Query 042187
Match_columns 116
No_of_seqs 117 out of 1059
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00028 B_lectin Bulb-type man 99.7 2.3E-17 5E-22 112.0 11.2 83 32-115 2-84 (116)
2 smart00108 B_lectin Bulb-type 99.7 5.2E-17 1.1E-21 109.9 10.6 81 32-114 2-82 (114)
3 PF01453 B_lectin: D-mannose b 99.1 4.6E-11 1E-15 81.3 2.8 45 71-115 2-49 (114)
4 cd00028 B_lectin Bulb-type man 98.4 9E-07 1.9E-11 59.8 6.6 41 71-113 74-114 (116)
5 PF01453 B_lectin: D-mannose b 98.4 2.1E-06 4.6E-11 58.3 8.1 67 38-112 12-79 (114)
6 smart00108 B_lectin Bulb-type 98.3 3.3E-06 7.2E-11 56.8 6.9 41 71-113 73-113 (114)
7 PF01436 NHL: NHL repeat; Int 82.5 2.9 6.2E-05 21.0 3.3 21 89-109 6-26 (28)
8 KOG4649 PQQ (pyrrolo-quinoline 75.4 11 0.00024 30.0 5.9 45 71-115 169-218 (354)
9 cd05845 Ig2_L1-CAM_like Second 68.4 10 0.00022 24.8 3.8 32 71-103 34-65 (95)
10 PF01011 PQQ: PQQ enzyme repea 65.0 9.4 0.0002 20.3 2.7 22 93-114 7-29 (38)
11 smart00564 PQQ beta-propeller 62.3 11 0.00023 18.8 2.5 19 93-111 13-32 (33)
12 PF13956 Ibs_toxin: Toxin Ibs, 60.6 5.4 0.00012 18.6 0.9 15 6-20 3-17 (19)
13 PF07172 GRP: Glycine rich pro 59.4 6.6 0.00014 25.9 1.6 12 1-13 1-12 (95)
14 PF07354 Sp38: Zona-pellucida- 54.2 22 0.00047 27.9 3.9 31 71-102 13-43 (271)
15 PF09292 Neil1-DNA_bind: Endon 47.2 19 0.00041 19.9 1.9 20 96-115 16-35 (39)
16 PF02237 BPL_C: Biotin protein 46.9 40 0.00088 18.9 3.4 19 87-105 17-35 (48)
17 PRK11138 outer membrane biogen 45.2 1.5E+02 0.0033 23.4 9.2 27 89-115 122-150 (394)
18 PF12276 DUF3617: Protein of u 42.4 26 0.00057 24.3 2.6 17 18-34 17-33 (162)
19 PHA00149 DNA encapsidation pro 42.0 95 0.0021 25.0 5.8 38 41-83 234-271 (331)
20 PRK09723 putative fimbrial-lik 41.4 2.1E+02 0.0046 23.9 9.1 27 27-53 29-60 (421)
21 PF06006 DUF905: Bacterial pro 39.2 31 0.00066 21.6 2.2 15 97-111 34-48 (70)
22 PRK11138 outer membrane biogen 36.6 1.7E+02 0.0036 23.1 6.6 43 71-113 314-363 (394)
23 PRK12618 flgA flagellar basal 36.3 21 0.00045 25.0 1.2 17 22-38 22-38 (141)
24 PF12458 DUF3686: ATPase invol 35.5 1.3E+02 0.0028 25.3 5.9 66 38-113 311-385 (448)
25 TIGR03075 PQQ_enz_alc_DH PQQ-d 34.5 1E+02 0.0022 26.1 5.2 44 71-114 451-501 (527)
26 PF12894 Apc4_WD40: Anaphase-p 33.5 31 0.00066 19.6 1.4 20 91-110 28-47 (47)
27 TIGR03300 assembly_YfgL outer 32.7 96 0.0021 24.1 4.6 45 71-115 85-135 (377)
28 PF13360 PQQ_2: PQQ-like domai 32.3 91 0.002 22.0 4.2 19 94-112 44-63 (238)
29 cd00216 PQQ_DH Dehydrogenases 30.0 1.1E+02 0.0025 25.2 4.8 27 88-114 407-435 (488)
30 COG4594 FecB ABC-type Fe3+-cit 29.4 83 0.0018 24.9 3.6 25 5-29 5-29 (310)
31 cd05852 Ig5_Contactin-1 Fifth 28.8 84 0.0018 18.7 3.0 31 71-103 16-46 (73)
32 PF13540 RCC1_2: Regulator of 26.6 96 0.0021 15.5 2.8 20 89-116 11-30 (30)
33 COG3110 Uncharacterized protei 26.2 2.9E+02 0.0064 20.9 7.3 18 35-52 45-62 (216)
34 PF12690 BsuPI: Intracellular 26.1 61 0.0013 20.4 2.1 15 97-111 27-41 (82)
35 TIGR03300 assembly_YfgL outer 25.8 1.7E+02 0.0036 22.8 4.9 44 71-114 125-174 (377)
36 PF03527 RHS: RHS protein; In 25.3 23 0.00049 19.8 -0.1 13 100-112 15-27 (41)
37 TIGR01761 thiaz-red thiazoliny 25.2 56 0.0012 26.2 2.1 24 89-112 223-247 (343)
38 KOG1230 Protein containing rep 24.7 3.7E+02 0.008 22.9 6.7 63 37-103 181-250 (521)
39 PF11153 DUF2931: Protein of u 24.6 1.5E+02 0.0032 21.8 4.2 12 43-54 26-37 (216)
40 TIGR02001 gcw_chp conserved hy 24.0 1.8E+02 0.004 22.1 4.7 10 58-67 68-77 (243)
41 PF11920 DUF3438: Protein of u 23.9 3.7E+02 0.008 21.3 8.8 64 33-103 34-98 (288)
42 PF12621 DUF3779: Phosphate me 22.6 2.2E+02 0.0048 18.3 4.7 40 71-112 45-90 (95)
43 PRK04032 hypothetical protein; 21.6 46 0.001 24.0 0.9 23 26-48 18-40 (159)
44 PF10636 hemP: Hemin uptake pr 21.4 1.1E+02 0.0024 16.8 2.2 13 89-101 25-37 (38)
45 PF12197 lci: Bacillus cereus 21.2 86 0.0019 17.9 1.8 22 40-63 5-26 (45)
46 PF03771 SPDY: Domain of unkno 20.9 2E+02 0.0043 17.1 4.1 40 41-82 2-44 (63)
47 PF04272 Phospholamban: Phosph 20.4 98 0.0021 17.9 1.9 13 7-19 35-47 (52)
No 1
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.75 E-value=2.3e-17 Score=112.01 Aligned_cols=83 Identities=36% Similarity=0.651 Sum_probs=70.9
