BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042191
         (170 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ZQ34|Y2433_ARATH Uncharacterized protein At2g24330 OS=Arabidopsis thaliana
           GN=At2g24330 PE=2 SV=1
          Length = 408

 Score =  214 bits (544), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 125/165 (75%), Gaps = 4/165 (2%)

Query: 10  SENKDSAASSAVVGKK----RKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKR 65
            E  DSA   +  G+K    RKG+ SR+WN IFR++ DDFEKRL+ ISKEEA V  RMKR
Sbjct: 17  GEKNDSAVVLSASGEKKTTKRKGLFSRLWNAIFRVRGDDFEKRLKNISKEEATVRNRMKR 76

Query: 66  RSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYS 125
           RS T R   R+LI FSV FEVIAV YAIMTTR  DLDWK+R+ R+LPMFLLPA++ L YS
Sbjct: 77  RSITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWKLRSFRILPMFLLPAVAFLLYS 136

Query: 126 AFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
           + V F R+CDR+DQ TLE+L+AE   KI+ELKERTNYY TQQLIQ
Sbjct: 137 SLVGFWRMCDRRDQHTLEKLQAEMLGKINELKERTNYYITQQLIQ 181


>sp|B3S4I5|LIS1_TRIAD Lissencephaly-1 homolog OS=Trichoplax adhaerens GN=TRIADDRAFT_50647
           PE=3 SV=1
          Length = 409

 Score = 35.4 bits (80), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 14/108 (12%)

Query: 9   ESENKDSAASSAVVGKKRKGIISRIWNGIFRLKRD--DFEKRLQYISKE-EAAVLARMKR 65
           E+  KD++    +  KK  G++ + W  + RL++   D E RL   ++E  + V  R  R
Sbjct: 29  EAFKKDASIPKEIDNKKYSGLLEKKWTSVVRLQKKVMDLELRLNNTTREMNSGVPTRNSR 88

Query: 66  RSQTW--RRLTRHLI------IFSVIFEVIAVGYAIMTTRSVDLDWKM 105
            S  W  R   +H +      I  V+F  +   Y +M + S D   K+
Sbjct: 89  SSNDWIPRPPEKHSLSGHRSPITCVVFHPV---YNVMVSSSEDASMKI 133


>sp|D5GBI7|LIS1_TUBMM Nuclear distribution protein PAC1 OS=Tuber melanosporum (strain
           Mel28) GN=PAC1 PE=3 SV=1
          Length = 452

 Score = 33.5 bits (75), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 20/103 (19%)

Query: 24  KKRKGIISRIWNGIFRLKRD--DFEKRLQYISKE-EAAVLARMKRRS---QTW--RRLTR 75
           KK +G++ + W G+ RL++   + E RL  +  E ++A    + RR+    +W  R   +
Sbjct: 53  KKYEGVLEKKWTGVLRLQKKIMELESRLSSLQSELDSATPTSLTRRNVDPSSWLPRAPAK 112

Query: 76  HL----------IIFSVIFEVIAVGYAIMTTRSVDLDWKMRAL 108
           H+          + F  IF V+A G    T +    DW++  L
Sbjct: 113 HVLTSHRNSINSVAFHPIFSVLASGSDDTTIKI--WDWELGEL 153


>sp|P38878|YHZ2_YEAST Uncharacterized membrane protein YHR192W OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=YHR192W PE=1
           SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 76  HLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICD 135
           +L  + +   V+A+ Y             + AL  +   +L   +     AF +  R+  
Sbjct: 53  NLTFYGIALTVLALSYTYWEYHGYRPYLVVTALLCIGSLILFKWALTKLYAFYNNNRL-- 110

Query: 136 RKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170
               + L +LRA  Q K+++LKE T+Y  T  +IQ
Sbjct: 111 ----RKLAKLRAIHQKKLEKLKEETHYNATSSIIQ 141


>sp|P49450|CENPA_HUMAN Histone H3-like centromeric protein A OS=Homo sapiens GN=CENPA PE=1
           SV=1
          Length = 140

 Score = 30.8 bits (68), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 65  RRSQTW----RRLTR--HLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVL 111
           RR Q W    R+L +  HL+I  + F  +A    +  TR VD +W+ +AL  L
Sbjct: 42  RRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLAL 94


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.133    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,625,746
Number of Sequences: 539616
Number of extensions: 1834895
Number of successful extensions: 6125
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6122
Number of HSP's gapped (non-prelim): 13
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)