Query 042191
Match_columns 170
No_of_seqs 122 out of 157
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5415 Predicted integral mem 99.8 2E-18 4.3E-23 141.3 14.9 123 43-170 11-133 (251)
2 KOG2846 Predicted membrane pro 99.1 1.5E-10 3.2E-15 100.5 6.1 103 62-170 4-108 (328)
3 PF13239 2TM: 2TM domain 93.6 1.3 2.9E-05 30.9 9.4 29 64-92 6-34 (83)
4 PF04678 DUF607: Protein of un 86.6 15 0.00032 29.4 12.7 38 47-84 64-101 (180)
5 COG3105 Uncharacterized protei 83.6 5.2 0.00011 31.1 6.4 31 137-169 38-68 (138)
6 PF04341 DUF485: Protein of un 82.5 12 0.00026 26.7 7.7 19 119-137 61-79 (91)
7 PF05055 DUF677: Protein of un 80.3 42 0.00091 29.8 12.5 17 47-63 146-162 (336)
8 COG2274 SunT ABC-type bacterio 78.5 22 0.00048 34.5 10.3 34 25-58 225-259 (709)
9 PF11902 DUF3422: Protein of u 78.1 23 0.00051 32.3 9.8 42 53-94 337-382 (420)
10 PRK11677 hypothetical protein; 77.7 9.3 0.0002 29.6 6.2 33 135-169 31-63 (134)
11 PF06305 DUF1049: Protein of u 76.3 14 0.00031 24.2 6.1 15 134-148 49-63 (68)
12 PRK09609 hypothetical protein; 75.7 41 0.00088 29.7 10.3 49 100-148 77-127 (312)
13 KOG2846 Predicted membrane pro 74.4 38 0.00083 30.1 9.8 51 47-97 22-72 (328)
14 PF15086 UPF0542: Uncharacteri 74.2 27 0.00059 24.4 7.2 45 112-159 27-71 (74)
15 PF06295 DUF1043: Protein of u 73.9 13 0.00028 28.3 6.0 31 139-169 27-59 (128)
16 PF10166 DUF2368: Uncharacteri 72.7 42 0.0009 25.9 12.9 18 137-154 94-111 (131)
17 PRK01026 tetrahydromethanopter 72.5 31 0.00067 24.4 7.3 50 41-92 13-67 (77)
18 PF14981 FAM165: FAM165 family 69.9 17 0.00038 23.4 4.9 19 133-151 30-48 (51)
19 TIGR02976 phageshock_pspB phag 67.7 6.9 0.00015 27.4 3.0 16 113-128 5-20 (75)
20 PF06305 DUF1049: Protein of u 67.5 32 0.00069 22.5 6.6 32 125-156 36-67 (68)
21 TIGR01149 mtrG N5-methyltetrah 66.6 41 0.00088 23.4 7.4 44 41-86 10-57 (70)
22 TIGR03797 NHPM_micro_ABC2 NHPM 66.6 1.2E+02 0.0026 28.7 12.3 7 39-45 221-227 (686)
23 PF04210 MtrG: Tetrahydrometha 65.5 43 0.00093 23.3 7.2 44 41-86 10-57 (70)
24 PHA02132 hypothetical protein 65.4 32 0.00069 24.2 5.9 52 81-132 18-78 (86)
25 PF13937 DUF4212: Domain of un 61.7 53 0.0011 23.3 6.7 20 122-141 57-76 (81)
26 COG3887 Predicted signaling pr 61.1 83 0.0018 30.4 9.7 42 112-156 39-80 (655)
27 PF12841 YvrJ: YvrJ protein fa 60.8 19 0.00042 22.0 3.7 31 114-158 6-36 (38)
28 PF01956 DUF106: Integral memb 60.0 38 0.00083 26.3 6.4 57 110-166 12-69 (168)
29 PF03908 Sec20: Sec20; InterP 58.2 63 0.0014 22.8 7.6 18 77-94 72-89 (92)
30 TIGR01271 CFTR_protein cystic 56.4 1E+02 0.0022 32.5 10.2 6 29-34 157-162 (1490)
31 KOG2302 T-type voltage-gated C 55.3 79 0.0017 32.8 8.8 17 134-150 1400-1416(1956)
32 PF15188 CCDC-167: Coiled-coil 55.2 43 0.00093 24.0 5.3 26 43-68 39-64 (85)