Q ss_pred CccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEee
Q 042187 32 SFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWST 111 (116)
Q Consensus 32 ~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWss 111 (116)
+.|..+++|+|+++.|++|||.+......+.+|||...+.++||.+|++.|. ...+.|.|++||+|+|+|.++.++|++
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW~S 80 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSSRTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVWSS 80 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCCCeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEEEe
Confidence 4678899999999999999999873223788999987546899999999983 356789999999999999999999999
Q ss_pred cCCC
Q 042187 112 NVSS 115 (116)
Q Consensus 112 n~~~ 115 (116)
++.+
T Consensus 81 ~~~~ 84 (116)
T cd00028 81 NTTR 84 (116)
T ss_pred cccC
Confidence 9864
No 2
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.73 E-value=5.2e-17 Score=109.86 Aligned_cols=81 Identities=41% Similarity=0.742 Sum_probs=70.4
Q ss_pred CccCCCCeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEee
Q 042187 32 SFIRDGEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWST 111 (116)
Q Consensus 32 ~~L~~~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWss 111 (116)
+.|..++.|+|+++.|++|||.+.. ...+.+|||...++++||.|||+.|+.. .+.|.|++||+|+|+|.++.++|++
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~~~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~g~~vW~S 79 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSSSRTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGDGRVVWSS 79 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECCCCcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCCCCEEEEe
Confidence 5678899999999999999999863 4568889998744579999999999764 4789999999999999999999999
Q ss_pred cCC
Q 042187 112 NVS 114 (116)
Q Consensus 112 n~~ 114 (116)
++.
T Consensus 80 ~t~ 82 (114)
T smart00108 80 NTT 82 (114)
T ss_pred ccc
Confidence 985
No 3
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.10 E-value=4.6e-11 Score=81.26 Aligned_cols=45 Identities=49% Similarity=0.869 Sum_probs=28.5
Q ss_pred CeEEEEecCCCCCCCC--cceEEEecCCcEEEEcCCCcEEEee-cCCC
Q 042187 71 DTVFWVANRNSPISDH--NAVLTISNNGNLVLLNQTNGTIWST-NVSS 115 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~--~~~L~l~~dG~LvL~d~~~~~vWss-n~~~ 115 (116)
+++||+|||+.|+... ..+|.|++||+|+|+|.+++.+|++ ++.|
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~ 49 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSG 49 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TT
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCC
Confidence 5899999999998532 3789999999999999888889999 5543
No 4
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.43 E-value=9e-07 Score=59.81 Aligned_cols=41 Identities=32% Similarity=0.600 Sum_probs=33.6
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeecC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNV 113 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn~ 113 (116)
..++|..+... ......+.|++||||+|++.++.+||+|.+
T Consensus 74 g~~vW~S~~~~--~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~ 114 (116)
T cd00028 74 GTVVWSSNTTR--VNGNYVLVLLDDGNLVLYDSDGNFLWQSFD 114 (116)
T ss_pred CcEEEEecccC--CCCceEEEEeCCCCEEEECCCCCEEEcCCC
Confidence 46799988765 123467999999999999999999999975
No 5
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.41 E-value=2.1e-06 Score=58.25 Aligned_cols=67 Identities=25% Similarity=0.497 Sum_probs=48.2
Q ss_pred CeEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEe-cCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeec
Q 042187 38 EKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVA-NRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTN 112 (116)
Q Consensus 38 ~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~A-nr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn 112 (116)
+.+.+.++.+.|-|..+++ |.++... .+++|.. +...... ..+.+.|++||||+|+|.++.++|++.
