BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042186
(57 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|326487350|dbj|BAJ89659.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 68
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK + G V SK A +LMEKTS
Sbjct: 10 IHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 68
>gi|255546257|ref|XP_002514188.1| AP-4 complex subunit sigma-1, putative [Ricinus communis]
gi|223546644|gb|EEF48142.1| AP-4 complex subunit sigma-1, putative [Ricinus communis]
Length = 143
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK+ + G V SK A +LM+KTS
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILAPIQLMDKTS 143
>gi|357147723|ref|XP_003574458.1| PREDICTED: AP-4 complex subunit sigma-like [Brachypodium
distachyon]
gi|326501244|dbj|BAJ98853.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523491|dbj|BAJ92916.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK + G V SK A +LMEKTS
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 143
>gi|226497166|ref|NP_001151687.1| LOC100285322 [Zea mays]
gi|194702836|gb|ACF85502.1| unknown [Zea mays]
gi|195648847|gb|ACG43891.1| AP-4 complex subunit sigma-1 [Zea mays]
gi|413922183|gb|AFW62115.1| AP-4 complex subunit sigma-1 [Zea mays]
Length = 143
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK + G V SK A +LMEKTS
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 143
>gi|326533246|dbj|BAJ93595.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 132
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK + G V SK A +LMEKTS
Sbjct: 74 IHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 132
>gi|242079031|ref|XP_002444284.1| hypothetical protein SORBIDRAFT_07g019495 [Sorghum bicolor]
gi|241940634|gb|EES13779.1| hypothetical protein SORBIDRAFT_07g019495 [Sorghum bicolor]
Length = 122
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK + G V SK A +LMEKTS
Sbjct: 64 IHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 122
>gi|115481714|ref|NP_001064450.1| Os10g0368400 [Oryza sativa Japonica Group]
gi|22830276|gb|AAN08659.1| putative clathrin assembly protein [Oryza sativa Japonica Group]
gi|31431611|gb|AAP53362.1| Adapter-related protein complex 4 sigma 1 subunit, putative,
expressed [Oryza sativa Japonica Group]
gi|113639059|dbj|BAF26364.1| Os10g0368400 [Oryza sativa Japonica Group]
gi|125531640|gb|EAY78205.1| hypothetical protein OsI_33251 [Oryza sativa Indica Group]
gi|125574556|gb|EAZ15840.1| hypothetical protein OsJ_31256 [Oryza sativa Japonica Group]
Length = 143
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK + G V SK A LMEKTS
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPIHLMEKTS 143
>gi|225445033|ref|XP_002283179.1| PREDICTED: AP-4 complex subunit sigma [Vitis vinifera]
Length = 143
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK+ + G V SK A +LM+K S
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILAPIQLMDKAS 143
>gi|40253273|dbj|BAD05209.1| putative clathrin coat assembly protein AP17 [Oryza sativa Japonica
Group]
gi|215769211|dbj|BAH01440.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201101|gb|EEC83528.1| hypothetical protein OsI_29129 [Oryza sativa Indica Group]
gi|222640497|gb|EEE68629.1| hypothetical protein OsJ_27194 [Oryza sativa Japonica Group]
Length = 143
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++L ET D FG +CE DIMFHLEK + G V SK A +LMEKTS
Sbjct: 85 IHLFVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 143
>gi|297738726|emb|CBI27971.3| unnamed protein product [Vitis vinifera]
Length = 136
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK+ + G V SK A +LM+K S
Sbjct: 78 IHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILAPIQLMDKAS 136
>gi|449435802|ref|XP_004135683.1| PREDICTED: AP-4 complex subunit sigma-like [Cucumis sativus]
gi|449489825|ref|XP_004158427.1| PREDICTED: AP-4 complex subunit sigma-like [Cucumis sativus]
Length = 143
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK+ + G V SK + +LMEK+S
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS 143
>gi|224087999|ref|XP_002308286.1| predicted protein [Populus trichocarpa]
