Query 042186
Match_columns 57
No_of_seqs 100 out of 382
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_S AP-2 complex subunit si 99.8 1.1E-20 3.7E-25 117.9 2.1 57 1-57 84-142 (142)
2 3tjz_C Coatomer subunit zeta-1 99.8 6.1E-21 2.1E-25 122.0 0.2 52 1-52 94-148 (153)
3 1w63_Q Adapter-related protein 99.8 9.5E-20 3.2E-24 116.0 1.3 55 1-55 84-140 (158)
4 2vgl_M AP-2 complex subunit MU 99.5 3.8E-15 1.3E-19 105.7 0.5 49 1-50 82-132 (435)
5 1w63_M Adaptor-related protein 99.4 2.2E-15 7.4E-20 106.6 -3.1 51 1-51 84-136 (423)
6 4djg_A Plectin-related protein 28.7 28 0.00095 18.6 1.5 32 24-55 10-41 (52)
7 2hng_A Hypothetical protein; a 26.1 24 0.00083 22.0 1.1 19 1-19 73-91 (127)
8 2o2a_A Hypothetical protein GB 25.8 25 0.00085 21.9 1.1 19 1-19 72-90 (128)
9 2ldf_A Sarafotoxin-M, SRTX-M; 25.7 15 0.0005 17.2 0.0 8 15-22 14-21 (26)
10 2ajj_A NS5A, nonstructural pro 22.1 25 0.00086 16.6 0.5 12 17-28 5-16 (28)
11 1srb_A Sarafotoxins precursor; 21.3 15 0.0005 17.2 -0.5 8 15-22 14-21 (26)
No 1
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.80 E-value=1.1e-20 Score=117.93 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=54.6
Q ss_pred CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhhcC
Q 042186 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEKTS 57 (57)
Q Consensus 1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~~~ 57 (57)
+|+|||+||+|||||||+||++||.++|.+|||| +|.++|||+.+|++++..++++.
T Consensus 84 L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~~ 142 (142)
T 2vgl_S 84 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142 (142)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhccC
Confidence 5899999999999999999999999999999999 99999999999999999998863
No 2
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.79 E-value=6.1e-21 Score=121.98 Aligned_cols=52 Identities=8% Similarity=-0.041 Sum_probs=48.8
Q ss_pred Cceeeeeccccc-CccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHh
Q 042186 1 MYLLFETADCGF-GILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKL 52 (57)
Q Consensus 1 Ih~~VE~LD~~F-~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~ 52 (57)
||.|||+||+|| |||||+||++||+++|.+|||| +|.++|||++.|++++..
T Consensus 94 L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~ 148 (153)
T 3tjz_C 94 LNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVAL 148 (153)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC--
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhc
Confidence 589999999999 9999999999999999999999 999999999999998864
No 3
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.76 E-value=9.5e-20 Score=115.99 Aligned_cols=55 Identities=25% Similarity=0.182 Sum_probs=52.3
Q ss_pred CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhh
Q 042186 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEK 55 (57)
Q Consensus 1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~ 55 (57)
||+|||+||+|||||||+||++||+++|.+|||| +|.++||+++.+.+.+...++
T Consensus 84 L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~ 140 (158)
T 1w63_Q 84 IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL 140 (158)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence 5899999999999999999999999999999999 999999999999999987665
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.48 E-value=3.8e-15 Score=105.68 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=45.3
Q ss_pred CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHH
Q 042186 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAAN 50 (57)
Q Consensus 1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i 50 (57)
||+|||+||.|||+|||+||++||+++|.+|||| +|.++||+++. |+..
T Consensus 82 L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~-l~~~ 132 (435)
T 2vgl_M 82 LYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGA-LKTF 132 (435)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHH-HGGG
T ss_pred HHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHH-HHHH
Confidence 5899999999999999999999999999999999 99999999985 4444
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.44 E-value=2.2e-15 Score=106.61 Aligned_cols=51 Identities=10% Similarity=-0.142 Sum_probs=46.9
Q ss_pred CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHH
Q 042186 1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANK 51 (57)
Q Consensus 1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~ 51 (57)
||+|+|+||.|||+|||+||++||.++|.+|||| +|.++||+++.+.+.+.