T Consensus 12 ~p~~~~s~~~~L~l~~dGn-----Lvl~~~~--~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf 79 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN-----LVLYDSN--GSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSF 79 (114)
T ss_dssp EEEEECETTEEEEEETTSE-----EEEEETT--TEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEEST
T ss_pred cccccccccccceECCCCe-----EEEEcCC--CCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeec
Confidence 4555655899999988764 4344332 5789999 4444422 467899999999999999999999985
No 6
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.30 E-value=3.3e-06 Score=56.79 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=33.0
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCCcEEEeecC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTNGTIWSTNV 113 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~~~vWssn~ 113 (116)
..++|..+.... .....+.|++||||+|+|.+++++|+|..
T Consensus 73 g~~vW~S~t~~~--~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~ 113 (114)
T smart00108 73 GRVVWSSNTTGA--NGNYVLVLLDDGNLVIYDSDGNFLWQSFD 113 (114)
T ss_pred CCEEEEecccCC--CCceEEEEeCCCCEEEECCCCCEEeCCCC
Confidence 468999887621 22457999999999999999999999864
No 7
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=82.50 E-value=2.9 Score=21.03 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=17.2
Q ss_pred eEEEecCCcEEEEcCCCcEEE
Q 042187 89 VLTISNNGNLVLLNQTNGTIW 109 (116)
Q Consensus 89 ~L~l~~dG~LvL~d~~~~~vW 109 (116)
.+.++.+|++++.|.++.-||
T Consensus 6 gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEE
Confidence 377778999999998877776
No 8
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.43 E-value=11 Score=30.01 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=34.3
Q ss_pred CeEEEEecCCCCCCCC----cceEEE-ecCCcEEEEcCCCcEEEeecCCC
Q 042187 71 DTVFWVANRNSPISDH----NAVLTI-SNNGNLVLLNQTNGTIWSTNVSS 115 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~----~~~L~l-~~dG~LvL~d~~~~~vWssn~~~ 115 (116)
.+..|.+.|..|+-.+ +....+ +-||+|.-.|+.|+.||...+.|
T Consensus 169 ~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 169 STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred cceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 5789999999998643 122333 35899999999999999877766
No 9
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=68.42 E-value=10 Score=24.76 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQ 103 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~ 103 (116)
.++.|+-+....+. .+.+..++.+|+|++.+-
T Consensus 34 P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs~v 65 (95)
T cd05845 34 LRIYWMNSDLLHIT-QDERVSMGQNGNLYFANV 65 (95)
T ss_pred CEEEEECCCCcccc-ccccEEECCCceEEEEEE
Confidence 57788854444444 356788888999998753
No 10
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=65.03 E-value=9.4 Score=20.27 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=17.5
Q ss_pred ecCCcEEEEcC-CCcEEEeecCC
Q 042187 93 SNNGNLVLLNQ-TNGTIWSTNVS 114 (116)
Q Consensus 93 ~~dG~LvL~d~-~~~~vWssn~~ 114 (116)
+.+|.++-.|. .|+.+|+.++.
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEESS
T ss_pred CCCCEEEEEECCCCCEEEeeeCC
Confidence 56788988886 58899998764
No 11
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=62.30 E-value=11 Score=18.82 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=14.4
Q ss_pred ecCCcEEEEcC-CCcEEEee
Q 042187 93 SNNGNLVLLNQ-TNGTIWST 111 (116)
Q Consensus 93 ~~dG~LvL~d~-~~~~vWss 111 (116)
+.+|.|+-.|. +|+.+|+.
