (261)
Q Consensus 27 ~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 105 (261)
.+..+++++.++++++.++.+|..+. +++++|++++|.+..+ +..+..+++|++|++++|.++ .++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~ 71 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----------KLQ 71 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----------EEE
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-----------ccc
Confidence 35678899999999999999887664 7899999999999854 567899999999999999775 333
Q ss_pred CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184 106 PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP 184 (261)
Q Consensus 106 ~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 184 (261)
.. ..+++|+.|++++| ...++..+..+++|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++
T Consensus 72 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~ 148 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTP 148 (290)
T ss_dssp CC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCT
T ss_pred CC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhccccc
Confidence 33 78899999999999 555666678899999999998 33333334678899999999999998875544 5577888
Q ss_pred cccceEEEec-cCcCCCccc-cCCCcccEEEeccCCCCCChhHHhccCCcccceEec-cccc
Q 042184 185 QYLQRLYFKG-DMKKLPDWI-FKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYN 243 (261)
Q Consensus 185 ~~L~~L~l~~-~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~ 243 (261)
+|+.|++++ .++.+|... ..+++|+.|++++|.++. ++..+..+++|+.++++ |++.
T Consensus 149 -~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 149 -KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred -CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCcc
Confidence 999999999 999888754 569999999999999984 55667778899999999 8874
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.7e-21 Score=162.79 Aligned_cols=218 Identities=15% Similarity=0.118 Sum_probs=167.8
Q ss_pred CCCCcccccCcccccEEEecCCCce-e----cccccCCCCCCcEEeCCCCccc----ccchHh-------hcccccccee
Q 042184 21 VVYLPEGVGSLLNLHYLSLRNKKVK-I----IPKSIGNLLGLESLDLKNTLVR----ELPVEI-------RNLKKLRYLM 84 (261)
Q Consensus 21 l~~~~~~~~~l~~L~~L~l~~~~i~-~----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~-------~~l~~L~~L~ 84 (261)
+..++..+..+++|+.|++++|.++ . ++..+..+++|++|++++|.+. .+|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3356677788899999999999987 3 4445778999999999997544 344444 6889999999
Q ss_pred ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHHHhcc---------ccccEEEeeccCCCcc
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKELMKL---------RQLRKLSIRPQNGNGK 149 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~l~~~---------~~L~~L~l~~~~~~~~ 149 (261)
+++|.++.. ....++..+..+++|+.|++++| .. .++..+..+ ++|++|+++++.....
T Consensus 101 Ls~n~l~~~------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 101 LSDNAFGPT------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CCSCCCCTT------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred CCCCcCCHH------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 999988752 34457778889999999999999 22 233445555 8999999998433324
Q ss_pred chH---HHHhCCCCCceEEEeeccccccc---ccc-cccCCccccceEEEec-cC-----cCCCccccCCCcccEEEecc
Q 042184 150 DLC---VLIANLENLENLIVLMKSKEEVL---DLQ-SLSNPPQYLQRLYFKG-DM-----KKLPDWIFKPKNVIRLGLDL 216 (261)
Q Consensus 150 ~~~---~~l~~~~~L~~L~l~~n~~~~~~---~~~-~~~~~~~~L~~L~l~~-~l-----~~l~~~~~~~~~L~~L~l~~ 216 (261)
.++ ..+..+++|++|++++|.+.... -.. .+..++ +|++|++++ .+ ..++..+..+++|++|++++
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 444 57788999999999999876221 012 467788 999999999 87 46777788899999999999
Q ss_pred CCCCCC----hhHHhcc--CCcccceEec-ccccce
Q 042184 217 SGLTED----PIRVLHA--LPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 217 ~~~~~~----~~~~~~~--~~~L~~L~l~-n~~~~~ 245 (261)
|.+++. ++..+.. +++|+.|+++ |.++..
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 999875 3445533 9999999999 988764
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=5.5e-22 Score=169.30 Aligned_cols=209 Identities=17% Similarity=0.167 Sum_probs=99.3
Q ss_pred ccCccccceeecCCCCCCC-Ccccc-cCcc----cccEEEecCCCce-----ecccccCCCCCCcEEeCCCCccc-ccch
Q 042184 5 IANFKLMKVLDLEDAPVVY-LPEGV-GSLL----NLHYLSLRNKKVK-----IIPKSIGNLLGLESLDLKNTLVR-ELPV 72 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~-~~~~~-~~l~----~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~~~-~~~~ 72 (261)
+..+++|++|++++|.+.. .+..+ ..++ +|++|++++|.++ .++..+..+++|++|++++|.+. ..+.
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 4445566666666655541 11111 1222 4666666666554 23445555666666666666554 1111
Q ss_pred Hhh-----ccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHh-----ccccccEEE
Q 042184 73 EIR-----NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELM-----KLRQLRKLS 140 (261)
Q Consensus 73 ~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~-----~~~~L~~L~ 140 (261)
.+. ..++|++|++++|.++.. ....++..+..+++|+.|++++| ....+..+. ..++|+.|+
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAA------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGG------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHH------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 111 133466666666555431 22234445555666677776666 222222222 234666666
Q ss_pred eeccCCCcc---chHHHHhCCCCCceEEEeecccccccc----cccccCCccccceEEEec-cCcC-----CCccccCCC
Q 042184 141 IRPQNGNGK---DLCVLIANLENLENLIVLMKSKEEVLD----LQSLSNPPQYLQRLYFKG-DMKK-----LPDWIFKPK 207 (261)
Q Consensus 141 l~~~~~~~~---~~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~~L~~L~l~~-~l~~-----l~~~~~~~~ 207 (261)
++++..... .++..+..+++|++|++++|.+.+... ......++ +|++|++++ .++. ++..+..++
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC-CceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 665211111 245555566666666666665432110 00111244 566666655 4442 344444455
Q ss_pred cccEEEeccCCCC
Q 042184 208 NVIRLGLDLSGLT 220 (261)
Q Consensus 208 ~L~~L~l~~~~~~ 220 (261)
+|++|++++|.++
T Consensus 285 ~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 285 SLKELSLAGNELG 297 (461)
T ss_dssp TCCEEECTTCCCH
T ss_pred CcceEECCCCCCc
Confidence 5555555555444
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.6e-21 Score=161.58 Aligned_cols=235 Identities=11% Similarity=0.097 Sum_probs=162.7
Q ss_pred cccCccccceeecCCCCCCCCc-----ccccCcc-cccEEEecCCCce-ecccccCCC-----CCCcEEeCCCCccccc-
Q 042184 4 SIANFKLMKVLDLEDAPVVYLP-----EGVGSLL-NLHYLSLRNKKVK-IIPKSIGNL-----LGLESLDLKNTLVREL- 70 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~-----~~~~~l~-~L~~L~l~~~~i~-~~~~~l~~l-----~~L~~L~l~~~~~~~~- 70 (261)
.+...++|++|++++|.+...+ ..+..++ +|++|++++|.++ ..+..+..+ ++|++|++++|.++..
T Consensus 17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 3445566999999999988544 5667787 8999999999988 334444443 8999999999998833
Q ss_pred chH----hhcc-ccccceeccceecccCchhhhhhhhhcCCcccC-CCCCCeEecccc--c----hHHHHHHhccc-ccc
Q 042184 71 PVE----IRNL-KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGS-LTNLQKLCIIEA--D----SEVLKELMKLR-QLR 137 (261)
Q Consensus 71 ~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~--~----~~~~~~l~~~~-~L~ 137 (261)
+.. +..+ ++|++|++++|.+++. ....+...+.. .++|+.|++++| . ..++..+...+ +|+
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSK------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGS------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcH------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 332 4455 7899999999987652 23333344555 368999999998 2 24556667666 999
Q ss_pred EEEeeccCCCccc----hHHHHhCC-CCCceEEEeeccccccccc---ccccCCccccceEEEec-cCcCCC-----ccc
Q 042184 138 KLSIRPQNGNGKD----LCVLIANL-ENLENLIVLMKSKEEVLDL---QSLSNPPQYLQRLYFKG-DMKKLP-----DWI 203 (261)
Q Consensus 138 ~L~l~~~~~~~~~----~~~~l~~~-~~L~~L~l~~n~~~~~~~~---~~~~~~~~~L~~L~l~~-~l~~l~-----~~~ 203 (261)
.|+++++ ..... +...+..+ ++|++|++++|.+.+.... ..+...+++|++|++++ .++..+ ..+
T Consensus 171 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 171 SLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp EEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred EeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 9999882 33222 23455566 5999999999987652110 12333223899999998 777443 334
Q ss_pred cCCCcccEEEeccCCCCCChh-------HHhccCCcccceEec-ccccce
Q 042184 204 FKPKNVIRLGLDLSGLTEDPI-------RVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
..+++|+.|++++|.+.+... ..+..+++|+.|+++ |.+...
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 668899999999997443222 234567889999999 887654
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=9.5e-21 Score=153.64 Aligned_cols=201 Identities=19% Similarity=0.124 Sum_probs=156.6
Q ss_pred CccccceeecCCCCCC-CCcccc--cCcccccEEEecCCCcee-cc----cccCCCCCCcEEeCCCCccccc-chHhhcc
Q 042184 7 NFKLMKVLDLEDAPVV-YLPEGV--GSLLNLHYLSLRNKKVKI-IP----KSIGNLLGLESLDLKNTLVREL-PVEIRNL 77 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~-~~~~~~--~~l~~L~~L~l~~~~i~~-~~----~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l 77 (261)
.+++|++|++++|.+. ..|..+ ..+++|++|++++|.++. .+ ..+..+++|++|++++|.+..+ +..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3467999999999998 666766 889999999999999883 33 2345789999999999999855 4678899
Q ss_pred ccccceeccceecccCchhhhhhhhhc--CCcccCCCCCCeEecccc-c---hHHHH-HHhccccccEEEeeccCCCccc
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKL--HPGFGSLTNLQKLCIIEA-D---SEVLK-ELMKLRQLRKLSIRPQNGNGKD 150 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~~~~~L~~L~l~~~-~---~~~~~-~l~~~~~L~~L~l~~~~~~~~~ 150 (261)
++|++|++++|++.+ ...+ +..+..+++|+.|++++| . ...+. .+..+++|++|++++ +.....
T Consensus 169 ~~L~~L~Ls~N~l~~--------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~ 239 (310)
T 4glp_A 169 PALTSLDLSDNPGLG--------ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRAT 239 (310)
T ss_dssp TTCCEEECCSCTTCH--------HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCC
T ss_pred CCCCEEECCCCCCcc--------chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCcc
Confidence 999999999998653 2122 333468899999999999 3 22333 357889999999998 334434
Q ss_pred hHHHHhCC---CCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC
Q 042184 151 LCVLIANL---ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 151 ~~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 222 (261)
.|..+..+ ++|++|++++|.+... +. .+ .+ +|++|++++ .++.+|. +..+++|+.|++++|.+++.
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~-~~--~~-~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLEQV-PK-GL--PA-KLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCCSC-CS-CC--CS-CCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred chhhHHhccCcCcCCEEECCCCCCCch-hh-hh--cC-CCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCCC
Confidence 45556665 6999999999988743 42 22 25 999999999 9998866 67889999999999998763
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=4.3e-20 Score=163.25 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=47.1
Q ss_pred cccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccc--ccchHhhcccc
Q 042184 4 SIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVR--ELPVEIRNLKK 79 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~ 79 (261)
+|.++++|++|++++|.++.+| ..|.++++|++|++++|.++.++. .++.+++|++|++++|.+. ..|..+..+++
T Consensus 95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 174 (635)
T 4g8a_A 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence 3445555555555555555333 234455555555555555554433 2455566666666666554 34455566666
Q ss_pred ccceeccceecc
Q 042184 80 LRYLMVYQYYFT 91 (261)
Q Consensus 80 L~~L~l~~~~~~ 91 (261)
|++|++++|+++
T Consensus 175 L~~L~L~~N~l~ 186 (635)
T 4g8a_A 175 LEHLDLSSNKIQ 186 (635)
T ss_dssp CCEEECCSSCCC
T ss_pred hhhhcccCcccc
Confidence 777766666543
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=2.4e-20 Score=145.64 Aligned_cols=206 Identities=15% Similarity=0.151 Sum_probs=148.6
Q ss_pred eecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCc-ccccch-Hhhccccccceeccc-ee
Q 042184 14 LDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTL-VRELPV-EIRNLKKLRYLMVYQ-YY 89 (261)
Q Consensus 14 L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~-~~ 89 (261)
+++....++.+|. +. +++++|++++|.++.+|. .+..+++|++|++++|. ++.++. .+..+++|++|++++ |.
T Consensus 16 ~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 16 FRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred ceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 3333334667776 43 478889998888886665 57788889999998886 776654 577888899999987 75
Q ss_pred cccCchhhhhhhhhcC-CcccCCCCCCeEecccc-chHHHHHHhcccccc---EEEeeccCCCccchHHHHhCCCCCc-e
Q 042184 90 FTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLR---KLSIRPQNGNGKDLCVLIANLENLE-N 163 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~L~-~ 163 (261)
++ .++ ..+..+++|+.|++++| ...++. +..+++|+ .|+++++.......+..+..+++|+ +
T Consensus 93 l~-----------~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 93 LT-----------YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp CC-----------EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred ee-----------EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeE
Confidence 54 344 46778888899988888 333444 66777777 8888872133333344578889999 9
Q ss_pred EEEeecccccccccccccCCccccceEEEec-c-CcCCCc-cccCC-CcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-D-MKKLPD-WIFKP-KNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~-l~~l~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
+++++|.+. ..+...+.. + +|++|++++ . ++.++. .+..+ ++|+.|++++|.++..... .+++|+.|+++
T Consensus 161 L~l~~n~l~-~i~~~~~~~-~-~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 161 LKLYNNGFT-SVQGYAFNG-T-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp EECCSCCCC-EECTTTTTT-C-EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred EEcCCCCCc-ccCHhhcCC-C-CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 999999876 334344444 6 899999988 4 887754 46677 8999999999998864332 67888888887
Q ss_pred c
Q 042184 240 G 240 (261)
Q Consensus 240 n 240 (261)
+
T Consensus 235 ~ 235 (239)
T 2xwt_C 235 N 235 (239)
T ss_dssp T
T ss_pred C
Confidence 4
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=4.8e-21 Score=163.46 Aligned_cols=233 Identities=18% Similarity=0.174 Sum_probs=154.5
Q ss_pred ccCccccceeecCCCCCC-----CCcccccCcccccEEEecCCCcee-ccccc-CCCC----CCcEEeCCCCccc-----
Q 042184 5 IANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNKKVKI-IPKSI-GNLL----GLESLDLKNTLVR----- 68 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~i~~-~~~~l-~~l~----~L~~L~l~~~~~~----- 68 (261)
+..+++|++|++++|.+. .++..+..+++|++|++++|.++. .+..+ ..+. +|++|++++|.+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 556778888888888777 345566677888888888887762 22222 2333 6888888888776
Q ss_pred ccchHhhccccccceeccceecccCchhhhhhhhhcCCc-ccCCCCCCeEecccc--ch----HHHHHHhccccccEEEe
Q 042184 69 ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLCIIEA--DS----EVLKELMKLRQLRKLSI 141 (261)
Q Consensus 69 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~--~~----~~~~~l~~~~~L~~L~l 141 (261)
.++..+..+++|++|++++|.++.. ....+... ....++|+.|++++| .. .++..+..+++|++|++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~------~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDA------GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHH------HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHccCCceeEEECCCCcCchH------HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence 3456677788888888888876431 12222222 223457888888887 22 34566777788888888
Q ss_pred eccCCCccchHHHHh-----CCCCCceEEEeecccccccc---cccccCCccccceEEEec-cCcC-----CCcc-ccCC
Q 042184 142 RPQNGNGKDLCVLIA-----NLENLENLIVLMKSKEEVLD---LQSLSNPPQYLQRLYFKG-DMKK-----LPDW-IFKP 206 (261)
Q Consensus 142 ~~~~~~~~~~~~~l~-----~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~-~l~~-----l~~~-~~~~ 206 (261)
+++ ......+..+. ..++|++|++++|.+..... ...+..++ +|++|++++ .++. +... ...+
T Consensus 178 ~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 178 SNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPS 255 (461)
T ss_dssp CSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred cCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCC
Confidence 872 23222222222 35588889988887664310 12355677 899999988 7662 2222 3357
Q ss_pred CcccEEEeccCCCCCC----hhHHhccCCcccceEec-ccccce
Q 042184 207 KNVIRLGLDLSGLTED----PIRVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 207 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
++|++|++++|.+++. ++..+..+++|++|+++ |.++++
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 8999999999998875 45566778999999999 877544
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=4.2e-20 Score=144.31 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=153.7
Q ss_pred cccceeecCCCCCCCCcc-cccCcccccEEEecCCC-ceeccc-ccCCCCCCcEEeCCC-Ccccccc-hHhhccccccce
Q 042184 9 KLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKK-VKIIPK-SIGNLLGLESLDLKN-TLVRELP-VEIRNLKKLRYL 83 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~-i~~~~~-~l~~l~~L~~L~l~~-~~~~~~~-~~~~~l~~L~~L 83 (261)
+++++|++++|.++.++. .+..+++|++|++++|. ++.++. .+..+++|++|++++ |.++.++ ..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 379999999999996664 78899999999999997 886665 688999999999998 8998765 467889999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCC---eEecccc--chH-HHHHHhcccccc-EEEeeccCCCccchHHHHh
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQ---KLCIIEA--DSE-VLKELMKLRQLR-KLSIRPQNGNGKDLCVLIA 156 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~--~~~-~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~ 156 (261)
++++|.++ .+|. +..+++|+ .|++++| ... .+..+..+++|+ .|++++ +.. ..++....
