BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042191
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 65 RRSQTW----RRLTR--HLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVL 111
RR Q W R+L + HL+I + F +A + TR VD +W+ +AL L
Sbjct: 58 RRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLAL 110
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 65 RRSQTW----RRLTR--HLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVL 111
RR Q W R+L + HL+I + F +A + TR VD +W+ +AL L
Sbjct: 45 RRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLAL 97
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 65 RRSQTW----RRLTR--HLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVL 111
RR Q W R+L + HL+I + F +A + TR VD +W+ +AL L
Sbjct: 42 RRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLAL 94
>pdb|3UY8|A Chain A, Designed Protein Ke59 R5_115F
pdb|3UY8|B Chain B, Designed Protein Ke59 R5_115F
Length = 247
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 46 EKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMT 95
E+ L++ + A++A KR+S + + R I ++ E AVG AI+T
Sbjct: 34 ERILEFNKRNNTAIIAVYKRKSPSGLDVERDPIEYAKFMERYAVGLAILT 83
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate
Synthase (Igps) In Complex With
1-(O-Carboxyphenylamino)-1- Deoxyribulose 5'-Phosphate
(Cdrp)
pdb|1A53|A Chain A, Complex Of Indole-3-Glycerolphosphate Synthase From
Sulfolobus Solfataricus With Indole-3-Glycerolphosphate
At 2.0 A Resolution
Length = 247
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 46 EKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMT 95
E+ L++ + A++A KR+S + + R I +S E AVG +I+T
Sbjct: 34 ERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSILT 83
>pdb|2C3Z|A Chain A, Crystal Structure Of A Truncated Variant Of Indole-3-
Glycerol Phosphate Synthase From Sulfolobus
Solfataricus
Length = 222
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 46 EKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMT 95
E+ L++ + A++A KR+S + + R I +S E AVG +I+T
Sbjct: 9 ERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSILT 58
>pdb|1IGS|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus At 2.0 A Resolution
pdb|1JUK|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Trigonal Crystal Form
pdb|1JUL|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Second Orthorhombic Crystal Form
Length = 248
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 46 EKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMT 95
E+ L++ + A++A KR+S + + R I +S E AVG +I+T
Sbjct: 35 ERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSILT 84
>pdb|3NYZ|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NYZ|B Chain B, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NZ1|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
Complexed With Transition State Analog 5-Nitro
Benzotriazole
Length = 261
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 46 EKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMT 95
E+ L++ + A++A KR+S + + R I +S E AVG AI T
Sbjct: 35 ERILEFNKRNITAIIAAYKRKSPSGLDVERDPIEYSKFMERYAVGLAIAT 84
>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A
pdb|3UYC|B Chain B, Designed Protein Ke59 R8_27A
Length = 249
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 46 EKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMT 95
E+ L++ + A++A KR+S + + R I ++ E VG AI+T
Sbjct: 35 ERILEFNKRNNTAIIAVYKRKSPSGLNVERDPIEYAKFMERGVVGLAILT 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,912,159
Number of Sequences: 62578
Number of extensions: 115757
Number of successful extensions: 381
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 19
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)