T Consensus 13 ~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 13 STDGTLYALDAKTGEILWTY 32 (33)
T ss_pred cCCCEEEEEEcccCcEEEEc
Confidence 34688888887 68899975
No 12
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=60.60 E-value=5.4 Score=18.64 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHhhhc
Q 042187 6 CFNIFRSLIFLLSRK 20 (116)
Q Consensus 6 ~~~~~~~~~ll~~~~ 20 (116)
++.+++.+||+++.+
T Consensus 3 k~vIIlvvLLliSf~ 17 (19)
T PF13956_consen 3 KLVIILVVLLLISFP 17 (19)
T ss_pred eehHHHHHHHhcccc
Confidence 455665666665543
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.41 E-value=6.6 Score=25.89 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=6.5
Q ss_pred CCCCchHHHHHHH
Q 042187 1 MENRPCFNIFRSL 13 (116)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (116)
|.+++ |+++.++
T Consensus 1 MaSK~-~llL~l~ 12 (95)
T PF07172_consen 1 MASKA-FLLLGLL 12 (95)
T ss_pred CchhH-HHHHHHH
Confidence 77554 5555444
No 14
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=54.21 E-value=22 Score=27.88 Aligned_cols=31 Identities=29% Similarity=0.642 Sum_probs=26.4
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEc
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLN 102 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d 102 (116)
.+..|+.-.++++.+ +..+.||+.|.|++.|
T Consensus 13 P~y~W~GP~g~~l~g-n~~~nIT~TG~L~~~~ 43 (271)
T PF07354_consen 13 PTYLWTGPNGKPLSG-NSYVNITETGKLMFKN 43 (271)
T ss_pred CceEEECCCCcccCC-CCeEEEccCceEEeec
Confidence 567899988889885 6789999999999975
No 15
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=47.19 E-value=19 Score=19.92 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=10.8
Q ss_pred CcEEEEcCCCcEEEeecCCC
Q 042187 96 GNLVLLNQTNGTIWSTNVSS 115 (116)
Q Consensus 96 G~LvL~d~~~~~vWssn~~~ 115 (116)
|-=-|+|++|++||--...|
T Consensus 16 gM~sl~D~~gRTiWFqGdPG 35 (39)
T PF09292_consen 16 GMKSLRDRNGRTIWFQGDPG 35 (39)
T ss_dssp T-EEEE-TTS-EEEESS---
T ss_pred ccccccccCCCEEEeeCCCC
Confidence 43456799999999877655
No 16
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=46.86 E-value=40 Score=18.87 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.7
Q ss_pred cceEEEecCCcEEEEcCCC
Q 042187 87 NAVLTISNNGNLVLLNQTN 105 (116)
Q Consensus 87 ~~~L~l~~dG~LvL~d~~~ 105 (116)
.-..-++++|.|++...+|
T Consensus 17 G~~~gId~~G~L~v~~~~g 35 (48)
T PF02237_consen 17 GIAEGIDDDGALLVRTEDG 35 (48)
T ss_dssp EEEEEEETTSEEEEEETTE
T ss_pred EEEEEECCCCEEEEEECCC
Confidence 3457889999999998887
No 17
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=45.20 E-value=1.5e+02 Score=23.35 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=18.4
Q ss_pred eEEEe-cCCcEEEEcC-CCcEEEeecCCC
Q 042187 89 VLTIS-NNGNLVLLNQ-TNGTIWSTNVSS 115 (116)
Q Consensus 89 ~L~l~-~dG~LvL~d~-~~~~vWssn~~~ 115 (116)
.+.+. .+|.|+-.|. +|+.+|+.+..+
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 34443 5688887785 688999877543
No 18
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=42.40 E-value=26 Score=24.28 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=11.2
Q ss_pred hhcccccccccCCCCcc
Q 042187 18 SRKVSLAADTLTPASFI 34 (116)
Q Consensus 18 ~~~~~~a~~tl~~G~~L 34 (116)
...++.+...+.||++=
T Consensus 17 ~~~~~a~~~~~kpGlWe 33 (162)
T PF12276_consen 17 AAAAAAAAPDIKPGLWE 33 (162)
T ss_pred hcccccccCCCCCcccE
Confidence 44555566778999853
No 19
>PHA00149 DNA encapsidation protein
Probab=41.96 E-value=95 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.452 Sum_probs=29.3
Q ss_pred EeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCC
Q 042187 41 VSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPI 83 (116)
Q Consensus 41 vS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv 83 (116)
.+.++.|.++++-.++ ++++|..- .+..||.|.+..|-
T Consensus 234 ~~~~~k~~ysi~~~g~----~~~vwvd~-~~~~~y~~~~~dp~ 271 (331)
T PHA00149 234 RSKNSKFVFSIRYNGN----YYTVWVDL-TQMLVYIATAHDPS 271 (331)
T ss_pred hccCceEEEEEEECCe----EEEEEEEc-cceEEEEecccCCC
Confidence 4788999999987663 78999432 15789999988883
No 20
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=41.36 E-value=2.1e+02 Score=23.90 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=16.8
Q ss_pred ccCCCCccCCC---C--eEEeCCCceEEEEec
Q 042187 27 TLTPASFIRDG---E--KLVSSAQRFELGFFS 53 (116)
Q Consensus 27 tl~~G~~L~~~---~--~LvS~~g~F~lGF~~ 53 (116)
++-.|+.-..| + ..-.|++++..-|-.
T Consensus 29 ~~~vg~~~~~~~~~~~~~~~g~~~d~~~~f~~ 60 (421)
T PRK09723 29 SYIVGNYYGVGPSDQKWNETGPSGDATVTFRY 60 (421)
T ss_pred EEEEccccccCCccccccccCCCcceEEEecc
Confidence 45556654443 2 356788888888843
No 21
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=39.18 E-value=31 Score=21.63 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=10.1
Q ss_pred cEEEEcCCCcEEEee
Q 042187 97 NLVLLNQTNGTIWST 111 (116)
Q Consensus 97 ~LvL~d~~~~~vWss 111 (116)
.|+++|.+|..||..