33 KOG0860 Synaptobrevin/VAMP-lik 52.2 1E+02 0.0022 23.4 8.0 8 43-50 47-54 (116)
34 PRK02654 putative inner membra 52.2 74 0.0016 28.7 7.4 39 120-159 35-73 (375)
35 PF11471 Sugarporin_N: Maltopo 51.7 46 0.001 22.2 4.8 32 40-71 25-56 (60)
36 PF08395 7tm_7: 7tm Chemosenso 50.7 1.3E+02 0.0027 24.0 10.5 8 142-149 217-224 (372)
37 KOG2568 Predicted membrane pro 50.2 81 0.0018 29.8 7.7 23 129-151 353-375 (518)
38 PF04420 CHD5: CHD5-like prote 50.1 25 0.00055 27.6 3.9 22 42-63 62-89 (161)
39 PF06196 DUF997: Protein of un 49.5 90 0.002 21.9 6.6 20 112-131 49-69 (80)
40 COG5415 Predicted integral mem 48.3 1.7E+02 0.0037 24.8 12.8 45 38-84 13-57 (251)
41 COG1422 Predicted membrane pro 48.0 1.6E+02 0.0035 24.4 8.9 26 72-97 119-144 (201)
42 COG1862 YajC Preprotein transl 47.5 40 0.00086 24.7 4.3 25 130-158 22-46 (97)
43 PF06695 Sm_multidrug_ex: Puta 47.5 98 0.0021 23.1 6.6 41 116-156 31-72 (121)
44 PF04971 Lysis_S: Lysis protei 47.2 67 0.0014 22.2 5.0 34 99-138 29-62 (68)
45 KOG3976 Mitochondrial F1F0-ATP 47.0 94 0.002 26.6 6.9 51 109-161 100-150 (247)
46 KOG4253 Tryptophan-rich basic 46.6 43 0.00093 27.0 4.6 15 80-94 104-118 (175)
47 PRK05886 yajC preprotein trans 46.6 42 0.00092 25.1 4.4 22 133-158 20-41 (109)
48 TIGR02976 phageshock_pspB phag 45.6 87 0.0019 21.8 5.6 38 110-147 7-49 (75)
49 TIGR02484 CitB CitB domain pro 45.6 85 0.0018 28.4 6.9 27 68-94 211-241 (372)
50 PF06667 PspB: Phage shock pro 45.4 83 0.0018 22.0 5.4 10 138-147 40-49 (75)
51 PF14256 YwiC: YwiC-like prote 45.0 1.1E+02 0.0024 23.2 6.6 32 63-94 48-79 (129)
52 TIGR00957 MRP_assoc_pro multi 44.4 1.7E+02 0.0036 31.0 9.7 11 27-37 391-401 (1522)
53 COG4064 MtrG Tetrahydromethano 44.2 1.1E+02 0.0024 21.4 6.8 21 41-61 13-36 (75)
54 KOG2895 Uncharacterized conser 43.4 64 0.0014 28.9 5.6 35 120-154 353-387 (408)
55 PF05529 Bap31: B-cell recepto 43.3 1.6E+02 0.0035 23.3 7.7 16 106-121 99-114 (192)
56 PF02173 pKID: pKID domain; I 42.9 9.6 0.00021 23.8 0.3 33 17-58 3-35 (41)
57 KOG3478 Prefoldin subunit 6, K 42.7 91 0.002 23.7 5.6 35 42-76 71-105 (120)
58 COG4139 BtuC ABC-type cobalami 42.5 89 0.0019 27.0 6.1 23 99-124 184-206 (326)
59 TIGR01846 type_I_sec_HlyB type 42.4 3.1E+02 0.0066 26.1 12.1 6 40-45 225-230 (694)
60 PF06703 SPC25: Microsomal sig 42.2 87 0.0019 24.2 5.8 27 112-138 57-83 (162)
61 TIGR01842 type_I_sec_PrtD type 42.0 2.8E+02 0.006 25.4 12.0 9 50-58 102-110 (544)
62 PF01277 Oleosin: Oleosin; In 42.0 87 0.0019 23.8 5.5 37 125-161 73-112 (118)
63 PLN03130 ABC transporter C fam 41.2 2.6E+02 0.0056 29.9 10.5 12 26-37 373-384 (1622)
64 PF12923 RRP7: Ribosomal RNA-p 41.1 57 0.0012 24.8 4.4 38 125-162 87-128 (131)
65 PF15142 INCA1: INCA1 40.9 27 0.00059 27.8 2.7 19 141-160 107-125 (178)
66 COG4068 Uncharacterized protei 40.8 73 0.0016 21.6 4.3 22 63-86 33-54 (64)