T Consensus 111 ~l~~n~l~-----------~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l-~~i~~~~~ 176 (239)
T 2xwt_C 111 GIFNTGLK-----------MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGF-TSVQGYAF 176 (239)
T ss_dssp EEEEECCC-----------SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCC-CEECTTTT
T ss_pred eCCCCCCc-----------cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCC-cccCHhhc
Confidence 99999775 3555 78888888 9999987 222 334578899999 999987 222 34544433
Q ss_pred CCCCCceEEEeecc-cccccccccccCC-ccccceEEEec-cCcCCCccccCCCcccEEEeccCC
Q 042184 157 NLENLENLIVLMKS-KEEVLDLQSLSNP-PQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSG 218 (261)
Q Consensus 157 ~~~~L~~L~l~~n~-~~~~~~~~~~~~~-~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~ 218 (261)
..++|++|++++|. +.+. +...+..+ + +|+.|++++ .++.+|.. .+++|+.|+++++.
T Consensus 177 ~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~-~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVI-DKDAFGGVYS-GPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCEEEEEECTTCTTCCEE-CTTTTTTCSB-CCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCCEEEcCCCCCcccC-CHHHhhcccc-CCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 44789999999995 6643 33567788 8 999999999 99988875 68899999998764
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.6e-20 Score=159.92 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=81.6
Q ss_pred ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHh
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIA 156 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 156 (261)
++|++|++++|+++ .+| .++.+++|+.|++++| ...++. ..++|+.|+++++ . ...++ .+.
T Consensus 131 ~~L~~L~L~~n~l~-----------~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n-~-l~~l~-~~~ 192 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-----------KLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNN-Q-LEELP-ELQ 192 (454)
T ss_dssp TTCCEEECCSSCCS-----------SCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-C-CSSCC-CCT
T ss_pred CCCCEEECcCCCCC-----------CCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCC-c-CCcCc-ccc
Confidence 34555555555432 344 4666777777777766 222221 1246777777662 2 22233 466
Q ss_pred CCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184 157 NLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ 235 (261)
Q Consensus 157 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 235 (261)
.+++|++|++++|.+.+... ..+ +|++|++++ .++.+|. ++.+++|++|++++|.+++.. . .+++|+.
T Consensus 193 ~l~~L~~L~l~~N~l~~l~~-----~~~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~ 261 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKKLPD-----LPL-SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP-D---LPPSLEA 261 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCC-----CCT-TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC-S---CCTTCCE
T ss_pred CCCCCCEEECCCCcCCcCCC-----CcC-cccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccc-c---cccccCE
Confidence 77777777777776654211 123 788888887 7777774 677888888888888777522 1 2356666
Q ss_pred eEec-cccc
Q 042184 236 LRLA-GTYN 243 (261)
Q Consensus 236 L~l~-n~~~ 243 (261)
|+++ |.++
T Consensus 262 L~l~~N~l~ 270 (454)
T 1jl5_A 262 LNVRDNYLT 270 (454)
T ss_dssp EECCSSCCS
T ss_pred EECCCCccc
Confidence 6666 5554
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.4e-19 Score=154.04 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=58.1
Q ss_pred cccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccce
Q 042184 9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQY 88 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 88 (261)
++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+ .+|++|++++|.+..+| .+..+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 45666666666666655 3666666666666666665554432 35566666655555544 3455555555555555
Q ss_pred ecccC---------chhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 89 YFTSG---------SSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 89 ~~~~~---------~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
.+++. +.+..+.+..+| .++.+++|+.|++++|
T Consensus 206 ~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 206 SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCC
Confidence 44321 111111222344 3566666666666666
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=1.7e-20 Score=155.37 Aligned_cols=222 Identities=16% Similarity=0.157 Sum_probs=163.0
Q ss_pred eeecCCCCCC-CCcccccCcccccEEEecCCCceecc-----cccCCCC-CCcEEeCCCCcccc-cchHhhcc-----cc
Q 042184 13 VLDLEDAPVV-YLPEGVGSLLNLHYLSLRNKKVKIIP-----KSIGNLL-GLESLDLKNTLVRE-LPVEIRNL-----KK 79 (261)
Q Consensus 13 ~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~~~i~~~~-----~~l~~l~-~L~~L~l~~~~~~~-~~~~~~~l-----~~ 79 (261)
+.+++.+.++ .+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|.+.. .+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678888888 45555556677999999999998554 5677888 99999999999884 34455553 89
Q ss_pred ccceeccceecccCchhhhhhhhhcCCcccCC-CCCCeEecccc--chHHH----HHHhc-cccccEEEeeccCCCc---
Q 042184 80 LRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL-TNLQKLCIIEA--DSEVL----KELMK-LRQLRKLSIRPQNGNG--- 148 (261)
Q Consensus 80 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~--~~~~~----~~l~~-~~~L~~L~l~~~~~~~--- 148 (261)
|++|++++|.+++. ....+...+..+ ++|+.|++++| ....+ ..+.. .++|++|+++++ ...
T Consensus 82 L~~L~Ls~n~l~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~ 154 (362)
T 3goz_A 82 VTSLNLSGNFLSYK------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKS 154 (362)
T ss_dssp CCEEECCSSCGGGS------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSC
T ss_pred ccEEECcCCcCChH------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHH
Confidence 99999999988642 223333445566 79999999999 32223 33444 369999999982 222
Q ss_pred -cchHHHHhCCC-CCceEEEeeccccccccc---ccccCCccccceEEEec-cCcC-----CCccccC-CCcccEEEecc
Q 042184 149 -KDLCVLIANLE-NLENLIVLMKSKEEVLDL---QSLSNPPQYLQRLYFKG-DMKK-----LPDWIFK-PKNVIRLGLDL 216 (261)
Q Consensus 149 -~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~---~~~~~~~~~L~~L~l~~-~l~~-----l~~~~~~-~~~L~~L~l~~ 216 (261)
..++..+...+ +|++|++++|.+.+..+. ..+...+++|++|++++ .++. ++..+.. .++|++|++++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 25566677776 999999999988654331 12344423899999999 8875 6665655 46999999999
Q ss_pred CCCCCChhH----HhccCCcccceEec-cc
Q 042184 217 SGLTEDPIR----VLHALPNLLQLRLA-GT 241 (261)
Q Consensus 217 ~~~~~~~~~----~~~~~~~L~~L~l~-n~ 241 (261)
|.+++.... .+..+++|+.|+++ |.
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 999986553 34678999999999 87
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.2e-19 Score=159.35 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=153.8
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCce--ecccccCCCCCCcEEeCCCCccc--ccchHhhccccc
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVK--IIPKSIGNLLGLESLDLKNTLVR--ELPVEIRNLKKL 80 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L 80 (261)
+..+++|+.++++++....++..+..+++|+.|++++|.++ .++..+..+++|++|+++ +.+. .++.....+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 44555555555555433455666667778888888887765 333345677888888887 3333 344444667888
Q ss_pred cceeccc-----------eecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhc-cccccEEEeec---
Q 042184 81 RYLMVYQ-----------YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMK-LRQLRKLSIRP--- 143 (261)
Q Consensus 81 ~~L~l~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~-~~~L~~L~l~~--- 143 (261)
++|++++ +.++. ..+......+++|+.|+++.+ ....+..+.. +++|+.|++.+
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~---------~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQ---------RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCH---------HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred CEEEeecCccccccccccCccCH---------HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 8888883 33331 122333445788888888665 5555555554 88889888863
Q ss_pred cCCCcc-----chHHHHhCCCCCceEEEeecc--cccccccccccCCccccceEEEec-cCc--CCCccccCCCcccEEE
Q 042184 144 QNGNGK-----DLCVLIANLENLENLIVLMKS--KEEVLDLQSLSNPPQYLQRLYFKG-DMK--KLPDWIFKPKNVIRLG 213 (261)
Q Consensus 144 ~~~~~~-----~~~~~l~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~~L~~L~l~~-~l~--~l~~~~~~~~~L~~L~ 213 (261)
++...+ .++..+..+++|++|++++|. +.+.........++ +|++|++++ .++ .++..+..+++|+.|+
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP-NVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT-TCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc-cceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 222222 355567778899999997643 22221211123467 899999998 776 4555667889999999
Q ss_pred eccCCCCCChh-HHhccCCcccceEec-ccccceeeEEec
Q 042184 214 LDLSGLTEDPI-RVLHALPNLLQLRLA-GTYNYELFHFEA 251 (261)
Q Consensus 214 l~~~~~~~~~~-~~~~~~~~L~~L~l~-n~~~~~~~~~~~ 251 (261)
+++|.+++... .....+++|++|+++ |.+++.......
T Consensus 495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 99999876533 445679999999999 888876544333
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=2.7e-19 Score=157.12 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=67.7
Q ss_pred ccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEE
Q 042184 134 RQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRL 212 (261)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L 212 (261)
++|+.|+++++ ....+| ..+++|++|++++|.+... +. .++ +|+.|++++ .++.+|..+..+++|+.|
T Consensus 221 ~~L~~L~Ls~N--~L~~lp---~~l~~L~~L~Ls~N~L~~l-p~----~~~-~L~~L~Ls~N~L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGN--RLTSLP---VLPSELKELMVSGNRLTSL-PM----LPS-GLLSLSVYRNQLTRLPESLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSS--CCSCCC---CCCTTCCEEECCSSCCSCC-CC----CCT-TCCEEECCSSCCCSCCGGGGGSCTTCEE
T ss_pred CCCCEEEccCC--ccCcCC---CCCCcCcEEECCCCCCCcC-Cc----ccc-cCcEEeCCCCCCCcCCHHHhhccccCEE
Confidence 56777777762 222344 4668999999999987643 31 456 999999999 999999999999999999
Q ss_pred EeccCCCCCChhHHhccCC
Q 042184 213 GLDLSGLTEDPIRVLHALP 231 (261)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~ 231 (261)
++++|.+++..+..+..++
T Consensus 290 ~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 290 NLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ECCSCCCCHHHHHHHHHHH
T ss_pred EecCCCCCCcCHHHHHhcc
Confidence 9999999987777665443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2e-18 Score=138.68 Aligned_cols=165 Identities=22% Similarity=0.307 Sum_probs=76.3
Q ss_pred CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184 7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY 86 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 86 (261)
++++|++|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 44555555555555554432 4455555555555555554443 4555555555555555554432 4555555555555
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEE
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI 165 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 165 (261)
+|.+++ + +.+..+++|+.|++++| .... ..+..+++|+.|++++ +... ..+. +..+++|++|+
T Consensus 121 ~n~i~~-----------~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~-~~~~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 121 HNGISD-----------I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQIS-DIVP-LAGLTKLQNLY 184 (291)
T ss_dssp TSCCCC-----------C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCC-CCGG-GTTCTTCCEEE
T ss_pred CCcCCC-----------C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccc-cchh-hcCCCccCEEE
Confidence 554431 1 23444555555555554 1111 2344444444444444 1111 1111 44444444444
Q ss_pred EeecccccccccccccCCccccceEEEec
Q 042184 166 VLMKSKEEVLDLQSLSNPPQYLQRLYFKG 194 (261)
Q Consensus 166 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 194 (261)
+++|.+.+. ..+..++ +|+.|++++
T Consensus 185 L~~N~i~~l---~~l~~l~-~L~~L~l~~ 209 (291)
T 1h6t_A 185 LSKNHISDL---RALAGLK-NLDVLELFS 209 (291)
T ss_dssp CCSSCCCBC---GGGTTCT-TCSEEEEEE
T ss_pred CCCCcCCCC---hhhccCC-CCCEEECcC
Confidence 444444322 1133444 444444444
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1e-18 Score=137.39 Aligned_cols=176 Identities=20% Similarity=0.186 Sum_probs=137.8
Q ss_pred ccccEEEecCCCceecccccCCCCCCcEEeCCCCccccc-chHhhccccccceeccceecccCchhhhhhhhhcCCcccC
Q 042184 32 LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGS 110 (261)
Q Consensus 32 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 110 (261)
...+.++++++.++.+|..+. +++++|++++|.+..+ +..+..+++|++|++++|.+++ ..+..+..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~ 81 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT----------LSAGVFDD 81 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC----------CCTTTTTT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc----------cCHhHhcc
Confidence 567889999999999987764 7899999999999855 4468899999999999998764 34456788
Q ss_pred CCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccc
Q 042184 111 LTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQ 188 (261)
Q Consensus 111 ~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 188 (261)
+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++ +|+
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~ 158 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLT-NLQ 158 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT-TCC
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCc-CCC
Confidence 999999999998 333345567888999999987 33333333446788899999999988775544 4577788 899
Q ss_pred eEEEec-cCcCCCc-cccCCCcccEEEeccCCCCCC
Q 042184 189 RLYFKG-DMKKLPD-WIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 189 ~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~~~~~~ 222 (261)
+|++++ .++.++. .+..+++|+.|++++|.+...
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999988 8886665 566788899999999988764
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.2e-19 Score=143.33 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=148.9
Q ss_pred cceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceec
Q 042184 11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYF 90 (261)
Q Consensus 11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 90 (261)
+..+.+....+..+. ....+++|+.|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 344455665555332 23578999999999999987754 7889999999999999997766 88999999999999977
Q ss_pred ccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeec
Q 042184 91 TSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMK 169 (261)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 169 (261)
++ + +.+..+++|+.|++++| .... ..+..+++|+.|+++++ .. ..+ ..+..+++|++|++++|
T Consensus 103 ~~-----------~-~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n-~l-~~~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 103 KD-----------L-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KI-TDI-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CC-----------G-GGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSS-CC-CCC-GGGGGCTTCSEEECCSS
T ss_pred CC-----------C-hhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCC-cC-Ccc-hhhccCCCCCEEEccCC
Confidence 52 2 34888999999999999 2222 45788899999999882 22 223 56788999999999999
Q ss_pred ccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCCh
Q 042184 170 SKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDP 223 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~ 223 (261)
.+.+..+ +..++ +|+.|++++ .++.++. +..+++|+.|++++|.+++..
T Consensus 167 ~l~~~~~---l~~l~-~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 167 QISDIVP---LAGLT-KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCCCCGG---GTTCT-TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred ccccchh---hcCCC-ccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 8876544 67788 999999999 8888865 788999999999999877643
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=2.9e-18 Score=134.82 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=140.9
Q ss_pred cccceeecCCCCCCCCcccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccc-hHhhccccccceecc
Q 042184 9 KLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVY 86 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 86 (261)
...++++++++.+..+|..+. ++++.|++++|.++.++ ..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999998887665 68999999999998544 46889999999999999999554 457889999999999
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHH-HHHHhccccccEEEeeccCCCccchHHHHhCCCCCceE
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENL 164 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 164 (261)
+|.+++ ..+..+..+++|+.|++++| ...+ +..+..+++|+.|++++ +......+..+..+++|++|
T Consensus 92 ~n~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 92 NNQLAS----------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred CCcccc----------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEE
Confidence 998753 23356788999999999999 3333 34468899999999998 33333334468889999999
Q ss_pred EEeecccccccccccccCCccccceEEEec-cCcC
Q 042184 165 IVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKK 198 (261)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~ 198 (261)
++++|.+.+..+ ..+..++ +|+.|++++ .+..