T Consensus 34 RlvvRd~~g~mvWRa 48 (70)
T PF06006_consen 34 RLVVRDTEGQMVWRA 48 (70)
T ss_dssp EEEEE-SS--EEEEE
T ss_pred EEEEEcCCCcEEEEe
Confidence 599999999999874
No 22
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=36.58 E-value=1.7e+02 Score=23.15 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=26.4
Q ss_pred CeEEEEecCC------CCCCCCcceEEEecCCcEEEEcC-CCcEEEeecC
Q 042187 71 DTVFWVANRN------SPISDHNAVLTISNNGNLVLLNQ-TNGTIWSTNV 113 (116)
Q Consensus 71 ~tvvW~Anr~------~pv~~~~~~L~l~~dG~LvL~d~-~~~~vWssn~ 113 (116)
.+++|..++. .|+...+.....+.||.|+..|. +|+.+|+.+.
T Consensus 314 G~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 4678975531 13221122344456799988886 6889998764
No 23
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=36.32 E-value=21 Score=25.03 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.2
Q ss_pred cccccccCCCCccCCCC
Q 042187 22 SLAADTLTPASFIRDGE 38 (116)
Q Consensus 22 ~~a~~tl~~G~~L~~~~ 38 (116)
..+...|.+|+.++.+|
T Consensus 22 vVA~r~L~rGevIt~~D 38 (141)
T PRK12618 22 VVAARTIRALTVIGAED 38 (141)
T ss_pred EEEccCcCCCCCcCHHH
Confidence 45567799999999766
No 24
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=35.53 E-value=1.3e+02 Score=25.28 Aligned_cols=66 Identities=26% Similarity=0.401 Sum_probs=40.7
Q ss_pred CeEEeCCCc-eEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcCCC-c-------EE
Q 042187 38 EKLVSSAQR-FELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQTN-G-------TI 108 (116)
Q Consensus 38 ~~LvS~~g~-F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~~~-~-------~v 108 (116)
+.+.||||- +-.-||.+.. +.|+-.-|+-|.+. =..|+.+. ...+-+||.|++..+.+ + .|
T Consensus 311 r~vrSPNGEDvLYvF~~~~~--g~~~Ll~YN~I~k~------v~tPi~ch--G~alf~DG~l~~fra~~~EptrvHp~Qi 380 (448)
T PF12458_consen 311 RKVRSPNGEDVLYVFYAREE--GRYLLLPYNLIRKE------VATPIICH--GYALFEDGRLVYFRAEGDEPTRVHPMQI 380 (448)
T ss_pred EEecCCCCceEEEEEEECCC--CcEEEEechhhhhh------hcCCeecc--ceeEecCCEEEEEecCCCCcceecccee
Confidence 457788884 4455666653 34665677755432 12365532 26667789999987652 2 57
Q ss_pred EeecC
Q 042187 109 WSTNV 113 (116)
Q Consensus 109 Wssn~ 113 (116)
|.|+-
T Consensus 381 WqTPf 385 (448)
T PF12458_consen 381 WQTPF 385 (448)
T ss_pred ecCCc
Confidence 99884
No 25
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=34.48 E-value=1e+02 Score=26.07 Aligned_cols=44 Identities=11% Similarity=0.368 Sum_probs=29.1
Q ss_pred CeEEEEecCCCCCC-----CCcceEEE-ecCCcEEEEcC-CCcEEEeecCC
Q 042187 71 DTVFWVANRNSPIS-----DHNAVLTI-SNNGNLVLLNQ-TNGTIWSTNVS 114 (116)
Q Consensus 71 ~tvvW~Anr~~pv~-----~~~~~L~l-~~dG~LvL~d~-~~~~vWssn~~ 114 (116)
..++|...+..|.. .....+.. +.+|.|..+|. +|+++|+....
T Consensus 451 Gk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 451 GKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 67899877666532 11222233 34799999987 58999998753
No 26
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=33.45 E-value=31 Score=19.59 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=15.8
Q ss_pred EEecCCcEEEEcCCCcEEEe
Q 042187 91 TISNNGNLVLLNQTNGTIWS 110 (116)
Q Consensus 91 ~l~~dG~LvL~d~~~~~vWs 110 (116)
..+.+|.+.++.-+++-||+
T Consensus 28 ~~t~~g~v~v~Rl~~qriw~ 47 (47)
T PF12894_consen 28 LGTEDGEVLVYRLNWQRIWS 47 (47)
T ss_pred EEECCCeEEEEECCCcCccC
Confidence 33568999998888888885
No 27
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=32.75 E-value=96 Score=24.11 Aligned_cols=45 Identities=16% Similarity=0.511 Sum_probs=29.5
Q ss_pred CeEEEEecCCCCCCC----CcceEEE-ecCCcEEEEcC-CCcEEEeecCCC
Q 042187 71 DTVFWVANRNSPISD----HNAVLTI-SNNGNLVLLNQ-TNGTIWSTNVSS 115 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~----~~~~L~l-~~dG~LvL~d~-~~~~vWssn~~~ 115 (116)
.+++|..+-..++.. .+..+.+ +.+|.++-.|. +|+.+|+....+
T Consensus 85 G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 85 GKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 578998654333221 2344555 46789999997 699999877654
No 28
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=32.33 E-value=91 Score=22.04 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=8.8
Q ss_pred cCCcEEEEcC-CCcEEEeec
Q 042187 94 NNGNLVLLNQ-TNGTIWSTN 112 (116)
Q Consensus 94 ~dG~LvL~d~-~~~~vWssn 112 (116)
.+|.|+..|. +|+.+|+..