67 PF12459 DUF3687: D-Ala-teicho 40.6 46 0.001 20.8 3.2 26 69-94 6-31 (42)
68 PF14992 TMCO5: TMCO5 family 40.1 1.4E+02 0.003 26.1 7.1 24 108-131 248-271 (280)
69 PF14126 DUF4293: Domain of un 40.0 1.8E+02 0.0038 22.6 7.8 24 115-142 120-143 (149)
70 PF10864 DUF2663: Protein of u 39.3 1.8E+02 0.0039 22.5 12.3 22 135-156 78-99 (130)
71 PF05814 DUF843: Baculovirus p 39.3 1.4E+02 0.0031 21.3 6.0 19 137-155 47-65 (83)
72 TIGR03782 Bac_Flav_CT_J Bacter 39.2 2.7E+02 0.0058 24.8 8.8 28 132-159 91-118 (322)
73 PF11812 DUF3333: Domain of un 38.8 98 0.0021 24.4 5.6 15 60-74 2-16 (155)
74 PRK11677 hypothetical protein; 38.6 1.3E+02 0.0027 23.3 6.0 19 137-155 29-47 (134)
75 PF04568 IATP: Mitochondrial A 38.1 65 0.0014 23.7 4.2 19 133-151 65-83 (100)
76 KOG1691 emp24/gp25L/p24 family 38.0 1.8E+02 0.004 24.2 7.2 41 47-87 144-188 (210)
77 PF15145 DUF4577: Domain of un 37.9 57 0.0012 24.9 3.9 18 143-161 97-114 (128)
78 PLN03232 ABC transporter C fam 37.6 3.2E+02 0.007 28.9 10.5 12 26-37 373-384 (1495)
79 PF09972 DUF2207: Predicted me 37.4 2.9E+02 0.0063 24.4 11.3 18 41-58 360-377 (511)
80 PF03907 Spo7: Spo7-like prote 37.4 2.4E+02 0.0053 23.5 8.1 37 59-95 13-51 (207)
81 PF06785 UPF0242: Uncharacteri 36.8 1.3E+02 0.0029 27.1 6.5 26 112-144 42-67 (401)
82 PRK10983 putative inner membra 36.3 42 0.00092 29.8 3.5 45 109-161 323-367 (368)
83 PRK09458 pspB phage shock prot 35.8 1E+02 0.0022 21.6 4.7 10 138-147 40-49 (75)
84 PLN02777 photosystem I P subun 35.7 2.4E+02 0.0051 22.8 8.6 13 146-158 149-161 (167)
85 PF06103 DUF948: Bacterial pro 35.6 1.5E+02 0.0032 20.5 6.7 24 135-158 28-51 (90)
86 COG1422 Predicted membrane pro 34.9 2.7E+02 0.0058 23.2 9.2 17 138-154 70-86 (201)
87 PTZ00265 multidrug resistance 34.4 5.9E+02 0.013 27.0 12.3 11 113-123 204-214 (1466)
88 cd09235 V_Alix Middle V-domain 34.3 57 0.0012 28.5 4.0 33 136-169 194-226 (339)
89 PF06631 DUF1154: Protein of u 34.2 83 0.0018 20.1 3.7 25 131-155 20-44 (47)
90 PF11460 DUF3007: Protein of u 33.6 2E+02 0.0044 21.4 6.6 25 136-160 69-94 (104)
91 PRK06231 F0F1 ATP synthase sub 33.4 2.6E+02 0.0057 22.7 12.2 18 127-144 73-90 (205)
92 PF13038 DUF3899: Domain of un 33.4 31 0.00067 24.2 1.8 7 26-32 23-29 (92)
93 PF03268 DUF267: Caenorhabditi 33.3 1.7E+02 0.0037 26.3 6.7 43 113-155 62-106 (353)
94 PHA02130 hypothetical protein 33.3 18 0.00038 25.1 0.5 20 33-56 62-81 (81)
95 COG3898 Uncharacterized membra 33.1 1.4E+02 0.0031 27.8 6.3 28 76-103 3-32 (531)
96 PRK08456 flagellar motor prote 33.0 3E+02 0.0065 23.2 13.6 51 39-92 118-168 (257)
97 PF14975 DUF4512: Domain of un 32.8 63 0.0014 23.4 3.3 27 110-136 2-28 (88)
98 PF12597 DUF3767: Protein of u 32.5 2.2E+02 0.0047 21.4 9.7 31 74-104 40-72 (118)
