BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042191
MAEDKSGTESENKDSAASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVL
ARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALS
SLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ

High Scoring Gene Products

Symbol, full name Information P value
AT2G24330 protein from Arabidopsis thaliana 3.4e-45

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042191
        (170 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2061047 - symbol:AT2G24330 "AT2G24330" species...   475  3.4e-45   1


>TAIR|locus:2061047 [details] [associations]
            symbol:AT2G24330 "AT2G24330" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006403
            eggNOG:NOG115207 InterPro:IPR019273 Pfam:PF10058 EMBL:BT006125
            IPI:IPI00530370 PIR:D84635 RefSeq:NP_180010.1 UniGene:At.39174
            PaxDb:Q9ZQ34 PRIDE:Q9ZQ34 EnsemblPlants:AT2G24330.1 GeneID:816969
            KEGG:ath:AT2G24330 TAIR:At2g24330 HOGENOM:HOG000006400
            InParanoid:Q9ZQ34 OMA:TIGAYIV PhylomeDB:Q9ZQ34
            ProtClustDB:CLSN2683031 Genevestigator:Q9ZQ34 GermOnline:AT2G24330
            Uniprot:Q9ZQ34
        Length = 408

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 99/164 (60%), Positives = 115/164 (70%)

Query:    11 ENKDSAASSAVVGKK----RKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRR 66
             E  DSA   +  G+K    RKG+ SR+WN IFR++ DDFEKRL+ ISKEEA V  RMKRR
Sbjct:    18 EKNDSAVVLSASGEKKTTKRKGLFSRLWNAIFRVRGDDFEKRLKNISKEEATVRNRMKRR 77

Query:    67 SQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFXXXXXXXXXXXX 126
             S T R   R+LI FSV FEVIAV YAIMTTR  DLDWK+R+ R+LPMF            
Sbjct:    78 SITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWKLRSFRILPMFLLPAVAFLLYSS 137

Query:   127 FVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
              V F R+CDR+DQ TLE+L+AE   KI+ELKERTNYY TQQLIQ
Sbjct:   138 LVGFWRMCDRRDQHTLEKLQAEMLGKINELKERTNYYITQQLIQ 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       158   0.00085  106 3  11 22  0.43    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.87u 0.17s 16.04t   Elapsed:  00:00:01
  Total cpu time:  15.87u 0.17s 16.04t   Elapsed:  00:00:01
  Start:  Thu May  9 20:03:19 2013   End:  Thu May  9 20:03:20 2013

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