T Consensus 161 ~L~~N~l~~~~~-~~~~~l~-~L~~L~l~~N~~~c 193 (251)
T 3m19_A 161 SLSTNQLQSVPH-GAFDRLG-KLQTITLFGNQFDC 193 (251)
T ss_dssp ECCSSCCSCCCT-TTTTTCT-TCCEEECCSCCBCT
T ss_pred ECCCCcCCccCH-HHHhCCC-CCCEEEeeCCceeC
Confidence 999998876544 5578888 999999998 7763
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=9.4e-19 Score=152.06 Aligned_cols=186 Identities=18% Similarity=0.141 Sum_probs=148.5
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecccee
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 89 (261)
++++|++++|.++.+|..+. ++|+.|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 89999999999998887653 88999999999999888 457999999999999998877 544 89999999997
Q ss_pred cccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEee
Q 042184 90 FTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLM 168 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 168 (261)
++ .+|. .+++|+.|++++| ...++. .+++|+.|+++++ . ...+|. +. ++|++|++++
T Consensus 132 l~-----------~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~-L~~lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 132 LT-----------MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-Q-LTFLPE-LP--ESLEALDVST 189 (571)
T ss_dssp CS-----------CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-C-CSCCCC-CC--TTCCEEECCS
T ss_pred CC-----------CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-C-CCCcch-hh--CCCCEEECcC
Confidence 75 3555 6789999999999 333443 5789999999882 2 233555 44 8999999999
Q ss_pred cccccccccccccCCcccc-------ceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184 169 KSKEEVLDLQSLSNPPQYL-------QRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALP 231 (261)
Q Consensus 169 n~~~~~~~~~~~~~~~~~L-------~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 231 (261)
|.+... +. +. .+| +.|++++ .++.+|..+..+++|+.|++++|.+++..+..+..++
T Consensus 190 N~L~~l-p~--~~---~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 190 NLLESL-PA--VP---VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCSSC-CC--CC-----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCCch-hh--HH---HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 987733 31 22 156 9999999 9999999888899999999999999988777766543
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=4e-19 Score=155.81 Aligned_cols=171 Identities=21% Similarity=0.290 Sum_probs=90.4
Q ss_pred cCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184 29 GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF 108 (261)
Q Consensus 29 ~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 108 (261)
..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+++ + +.+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-----------l-~~l 105 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-----------L-SSL 105 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-----------C-TTS
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-----------C-hhh
Confidence 34555555555555555443 24555556666666555554443 5555556666666554431 1 245
Q ss_pred cCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcccc
Q 042184 109 GSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYL 187 (261)
Q Consensus 109 ~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L 187 (261)
..+++|+.|++++| ...+ ..+..+++|+.|+++++ ... .+ ..+..+++|+.|++++|.+.+..+ +..++ +|
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~L 177 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KIT-DI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLT-KL 177 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSS-CCC-CC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCT-TC
T ss_pred ccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCC-ccC-Cc-hhhcccCCCCEEECcCCcCCCchh---hccCC-CC
Confidence 55555666666555 1111 23555556666666551 111 12 345556666666666665554333 44555 66
Q ss_pred ceEEEec-cCcCCCccccCCCcccEEEeccCCCCCC
Q 042184 188 QRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 188 ~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 222 (261)
+.|+|++ .++.++ .+..+++|+.|++++|.+++.
T Consensus 178 ~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 6666666 555553 355566666666666655543
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1e-18 Score=153.56 Aligned_cols=230 Identities=16% Similarity=0.094 Sum_probs=119.1
Q ss_pred cCccccceeecCCCCCC-----CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeC------------------
Q 042184 6 ANFKLMKVLDLEDAPVV-----YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDL------------------ 62 (261)
Q Consensus 6 ~~~~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l------------------ 62 (261)
..+++|++|+++++.+. .++..+..+++|+.|++++|.+..++..+..+++|++|++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 45677777777777664 2233344567777777776665444433333444444443
Q ss_pred ---------CCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHh
Q 042184 63 ---------KNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELM 131 (261)
Q Consensus 63 ---------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~ 131 (261)
+++....++..+..+++|++|++++|.++. ..+...+..+++|+.|+++++ ....+....
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~---------~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET---------EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH---------HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH---------HHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence 333223445555667777777777776532 122233455566666666543 222333344
Q ss_pred ccccccEEEeec----------cCCCcc-chHHHHhCCCCCceEEEeeccccccccc-----------------------
Q 042184 132 KLRQLRKLSIRP----------QNGNGK-DLCVLIANLENLENLIVLMKSKEEVLDL----------------------- 177 (261)
Q Consensus 132 ~~~~L~~L~l~~----------~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~----------------------- 177 (261)
.+++|++|++.+ ++.... .+......+++|++|+++.+.+.+....
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 555566665552 222221 1222233345555555544433221110
Q ss_pred ----------ccccCCccccceEEEec---cCc--CCCccccCCCcccEEEeccCCCCCCh-hHHhccCCcccceEec-c
Q 042184 178 ----------QSLSNPPQYLQRLYFKG---DMK--KLPDWIFKPKNVIRLGLDLSGLTEDP-IRVLHALPNLLQLRLA-G 240 (261)
Q Consensus 178 ----------~~~~~~~~~L~~L~l~~---~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~-n 240 (261)
..+..++ +|++|+++. .++ .+......+++|++|++++|.+++.. +..+..+++|++|+++ |
T Consensus 420 ~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp SSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred cCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 0122345 566666642 133 11111234677888888888877633 3455678888888888 7
Q ss_pred cccce
Q 042184 241 TYNYE 245 (261)
Q Consensus 241 ~~~~~ 245 (261)
.+++.
T Consensus 499 ~l~~~ 503 (592)
T 3ogk_B 499 CFSER 503 (592)
T ss_dssp CCBHH
T ss_pred CCcHH
Confidence 76543
No 96
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=3.3e-18 Score=151.16 Aligned_cols=228 Identities=18% Similarity=0.120 Sum_probs=153.7
Q ss_pred ccCccccceeecCCCCCCCCcc--------------------cccCcccccEEEecCCCce---ecccccCCCCCCcEEe
Q 042184 5 IANFKLMKVLDLEDAPVVYLPE--------------------GVGSLLNLHYLSLRNKKVK---IIPKSIGNLLGLESLD 61 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~--------------------~~~~l~~L~~L~l~~~~i~---~~~~~l~~l~~L~~L~ 61 (261)
+..+..++.|++.++.+..++. ....+++|+.++++.|.+. ..+.....+.+|++++
T Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 403 (635)
T 4g8a_A 324 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD 403 (635)
T ss_dssp GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhh
Confidence 3445566777777665443221 1123455666666655543 2333344555666666
Q ss_pred CCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEE
Q 042184 62 LKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKL 139 (261)
Q Consensus 62 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L 139 (261)
+..+.....+..+..+++|+.++++.+.... ..-...+..+++++.++++.+ ....+..+..+++++.|
T Consensus 404 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~---------~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 404 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ---------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp CCSCSEEEECSCCTTCTTCCEEECTTSEEES---------TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccchhhhhccccc---------cccccccccccccccccccccccccccccccccchhhhhh
Confidence 6665555444455566666666666655432 122345667778888888877 33445556778888999
Q ss_pred EeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCcccEEEeccC
Q 042184 140 SIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVIRLGLDLS 217 (261)
Q Consensus 140 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~~L~l~~~ 217 (261)
+++++.......+..+..+++|++|++++|.+.+..+ ..+..++ +|++|+|++ .++.++. .+..+++|+.|++++|
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCT-TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred hhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCC-CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 8887322333456677888999999999998876655 5578888 999999999 8887654 4677899999999999
Q ss_pred CCCCChhHHhccC-CcccceEec-cccc
Q 042184 218 GLTEDPIRVLHAL-PNLLQLRLA-GTYN 243 (261)
Q Consensus 218 ~~~~~~~~~~~~~-~~L~~L~l~-n~~~ 243 (261)
.+++..+..+..+ ++|++|+++ |+++
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9998877788877 589999999 8875
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.1e-18 Score=148.32 Aligned_cols=173 Identities=21% Similarity=0.294 Sum_probs=143.6
Q ss_pred ccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184 5 IANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 84 (261)
+..+++|++|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 456889999999999999776 47889999999999999997766 889999999999999998776 688899999999
Q ss_pred ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN 163 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 163 (261)
+++|.+++ + +.+..+++|+.|++++| ...+ ..+..+++|+.|++++ +......+ +..+++|++
T Consensus 116 Ls~N~l~~-----------l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 116 LEHNGISD-----------I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp CTTSCCCC-----------C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCE
T ss_pred ecCCCCCC-----------C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCE
Confidence 99997752 2 45888999999999999 3333 6688999999999988 33333333 889999999
Q ss_pred EEEeecccccccccccccCCccccceEEEec-cCcCCC
Q 042184 164 LIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLP 200 (261)
Q Consensus 164 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~ 200 (261)
|++++|.+.+. ..+..++ +|+.|++++ .+...|
T Consensus 180 L~Ls~N~i~~l---~~l~~l~-~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 180 LYLSKNHISDL---RALAGLK-NLDVLELFSQECLNKP 213 (605)
T ss_dssp EECCSSCCCBC---GGGTTCT-TCSEEECCSEEEECCC
T ss_pred EECcCCCCCCC---hHHccCC-CCCEEEccCCcCcCCc
Confidence 99999988754 3477888 999999998 776544
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.4e-18 Score=129.48 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=120.1
Q ss_pred cCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcc
Q 042184 29 GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGF 108 (261)
Q Consensus 29 ~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 108 (261)
+.+++|+.|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+++ ..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~----------~~~~~l 108 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS----------DKIPNL 108 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG----------GGSCCC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc----------ccChhh
Confidence 56788999999999888777 5788899999999998766554 67888999999999987653 456778
Q ss_pred cCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccc
Q 042184 109 GSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQY 186 (261)
Q Consensus 109 ~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 186 (261)
..+++|+.|++++| ....+..+..+++|+.|+++++ .....++ .+..+++|++|++++|.+.+.. .+..++ +
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n-~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~-~ 182 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN-GAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFP-K 182 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC-TBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCS-S
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC-CCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCC-C
Confidence 88999999999998 5557788899999999999883 2233444 6888999999999999887533 477788 9
Q ss_pred cceEEEec-cCc
Q 042184 187 LQRLYFKG-DMK 197 (261)
Q Consensus 187 L~~L~l~~-~l~ 197 (261)
|++|++++ .++
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 99999988 654
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.7e-17 Score=122.34 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=122.4
Q ss_pred CCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHH
Q 042184 52 GNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKE 129 (261)
Q Consensus 52 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~ 129 (261)
..+++|++|++++|.+..++ .+..+++|++|++++|.++ .+..+..+++|+.|++++| ....+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT------------NYNPISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS------------CCGGGTTCTTCCEEEEECTTCBGGGSCC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC------------cchhhhcCCCCCEEEeECCccCcccChh
Confidence 56789999999999999877 6889999999999999553 2347788999999999998 4456677
Q ss_pred HhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCc
Q 042184 130 LMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKN 208 (261)
Q Consensus 130 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~ 208 (261)
++.+++|+.|++++ +......+..+..+++|++|++++|...+..+ .+..++ +|++|++++ .++.++ .+..+++
T Consensus 108 l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~-~L~~L~l~~n~i~~~~-~l~~l~~ 182 (197)
T 4ezg_A 108 LSGLTSLTLLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLP-ELKSLNIQFDGVHDYR-GIEDFPK 182 (197)
T ss_dssp CTTCTTCCEEECCS-SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCS-SCCEEECTTBCCCCCT-TGGGCSS
T ss_pred hcCCCCCCEEEecC-CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCC-CCCEEECCCCCCcChH-HhccCCC
Confidence 88899999999988 34444567889999999999999997333333 477888 999999999 888877 5778999
Q ss_pred ccEEEeccCCCCC
Q 042184 209 VIRLGLDLSGLTE 221 (261)
Q Consensus 209 L~~L~l~~~~~~~ 221 (261)
|++|++++|.+.+
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999998764
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=6.3e-17 Score=140.62 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=141.9
Q ss_pred cccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCC
Q 042184 33 NLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLT 112 (261)
Q Consensus 33 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (261)
+++.|++++|.++.+|..+ .++|++|++++|.++.+| ..+++|++|++++|+++ .+|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~-----------~ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLS-----------TLPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-----------CCCC-CCT--
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC-----------Ccch-hhc--
Confidence 8999999999999888866 389999999999999888 55799999999999775 3555 444
Q ss_pred CCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEE
Q 042184 113 NLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLY 191 (261)
Q Consensus 113 ~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 191 (261)
+|+.|++++| ...++. .+++|+.|++++ +. ...+|. .+++|++|++++|.+.+ .+. +. + +|+.|+
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~-~L~~L~ 186 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADN-NQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE--LP--E-SLEALD 186 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCS-SC-CSCCCC---CCTTCCEEECCSSCCSC-CCC--CC--T-TCCEEE
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCC-Cc-cCcCCC---cCCCcCEEECCCCCCCC-cch--hh--C-CCCEEE
Confidence 8999999999 333444 689999999998 22 233544 57899999999998876 342 43 5 999999
Q ss_pred Eec-cCcCCCccccCCCcc-------cEEEeccCCCCCChhHHhccCCcccceEec-ccccce
Q 042184 192 FKG-DMKKLPDWIFKPKNV-------IRLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTYNYE 245 (261)
Q Consensus 192 l~~-~l~~l~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~~~~ 245 (261)
+++ .++.+|. +.. +| +.|++++|.++. ++..+..+++|+.|+++ |.+++.
T Consensus 187 Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 187 VSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCSSCCSSCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CcCCCCCchhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 999 9999988 544 77 999999999995 56667779999999999 998754
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.4e-17 Score=131.82 Aligned_cols=171 Identities=19% Similarity=0.231 Sum_probs=124.6
Q ss_pred CccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceecc
Q 042184 7 NFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVY 86 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 86 (261)
++.++..++++++.+++++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4566777788888888665 4677888888888888888776 57788888888888888887766 7888888888888
Q ss_pred ceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEE
Q 042184 87 QYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLI 165 (261)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 165 (261)
+|++++ ++.. .. ++|+.|++++| .... ..+..+++|+.|+++++ . ...++ .+..+++|++|+
T Consensus 94 ~N~l~~-----------l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N-~-i~~~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 94 RNRLKN-----------LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNN-K-LKSIV-MLGFLSKLEVLD 156 (263)
T ss_dssp SSCCSC-----------CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTS-C-CCBCG-GGGGCTTCCEEE
T ss_pred CCccCC-----------cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCC-c-CCCCh-HHccCCCCCEEE
Confidence 887652 3332 22 78888888888 2222 34777888888888772 2 22333 577788888888
Q ss_pred EeecccccccccccccCCccccceEEEec-cCcCCCc
Q 042184 166 VLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD 201 (261)
Q Consensus 166 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~ 201 (261)
+++|.+.+. ..+..++ +|+.|++++ .++..|.