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEee
Confidence 4444444443 444555443
No 29
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=30.01 E-value=1.1e+02 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.354 Sum_probs=20.3
Q ss_pred ceEEE-ecCCcEEEEcC-CCcEEEeecCC
Q 042187 88 AVLTI-SNNGNLVLLNQ-TNGTIWSTNVS 114 (116)
Q Consensus 88 ~~L~l-~~dG~LvL~d~-~~~~vWssn~~ 114 (116)
..+.+ +.||.|+-.|. +|+.+|+.+..
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 34555 56899999886 68999998763
No 30
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=29.37 E-value=83 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHhhhcccccccccC
Q 042187 5 PCFNIFRSLIFLLSRKVSLAADTLT 29 (116)
Q Consensus 5 ~~~~~~~~~~ll~~~~~~~a~~tl~ 29 (116)
+.+.+.+++++|+++.+|.+.|+=.
T Consensus 5 ~~~~i~~lll~lllva~C~~s~~~~ 29 (310)
T COG4594 5 KTAIILTLLLLLLLVAACSSSDNNQ 29 (310)
T ss_pred hhHHHHHHHHHHHHHHHhcCcCccc
Confidence 3344444555555566666555433
No 31
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=28.75 E-value=84 Score=18.75 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=19.4
Q ss_pred CeEEEEecCCCCCCCCcceEEEecCCcEEEEcC
Q 042187 71 DTVFWVANRNSPISDHNAVLTISNNGNLVLLNQ 103 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~ 103 (116)
.++.|.-+.. ++. .+....+..+|.|.+.+-
T Consensus 16 p~v~W~k~~~-~l~-~~~r~~~~~~g~L~I~~v 46 (73)
T cd05852 16 PKFSWSKGTE-LLV-NNSRISIWDDGSLEILNI 46 (73)
T ss_pred CEEEEEeCCE-ecc-cCCCEEEcCCCEEEECcC
Confidence 5678875433 333 234677777888888754
No 32
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=26.63 E-value=96 Score=15.49 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=10.1
Q ss_pred eEEEecCCcEEEEcCCCcEEEeecCCCC
Q 042187 89 VLTISNNGNLVLLNQTNGTIWSTNVSSQ 116 (116)
Q Consensus 89 ~L~l~~dG~LvL~d~~~~~vWssn~~~~ 116 (116)
++.+++||+++- |-.|..||
T Consensus 11 t~al~~~g~v~~--------wG~n~~GQ 30 (30)
T PF13540_consen 11 TCALTSDGEVYC--------WGDNNYGQ 30 (30)
T ss_dssp EEEEE-TTEEEE--------EE--TTST
T ss_pred EEEEEcCCCEEE--------EcCCcCCC
Confidence 466666676543 66666665
No 33
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.22 E-value=2.9e+02 Score=20.93 Aligned_cols=18 Identities=6% Similarity=0.123 Sum_probs=14.6
Q ss_pred CCCCeEEeCCCceEEEEe
Q 042187 35 RDGEKLVSSAQRFELGFF 52 (116)
Q Consensus 35 ~~~~~LvS~~g~F~lGF~ 52 (116)
.+-++++..+|....-|-
T Consensus 45 k~k~~iel~~g~hQiVfR 62 (216)
T COG3110 45 KGKDSIELDDGPHQIVFR 62 (216)
T ss_pred cCcceeeecCCCceEEEE
Confidence 345689999999999993
No 34
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=26.11 E-value=61 Score=20.44 Aligned_cols=15 Identities=13% Similarity=0.528 Sum_probs=9.7
Q ss_pred cEEEEcCCCcEEEee
Q 042187 97 NLVLLNQTNGTIWST 111 (116)
Q Consensus 97 ~LvL~d~~~~~vWss 111 (116)
.++|.|.+|+.||.-
T Consensus 27 D~~v~d~~g~~vwrw 41 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRW 41 (82)
T ss_dssp EEEEE-TT--EEEET
T ss_pred EEEEECCCCCEEEEe
Confidence 688888999999864
No 35
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=25.80 E-value=1.7e+02 Score=22.76 Aligned_cols=44 Identities=23% Similarity=0.511 Sum_probs=27.0
Q ss_pred CeEEEEecCCCCCCC----CcceEEE-ecCCcEEEEcC-CCcEEEeecCC
Q 042187 71 DTVFWVANRNSPISD----HNAVLTI-SNNGNLVLLNQ-TNGTIWSTNVS 114 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~----~~~~L~l-~~dG~LvL~d~-~~~~vWssn~~ 114 (116)
..++|......++.. .+..+.+ ..+|.|+..|. +|+.+|.....
T Consensus 125 G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 125 GKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred CcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence 456787654432211 1233444 46788999888 58899987654
No 36
>PF03527 RHS: RHS protein; InterPro: IPR001826 RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell. The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains [, ]. The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat.