99 KOG3269 Predicted membrane pro 32.4 1.1E+02 0.0024 24.9 5.0 19 148-166 160-178 (180)
100 TIGR01194 cyc_pep_trnsptr cycl 32.4 4.1E+02 0.0088 24.5 12.3 8 39-46 98-105 (555)
101 PF06210 DUF1003: Protein of u 32.0 2.1E+02 0.0046 21.2 9.9 27 133-159 54-80 (108)
102 PF05405 Mt_ATP-synt_B: Mitoch 31.3 63 0.0014 24.9 3.4 42 120-161 28-69 (163)
103 PF14257 DUF4349: Domain of un 31.1 3.1E+02 0.0067 22.7 8.4 33 43-76 159-191 (262)
104 PRK00888 ftsB cell division pr 31.0 2.1E+02 0.0046 20.9 6.2 9 150-158 54-62 (105)
105 PF07889 DUF1664: Protein of u 31.0 2.3E+02 0.005 21.7 6.3 25 132-156 67-91 (126)
106 PRK06531 yajC preprotein trans 30.9 84 0.0018 23.6 3.8 21 134-158 19-39 (113)
107 PRK10789 putative multidrug tr 30.6 4.4E+02 0.0095 24.4 12.5 8 114-121 145-152 (569)
108 KOG1693 emp24/gp25L/p24 family 30.5 98 0.0021 25.8 4.4 15 70-84 168-182 (209)
109 PF09771 Tmemb_18A: Transmembr 30.5 2.5E+02 0.0055 21.5 8.9 48 41-94 2-49 (125)
110 PF08946 Osmo_CC: Osmosensory 30.3 1.4E+02 0.0031 19.0 4.2 22 41-62 13-34 (46)
111 PRK12705 hypothetical protein; 30.2 2.1E+02 0.0045 26.9 7.1 18 114-131 9-26 (508)
112 PF10458 Val_tRNA-synt_C: Valy 30.1 1.2E+02 0.0027 20.0 4.3 25 44-68 1-25 (66)
113 PF06295 DUF1043: Protein of u 29.9 2E+02 0.0043 21.6 5.9 14 136-149 28-41 (128)
114 PF09889 DUF2116: Uncharacteri 29.4 1.8E+02 0.0038 19.4 5.2 21 63-85 28-48 (59)
115 PF04678 DUF607: Protein of un 28.7 3E+02 0.0064 21.8 12.1 24 43-66 67-90 (180)
116 PF11431 Transport_MerF: Membr 28.5 91 0.002 19.9 3.1 22 111-132 20-41 (46)
117 PF04999 FtsL: Cell division p 28.4 2.1E+02 0.0046 20.0 6.8 8 142-149 44-51 (97)
118 COG3686 Predicted membrane pro 28.3 2.8E+02 0.006 21.3 6.3 25 24-55 23-47 (125)
119 PF14159 CAAD: CAAD domains of 28.3 2.2E+02 0.0049 20.3 10.4 14 146-159 74-87 (90)
120 PF05513 TraA: TraA; InterPro 28.2 1.6E+02 0.0035 22.4 5.0 38 79-127 78-115 (119)
121 PRK15033 tricarballylate utili 28.0 4.4E+02 0.0096 24.0 8.6 21 68-88 231-251 (389)
122 PRK09109 motC flagellar motor 28.0 3.6E+02 0.0078 22.6 13.6 50 39-91 118-167 (246)
123 PF03208 PRA1: PRA1 family pro 28.0 2.6E+02 0.0057 21.0 8.6 15 34-48 11-29 (153)
124 PF07423 DUF1510: Protein of u 27.7 76 0.0017 26.5 3.4 20 76-95 17-36 (217)
125 PF10883 DUF2681: Protein of u 27.6 2.4E+02 0.0051 20.3 5.7 9 142-150 39-47 (87)
126 PRK05759 F0F1 ATP synthase sub 27.6 2.7E+02 0.0058 21.0 8.2 18 141-158 64-81 (156)
127 PF05969 PSII_Ycf12: Photosyst 27.4 66 0.0014 19.2 2.2 14 111-124 14-27 (33)
128 TIGR02209 ftsL_broad cell divi 27.3 2E+02 0.0043 19.4 6.6 9 150-158 44-52 (85)
129 PF14770 TMEM18: Transmembrane 26.6 2.6E+02 0.0057 21.2 6.0 24 111-134 83-106 (123)
130 PHA02690 hypothetical protein; 26.4 2.5E+02 0.0054 20.1 6.8 31 62-94 30-60 (90)
131 PF04631 Baculo_44: Baculoviru 26.2 1.9E+02 0.0041 26.2 5.8 44 118-162 8-51 (371)