T Consensus 157 L~~N~i~~~---~~l~~l~-~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 157 LHGNEITNT---GGLTRLK-KVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CTTSCCCBC---TTSTTCC-CCCEEEEEEEEEECCCE
T ss_pred CCCCcCcch---HHhccCC-CCCEEeCCCCcccCCcc
Confidence 888877655 3466777 888888888 7665543
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=3.7e-17 Score=134.65 Aligned_cols=215 Identities=15% Similarity=0.090 Sum_probs=99.9
Q ss_pred cccceeecCCCCCCCCcc-cccCcccccEEEecCCCce-eccc-ccCCCCCCcE-EeCCCCccccc-chHhhccccccce
Q 042184 9 KLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKKVK-IIPK-SIGNLLGLES-LDLKNTLVREL-PVEIRNLKKLRYL 83 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~i~-~~~~-~l~~l~~L~~-L~l~~~~~~~~-~~~~~~l~~L~~L 83 (261)
+++++|++++|.|+.+|. .|+++++|++|++++|.+. .+|. .+.+++++++ +.+..|.+..+ +..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 355666666666665543 4556666666666666553 3432 3455555543 33444555544 3344556666666
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHH-HHHhcc-ccccEEEeeccCCCccchHHHHhCCC
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVL-KELMKL-RQLRKLSIRPQNGNGKDLCVLIANLE 159 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~-~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~ 159 (261)
++++|+++. .-+..+....++..+++.++ ...++ ..+..+ ..++.|++++ +....++.......
T Consensus 110 ~l~~n~l~~----------~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~--N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 110 LISNTGIKH----------LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK--NGIQEIHNSAFNGT 177 (350)
T ss_dssp EEEEECCSS----------CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS--SCCCEECTTSSTTE
T ss_pred ccccccccc----------CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc--ccccCCChhhcccc
Confidence 666665432 11112223334444444332 11111 112222 2345555554 22223333333344
Q ss_pred CCceEEEeecccccccccccccCCccccceEEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhccCCcccceEe
Q 042184 160 NLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRL 238 (261)
Q Consensus 160 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 238 (261)
++++++++++...+.++...+..++ +|++|++++ .++.+|.. .+.+|+.|...++.-...++ .+..+++|+.+++
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l 253 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASL 253 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred chhHHhhccCCcccCCCHHHhccCc-ccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence 5555555543322333323445555 666666665 55555542 23445555544443222222 3455666666666
Q ss_pred c
Q 042184 239 A 239 (261)
Q Consensus 239 ~ 239 (261)
.
T Consensus 254 ~ 254 (350)
T 4ay9_X 254 T 254 (350)
T ss_dssp S
T ss_pred C
Confidence 4
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=4.2e-17 Score=124.50 Aligned_cols=144 Identities=22% Similarity=0.268 Sum_probs=90.3
Q ss_pred ceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccchH-hhccccccceecccee
Q 042184 12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQYY 89 (261)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 89 (261)
+.++.+++++..+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56777777777777544 3578888888888885554 367788888888888888866543 5678888888888886
Q ss_pred cccCchhhhhhhhhcC-CcccCCCCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184 90 FTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV 166 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 166 (261)
+++ ++ ..+..+++|+.|++++| ... .+..+..+++|+.|++++ +......+..+..+++|++|++
T Consensus 88 l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 88 LQS-----------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCc-----------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEe
Confidence 642 33 33567777777777766 222 222244555555555554 1222222223445555555555
Q ss_pred eec
Q 042184 167 LMK 169 (261)
Q Consensus 167 ~~n 169 (261)
++|
T Consensus 156 ~~N 158 (208)
T 2o6s_A 156 HDN 158 (208)
T ss_dssp CSC
T ss_pred cCC
Confidence 555
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.8e-16 Score=125.43 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=125.8
Q ss_pred cccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccce
Q 042184 4 SIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYL 83 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 83 (261)
.+.++++|++|++++|.+..++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++... . ++|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc-c-CcccEE
Confidence 4678899999999999999887 68889999999999999998777 899999999999999999776533 3 899999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCc
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLE 162 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 162 (261)
++++|.+++ + +.+..+++|+.|++++| .... ..+..+++|+.|+++++ ... .. ..+..+++|+
T Consensus 112 ~L~~N~l~~-----------~-~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N-~i~-~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 112 FLDNNELRD-----------T-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN-EIT-NT-GGLTRLKKVN 175 (263)
T ss_dssp ECCSSCCSB-----------S-GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTS-CCC-BC-TTSTTCCCCC
T ss_pred EccCCccCC-----------C-hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCC-cCc-ch-HHhccCCCCC
Confidence 999998753 2 35889999999999999 3333 36888999999999982 222 22 5688899999
Q ss_pred eEEEeecccccc
Q 042184 163 NLIVLMKSKEEV 174 (261)
Q Consensus 163 ~L~l~~n~~~~~ 174 (261)
+|++++|.+...
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 999999987644
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.5e-18 Score=151.31 Aligned_cols=186 Identities=16% Similarity=0.122 Sum_probs=94.3
Q ss_pred CCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCch---hhhhhhhhcCCcccCCCCCCeEe-cccc-chHH
Q 042184 52 GNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSS---IAEEAAAKLHPGFGSLTNLQKLC-IIEA-DSEV 126 (261)
Q Consensus 52 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~l~~~~~~~~~L~~L~-l~~~-~~~~ 126 (261)
..+++|+.|++++|.++.+|..++.+++|+.|++++|......+ .........|..++.+++|+.|+ ++.+ ...+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34555666666666655566666666666666654432000000 00001112334444555555555 3332 1111
Q ss_pred HH------HHhcc--ccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCc
Q 042184 127 LK------ELMKL--RQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMK 197 (261)
Q Consensus 127 ~~------~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~ 197 (261)
.. .+..+ ..|+.|++++ +....+|. ++.+++|++|++++|.+. ..| ..+..++ +|+.|++++ .++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~--n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~-~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAH--KDLTVLCH-LEQLLLVTHLDLSHNRLR-ALP-PALAALR-CLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTT--SCCSSCCC-GGGGTTCCEEECCSSCCC-CCC-GGGGGCT-TCCEEECCSSCCC
T ss_pred hhhhhhcccccccCccCceEEEecC--CCCCCCcC-ccccccCcEeecCccccc-ccc-hhhhcCC-CCCEEECCCCCCC
Confidence 10 11111 2456666665 22223443 566666666666666655 233 2455566 666666666 666
Q ss_pred CCCccccCCCcccEEEeccCCCCCCh-hHHhccCCcccceEec-ccccc
Q 042184 198 KLPDWIFKPKNVIRLGLDLSGLTEDP-IRVLHALPNLLQLRLA-GTYNY 244 (261)
Q Consensus 198 ~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~-n~~~~ 244 (261)
.+| .++.+++|+.|++++|.+++.. +..+..+++|+.|+++ |.+++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 665 5666666666666666666554 5566666666666666 66543
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.2e-16 Score=121.94 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=98.9
Q ss_pred ccEEEecCCCceecccccCCCCCCcEEeCCCCcccccch-HhhccccccceeccceecccCchhhhhhhhhcC-CcccCC
Q 042184 34 LHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH-PGFGSL 111 (261)
Q Consensus 34 L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~ 111 (261)
-+.++.+++.++.+|..+ .++|++|++++|.+..++. .+..+++|++|++++|+++ .++ ..+..+
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l 75 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-----------SLPNGVFNKL 75 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-----------CCCTTTTTTC
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-----------ccChhhcCCC
Confidence 356778888888777654 4689999999999886654 4678899999999999765 333 345677
Q ss_pred CCCCeEecccc-chHH-HHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccce
Q 042184 112 TNLQKLCIIEA-DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQR 189 (261)
Q Consensus 112 ~~L~~L~l~~~-~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 189 (261)
++|+.|++++| .... +..+..+++|+.|++++ +......+..+..+++|++|++++|.+.+..+ ..+..++ +|++
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~-~L~~ 152 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLT-SLQY 152 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCT-TCCE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCC-CccE
Confidence 88888888776 2222 22244555555555554 12222222234445555555555554443222 2234444 5555
Q ss_pred EEEec-cCcCCCccccCCCcccEEEeccCCCCCChhHHhc
Q 042184 190 LYFKG-DMKKLPDWIFKPKNVIRLGLDLSGLTEDPIRVLH 228 (261)
Q Consensus 190 L~l~~-~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 228 (261)
|++++ .+. +.++.|+.|+++.|.+++.++..++
T Consensus 153 L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 153 IWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp EECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred EEecCCCee------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 55544 221 2334455555555555544444333
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=8.9e-18 Score=147.57 Aligned_cols=202 Identities=12% Similarity=0.081 Sum_probs=94.3
Q ss_pred cCcccccEEEecCCCce--ecccccCCCCCCcEEeCCCCccc--ccchHhhccccccceeccc---------eecccCch
Q 042184 29 GSLLNLHYLSLRNKKVK--IIPKSIGNLLGLESLDLKNTLVR--ELPVEIRNLKKLRYLMVYQ---------YYFTSGSS 95 (261)
Q Consensus 29 ~~l~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~---------~~~~~~~~ 95 (261)
..+++|+.|++++|.++ .++..+..+++|++|++++| +. .++.....+++|++|+++. +.++.
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~--- 361 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE--- 361 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH---
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH---
Confidence 34566666776666655 22233456666666666665 32 2222233466666666632 22211
Q ss_pred hhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHh-ccccccEEEee-----ccCCCc-----cchHHHHhCCCCCc
Q 042184 96 IAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELM-KLRQLRKLSIR-----PQNGNG-----KDLCVLIANLENLE 162 (261)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~-~~~~L~~L~l~-----~~~~~~-----~~~~~~l~~~~~L~ 162 (261)
..+......+++|+.|.+..+ .......+. .+++|+.|++. +++... ..++..+..+++|+
T Consensus 362 ------~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 362 ------QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp ------HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred ------HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 011111123455666655444 333333332 45666666665 111211 12333345556666
Q ss_pred eEEEeecccccccccccccC-CccccceEEEec-cCc--CCCccccCCCcccEEEeccCCCCCChhH-HhccCCcccceE
Q 042184 163 NLIVLMKSKEEVLDLQSLSN-PPQYLQRLYFKG-DMK--KLPDWIFKPKNVIRLGLDLSGLTEDPIR-VLHALPNLLQLR 237 (261)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~-~~~~L~~L~l~~-~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 237 (261)
+|++++ .+.+. .+..+.. ++ +|++|++++ .++ .+......+++|+.|++++|.+++.... .+..+++|+.|+
T Consensus 436 ~L~L~~-~l~~~-~~~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 436 RLSLSG-LLTDK-VFEYIGTYAK-KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp EEECCS-SCCHH-HHHHHHHHCT-TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred EEeecC-cccHH-HHHHHHHhch-hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 666654 22211 1112222 44 566666665 554 1211123456666666666666443332 233466666666
Q ss_pred ec-cccc
Q 042184 238 LA-GTYN 243 (261)
Q Consensus 238 l~-n~~~ 243 (261)
++ |.++
T Consensus 513 l~~~~~~ 519 (594)
T 2p1m_B 513 MSSCSVS 519 (594)
T ss_dssp EESSCCB
T ss_pred eeCCCCC
Confidence 66 5543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=121.29 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=108.1
Q ss_pred ceeecCCCCCCCCcccccCcccccEEEecCCCceecc--cccCCCCCCcEEeCCCCcccccch-Hhhccccccceeccce
Q 042184 12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIP--KSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQY 88 (261)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 88 (261)
++++++++.++.+|..+. ..++.|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 578888888888887554 45688999999888553 346788899999999998886544 6788888999999998
Q ss_pred ecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184 89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV 166 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 166 (261)
.+++ ..+..+..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|++|++
T Consensus 92 ~l~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 92 RLEN----------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp CCCC----------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEEC
T ss_pred ccCc----------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEe
Confidence 7653 22345778888888888887 333355566777777777776 3333333566677777777777
Q ss_pred eecccccc
Q 042184 167 LMKSKEEV 174 (261)
Q Consensus 167 ~~n~~~~~ 174 (261)
++|.+...
T Consensus 161 ~~N~l~c~ 168 (220)
T 2v70_A 161 LANPFNCN 168 (220)
T ss_dssp CSCCEECS
T ss_pred cCcCCcCC
Confidence 77766543
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=3.2e-16 Score=129.11 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=152.9
Q ss_pred cCccccceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccc-ccch-Hhhccccccc
Q 042184 6 ANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVR-ELPV-EIRNLKKLRY 82 (261)
Q Consensus 6 ~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~-~~~~-~~~~l~~L~~ 82 (261)
-.|.. ++++.++++++.+|..+. +++++|++++|+|+.+|. .+.++++|++|++++|.+. .++. .+.+++++++
T Consensus 7 C~C~~-~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 7 CHCSN-RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp SEEET-TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred cEeeC-CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 34433 678888889999987663 689999999999998886 5899999999999999975 5554 4677888776
Q ss_pred -eeccceecccCchhhhhhhhhc-CCcccCCCCCCeEecccc-chHH-HHHHhccccccEEEeeccCCCccchHHHHhCC
Q 042184 83 -LMVYQYYFTSGSSIAEEAAAKL-HPGFGSLTNLQKLCIIEA-DSEV-LKELMKLRQLRKLSIRPQNGNGKDLCVLIANL 158 (261)
Q Consensus 83 -L~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~-~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 158 (261)
+.++.|+++ .+ +..+..+++|+.|++++| .... ...+.....+..+++.+.+.........+..+
T Consensus 84 ~l~~~~N~l~-----------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 84 IRIEKANNLL-----------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp EEEEEETTCC-----------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred hhcccCCccc-----------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 445556554 44 567889999999999998 3222 22334455677777765333332223344444
Q ss_pred -CCCceEEEeecccccccccccccCCccccceEEEec--cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCccc
Q 042184 159 -ENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG--DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLL 234 (261)
Q Consensus 159 -~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~--~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 234 (261)
..++.|++++|.+....+ ..+ ..+ +++++++.+ .++.+|.. +..+++|+.|++++|.++......+.++++|+
T Consensus 153 ~~~l~~L~L~~N~i~~i~~-~~f-~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 153 SFESVILWLNKNGIQEIHN-SAF-NGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp BSSCEEEECCSSCCCEECT-TSS-TTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred chhhhhhccccccccCCCh-hhc-ccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 468899999998875433 333 345 799999975 78888864 57899999999999999875554444444444
Q ss_pred ceEe
Q 042184 235 QLRL 238 (261)
Q Consensus 235 ~L~l 238 (261)
.++.
T Consensus 230 ~l~~ 233 (350)
T 4ay9_X 230 ARST 233 (350)
T ss_dssp CTTC
T ss_pred hccC
Confidence 4443
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=6e-17 Score=142.29 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=29.1
Q ss_pred CCcccEEEeccCCCCCChhHHh-ccCCcccceEec-cccccee
Q 042184 206 PKNVIRLGLDLSGLTEDPIRVL-HALPNLLQLRLA-GTYNYEL 246 (261)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~-n~~~~~~ 246 (261)
+++|+.|++++|.+++.....+ ..+++|++|+++ |.+++..
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 6778888888887776555444 568888888888 7765443
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=6.9e-16 Score=118.79 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=102.5
Q ss_pred ceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCccccc-chHhhccccccceecccee
Q 042184 12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQYY 89 (261)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~ 89 (261)
+.++.++++++.+|..+. ++++.|++++|.++.++. .+..+++|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888888887554 678889999988885554 678888999999999888854 6678888889999998886
Q ss_pred cccCchhhhhhhhhcCCc-ccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184 90 FTSGSSIAEEAAAKLHPG-FGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV 166 (261)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 166 (261)
++ .++.. +..+++|+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|+++++
T Consensus 92 l~-----------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 92 IT-----------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEEC
T ss_pred CC-----------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEe
Confidence 64 34443 567788888888777 333344566666666666665 2222222334555666666666
Q ss_pred eecccc
Q 042184 167 LMKSKE 172 (261)
Q Consensus 167 ~~n~~~ 172 (261)
++|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 666554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=9.4e-16 Score=118.75 Aligned_cols=149 Identities=20% Similarity=0.260 Sum_probs=101.8
Q ss_pred cceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccch-Hhhccccccceeccce
Q 042184 11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMVYQY 88 (261)
Q Consensus 11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~ 88 (261)
-+.++.+++.+..+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3567777777777776554 7788888888888844 5667788888888888888886654 3577888888888888
Q ss_pred ecccCchhhhhhhhhcC-CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEE
Q 042184 89 YFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIV 166 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 166 (261)
++++ ++ ..+..+++|+.|++++| ...++..+..+++|+.|++++ +......+..+..+++|++|++
T Consensus 99 ~l~~-----------l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 99 QLTV-----------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCCC-----------CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCc-----------cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEe
Confidence 6652 33 34567778888888777 444555566667777777766 2222222234566667777777
Q ss_pred eeccccc
Q 042184 167 LMKSKEE 173 (261)
Q Consensus 167 ~~n~~~~ 173 (261)
++|.+..