Probab=25.29 E-value=23 Score=19.79 Aligned_cols=13 Identities=15% Similarity=0.652 Sum_probs=8.1
Q ss_pred EEcCCCcEEEeec
Q 042187 100 LLNQTNGTIWSTN 112 (116)
Q Consensus 100 L~d~~~~~vWssn 112 (116)
|.|.+|.++|+..
T Consensus 15 ltd~~G~~vW~a~ 27 (41)
T PF03527_consen 15 LTDEDGNIVWRAE 27 (41)
T ss_pred HHHhcCceEEEEe
Confidence 3466667777654
No 37
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=25.15 E-value=56 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=19.3
Q ss_pred eEEEe-cCCcEEEEcCCCcEEEeec
Q 042187 89 VLTIS-NNGNLVLLNQTNGTIWSTN 112 (116)
Q Consensus 89 ~L~l~-~dG~LvL~d~~~~~vWssn 112 (116)
++++. +.|+|.|.|..|-++|+..
T Consensus 223 ri~~g~~~G~L~L~~~~Gpv~W~p~ 247 (343)
T TIGR01761 223 RLSLGTPEGHLSLVSSHGPVIWSPA 247 (343)
T ss_pred eEEEeccCcEEEEecCCCCeeeccC
Confidence 45555 5699999999999999864
No 38
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=24.66 E-value=3.7e+02 Score=22.88 Aligned_cols=63 Identities=17% Similarity=0.392 Sum_probs=40.2
Q ss_pred CCeEEeCCCceEEEEecCCCCCceEEEEEeecCC----CeEEEEe-cCC--CCCCCCcceEEEecCCcEEEEcC
Q 042187 37 GEKLVSSAQRFELGFFSPGKSKNRYVGLWYQKIP----DTVFWVA-NRN--SPISDHNAVLTISNNGNLVLLNQ 103 (116)
Q Consensus 37 ~~~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~----~tvvW~A-nr~--~pv~~~~~~L~l~~dG~LvL~d~ 103 (116)
.+..+.+...+-||=|...+. .| |+|+++- .+.-|.- ... .|...+++.+..+.+|.++|+.+
T Consensus 181 HRMvawK~~lilFGGFhd~nr--~y--~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 181 HRMVAWKRQLILFGGFHDSNR--DY--IYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred ceeEEeeeeEEEEcceecCCC--ce--EEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 456778888888875555432 23 5566532 5667872 222 35444567888898899999855
No 39
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=24.59 E-value=1.5e+02 Score=21.78 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=5.6
Q ss_pred CCCceEEEEecC
Q 042187 43 SAQRFELGFFSP 54 (116)
Q Consensus 43 ~~g~F~lGF~~~ 54 (116)
+...+.++|..|
T Consensus 26 ~~~~W~~~~~~P 37 (216)
T PF11153_consen 26 PYFEWRFGVAAP 37 (216)
T ss_pred CCCccEEEEecC
Confidence 444445555443
No 40
>TIGR02001 gcw_chp conserved hypothetical protein, proteobacterial. This model represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis, Ralstonia solanacearum, and Colwellia psychrerythraea, usually as part of a paralogous family. The function is unknown.
Probab=23.98 E-value=1.8e+02 Score=22.06 Aligned_cols=10 Identities=30% Similarity=0.860 Sum_probs=5.7
Q ss_pred CceEEEEEee
Q 042187 58 KNRYVGLWYQ 67 (116)
Q Consensus 58 ~~~~l~Iw~~ 67 (116)
..+|+++|-.
T Consensus 68 ~Gfy~G~w~S 77 (243)
T TIGR02001 68 SGFYAGVWAS 77 (243)
T ss_pred CCEEEEEEEc
Confidence 3456666654
No 41
>PF11920 DUF3438: Protein of unknown function (DUF3438); InterPro: IPR021844 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=23.86 E-value=3.7e+02 Score=21.28 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=37.0
Q ss_pred ccCCCC-eEEeCCCceEEEEecCCCCCceEEEEEeecCCCeEEEEecCCCCCCCCcceEEEecCCcEEEEcC
Q 042187 33 FIRDGE-KLVSSAQRFELGFFSPGKSKNRYVGLWYQKIPDTVFWVANRNSPISDHNAVLTISNNGNLVLLNQ 103 (116)
Q Consensus 33 ~L~~~~-~LvS~~g~F~lGF~~~~~~~~~~l~Iw~~~~~~tvvW~Anr~~pv~~~~~~L~l~~dG~LvL~d~ 103 (116)
.|..|| -++.=+.+-..||=..=+ . -+.|- +...+++|.|+..-|.. --.++--++|.++|.|-
T Consensus 34 ~L~VgqERiV~~~~nVrVg~P~~l~-~--kLrvq--S~gGavYL~A~e~f~~t--RLqlq~~~~GeiILLDv 98 (288)
T PF11920_consen 34 PLPVGQERIVFFDKNVRVGVPASLN-G--KLRVQ--SAGGAVYLKASEPFPPT--RLQLQDVESGEIILLDV 98 (288)