132 COG4327 Predicted membrane pro 26.2 2.6E+02 0.0055 20.7 5.5 17 125-141 66-82 (101)
133 TIGR03592 yidC_oxa1_cterm memb 26.1 3.1E+02 0.0067 21.6 6.6 15 149-163 52-66 (181)
134 PF13974 YebO: YebO-like prote 25.8 2.5E+02 0.0054 20.0 6.5 22 137-158 27-48 (80)
135 PF07332 DUF1469: Protein of u 25.7 2.6E+02 0.0056 20.1 13.6 24 135-158 97-120 (121)
136 PF08566 Pam17: Mitochondrial 25.5 3.7E+02 0.0079 21.8 9.0 16 142-157 111-126 (173)
137 PF14584 DUF4446: Protein of u 25.4 2.6E+02 0.0056 21.9 5.9 37 125-161 27-63 (151)
138 PF14584 DUF4446: Protein of u 25.3 2.4E+02 0.0051 22.1 5.7 39 39-77 38-76 (151)
139 TIGR00219 mreC rod shape-deter 25.2 3.6E+02 0.0077 23.1 7.2 7 115-121 44-50 (283)
140 PF06120 Phage_HK97_TLTM: Tail 24.4 1.8E+02 0.0039 25.5 5.3 15 110-124 18-32 (301)
141 TIGR00954 3a01203 Peroxysomal 24.0 6.3E+02 0.014 24.0 10.8 49 114-163 247-295 (659)
142 COG4949 Uncharacterized membra 24.0 4.5E+02 0.0097 23.7 7.6 40 54-93 338-381 (424)
143 COG1566 EmrA Multidrug resista 23.9 1.6E+02 0.0035 26.3 5.0 39 38-76 82-120 (352)
144 PLN00122 serine/threonine prot 23.4 1.4E+02 0.0031 24.0 4.1 36 39-74 125-160 (170)
145 PF11166 DUF2951: Protein of u 23.3 1.2E+02 0.0026 22.4 3.3 21 107-127 76-96 (98)
146 KOG1655 Protein involved in va 23.2 1.4E+02 0.003 25.0 4.1 16 138-153 124-139 (218)
147 cd01324 cbb3_Oxidase_CcoQ Cyto 23.1 98 0.0021 19.6 2.6 21 78-98 16-36 (48)
148 PRK06743 flagellar motor prote 23.0 4.7E+02 0.01 22.2 13.5 102 40-157 116-223 (254)
149 PRK00247 putative inner membra 23.0 6E+02 0.013 23.4 9.4 14 117-130 37-50 (429)
150 TIGR00958 3a01208 Conjugate Tr 22.9 6.8E+02 0.015 24.0 13.6 6 114-119 309-314 (711)
151 PF04568 IATP: Mitochondrial A 22.8 2.3E+02 0.005 20.8 4.9 31 129-159 64-98 (100)
152 PRK00888 ftsB cell division pr 22.8 2.7E+02 0.0058 20.3 5.2 7 142-148 43-49 (105)
153 PF07010 Endomucin: Endomucin; 22.3 1.2E+02 0.0026 25.9 3.6 29 110-138 190-218 (259)
154 PF08549 SWI-SNF_Ssr4: Fungal 22.3 1.5E+02 0.0033 28.8 4.7 30 133-162 371-400 (669)
155 PRK11546 zraP zinc resistance 22.1 2.3E+02 0.0049 22.2 4.9 25 134-158 44-68 (143)
156 PF06966 DUF1295: Protein of u 22.1 2E+02 0.0043 23.8 4.9 37 115-151 44-80 (235)
157 PF01534 Frizzled: Frizzled/Sm 22.0 1.2E+02 0.0025 26.8 3.7 45 111-159 180-228 (328)
158 PF13687 DUF4153: Domain of un 21.7 4.3E+02 0.0093 21.3 7.7 25 107-131 125-149 (217)
159 COG4988 CydD ABC-type transpor 21.7 5.8E+02 0.013 24.5 8.4 31 116-146 153-187 (559)
160 PF14257 DUF4349: Domain of un 21.5 4.2E+02 0.0091 21.9 6.9 6 116-121 244-249 (262)
161 PRK09848 glucuronide transport 21.1 1.2E+02 0.0026 26.4 3.7 18 114-131 410-427 (448)
162 PHA02047 phage lambda Rz1-like 21.0 3.5E+02 0.0076 20.0 6.7 37 131-168 32-71 (101)