T Consensus 167 ~~N~~~c 173 (229)
T 3e6j_A 167 FGNPWDC 173 (229)
T ss_dssp TTSCBCT
T ss_pred eCCCccC
Confidence 7766543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=9.3e-16 Score=126.83 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=78.3
Q ss_pred ccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchH-hh-ccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184 34 LHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVE-IR-NLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL 111 (261)
Q Consensus 34 L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (261)
-+.++++++.++.+|..+. ..+++|++++|.++.++.. +. .+++|++|++++|++++ ..+..+..+
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~----------i~~~~~~~l 87 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF----------ISSEAFVPV 87 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE----------ECTTTTTTC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc----------cChhhccCC
Confidence 3678899988888887653 5689999999998866544 44 78899999999997653 223457778
Q ss_pred CCCCeEecccc-chH-HHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccc
Q 042184 112 TNLQKLCIIEA-DSE-VLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKE 172 (261)
Q Consensus 112 ~~L~~L~l~~~-~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 172 (261)
++|+.|++++| ... .+..+..+++|+.|++++ +......+..+..+++|++|++++|.+.
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCC
Confidence 88888888776 222 222344455555555544 2222222334444444444444444443
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.3e-15 Score=109.97 Aligned_cols=126 Identities=21% Similarity=0.151 Sum_probs=103.3
Q ss_pred CccccceeecCCCCCC--CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccc-cchHhhccccccce
Q 042184 7 NFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE-LPVEIRNLKKLRYL 83 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L 83 (261)
..+++++|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 7888888999999999999999876 678899999999999999985 77777789999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH----HHHhccccccEEEee
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL----KELMKLRQLRKLSIR 142 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~----~~l~~~~~L~~L~l~ 142 (261)
++++|.+++ ...+..+..+++|+.|++++| ....+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~---------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKD---------LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCS---------HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCC---------hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999998753 123367788899999999988 22222 467788888888764
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2e-15 Score=111.16 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=97.8
Q ss_pred CccccceeecCCCCCC--CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccc-cchHhhccccccce
Q 042184 7 NFKLMKVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRE-LPVEIRNLKKLRYL 83 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L 83 (261)
..++|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3478999999999988 7888888899999999999998866 678889999999999999885 77777779999999
Q ss_pred eccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH----HHHhccccccEEEeec
Q 042184 84 MVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL----KELMKLRQLRKLSIRP 143 (261)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~----~~l~~~~~L~~L~l~~ 143 (261)
++++|.+++ . ..+..+..+++|+.|++++| ....+ ..+..+++|+.|++.+
T Consensus 101 ~Ls~N~l~~--------~-~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLSGNKLKD--------I-STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECBSSSCCS--------S-GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred eccCCccCc--------c-hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 999997753 1 12256777888888888877 22222 2455566666666555
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=3.6e-15 Score=110.74 Aligned_cols=128 Identities=18% Similarity=0.276 Sum_probs=102.7
Q ss_pred ccccCccccceeecCCCCCCCCcccccCc-ccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHh-hccccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYLPEGVGSL-LNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEI-RNLKKL 80 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L 80 (261)
..+.++++|++|++++|.+..++. +..+ ++|+.|++++|.++.+ ..+..+++|++|++++|.+..++..+ ..+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 456788999999999999997765 4444 4999999999999977 57889999999999999999776544 889999
Q ss_pred cceeccceecccCchhhhhhhhhcCC--cccCCCCCCeEecccc-chHHHH----HHhccccccEEEeec
Q 042184 81 RYLMVYQYYFTSGSSIAEEAAAKLHP--GFGSLTNLQKLCIIEA-DSEVLK----ELMKLRQLRKLSIRP 143 (261)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~-~~~~~~----~l~~~~~L~~L~l~~ 143 (261)
++|++++|.++ .++. .+..+++|+.|++++| ....+. .+..+++|+.|++.+
T Consensus 91 ~~L~L~~N~i~-----------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 91 TELILTNNSLV-----------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CEEECCSCCCC-----------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CEEECCCCcCC-----------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 99999999764 3444 6778889999999888 333333 477777888887766
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=9e-17 Score=140.05 Aligned_cols=198 Identities=17% Similarity=0.187 Sum_probs=156.0
Q ss_pred cCcccccEEEecCCCceecccccCCCCCCcEEeCCCCc-------------cc-ccchHhhcccccccee-ccceecccC
Q 042184 29 GSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTL-------------VR-ELPVEIRNLKKLRYLM-VYQYYFTSG 93 (261)
Q Consensus 29 ~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~-------------~~-~~~~~~~~l~~L~~L~-l~~~~~~~~ 93 (261)
+.+++|+.|++++|.++.+|..++.+++|+.|++++|. .. ..|..+..+++|+.|+ ++.+.+...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56789999999999999999999999999999997764 22 4556778899999999 777754321
Q ss_pred --chhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecc
Q 042184 94 --SSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKS 170 (261)
Q Consensus 94 --~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 170 (261)
..+..+.+..++. ..|+.|++++| ...++. ++.+++|+.|++++ +....+|..++.+++|++|++++|.
T Consensus 426 ~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 426 RSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH--NRLRALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hhhhhhcccccccCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCc--ccccccchhhhcCCCCCEEECCCCC
Confidence 1112222333332 25999999999 444555 89999999999998 3333778899999999999999999
Q ss_pred cccccccccccCCccccceEEEec-cCcCC--CccccCCCcccEEEeccCCCCCChh---HHhccCCcccceEe
Q 042184 171 KEEVLDLQSLSNPPQYLQRLYFKG-DMKKL--PDWIFKPKNVIRLGLDLSGLTEDPI---RVLHALPNLLQLRL 238 (261)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l--~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 238 (261)
+.+. + .+..++ +|++|++++ .++.+ |..++.+++|+.|++++|.+++.++ ..+..+|+|+.|++
T Consensus 498 l~~l-p--~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 498 LENV-D--GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-G--GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-c--ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8863 3 588899 999999999 99977 8889999999999999999887533 34456899999874
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=4.9e-15 Score=113.99 Aligned_cols=125 Identities=20% Similarity=0.322 Sum_probs=107.3
Q ss_pred cccceeecCCCCCCCCc-ccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184 9 KLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 85 (261)
+++++|++++|.+..++ ..+..+++|+.|++++|.++. .|..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 57999999999999655 478899999999999999994 477899999999999999999977765 578999999999
Q ss_pred cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeec
Q 042184 86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~ 143 (261)
++|.+++ ..+..+..+++|+.|++++| ....+..+..+++|+.|++.+
T Consensus 112 ~~N~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 112 NANKINC----------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCC----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCE----------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 9998764 34567889999999999999 333345578899999999988
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=2.3e-15 Score=124.44 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=75.6
Q ss_pred ceeecCCCCCCCCcccccCcccccEEEecCCCceecccc-cC-CCCCCcEEeCCCCcccccc-hHhhccccccceeccce
Q 042184 12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKS-IG-NLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQY 88 (261)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-l~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~ 88 (261)
+.++++++.++.+|..+. ..++.|++++|.++.++.. +. .+++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 355566666655554433 3456666666666644332 33 5666666666666666443 34555666666666666
Q ss_pred ecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHH-H---hCCCCCc
Q 042184 89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVL-I---ANLENLE 162 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-l---~~~~~L~ 162 (261)
+++. ..+..+..+++|+.|++++| ....+..+..+++|+.|++++ +....++.. + ..+++|+
T Consensus 99 ~l~~----------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~--N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 99 HLHT----------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ--NQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCCE----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCCSCCGGGTC----CTTCC
T ss_pred cCCc----------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC--CcCCeeCHHHhcCcccCCcCC
Confidence 5432 11224555666666666666 222334455566666666655 111122222 1 3455666
Q ss_pred eEEEeecccc
Q 042184 163 NLIVLMKSKE 172 (261)
Q Consensus 163 ~L~l~~n~~~ 172 (261)
+|++++|.+.
T Consensus 167 ~L~L~~N~l~ 176 (361)
T 2xot_A 167 LLDLSSNKLK 176 (361)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 6666666554
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=4e-15 Score=115.22 Aligned_cols=152 Identities=17% Similarity=0.147 Sum_probs=104.4
Q ss_pred CCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHH-HHHHhc
Q 042184 55 LGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEV-LKELMK 132 (261)
Q Consensus 55 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~-~~~l~~ 132 (261)
...+.++.+++.+..+|..+. ++|++|++++|.+++ ..+..+..+++|+.|++++| ...+ +..+..
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~----------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITK----------LEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred EeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCc----------cCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence 456788898888888876543 789999999997764 33567788888999998888 3333 234567
Q ss_pred cccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEEEec-cCcCCCc-cccCCCccc
Q 042184 133 LRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKG-DMKKLPD-WIFKPKNVI 210 (261)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~l~~l~~-~~~~~~~L~ 210 (261)
+++|+.|++++ +......+..+..+++|++|++++|.+.. .+ ..+..++ +|++|++++ .++.++. .+..+++|+
T Consensus 87 l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp-~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 87 LTQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LP-RGIERLT-HLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCS-CC-TTGGGCT-TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcCEEECCC-CcCCccChhHhCcchhhCeEeccCCcccc-cC-cccccCC-CCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 77788887776 23333333445677777777777777663 23 2356666 777777777 7776654 355677777
Q ss_pred EEEeccCCCCCC
Q 042184 211 RLGLDLSGLTED 222 (261)
Q Consensus 211 ~L~l~~~~~~~~ 222 (261)
.|++++|.+...
T Consensus 163 ~L~l~~N~~~c~ 174 (229)
T 3e6j_A 163 HAYLFGNPWDCE 174 (229)
T ss_dssp EEECTTSCBCTT
T ss_pred EEEeeCCCccCC
Confidence 777777777653
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=9.1e-15 Score=112.49 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=104.5
Q ss_pred ccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc--hHhhccccccceeccceecccCchhhhhhhhhcCCcccCC
Q 042184 34 LHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP--VEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSL 111 (261)
Q Consensus 34 L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (261)
-+.++++++.++.+|..+. ..+++|++++|.++.++ ..+..+++|++|++++|.+++ ..+..+..+
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~----------i~~~~~~~l 80 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD----------IEEGAFEGA 80 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE----------ECTTTTTTC
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE----------ECHHHhCCC
Confidence 3578899988888887653 45789999999888553 347788889999999886652 122356666
Q ss_pred CCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccceEE
Q 042184 112 TNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLY 191 (261)
Q Consensus 112 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 191 (261)
++|+.|++++| ......+..+..+++|++|++++|.+.+..+ ..+..++ +|++|+
T Consensus 81 ~~L~~L~Ls~N-----------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~ 135 (220)
T 2v70_A 81 SGVNEILLTSN-----------------------RLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLS-SVRLLS 135 (220)
T ss_dssp TTCCEEECCSS-----------------------CCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCT-TCSEEE
T ss_pred CCCCEEECCCC-----------------------ccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCc-cCCEEE
Confidence 66666666554 1222223345666777777777777665544 4466677 788888
Q ss_pred Eec-cCcCC-CccccCCCcccEEEeccCCCCCC
Q 042184 192 FKG-DMKKL-PDWIFKPKNVIRLGLDLSGLTED 222 (261)
Q Consensus 192 l~~-~l~~l-~~~~~~~~~L~~L~l~~~~~~~~ 222 (261)
+++ .++.+ |..+..+++|+.|++++|.+...
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 877 77755 55677788888888888877653
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2.3e-15 Score=134.91 Aligned_cols=118 Identities=28% Similarity=0.374 Sum_probs=98.6
Q ss_pred CccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184 2 NTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR 81 (261)
Q Consensus 2 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 81 (261)
+..+..++.|++|++++|.+..+|..+..+++|++|+|++|.++.+|..++.+++|++|+|++|.++.+|..+..+++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 45677889999999999999888888888999999999999999899889999999999999999998888899999999
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHH
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKEL 130 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l 130 (261)
+|++++|.++ .+|..++.+++|+.|++++| .+..+..+
T Consensus 297 ~L~L~~N~l~-----------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 297 YFYFFDNMVT-----------TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECCSSCCC-----------CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEECCCCCCC-----------ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9999999654 67888999999999999998 44444444
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=4.6e-16 Score=139.46 Aligned_cols=154 Identities=19% Similarity=0.061 Sum_probs=66.7
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEE-----ecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccccee
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLS-----LRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLM 84 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~-----l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 84 (261)
.++.|++.++.+...+..+....+|..+. +..|.+...+..+..+.+|++|++++|.+..++..+..+++|++|+
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY 253 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence 35556665555553333222222222222 2223333334445566666666666666666665556666666666
Q ss_pred ccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCce
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLEN 163 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 163 (261)
+++|.++ .+|..+..+++|+.|++++| ...+|..++.+++|+.|++++ +....+|..++.+++|++
T Consensus 254 Ls~N~l~-----------~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~--N~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 254 LNGNSLT-----------ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD--NMVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp CTTSCCS-----------CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS--SCCCCCCSSTTSCTTCCC
T ss_pred eeCCcCc-----------ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC--CCCCccChhhhcCCCccE
Confidence 6666442 45555666666666666666 334455566666666666665 222345555666666666
Q ss_pred EEEeecccccccc
Q 042184 164 LIVLMKSKEEVLD 176 (261)
Q Consensus 164 L~l~~n~~~~~~~ 176 (261)
|++++|.+.+..+
T Consensus 321 L~L~~N~l~~~~p 333 (727)
T 4b8c_D 321 LGVEGNPLEKQFL 333 (727)
T ss_dssp EECTTSCCCSHHH
T ss_pred EeCCCCccCCCCh
Confidence 6666666654433
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=1.9e-14 Score=105.89 Aligned_cols=110 Identities=19% Similarity=0.264 Sum_probs=96.7
Q ss_pred CCccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCcccccc--hHhhcc
Q 042184 1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVRELP--VEIRNL 77 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l 77 (261)
+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++.++ ..+..+
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 119 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC
Confidence 466788999999999999999977 778899999999999999995 7777777999999999999999765 678899
Q ss_pred ccccceeccceecccCchhhhhhhhhcCC----cccCCCCCCeEecccc
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHP----GFGSLTNLQKLCIIEA 122 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~ 122 (261)
++|++|++++|.++ ..+. .+..+++|+.|++++|
T Consensus 120 ~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 120 ECLKSLDLFNCEVT-----------NLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SCCCEEECCSSGGG-----------TSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCEEEeeCCcCc-----------chHHHHHHHHHhCccCcEecCCCC
Confidence 99999999999665 4454 7889999999999887
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.7e-14 Score=104.01 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=94.2
Q ss_pred CCccccCccccceeecCCCCCCCCcccccCcccccEEEecCCCcee-cccccCCCCCCcEEeCCCCcccccc--hHhhcc
Q 042184 1 MNTSIANFKLMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKI-IPKSIGNLLGLESLDLKNTLVRELP--VEIRNL 77 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l 77 (261)
+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++.++ ..+..+
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence 466788999999999999999977 778899999999999999995 8877778999999999999998654 778999
Q ss_pred ccccceeccceecccCchhhhhhhhhcCC----cccCCCCCCeEeccc
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHP----GFGSLTNLQKLCIIE 121 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~L~~L~l~~ 121 (261)
++|++|++++|.++ ..+. .+..+++|+.|++++
T Consensus 113 ~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 113 ENLKSLDLFNCEVT-----------NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTCGGG-----------GSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEeCcCCccc-----------chHHHHHHHHHHCCCcccccCCC
Confidence 99999999999765 3443 678899999998763
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=9.3e-14 Score=113.36 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=45.9
Q ss_pred ccccceeecCCCCCC--------------------CCc-ccccC--------cccccEEEecCCCceeccc-ccCCCCCC
Q 042184 8 FKLMKVLDLEDAPVV--------------------YLP-EGVGS--------LLNLHYLSLRNKKVKIIPK-SIGNLLGL 57 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~--------------------~~~-~~~~~--------l~~L~~L~l~~~~i~~~~~-~l~~l~~L 57 (261)
+++|++||+++|.+. .+| ..|.+ |++|+.+++.+ .++.+++ ++.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999998776 112 23344 66666666666 5554443 35666667
Q ss_pred cEEeCCCCcccccc-hHhhccccccceeccc
Q 042184 58 ESLDLKNTLVRELP-VEIRNLKKLRYLMVYQ 87 (261)
Q Consensus 58 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~ 87 (261)
++++++.|.+..++ ..+..+.++..+....