T Consensus 84 L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~ 136 (423)
T 1w63_M 84 LYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFIT 136 (423)
T ss_dssp HHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCC
T ss_pred HHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhc
Confidence 5899999999999999999999999999999999 99999999987665543
No 6
>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}
Probab=28.72 E-value=28 Score=18.65 Aligned_cols=32 Identities=16% Similarity=-0.043 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCceeeeecHHHHHHHHHhhhh
Q 042186 24 LEKSISYCRKRSWTGVWQSKVKHSAANKLMEK 55 (57)
Q Consensus 24 f~k~~~ilDE~~G~v~Etsk~~il~~i~~~~~ 55 (57)
..|.-.+|+.+.|.|-.-||+.|-+++...+.
T Consensus 10 lKkLr~~Le~L~GRvaGrnkddveeaismVea 41 (52)
T 4djg_A 10 LKKLRDALESLRGRVAGRNKDDVEEAIAMVEA 41 (52)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHH
Confidence 45677889999999999999999998876654
No 7
>2hng_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE; 1.63A {Streptococcus pneumoniae} SCOP: d.33.1.2
Probab=26.11 E-value=24 Score=21.95 Aligned_cols=19 Identities=5% Similarity=-0.178 Sum_probs=16.2
Q ss_pred CceeeeecccccCccchhh
Q 042186 1 MYLLFETADCGFGILCEPD 19 (57)
Q Consensus 1 Ih~~VE~LD~~F~nVcElD 19 (57)
|+..|.+.|||||.-.|+.
T Consensus 73 IsQiv~i~dr~~~~~sd~~ 91 (127)
T 2hng_A 73 ISQVNHIDGRIVNEPSELN 91 (127)
T ss_dssp EEEEEEEETCCCSSGGGSC
T ss_pred eeeeeeecccccCCcccCC
Confidence 5678999999999988765
No 8
>2o2a_A Hypothetical protein GBS1413; structural genomics, PSI-2, protei structure initiative; 2.10A {Streptococcus agalactiae} SCOP: d.33.1.2
Probab=25.77 E-value=25 Score=21.93 Aligned_cols=19 Identities=5% Similarity=-0.183 Sum_probs=16.1
Q ss_pred CceeeeecccccCccchhh
Q 042186 1 MYLLFETADCGFGILCEPD 19 (57)
Q Consensus 1 Ih~~VE~LD~~F~nVcElD 19 (57)
|+..|.+.|||||.-.|+.
T Consensus 72 IsQiv~i~~r~~~~~sd~~ 90 (128)
T 2o2a_A 72 ISQMAHIQGRLINEPSEFS 90 (128)
T ss_dssp EEEEEEEETCCCSCGGGSC
T ss_pred eeeeeeecccccCCcccCC
Confidence 5678999999999988765
No 9
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=25.73 E-value=15 Score=17.18 Aligned_cols=8 Identities=25% Similarity=1.149 Sum_probs=6.5
Q ss_pred cchhhhhc
Q 042186 15 LCEPDIMF 22 (57)
Q Consensus 15 VcElDiif 22 (57)
.|.||||.
T Consensus 14 fChlDiIW 21 (26)
T 2ldf_A 14 FCHQDVIW 21 (26)
T ss_dssp HHHHTCCC
T ss_pred EEeccEEE
Confidence 49999985
No 10
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=22.14 E-value=25 Score=16.63 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=8.9
Q ss_pred hhhhhccHHHHH
Q 042186 17 EPDIMFHLEKSI 28 (57)
Q Consensus 17 ElDiifnf~k~~ 28 (57)
-||+++.|++-.
T Consensus 5 iLdLl~~lh~~~ 16 (28)
T 2ajj_A 5 VLDLIYSLHKQI 16 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 378888887754
No 11
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=21.34 E-value=15 Score=17.21 Aligned_cols=8 Identities=25% Similarity=1.149 Sum_probs=6.4
Q ss_pred cchhhhhc
Q 042186 15 LCEPDIMF 22 (57)
Q Consensus 15 VcElDiif 22 (57)
.|.||||.
T Consensus 14 fChlDiIW 21 (26)
T 1srb_A 14 FCHQDVIW 21 (26)
T ss_dssp HHSCCCCC
T ss_pred EEeccEEE
Confidence 49999985
Done!