163 KOG4050 Glutamate transporter 21.0 4.6E+02 0.01 21.3 7.7 14 39-52 34-47 (188)
164 KOG3142 Prenylated rab accepto 21.0 3.1E+02 0.0066 22.5 5.7 25 22-46 27-56 (187)
165 PF14163 SieB: Superinfection 20.9 3.8E+02 0.0082 20.3 8.6 15 119-133 44-58 (151)
166 PF13209 DUF4017: Protein of u 20.4 1.5E+02 0.0031 19.8 3.0 7 99-105 28-34 (60)
167 PF15361 RIC3: Resistance to i 20.2 2.1E+02 0.0045 22.4 4.5 14 139-152 130-143 (152)
168 COG3167 PilO Tfp pilus assembl 20.2 4.6E+02 0.0099 21.9 6.5 34 112-147 23-56 (211)
169 TIGR00739 yajC preprotein tran 20.1 1.9E+02 0.0041 20.3 3.8 13 146-158 28-40 (84)
No 1
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=99.80 E-value=2e-18 Score=141.32 Aligned_cols=123 Identities=19% Similarity=0.296 Sum_probs=105.0
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHhhhhhhhHHHHHHHHHH
Q 042191 43 DDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSL 122 (170)
Q Consensus 43 ~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~~~~~~~~~~~w~~r~~~~lp~~~~P~li~l 122 (170)
.+|--.|..|+.+|++++-.+++.|...+.|+.++++||+.++++++.|.||-... ....+.+..++++.+-.|+
T Consensus 11 ~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~-----y~~~~~It~~llgs~slym 85 (251)
T COG5415 11 TKYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHG-----YRPYLVITALLLGSGSLYM 85 (251)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc-----cchhHHHHHHHHhhhHHHH
Confidence 46778999999999999999999999999999999999999999998888872110 0022233344455555678
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCcHhHHhhhC
Q 042191 123 AYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYYTTQQLIQ 170 (170)
Q Consensus 123 ~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~TnY~sT~~LIq 170 (170)
.||++.+||.+++++...+|.+||++|+++||.||++|.|+.|++|||
T Consensus 86 frwal~~lye~r~~r~~~~L~kLra~~rk~l~~LK~e~~y~aT~~ii~ 133 (251)
T COG5415 86 FRWALTKLYEFRNNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQ 133 (251)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996
No 2
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=99.09 E-value=1.5e-10 Score=100.45 Aligned_cols=103 Identities=8% Similarity=0.090 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccCCCchhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 042191 62 RMKRRSQTWRRLTRHLIIFSVIFEVIA--VGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKDQ 139 (170)
Q Consensus 62 ~l~~~~~~~rr~~~~l~lYs~~l~vl~--v~Y~~~~~~~~~~~w~~r~~~~lp~~~~P~li~l~r~~l~~~~~~~~~r~~ 139 (170)
++.+.+++.++ ..++.|++.++++. +.+.++ .+..|..+..+++|++++|++++++++++.+||.|++++++
T Consensus 4 ~~~~~~r~~~~--~~~~~y~~~~~~~~~~i~~~~~----~~~~~q~~~~~~~p~l~~~~I~~~~~~~~~~y~~~~~~r~~ 77 (328)
T KOG2846|consen 4 ALGKWVRGSRN--TFVTKYTSDLYIFTSQIHQLDY----APEKSQSILSQWQPNLGFPGIILTVRRLSYTYFEYRLNRNT 77 (328)