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77777666655332 2344455555554433
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=9.1e-16 Score=116.16 Aligned_cols=150 Identities=20% Similarity=0.225 Sum_probs=114.2
Q ss_pred CccccceeecCCCCCC-------CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccc
Q 042184 7 NFKLMKVLDLEDAPVV-------YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKK 79 (261)
Q Consensus 7 ~~~~L~~L~l~~~~l~-------~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 79 (261)
..+.++.++++.+.+. .+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 3455556666655544 34448888999999999999998887 788899999999999999988888888899
Q ss_pred ccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chH--HHHHHhccccccEEEeeccCCCccch-----
Q 042184 80 LRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSE--VLKELMKLRQLRKLSIRPQNGNGKDL----- 151 (261)
Q Consensus 80 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~----- 151 (261)
|++|++++|.+++ ++ .+..+++|+.|++++| ... ....+..+++|+.|++.+ +......
T Consensus 95 L~~L~L~~N~l~~-----------l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~ 161 (198)
T 1ds9_A 95 LEELWISYNQIAS-----------LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG-NPLYNDYKENNA 161 (198)
T ss_dssp CSEEEEEEEECCC-----------HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS-CHHHHHHHTTTT
T ss_pred CCEEECcCCcCCc-----------CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC-Cccccccccccc
Confidence 9999999998763 33 5777889999999999 333 235788999999999987 2222221
Q ss_pred -----HHHHhCCCCCceEEEeecccc
Q 042184 152 -----CVLIANLENLENLIVLMKSKE 172 (261)
Q Consensus 152 -----~~~l~~~~~L~~L~l~~n~~~ 172 (261)
...+..+++|++|+ ++.+.
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred hHHHHHHHHHhCCCcEEEC--CcccC
Confidence 22478889999987 55443
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.7e-15 Score=114.66 Aligned_cols=134 Identities=17% Similarity=0.201 Sum_probs=102.6
Q ss_pred ceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-
Q 042184 44 VKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA- 122 (261)
Q Consensus 44 i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~- 122 (261)
++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-----------~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-----------KIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-----------SCSSHHHHHHHCSEEEEEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-----------cccchhhcCCcCCEEECcCCc
Confidence 4455557888999999999999998887 7888999999999999764 56777777789999999999
Q ss_pred chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeeccccccccc---------ccccCCccccceEE
Q 042184 123 DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDL---------QSLSNPPQYLQRLY 191 (261)
Q Consensus 123 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~---------~~~~~~~~~L~~L~ 191 (261)
...++ .+..+++|+.|+++++..........+..+++|++|++++|.+.+..+. ..+..++ +|+.|+
T Consensus 105 l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~-~L~~Ld 180 (198)
T 1ds9_A 105 IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP-NLKKLD 180 (198)
T ss_dssp CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS-SCSEEC
T ss_pred CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC-CcEEEC
Confidence 33344 6888999999999882222112224788899999999999987654321 2256778 899886
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=7.7e-14 Score=104.98 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=87.7
Q ss_pred ceeecCCCCCCCCcccccCcccccEEEecCCCceeccc--ccCCCCCCcEEeCCCCccccc-chHhhccccccceeccce
Q 042184 12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK--SIGNLLGLESLDLKNTLVREL-PVEIRNLKKLRYLMVYQY 88 (261)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~ 88 (261)
+++++++++++.+|..+. .+++.|++++|.++.++. .+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 678888888888887654 388899999988886654 377888999999999888854 667888888999999988
Q ss_pred ecccCchhhhhhhhhcCCcccCCCCCCeEecccc--chHHHHHHhccccccEEEeec
Q 042184 89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DSEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~ 143 (261)
++++ ..+..+..+++|+.|++++| ....+..+..+++|+.|++++
T Consensus 89 ~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 KIKE----------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCE----------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCCc----------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 7653 23345677788888887777 333344455555666666555
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=2.3e-13 Score=102.34 Aligned_cols=103 Identities=20% Similarity=0.295 Sum_probs=90.8
Q ss_pred ccceeecCCCCCCCCcc--cccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccc-hHhhccccccceec
Q 042184 10 LMKVLDLEDAPVVYLPE--GVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMV 85 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l 85 (261)
++++|++++|.+..++. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 89999999999997664 388999999999999999944 778999999999999999999554 45888999999999
Q ss_pred cceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 86 YQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
++|++++ ..+..+..+++|+.|++++|
T Consensus 110 ~~N~l~~----------~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 110 YDNQISC----------VMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CSSCCCE----------ECTTSSTTCTTCCEEECTTC
T ss_pred CCCcCCe----------eCHHHhhcCCCCCEEEeCCC
Confidence 9998764 45678889999999999998
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=5.9e-13 Score=100.18 Aligned_cols=120 Identities=23% Similarity=0.309 Sum_probs=93.6
Q ss_pred ceeecCCCCCCCCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccceec
Q 042184 12 KVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQYYF 90 (261)
Q Consensus 12 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 90 (261)
++++++++.++.+|..+. ++|+.|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578888888888876553 6788899999888888888888889999999998888654 4578888899999998876
Q ss_pred ccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH-HHHhccccccEEEeec
Q 042184 91 TSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL-KELMKLRQLRKLSIRP 143 (261)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~-~~l~~~~~L~~L~l~~ 143 (261)
+. ..+..+..+++|+.|++++| ...++ ..+..+++|+.|++.+
T Consensus 91 ~~----------i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RC----------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CB----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CE----------eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 53 23346788888999999888 33333 3477788888898887
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=102.08 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=64.0
Q ss_pred cEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCC
Q 042184 35 HYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNL 114 (261)
Q Consensus 35 ~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 114 (261)
++++++++.++.+|..+. ++|++|++++|.++.+|..+..+++|++|++++|.+++ ..+..+..+++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~----------i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST----------LSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC----------CCTTTTTTCTTC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE----------eCHhHccCCCCC
Confidence 345555555555554432 45666666666555555555556666666666654432 122345555566
Q ss_pred CeEecccc--chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccc
Q 042184 115 QKLCIIEA--DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKE 172 (261)
Q Consensus 115 ~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 172 (261)
+.|++++| ....+..+..+++|+.|++++ +......+..+..+++|++|++++|.+.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66666555 222233455555666666655 2222222223455555666666655443
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=8e-14 Score=103.39 Aligned_cols=131 Identities=19% Similarity=0.251 Sum_probs=88.7
Q ss_pred cccCcccccEEEecCCCceecccccCCC-CCCcEEeCCCCcccccchHhhccccccceeccceecccCchhhhhhhhhcC
Q 042184 27 GVGSLLNLHYLSLRNKKVKIIPKSIGNL-LGLESLDLKNTLVRELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLH 105 (261)
Q Consensus 27 ~~~~l~~L~~L~l~~~~i~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 105 (261)
.+..+.+|+.|++++|.++.++. +..+ ++|++|++++|.++.+ ..+..+++|++|++++|.++ .++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-----------~~~ 80 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-----------RIG 80 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-----------EEC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-----------ccC
Confidence 34567888888888888887654 3444 4888888888888766 56777888888888888654 345
Q ss_pred Ccc-cCCCCCCeEecccc-chHHHH--HHhccccccEEEeeccCCCccchHH----HHhCCCCCceEEEeecccc
Q 042184 106 PGF-GSLTNLQKLCIIEA-DSEVLK--ELMKLRQLRKLSIRPQNGNGKDLCV----LIANLENLENLIVLMKSKE 172 (261)
Q Consensus 106 ~~~-~~~~~L~~L~l~~~-~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~n~~~ 172 (261)
+.+ ..+++|+.|++++| ...++. .+..+++|+.|++++ +.....+. .+..+++|+.|++++|...
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~--N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR--NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS--SGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC--CCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 443 67778888888777 333333 566777777777776 22223333 3666777777777776543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=1.2e-12 Score=106.85 Aligned_cols=219 Identities=15% Similarity=0.153 Sum_probs=119.7
Q ss_pred ccccceeecCCCCCCCCcccccC-cccccEEEecCCCce--------------------eccc-ccCC--------CCCC
Q 042184 8 FKLMKVLDLEDAPVVYLPEGVGS-LLNLHYLSLRNKKVK--------------------IIPK-SIGN--------LLGL 57 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~~~~~~~~~-l~~L~~L~l~~~~i~--------------------~~~~-~l~~--------l~~L 57 (261)
+.+++.|.++++--..-...+.. +++|+.|++++|++. .+|+ .+.+ +.+|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 56788888876521111122233 788999999999876 3333 3456 8999
Q ss_pred cEEeCCCCcccccch-HhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--------------
Q 042184 58 ESLDLKNTLVRELPV-EIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-------------- 122 (261)
Q Consensus 58 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-------------- 122 (261)
++|++.. .++.++. .+..|++|+.++++.|.++. --+.++..+.++..+.....
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~----------i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN----------LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE----------ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccc----------cchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 9999988 7776644 57889999999999886532 12234445555554443331
Q ss_pred --------------chHHHHHHh----ccccccEEEeeccCCCccchHHHH-hCCCCCceEEEeecccccccccccccCC
Q 042184 123 --------------DSEVLKELM----KLRQLRKLSIRPQNGNGKDLCVLI-ANLENLENLIVLMKSKEEVLDLQSLSNP 183 (261)
Q Consensus 123 --------------~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 183 (261)
...++..+. ...++..+.+.+ .........+ ..+++|+++++++|.+..... ..|..+
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~-~aF~~~ 249 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPD-FTFAQK 249 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBCCCEECT-TTTTTC
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCCcceecH-hhhhCC
Confidence 001111110 123334444433 1111111122 235666666666655443322 446666
Q ss_pred ccccceEEEeccCcCCCcc-ccCCCccc-EEEeccCCCCCChhHHhccCCcccceEec-ccc
Q 042184 184 PQYLQRLYFKGDMKKLPDW-IFKPKNVI-RLGLDLSGLTEDPIRVLHALPNLLQLRLA-GTY 242 (261)
Q Consensus 184 ~~~L~~L~l~~~l~~l~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-n~~ 242 (261)
+ +|+.+++.++++.++.. +..|.+|+ .+++.. .++.....++.+|++|+.+++. |.+
T Consensus 250 ~-~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 250 K-YLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp T-TCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred C-CCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 6 66666666555544433 44566666 666655 4443334455666666666665 544
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.6e-13 Score=111.48 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=68.4
Q ss_pred cccceeecCCCCCCC-----Cccccc-CcccccEEEecCCCce-e-cccccCCCCCCcEEeCCCCcccc-----cchHh-
Q 042184 9 KLMKVLDLEDAPVVY-----LPEGVG-SLLNLHYLSLRNKKVK-I-IPKSIGNLLGLESLDLKNTLVRE-----LPVEI- 74 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~-----~~~~~~-~l~~L~~L~l~~~~i~-~-~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~- 74 (261)
+.|++|++++|.++. +...+. ..++|+.|++++|.++ . +......+.+|++|++++|.++. +...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345556666655551 111111 1245555565555554 1 11111223455555555555541 11111
Q ss_pred hccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHHHhccccccEEEeeccCCCc
Q 042184 75 RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKELMKLRQLRKLSIRPQNGNG 148 (261)
Q Consensus 75 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~l~~~~~L~~L~l~~~~~~~ 148 (261)
...++|++|++++|.++.. ....++..+..+++|+.|++++| .. .+...+...++|+.|+++++....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAA------GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHH------HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChH------HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 1234555555555554321 22333444445555555555555 11 123334444555555555421111
Q ss_pred c---chHHHHhCCCCCceEEEeecccc
Q 042184 149 K---DLCVLIANLENLENLIVLMKSKE 172 (261)
Q Consensus 149 ~---~~~~~l~~~~~L~~L~l~~n~~~ 172 (261)
. .+...+...++|++|++++|.+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 22333344455555555555443
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=7.4e-12 Score=92.75 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=78.8
Q ss_pred cceeecCCCCCCCCcccccCcccccEEEecCCCceeccc-ccCCCCCCcEEeCCCCcccccchH-hhccccccceeccce
Q 042184 11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKIIPK-SIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQY 88 (261)
Q Consensus 11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 88 (261)
.+.++++++++..+|..+. ++|+.|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4667777777777765443 678888888888775554 356778888888888887765543 567788888888888
Q ss_pred ecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHH-HHHhccccccEEEeec
Q 042184 89 YFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVL-KELMKLRQLRKLSIRP 143 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~-~~l~~~~~L~~L~l~~ 143 (261)
.+++ ..+..+..+++|+.|++++| ...++ ..+..+++|+.|++++
T Consensus 87 ~l~~----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 87 KLQS----------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCC----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred Cccc----------cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 6642 12233566777777777766 22222 2234555666666655
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.30 E-value=2e-11 Score=102.03 Aligned_cols=218 Identities=11% Similarity=0.109 Sum_probs=125.6
Q ss_pred cccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184 4 SIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR 81 (261)
Q Consensus 4 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 81 (261)
+|.++ +|+.+.+..+ +..+. ..|.++ +|+.+.+.+ .++.++ ..+.+|.+|+.+++..|.++.++...-.+.+|+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 45554 5777777655 44333 344453 577777765 455444 346777888888887777776655444466777
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCC
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLEN 160 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 160 (261)
.+.+..+ ++ .--..++..|++|+.+.+..+ .......+.. .+|+.+.+.. .....-...+..|++
T Consensus 207 ~l~lp~~-l~----------~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 207 EVLLPVT-LK----------EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPE 272 (401)
T ss_dssp EEECCTT-CC----------EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTT
T ss_pred EEEeCCc-hh----------eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCC
Confidence 7777643 21 112345667777777777665 1111222333 4677777744 222222445667777
Q ss_pred CceEEEeecccc----cccccccccCCccccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccc
Q 042184 161 LENLIVLMKSKE----EVLDLQSLSNPPQYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQ 235 (261)
Q Consensus 161 L~~L~l~~n~~~----~~~~~~~~~~~~~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 235 (261)
|+.+++.++... ..++-..+..++ +|+.+.+..+++.++. .+..|.+|+.+.+..+ ++.....++.+| +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 777777765432 012224466676 7777777665554443 3445677777777544 333333455666 7777
Q ss_pred eEec-ccc
Q 042184 236 LRLA-GTY 242 (261)
Q Consensus 236 L~l~-n~~ 242 (261)
+++. |.+
T Consensus 350 l~l~~n~~ 357 (401)
T 4fdw_A 350 VKVEGTTP 357 (401)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 7776 543
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=1.4e-11 Score=91.22 Aligned_cols=104 Identities=26% Similarity=0.360 Sum_probs=88.8
Q ss_pred ccccceeecCCCCCCCCcc-cccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccch-Hhhcccccccee
Q 042184 8 FKLMKVLDLEDAPVVYLPE-GVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLM 84 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 84 (261)
.++|++|++++|.+..++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3689999999999996664 568899999999999999976654 6899999999999999997665 467899999999
Q ss_pred ccceecccCchhhhhhhhhcCCc-ccCCCCCCeEecccc
Q 042184 85 VYQYYFTSGSSIAEEAAAKLHPG-FGSLTNLQKLCIIEA 122 (261)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 122 (261)
+++|.++ .++.. +..+++|+.|++++|
T Consensus 107 l~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 107 LDTNQLK-----------SVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCSSCCS-----------CCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCcce-----------EeCHHHhcCCcccCEEEecCC
Confidence 9999775 34444 578999999999999
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.3e-11 Score=90.83 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=85.3
Q ss_pred ccceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceeccc
Q 042184 10 LMKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQ 87 (261)
Q Consensus 10 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 87 (261)
..++++++++.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35789999999999887664 8899999999999965 56688999999999999999977664 57899999999999
Q ss_pred eecccCchhhhhhhhhcCC-cccCCCCCCeEecccc
Q 042184 88 YYFTSGSSIAEEAAAKLHP-GFGSLTNLQKLCIIEA 122 (261)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~ 122 (261)
|+++ .++. .+..+++|+.|++++|
T Consensus 88 N~l~-----------~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLK-----------SIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCC-----------CCCTTTTTTCTTCCEEECCSS
T ss_pred CccC-----------EeCHHHhcCCCCCCEEEeCCC
Confidence 9775 3444 5888999999999998
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=1.5e-11 Score=90.95 Aligned_cols=99 Identities=16% Similarity=0.354 Sum_probs=84.5
Q ss_pred cceeecCCCCCCCCcccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchH-hhccccccceeccce
Q 042184 11 MKVLDLEDAPVVYLPEGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMVYQY 88 (261)
Q Consensus 11 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 88 (261)
-+.++++++.+..+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3679999999998887664 8899999999999955 56788999999999999999987765 578999999999999
Q ss_pred ecccCchhhhhhhhhcCC-cccCCCCCCeEecccc
Q 042184 89 YFTSGSSIAEEAAAKLHP-GFGSLTNLQKLCIIEA 122 (261)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~ 122 (261)
+++ .++. .+..+++|+.|++++|
T Consensus 92 ~l~-----------~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLK-----------SIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCC-----------CCCTTTTTTCTTCSEEECCSS
T ss_pred ccc-----------eeCHHHhccccCCCEEEeCCC
Confidence 765 4555 4888999999999988
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.26 E-value=5.7e-11 Score=99.27 Aligned_cols=220 Identities=11% Similarity=0.112 Sum_probs=158.6
Q ss_pred ccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccc-hHhhccccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELP-VEIRNLKKL 80 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L 80 (261)
.+|.++ +|+.+.+.. .+..+. ..|.+|++|+.+++.+|.++.++.....+.+|+.+.+..+ +..++ ..+..|++|
T Consensus 152 ~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L 228 (401)
T 4fdw_A 152 MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQL 228 (401)
T ss_dssp TTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTC
T ss_pred HhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCC
Confidence 356665 689999886 566444 5788999999999999999988776555799999999855 55443 467889999
Q ss_pred cceeccceecccCchhhhhhhhhcC-CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCC----ccchHHH
Q 042184 81 RYLMVYQYYFTSGSSIAEEAAAKLH-PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGN----GKDLCVL 154 (261)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~ 154 (261)
+.+.+..+ ++ .++ .++.. .+|+.+.+..+ .......+..+++|+.+.+.++... .......