gi|222854262|gb|EEE91809.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK+ + G V SK + +LM+KTS
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMDKTS 143
>gi|351722524|ref|NP_001236735.1| uncharacterized protein LOC100306047 [Glycine max]
gi|356494887|ref|XP_003516313.1| PREDICTED: AP-4 complex subunit sigma-like [Glycine max]
gi|255627383|gb|ACU14036.1| unknown [Glycine max]
Length = 143
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK+ + G V SK +LM+KTS
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILTPIQLMDKTS 143
>gi|388495128|gb|AFK35630.1| unknown [Lotus japonicus]
Length = 143
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK + G V SK A +LM+K S
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKANILAPIQLMDKAS 143
>gi|357510453|ref|XP_003625515.1| AP-4 complex subunit sigma-1 [Medicago truncatula]
gi|357520783|ref|XP_003630680.1| AP-4 complex subunit sigma-1 [Medicago truncatula]
gi|355500530|gb|AES81733.1| AP-4 complex subunit sigma-1 [Medicago truncatula]
gi|355524702|gb|AET05156.1| AP-4 complex subunit sigma-1 [Medicago truncatula]
gi|388520121|gb|AFK48122.1| unknown [Medicago truncatula]
Length = 143
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK + G V SK +LM+KTS
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKSNILTPIQLMDKTS 143
>gi|388515583|gb|AFK45853.1| unknown [Lotus japonicus]
Length = 143
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKTS 57
++LL ET D FG +CE DIMFHLEK+ + G V SK +LM+K S
Sbjct: 85 IHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILTPIQLMDKMS 143
>gi|15224841|ref|NP_179569.1| AP-4 complex subunit sigma [Arabidopsis thaliana]
gi|297836278|ref|XP_002886021.1| clathrin adaptor complex small chain family protein [Arabidopsis
lyrata subsp. lyrata]
gi|75100553|sp|O82201.1|AP4S_ARATH RecName: Full=AP-4 complex subunit sigma; AltName: Full=AP-4
adapter complex subunit sigma; AltName:
Full=Adapter-related protein complex 4 subunit sigma;
AltName: Full=Sigma subunit of AP-4; AltName:
Full=Sigma4-adaptin
gi|13877845|gb|AAK44000.1|AF370185_1 putative clathrin assembly protein [Arabidopsis thaliana]
gi|3687239|gb|AAC62137.1| putative clathrin assembly protein [Arabidopsis thaliana]
gi|16323510|gb|AAL15249.1| putative clathrin assembly protein [Arabidopsis thaliana]
gi|21593846|gb|AAM65813.1| putative clathrin assembly protein [Arabidopsis thaliana]
gi|297331861|gb|EFH62280.1| clathrin adaptor complex small chain family protein [Arabidopsis
lyrata subsp. lyrata]
gi|330251832|gb|AEC06926.1| AP-4 complex subunit sigma [Arabidopsis thaliana]
Length = 143
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEKT 56
++LL ET D FG +CE DIMFHLEK+ + G V SK + +LM+K
Sbjct: 85 IHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSPIQLMDKA 142
>gi|168066797|ref|XP_001785318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663073|gb|EDQ49859.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 143
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 4 LFETADCGFGILCEPDIMFHLEKSISYCRKRSWTGVWQSKVKHSAAN--KLMEKTS 57
+ ET D FG +CE DIMFHLEK+ + G K + + +LM+KT+
Sbjct: 88 VVETMDRYFGNVCELDIMFHLEKAHFMLEEMVMNGCVVETNKQNILHPIQLMDKTT 143
>gi|255079706|ref|XP_002503433.1| predicted protein [Micromonas sp. RCC299]
gi|226518700|gb|ACO64691.1| predicted protein [Micromonas sp. RCC299]
Length = 145
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 1 MYLLFETADCGFGILCEPDIMFHLEKS 27
++ + ET D FG +CE DIMFHLEK+
Sbjct: 85 IHCVVETLDRHFGNVCELDIMFHLEKA 111
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.133 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 866,997,153
Number of Sequences: 23463169
Number of extensions: 23089729
Number of successful extensions: 51848
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51830
Number of HSP's gapped (non-prelim): 19
length of query: 57
length of database: 8,064,228,071
effective HSP length: 30
effective length of query: 27
effective length of database: 7,360,333,001
effective search space: 198728991027
effective search space used: 198728991027
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)