BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042187
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 90 LTISNNGNLVLLNQTNGTIWSTNVSSQ 116
LT+ NNGNLV+ +Q+N IW T + +
Sbjct: 55 LTLHNNGNLVIYDQSNRVIWQTKTNGK 81
>pdb|3BA3|A Chain A, Crystal Structure Of Pyridoxamine 5'-Phosphate
Oxidase-Like Protein (Np_783940.1) From Lactobacillus
Plantarum At 1.55 A Resolution
pdb|3BA3|B Chain B, Crystal Structure Of Pyridoxamine 5'-Phosphate
Oxidase-Like Protein (Np_783940.1) From Lactobacillus
Plantarum At 1.55 A Resolution
Length = 145
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 64 LWYQKIPDTVFWVANRNSP---ISDHN---AVLTISNNG 96
+WY+ PDT+++ + + SP + D N A +TI N+G
Sbjct: 35 VWYEAQPDTLYFSSVKTSPALKVYDQNPDIAFITIPNDG 73
>pdb|3UUW|A Chain A, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|B Chain B, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|C Chain C, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|D Chain D, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile
Length = 308
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 66 YQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLL-NQTNGTIWSTNVS 114
Y + DT W+AN + IS + LT +N NL+ + ++ G +S N S
Sbjct: 168 YIHVIDTALWLANEDVEISGEDLFLT--DNKNLIFVSHKLKGKNFSINTS 215
>pdb|1UB6|H Chain H, Crystal Structure Of Antibody 19g2 With Sera Ligand
pdb|1UB6|A Chain A, Crystal Structure Of Antibody 19g2 With Sera Ligand
Length = 208
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 31 ASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDT-VFWVANRNS 81
A+ + G LV +L + G + +RY+ W ++IP+ + WVA+ +S
Sbjct: 1 AALLESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVASISS 52
>pdb|1FL3|H Chain H, Crystal Structure Of The Blue Fluorescent Antibody
(19g2) In Complex With Stilbene Hapten At 277k
pdb|1FL3|A Chain A, Crystal Structure Of The Blue Fluorescent Antibody
(19g2) In Complex With Stilbene Hapten At 277k
Length = 208
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 31 ASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDT-VFWVANRNS 81
A+ + G LV +L + G + +RY+ W ++IP+ + WVA+ +S
Sbjct: 1 AALLESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVASISS 52
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 24 AADTLTPASFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPI 83
+ +TL+P F+ +G + + L + D W N
Sbjct: 6 SGETLSPGEFLNNGRYVFIMQEDCNLVLYDV----------------DKPIWATNTGG-- 47
Query: 84 SDHNAVLTISNNGNLVLLNQTNGTIWSTNVSSQ 116
D L++ ++GNLV+ + N IW++N +
Sbjct: 48 LDRRCHLSMQSDGNLVVYSPRNNPIWASNTGGE 80
>pdb|1IIU|A Chain A, Chicken Plasma Retinol-binding Protein (rbp)
Length = 174
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 57 SKNRYVGLWY---QKIPDTVFWVANRNSPIS-DHNAVLTISNNGNLVLLN 102
KNRY G WY +K P+ +F N + + D N ++ + G + L N
Sbjct: 15 DKNRYSGTWYAMAKKDPEGLFLQDNVVAQFTVDENGQMSATAKGRVRLFN 64
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 90 LTISNNGNLVLLNQTNGTIWSTNVSSQ 116
L++ +GNLV+ N +N IW++N Q
Sbjct: 54 LSMQTDGNLVVYNPSNKPIWASNTGGQ 80
>pdb|2BJR|A Chain A, Crystal Structure Of The Nematode Sperm Cell Motility
Protein Mfp2b
pdb|2BJR|B Chain B, Crystal Structure Of The Nematode Sperm Cell Motility
Protein Mfp2b
Length = 368
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 54 PGKSKNRYVGLWYQ 67
PG++ ++YV LWYQ
Sbjct: 222 PGENPDQYVALWYQ 235
>pdb|3CFC|H Chain H, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2
Length = 213
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 33 FIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDT-VFWVANRNS 81
+ G LV +L + G + +RY+ W ++IP+ + WVA+ +S
Sbjct: 4 LVESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVASISS 53
>pdb|3CFB|H Chain H, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFB|B Chain B, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
Length = 213
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 33 FIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDT-VFWVANRNS 81
+ G LV +L + G + +RY+ W ++IP+ + WVA+ +S
Sbjct: 4 LVESGGGLVKPGGSLKLSCTASGITFSRYIMSWVRQIPEKRLEWVASISS 53
>pdb|1ZVO|A Chain A, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
pdb|1ZVO|B Chain B, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
Length = 214
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 44 AQRFELGFFSPGKSKNRYVGLWYQKIPDTV 73
QR + F + RY WYQ++P T
Sbjct: 15 GQRVTISCFGSSSNIGRYYVYWYQQLPGTT 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,300,127
Number of Sequences: 62578
Number of extensions: 117795
Number of successful extensions: 342
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 30
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)