T Consensus 229 ~~l~l~~~-l~-----------~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 229 KTIEIPEN-VS-----------TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp CCEECCTT-CC-----------EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred CEEecCCC-cc-----------Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 99999874 22 333 34444 68999999766 3334556888999999999772111 1233457
Q ss_pred HhCCCCCceEEEeecccccccccccccCCccccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCC-c
Q 042184 155 IANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALP-N 232 (261)
Q Consensus 155 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~ 232 (261)
+..|++|+.+++..+ +. .+....|..+. +|+.+.+..+++.+.. .+..| +|+.+.+.+|.........+.+++ +
T Consensus 296 F~~c~~L~~l~l~~~-i~-~I~~~aF~~c~-~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 296 LEGCPKLARFEIPES-IR-ILGQGLLGGNR-KVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDD 371 (401)
T ss_dssp TTTCTTCCEECCCTT-CC-EECTTTTTTCC-SCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTT
T ss_pred hhCCccCCeEEeCCc-eE-EEhhhhhcCCC-CccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCC
Confidence 889999999999853 33 33335688888 9999999667776654 46668 999999999976654444555664 7
Q ss_pred ccceEec-ccc
Q 042184 233 LLQLRLA-GTY 242 (261)
Q Consensus 233 L~~L~l~-n~~ 242 (261)
++.+.+- +.+
T Consensus 372 l~~l~vp~~~~ 382 (401)
T 4fdw_A 372 ITVIRVPAESV 382 (401)
T ss_dssp CCEEEECGGGH
T ss_pred ccEEEeCHHHH
Confidence 7888887 543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=2.6e-11 Score=89.56 Aligned_cols=83 Identities=27% Similarity=0.416 Sum_probs=74.6
Q ss_pred cccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccchH-hhccccccceec
Q 042184 9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPVE-IRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 85 (261)
++|++|++++|.+..+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..++.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 7899999999999966 57889999999999999999988765 58999999999999999987765 888999999999
Q ss_pred cceecc
Q 042184 86 YQYYFT 91 (261)
Q Consensus 86 ~~~~~~ 91 (261)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 999764
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=5.4e-11 Score=87.51 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=74.1
Q ss_pred cccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCcccccch-Hhhccccccceec
Q 042184 9 KLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVRELPV-EIRNLKKLRYLMV 85 (261)
Q Consensus 9 ~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 85 (261)
++|++|++++|.++.+ +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..++. .+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 7899999999999966 57789999999999999999977765 6899999999999999997766 4889999999999
Q ss_pred cceecc
Q 042184 86 YQYYFT 91 (261)
Q Consensus 86 ~~~~~~ 91 (261)
++|.++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 999764
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=101.69 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=105.1
Q ss_pred ccccceeecCCCCCC-C-CcccccCcccccEEEecCCCceec-cc----cc-CCCCCCcEEeCCCCccc-----ccchHh
Q 042184 8 FKLMKVLDLEDAPVV-Y-LPEGVGSLLNLHYLSLRNKKVKII-PK----SI-GNLLGLESLDLKNTLVR-----ELPVEI 74 (261)
Q Consensus 8 ~~~L~~L~l~~~~l~-~-~~~~~~~l~~L~~L~l~~~~i~~~-~~----~l-~~l~~L~~L~l~~~~~~-----~~~~~~ 74 (261)
.++|++|++++|.+. . +......+++|+.|++++|.++.. .. .+ ...++|++|++++|.++ .++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 379999999999988 2 223233567899999999998722 12 22 35789999999999987 245566
Q ss_pred hccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc--ch----HHHHHHhccccccEEEeeccCCCc
Q 042184 75 RNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA--DS----EVLKELMKLRQLRKLSIRPQNGNG 148 (261)
Q Consensus 75 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--~~----~~~~~l~~~~~L~~L~l~~~~~~~ 148 (261)
..+++|++|++++|.++.. ....++..+...++|+.|++++| .. .+...+...++|+.|++++ +...
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~------g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~-N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDE------GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF-NELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHH------HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTT-SSCC
T ss_pred hcCCCcCEEeCCCCCCCcH------HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccC-CCCC
Confidence 7899999999999988642 34456677788889999999999 32 3455677789999999998 3344
Q ss_pred cchHHHHhC
Q 042184 149 KDLCVLIAN 157 (261)
Q Consensus 149 ~~~~~~l~~ 157 (261)
..-...+..
T Consensus 253 ~~g~~~L~~ 261 (372)
T 3un9_A 253 SEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=5.1e-10 Score=91.76 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=78.9
Q ss_pred ceeecCCC-CCCCCcccccCcccccEEEecC-CCceecc-cccCCCCCCcEEeCCCCcccccc-hHhhccccccceeccc
Q 042184 12 KVLDLEDA-PVVYLPEGVGSLLNLHYLSLRN-KKVKIIP-KSIGNLLGLESLDLKNTLVRELP-VEIRNLKKLRYLMVYQ 87 (261)
Q Consensus 12 ~~L~l~~~-~l~~~~~~~~~l~~L~~L~l~~-~~i~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~ 87 (261)
..++.+++ ++..+|. +..+++|+.|+|++ |.++.++ ..+..+++|++|+|++|.++.++ ..+..+++|++|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688887 8888888 88899999999986 8898666 56889999999999999988554 4678899999999999
Q ss_pred eecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 88 YYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
|+++ .+|........|+.|++.+|
T Consensus 90 N~l~-----------~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 NALE-----------SLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCS-----------CCCSTTTCSCCCCEEECCSS
T ss_pred Cccc-----------eeCHHHcccCCceEEEeeCC
Confidence 9775 35544333334999999888
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1.2e-09 Score=89.58 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=75.9
Q ss_pred CCccccCccccceeecCC-CCCCCCc-ccccCcccccEEEecCCCceec-ccccCCCCCCcEEeCCCCcccccchHhhcc
Q 042184 1 MNTSIANFKLMKVLDLED-APVVYLP-EGVGSLLNLHYLSLRNKKVKII-PKSIGNLLGLESLDLKNTLVRELPVEIRNL 77 (261)
Q Consensus 1 ~~~~~~~~~~L~~L~l~~-~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 77 (261)
||. |..+++|++|++++ |.+..++ ..+.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.+..+|......
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 566 88899999999996 8999665 6789999999999999999954 456889999999999999999877655444
Q ss_pred ccccceeccceecc
Q 042184 78 KKLRYLMVYQYYFT 91 (261)
Q Consensus 78 ~~L~~L~l~~~~~~ 91 (261)
.+|+.|++.+|.+.
T Consensus 103 ~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LSLQELVLSGNPLH 116 (347)
T ss_dssp CCCCEEECCSSCCC
T ss_pred CCceEEEeeCCCcc
Confidence 44999999999775
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=5.9e-10 Score=91.68 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=111.6
Q ss_pred cCCCCCCcEEeCCCCccc----------ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecc
Q 042184 51 IGNLLGLESLDLKNTLVR----------ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII 120 (261)
Q Consensus 51 l~~l~~L~~L~l~~~~~~----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 120 (261)
+..+++|+.|.+.+.... .+...+..+|+|+.|+++++. ...++. +. +++|+.|++.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~-----------~l~l~~-~~-~~~L~~L~L~ 201 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-----------NLSIGK-KP-RPNLKSLEII 201 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB-----------TCBCCS-CB-CTTCSEEEEE
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC-----------Cceecc-cc-CCCCcEEEEe
Confidence 445677888877543221 244556778999999998762 113333 33 7889999998
Q ss_pred cc--chHHHHHHh--ccccccEEEeecc-CC-C----ccchHHHH--hCCCCCceEEEeecccccccc--cccccCCccc
Q 042184 121 EA--DSEVLKELM--KLRQLRKLSIRPQ-NG-N----GKDLCVLI--ANLENLENLIVLMKSKEEVLD--LQSLSNPPQY 186 (261)
Q Consensus 121 ~~--~~~~~~~l~--~~~~L~~L~l~~~-~~-~----~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~ 186 (261)
.+ .......++ .+|+|+.|++... +. . ...+...+ ..+++|++|++.+|.+..... +.....+| +
T Consensus 202 ~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~-~ 280 (362)
T 2ra8_A 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP-Q 280 (362)
T ss_dssp CSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG-G
T ss_pred cCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC-C
Confidence 77 444555555 6899999998531 11 1 11122222 357899999998887653221 11123467 8
Q ss_pred cceEEEec-cCcC-----CCccccCCCcccEEEeccCCCCCChhHHhcc-CCcccceEec-cc
Q 042184 187 LQRLYFKG-DMKK-----LPDWIFKPKNVIRLGLDLSGLTEDPIRVLHA-LPNLLQLRLA-GT 241 (261)
Q Consensus 187 L~~L~l~~-~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~-n~ 241 (261)
|++|+|+. .++. ++..+..+++|+.|++++|.+++.....+.+ + ...++++ +.
T Consensus 281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99999987 6662 4444456788999999999888766665554 3 4567887 54
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.92 E-value=1.3e-10 Score=86.61 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=80.9
Q ss_pred ccccCcccccEEEecCC-Cce-----ecccccCCCCCCcEEeCCCCccc-----ccchHhhccccccceeccceecccCc
Q 042184 26 EGVGSLLNLHYLSLRNK-KVK-----IIPKSIGNLLGLESLDLKNTLVR-----ELPVEIRNLKKLRYLMVYQYYFTSGS 94 (261)
Q Consensus 26 ~~~~~l~~L~~L~l~~~-~i~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~ 94 (261)
..+...+.|+.|++++| .+. .+...+...++|++|++++|.+. .+...+...++|++|++++|.++..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~- 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS- 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH-
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH-
Confidence 44566788888888888 775 24455667788888888888877 2445566677888999988887642
Q ss_pred hhhhhhhhhcCCcccCCCCCCeEec--ccc--ch----HHHHHHhccccccEEEeec
Q 042184 95 SIAEEAAAKLHPGFGSLTNLQKLCI--IEA--DS----EVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~L~~L~l--~~~--~~----~~~~~l~~~~~L~~L~l~~ 143 (261)
....+...+...++|+.|++ ++| .. .+...+...++|+.|++++
T Consensus 109 -----g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 109 -----GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp -----HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred -----HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 45556677777888999999 666 22 2445566778899998877
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=6.2e-09 Score=85.60 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=76.0
Q ss_pred ccCccccceeecCCCCCC----------CCcccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCccc-ccchH
Q 042184 5 IANFKLMKVLDLEDAPVV----------YLPEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVR-ELPVE 73 (261)
Q Consensus 5 ~~~~~~L~~L~l~~~~l~----------~~~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~ 73 (261)
+.++++|+.|.+.+.... .+...+..+++|+.|.++++.-..++. + .+++|++|++..+.+. .....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 445667777766543221 133334556777777776653112333 2 2667777777666655 22223
Q ss_pred hh--ccccccceeccce--ecccCchhhhhhhhhcCCcc--cCCCCCCeEecccc--chHHHHHHh---ccccccEEEee
Q 042184 74 IR--NLKKLRYLMVYQY--YFTSGSSIAEEAAAKLHPGF--GSLTNLQKLCIIEA--DSEVLKELM---KLRQLRKLSIR 142 (261)
Q Consensus 74 ~~--~l~~L~~L~l~~~--~~~~~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~--~~~~~~~l~---~~~~L~~L~l~ 142 (261)
+. .+|+|+.|+++.+ ...+. ..+..+...+ ..+++|+.|.+.+| ....+..+. .+++|++|+++
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~-----~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFD-----GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCC-----SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHccCCCCcEEEEeccccccccc-----hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 33 5677777776431 11000 0011111222 23566777776665 211222222 35566666665
Q ss_pred ccCCCccc----hHHHHhCCCCCceEEEeecccc
Q 042184 143 PQNGNGKD----LCVLIANLENLENLIVLMKSKE 172 (261)
Q Consensus 143 ~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 172 (261)
. +..... ++..+..+++|+.|++++|.+.
T Consensus 288 ~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 288 A-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp S-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred C-CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5 222221 2222334556666666665443
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=5.6e-09 Score=77.74 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=81.5
Q ss_pred cccccCCCCCCcEEeCCCC-ccc-----ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecc
Q 042184 47 IPKSIGNLLGLESLDLKNT-LVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII 120 (261)
Q Consensus 47 ~~~~l~~l~~L~~L~l~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 120 (261)
+...+...++|++|++++| .+. .+...+...++|++|++++|.++.. ....+...+...++|+.|+++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~------g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP------VAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH------HHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH------HHHHHHHHHHhCCCcCEEECc
Confidence 3345667888888988888 776 2445566678888888888877542 344556666677788888888
Q ss_pred cc--chH----HHHHHhccccccEEEe--eccCCCcc----chHHHHhCCCCCceEEEeecccc
Q 042184 121 EA--DSE----VLKELMKLRQLRKLSI--RPQNGNGK----DLCVLIANLENLENLIVLMKSKE 172 (261)
Q Consensus 121 ~~--~~~----~~~~l~~~~~L~~L~l--~~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~ 172 (261)
+| ... +...+...++|+.|++ .+ +.... .+...+...+.|++|++++|.+.
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 88 222 3455666778888888 54 22222 24556666788888888888654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.62 E-value=3.8e-07 Score=75.95 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=33.2
Q ss_pred ccccCccccceeecCCCCCCCCc-ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCC
Q 042184 3 TSIANFKLMKVLDLEDAPVVYLP-EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKN 64 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~ 64 (261)
.+|..|.+|+.+.+..+ +..+. ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..