T ss_pred ecCCCcEEEEEcCcCeEEcCChhhh-h--cEEEe--eeCCEEEEeccCCCCcc--eEEEEEcCCCcEEEEEE
Confidence 455665 467767777777622111 1 12232 22378999999876632 12234446899999874
No 42
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=22.60 E-value=2.2e+02 Score=18.29 Aligned_cols=40 Identities=20% Similarity=0.575 Sum_probs=25.2
Q ss_pred CeEEEEecCCCCCCCC-----cce-EEEecCCcEEEEcCCCcEEEeec
Q 042187 71 DTVFWVANRNSPISDH-----NAV-LTISNNGNLVLLNQTNGTIWSTN 112 (116)
Q Consensus 71 ~tvvW~Anr~~pv~~~-----~~~-L~l~~dG~LvL~d~~~~~vWssn 112 (116)
..+||++....-++.. ... +.++++|-- + |.+|+++|.-+
T Consensus 45 ~P~lWIP~D~~GvS~~ei~~~~~~~v~~Sd~gA~-l-dekgkv~~~~~ 90 (95)
T PF12621_consen 45 QPILWIPRDPLGVSRQEIEETRKVGVPISDEGAT-L-DEKGKVVWTGP 90 (95)
T ss_pred CCeEEeecCCCCCCHHHHHHhhcCCeEEECCCeE-E-ccCCCEEEecC
Confidence 6789998877655421 122 777776643 2 66788888443
No 43
>PRK04032 hypothetical protein; Provisional
Probab=21.57 E-value=46 Score=24.01 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=19.4
Q ss_pred cccCCCCccCCCCeEEeCCCceE
Q 042187 26 DTLTPASFIRDGEKLVSSAQRFE 48 (116)
Q Consensus 26 ~tl~~G~~L~~~~~LvS~~g~F~ 48 (116)
.-|+-|.++++|+.+.||+++.|
T Consensus 18 ~piD~g~~~~dg~~iiSP~KTwE 40 (159)
T PRK04032 18 TPIDFGKTFVDGRRILGDGKTWR 40 (159)
T ss_pred ccccCCCcCCCCCeeCCCCCcHH
Confidence 34778999999999999999865
No 44
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=21.41 E-value=1.1e+02 Score=16.79 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=10.1
Q ss_pred eEEEecCCcEEEE
Q 042187 89 VLTISNNGNLVLL 101 (116)
Q Consensus 89 ~L~l~~dG~LvL~ 101 (116)
.|.+|..|+|.|.
T Consensus 25 ~LR~Tr~gKLILT 37 (38)
T PF10636_consen 25 RLRITRQGKLILT 37 (38)
T ss_dssp EEEEETTTEEEEE
T ss_pred EeeEccCCcEEEc
Confidence 5888888888774
No 45
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=21.18 E-value=86 Score=17.94 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=12.3
Q ss_pred EEeCCCceEEEEecCCCCCceEEE
Q 042187 40 LVSSAQRFELGFFSPGKSKNRYVG 63 (116)
Q Consensus 40 LvS~~g~F~lGF~~~~~~~~~~l~ 63 (116)
+.+++|.|+--|...+ ..||+-
T Consensus 5 ~~~~nGvFAN~F~~~G--itWYfK 26 (45)
T PF12197_consen 5 MYSSNGVFANSFSDDG--ITWYFK 26 (45)
T ss_dssp EEETT-----EEEETT--EEEEEE
T ss_pred EEcCCCceEEEEEcCC--cEEEEe
Confidence 5689999999998854 557764
No 46
>PF03771 SPDY: Domain of unknown function (DUF317); InterPro: IPR005523 This domain is currently found in streptomyces bacteria, in a set of bacterial proteins with no known function. Most proteins contain two copies of this domain.
Probab=20.89 E-value=2e+02 Score=17.06 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=25.7
Q ss_pred EeCCCceEEEEecCC-CCCceEEEEEeecCCCeEEEEec--CCCC
Q 042187 41 VSSAQRFELGFFSPG-KSKNRYVGLWYQKIPDTVFWVAN--RNSP 82 (116)
Q Consensus 41 vS~~g~F~lGF~~~~-~~~~~~l~Iw~~~~~~tvvW~An--r~~p 82 (116)
.||+|...++|...+ ....+-+ +.........|.|. .+.|
T Consensus 2 ~SPD~~~~~~~~p~~~~~~~W~i--~~~~~~~~~~W~A~F~~~TP 44 (63)
T PF03771_consen 2 TSPDGRAYLQWDPPGDDGAGWRI--AAGAPGDPPGWTATFTPDTP 44 (63)
T ss_pred cCCCcceEEEEecCCCCCCCeEE--eeccCCCCCeEEEEECCCCc
Confidence 589999999999843 2344543 33332266789875 5555
No 47
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=20.39 E-value=98 Score=17.86 Aligned_cols=13 Identities=15% Similarity=0.329 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhh
Q 042187 7 FNIFRSLIFLLSR 19 (116)
Q Consensus 7 ~~~~~~~~ll~~~ 19 (116)
|+.++.++||++.
T Consensus 35 fclilicllli~i 47 (52)
T PF04272_consen 35 FCLILICLLLICI 47 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5556666666553
Done!