T Consensus 108 ~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 108 QAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred hhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccc
Confidence 34666777777766554 33222 44566777777777543 22222 2345566666666554
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=1.7e-07 Score=78.15 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=72.9
Q ss_pred cccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCcc
Q 042184 107 GFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQ 185 (261)
Q Consensus 107 ~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 185 (261)
.+..+..++.+.+..+ .......+..+..++.+.... .. .....+..+.+|+.+.+..+ +. .+.-..+..+.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~--~~--i~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~- 320 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS--VI--VPEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCT- 320 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS--SE--ECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCT-
T ss_pred cccccccceeEEcCCCcceeeccccccccccceeccCc--ee--eccccccccccccccccccc-cc-eechhhhcCCC-
Confidence 4445556666655544 111222344455555554432 11 11124556778888887654 22 22224577777
Q ss_pred ccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 186 YLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 186 ~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
+|+.+.+...++.+.. .+..|.+|+.+.+..+ ++.....++.+|++|+.+++.
T Consensus 321 ~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 321 SLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred CCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 8888888666665543 3556888888888665 443334567788888888887
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.59 E-value=5.7e-07 Score=74.93 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=49.1
Q ss_pred HhCCCCCceEEEeecccccccccccccCCccccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcc
Q 042184 155 IANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNL 233 (261)
Q Consensus 155 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 233 (261)
+.+++.|+.+.+... +. ..+-..|..+. +|+.+.+..+++.+.. .+..|.+|+.+.+..+ ++.....++.+|++|
T Consensus 284 F~~c~~L~~i~l~~~-i~-~I~~~aF~~c~-~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-IT-ELPESVFAGCI-SLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECCTT-CC-EECTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred cccccccccccCCCc-cc-ccCceeecCCC-CcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 344555555555421 11 22223466666 7888877666665543 3556788888888544 444445567788888
Q ss_pred cceEec
Q 042184 234 LQLRLA 239 (261)
Q Consensus 234 ~~L~l~ 239 (261)
+.+++.
T Consensus 360 ~~i~~~ 365 (394)
T 4gt6_A 360 NNIEYS 365 (394)
T ss_dssp CEEEES
T ss_pred CEEEEC
Confidence 888887
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=7.8e-07 Score=64.92 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=57.1
Q ss_pred ccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc---chHHHHHHhcc----ccccEEEeeccCCCccc
Q 042184 78 KKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA---DSEVLKELMKL----RQLRKLSIRPQNGNGKD 150 (261)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~~~~~~l~~~----~~L~~L~l~~~~~~~~~ 150 (261)
.+|+.|++++|.++. .-...+..|++|+.|++++| ++.....++.. ++|+.|++++|...++.
T Consensus 61 ~~L~~LDLs~~~Itd----------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS----------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCG----------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccH----------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 457777777776543 11133456777777777777 55555666653 57888888886656665
Q ss_pred hHHHHhCCCCCceEEEeeccccc
Q 042184 151 LCVLIANLENLENLIVLMKSKEE 173 (261)
Q Consensus 151 ~~~~l~~~~~L~~L~l~~n~~~~ 173 (261)
-...+..+++|++|++++|...+
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCC
Confidence 56677788888888888875443
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=2.4e-06 Score=71.15 Aligned_cols=213 Identities=9% Similarity=-0.012 Sum_probs=134.1
Q ss_pred ccccCccccceeecCCCCCCCC-cccccCcccccEEEecCCCceecccccCCCCCCcEEeCCCCcccccchHhhcccccc
Q 042184 3 TSIANFKLMKVLDLEDAPVVYL-PEGVGSLLNLHYLSLRNKKVKIIPKSIGNLLGLESLDLKNTLVRELPVEIRNLKKLR 81 (261)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 81 (261)
..|..|.+|+.+.+..+ ++.+ ...+.++..|+.+.+..+... +.+......+|+.+.+......--...+..+.+++
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLE 256 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCC
T ss_pred ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCceecccccccccccce
Confidence 45778999999998776 4433 356678888888887665432 33334456778888876543222223456778888
Q ss_pred ceeccceecccCchhhhhhhhhcCCcccCCCCCCeEeccccchHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCC
Q 042184 82 YLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEADSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENL 161 (261)
Q Consensus 82 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 161 (261)
.+.+..+.. ..-...+..+..++.+..... ......+..+.+|+.+.+.. .....-...+..|.+|
T Consensus 257 ~~~~~~~~~-----------~i~~~~F~~~~~l~~~~~~~~-~i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 257 SISIQNNKL-----------RIGGSLFYNCSGLKKVIYGSV-IVPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSL 322 (394)
T ss_dssp EEEECCTTC-----------EECSCTTTTCTTCCEEEECSS-EECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTC
T ss_pred eEEcCCCcc-----------eeeccccccccccceeccCce-eecccccccccccccccccc--ccceechhhhcCCCCC
Confidence 888766522 123456677777877776554 01112356677888888765 2222223457788889
Q ss_pred ceEEEeecccccccccccccCCccccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCCcccce
Q 042184 162 ENLIVLMKSKEEVLDLQSLSNPPQYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQL 236 (261)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 236 (261)
+.+++..+ +. .+.-..+.++. +|+.+.+..+++.+.. .+..|.+|+.+++..+- . .....+.+|++|+.+
T Consensus 323 ~~i~lp~~-v~-~I~~~aF~~c~-~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 VSIDLPYL-VE-EIGKRSFRGCT-SLSNINFPLSLRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTT-CC-EECTTTTTTCT-TCCEECCCTTCCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred CEEEeCCc-cc-EEhHHhccCCC-CCCEEEECccccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 98888653 22 23334577788 8999888666665544 46678999999887652 1 122356677777754
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=5.2e-07 Score=70.67 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=67.2
Q ss_pred ccCccccce--eecCCCCCCCCcccc----cCcccccEEEecCCCceec---ccccCCCCCCcEEeCCCCcccccchHhh
Q 042184 5 IANFKLMKV--LDLEDAPVVYLPEGV----GSLLNLHYLSLRNKKVKII---PKSIGNLLGLESLDLKNTLVRELPVEIR 75 (261)
Q Consensus 5 ~~~~~~L~~--L~l~~~~l~~~~~~~----~~l~~L~~L~l~~~~i~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 75 (261)
|...+.|+. ++++.|....++..+ ..+++|+.|++++|.++.+ |..+..+++|++|+|++|.+..+ ..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 344455655 555666433332211 3578888888888887743 34556788888888888888754 2233
Q ss_pred ccc--cccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecc
Q 042184 76 NLK--KLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCII 120 (261)
Q Consensus 76 ~l~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 120 (261)
.+. +|++|++++|.+.+..+- ........+..+++|+.|+-.
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~---~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRD---QSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSS---HHHHHHHHHHHCTTCCEESSC
T ss_pred hcccCCcceEEccCCcCccccCc---chhHHHHHHHHCcccCeECCc
Confidence 343 888888888876531000 000111345667788888643
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=9.9e-07 Score=64.40 Aligned_cols=83 Identities=12% Similarity=-0.018 Sum_probs=41.3
Q ss_pred ccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCC----ccccceEEEec--cCc--CCCccccCCC
Q 042184 136 LRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNP----PQYLQRLYFKG--DMK--KLPDWIFKPK 207 (261)
Q Consensus 136 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~----~~~L~~L~l~~--~l~--~l~~~~~~~~ 207 (261)
|+.|+++++. ....-...+..+++|++|++++|...++..+..+..+ + +|++|++++ .++ .+. .+..++
T Consensus 63 L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~-~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 63 IQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-SMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp EEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHH-HCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred EeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccC-CCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 4444454422 2222223344555555555555543333332333332 2 466666655 455 221 244578
Q ss_pred cccEEEeccCC-CCC
Q 042184 208 NVIRLGLDLSG-LTE 221 (261)
Q Consensus 208 ~L~~L~l~~~~-~~~ 221 (261)
+|++|++++|. +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 88888888884 555
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=1.8e-07 Score=73.31 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=72.8
Q ss_pred ccCcccccE--EEecCCCceecccc----cCCCCCCcEEeCCCCcccc---cchHhhccccccceeccceecccCchhhh
Q 042184 28 VGSLLNLHY--LSLRNKKVKIIPKS----IGNLLGLESLDLKNTLVRE---LPVEIRNLKKLRYLMVYQYYFTSGSSIAE 98 (261)
Q Consensus 28 ~~~l~~L~~--L~l~~~~i~~~~~~----l~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 98 (261)
+...+.|.. ++++.|....++.. ..++++|++|++++|.+.. ++..+..+++|+.|++++|.+++
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~------ 210 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS------ 210 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS------
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC------
Confidence 344456665 66777754433321 2468999999999999884 44667789999999999998864
Q ss_pred hhhhhcCCcccCCCCCCeEecccc--ch-------HHHHHHhccccccEEEe
Q 042184 99 EAAAKLHPGFGSLTNLQKLCIIEA--DS-------EVLKELMKLRQLRKLSI 141 (261)
Q Consensus 99 ~~~~~l~~~~~~~~~L~~L~l~~~--~~-------~~~~~l~~~~~L~~L~l 141 (261)
...+ ..+..+ +|+.|++.+| .. .....+..+|+|+.|+-
T Consensus 211 --~~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 211 --EREL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp --GGGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred --chhh-hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 2222 234444 8999999999 22 12356888899998864
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.09 E-value=4.1e-05 Score=63.18 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=71.7
Q ss_pred CCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCccccc
Q 042184 110 SLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPPQYLQ 188 (261)
Q Consensus 110 ~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 188 (261)
.+..|+.+.+... .......+..+..|+.+.+.. .....-...+..+.+|+.+.+..+ +. ......+..+. +|+
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~-~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS-NLT 289 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT-TCC
T ss_pred cccccceeeeccceeEEccccccCCccceEEEcCC--CccEeCccccceeehhcccccccc-ce-ecccccccccc-ccc
Confidence 3444555544433 111222344556666666644 222122234556777777777543 21 22224467777 888
Q ss_pred eEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCCChhHHhccCCcccceEec
Q 042184 189 RLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTEDPIRVLHALPNLLQLRLA 239 (261)
Q Consensus 189 ~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 239 (261)
.+.+.+ .++.++.. +..|.+|+.+.+..+ ++.....++.+|.+|+.+.+.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 888887 77766543 556888888888654 333334467788888888875
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.82 E-value=5.6e-06 Score=61.53 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=77.5
Q ss_pred ccCcccccEEEecCC-Cce-----ecccccCCCCCCcEEeCCCCccc-----ccchHhhccccccceeccceecccCchh
Q 042184 28 VGSLLNLHYLSLRNK-KVK-----IIPKSIGNLLGLESLDLKNTLVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSI 96 (261)
Q Consensus 28 ~~~l~~L~~L~l~~~-~i~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 96 (261)
+..-+.|+.|+++++ .+. .+.+.+..-..|++|+|++|.+. .+...+..-++|++|++++|.++..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~--- 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE--- 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH---
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH---
Confidence 344577888888875 665 24455666788888888888877 3445566677899999998887643
Q ss_pred hhhhhhhcCCcccCCCCCCeEecccc-----c----hHHHHHHhccccccEEEeec
Q 042184 97 AEEAAAKLHPGFGSLTNLQKLCIIEA-----D----SEVLKELMKLRQLRKLSIRP 143 (261)
Q Consensus 97 ~~~~~~~l~~~~~~~~~L~~L~l~~~-----~----~~~~~~l~~~~~L~~L~l~~ 143 (261)
....+..++..-+.|+.|+++++ . ..+.+.+..-+.|..|++..
T Consensus 114 ---Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 114 ---LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp ---HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred ---HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 45556677777778999988643 1 13455677778888888865
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.75 E-value=3.9e-05 Score=56.98 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=83.3
Q ss_pred cccCCCCCCcEEeCCCC-ccc-----ccchHhhccccccceeccceecccCchhhhhhhhhcCCcccCCCCCCeEecccc
Q 042184 49 KSIGNLLGLESLDLKNT-LVR-----ELPVEIRNLKKLRYLMVYQYYFTSGSSIAEEAAAKLHPGFGSLTNLQKLCIIEA 122 (261)
Q Consensus 49 ~~l~~l~~L~~L~l~~~-~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 122 (261)
..+..-+.|++|+++++ .+. .+...+..-..|+.|++++|.++.. ....+...+..-+.|+.|++++|
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~------ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS------EARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH------HHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH------HHHHHHHHHhcCCccCeEecCCC
Confidence 34456788999999985 666 3455666778899999999988642 45556667777788999999998
Q ss_pred --ch----HHHHHHhccccccEEEeecc-C-CCcc----chHHHHhCCCCCceEEEeeccc
Q 042184 123 --DS----EVLKELMKLRQLRKLSIRPQ-N-GNGK----DLCVLIANLENLENLIVLMKSK 171 (261)
Q Consensus 123 --~~----~~~~~l~~~~~L~~L~l~~~-~-~~~~----~~~~~l~~~~~L~~L~l~~n~~ 171 (261)
.. .+.+.+..-+.|+.|+++++ + .... .+...+..-+.|.+|+++.+..
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 22 24455666688999999752 1 2222 3556677778899999887643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.65 E-value=0.00027 Score=58.26 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=81.2
Q ss_pred CcccCCCCCCeEecccc-chHHHHHHhccccccEEEeeccCCCccchHHHHhCCCCCceEEEeecccccccccccccCCc
Q 042184 106 PGFGSLTNLQKLCIIEA-DSEVLKELMKLRQLRKLSIRPQNGNGKDLCVLIANLENLENLIVLMKSKEEVLDLQSLSNPP 184 (261)
Q Consensus 106 ~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 184 (261)
..+..+..|+.+.+..+ .......+..+.+|+.+.+.. .....-...+..|.+|+.+.+..+.+..... ..+..+.
T Consensus 234 ~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~-~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEP-RVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECT-TTTTTCT
T ss_pred ccccCCccceEEEcCCCccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehh-hhhcCCC
Confidence 45678888999988766 222334567788899888865 2222223467789999999998765543333 5688888
Q ss_pred cccceEEEeccCcCCCc-cccCCCcccEEEeccCCCCCChhHHhccCC
Q 042184 185 QYLQRLYFKGDMKKLPD-WIFKPKNVIRLGLDLSGLTEDPIRVLHALP 231 (261)
Q Consensus 185 ~~L~~L~l~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 231 (261)
+|+.+.+..+++.+.. .+..|.+|+.+.+..+ ++.....++.+++
T Consensus 311 -~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 311 -KLSSVTLPTALKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp -TCCEEECCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred -CCCEEEcCccccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 9999999777776654 3667899999888654 3322223445554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.99 E-value=0.0012 Score=45.59 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=41.1
Q ss_pred ceeecCCCCCC--CCcccccCcccccEEEecCCCceecccc-cCCCCCCcEEeCCCCccc
Q 042184 12 KVLDLEDAPVV--YLPEGVGSLLNLHYLSLRNKKVKIIPKS-IGNLLGLESLDLKNTLVR 68 (261)
Q Consensus 12 ~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~~~ 68 (261)
.+++.++++++ .+|..+. .+|+.|+|++|.|+.+|.. +..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777777 7775443 4688888888888877654 567888888888888776
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.26 E-value=0.0061 Score=42.02 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=30.0
Q ss_pred CCccccceEEEec-cCcCCCcc-ccCCCcccEEEeccCCCCC
Q 042184 182 NPPQYLQRLYFKG-DMKKLPDW-IFKPKNVIRLGLDLSGLTE 221 (261)
Q Consensus 182 ~~~~~L~~L~l~~-~l~~l~~~-~~~~~~L~~L~l~~~~~~~ 221 (261)
.+|.+++.|+|++ .++.++.. +..+++|+.|+|++|.+.-
T Consensus 28 ~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 3555788888888 88877765 4457888888888887754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.75 E-value=13 Score=23.77 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=24.8
Q ss_pred ccccCcccccEEEecCCCceecc-cccCCCCCCcEEeCCCC
Q 042184 26 EGVGSLLNLHYLSLRNKKVKIIP-KSIGNLLGLESLDLKNT 65 (261)
Q Consensus 26 ~~~~~l~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~ 65 (261)
..|.+|.+|+.+.+..+ ++.+. ..+.+|.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 45667777777777653 33333 34667777777777654
Done!