T ss_pred Hhhhhhhcccc--eeeeehhHHHHHHHHHHHhhhc----cCchhHHHHHHHHHHhcchHHHHHHHHHHHhhhheecccch
Confidence 34444444444 45556666665543 344444 78889888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcHhHHhhhC
Q 042191 140 KTLERLRAERQAKIDELKERTNYYTTQQLIQ 170 (170)
Q Consensus 140 ~kLe~Lr~e~kkkIEeLKe~TnY~sT~~LIq 170 (170)
.+|++|+++....++++++.+.|..++.|||
T Consensus 78 ~~lt~L~s~~~~ll~~v~~~~ly~~a~~il~ 108 (328)
T KOG2846|consen 78 LKLTRLKSQKSKLLELVLETKLYKVALNILE 108 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999885
No 3
>PF13239 2TM: 2TM domain
Probab=93.57 E-value=1.3 Score=30.88 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 64 KRRSQTWRRLTRHLIIFSVIFEVIAVGYA 92 (170)
Q Consensus 64 ~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~ 92 (170)
+++.++.+.+..+++.|.++..++++...
T Consensus 6 ~~~v~~~k~fy~Hl~~y~ivn~~l~~in~ 34 (83)
T PF13239_consen 6 KKRVKRRKGFYRHLAVYLIVNSFLIFINL 34 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677778877776655554333
No 4
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=86.61 E-value=15 Score=29.39 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=17.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 47 KRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIF 84 (170)
Q Consensus 47 K~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l 84 (170)
+.|..+.++++.++.....-.....+-..++...++.+
T Consensus 64 ~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~ 101 (180)
T PF04678_consen 64 KRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLAL 101 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665555444444444444434444444433
No 5
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.62 E-value=5.2 Score=31.09 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCcHhHHhhh
Q 042191 137 KDQKTLERLRAERQAKIDELKERTNYYTTQQLI 169 (170)
Q Consensus 137 r~~~kLe~Lr~e~kkkIEeLKe~TnY~sT~~LI 169 (170)
+.|..|++++.+....=+||-+ .|+.|.+|+
T Consensus 38 ~~q~ELe~~K~~ld~~rqel~~--HFa~sAeLl 68 (138)
T COG3105 38 KLQYELEKVKAQLDEYRQELVK--HFARSAELL 68 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 5677888888887777777765 888888886
No 6
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=82.50 E-value=12 Score=26.66 Aligned_cols=19 Identities=0% Similarity=-0.295 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 042191 119 LSSLAYSAFVSFTRICDRK 137 (170)
Q Consensus 119 li~l~r~~l~~~~~~~~~r 137 (170)
.++++-+++..+|-++-|+
T Consensus 61 ~~~~~~~~l~~~Yv~~An~ 79 (91)
T PF04341_consen 61 GQIVFAWVLTWLYVRRANR 79 (91)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4445667777788776655
No 7
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=80.25 E-value=42 Score=29.77 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=7.4
Q ss_pred HHHhhHHHHHHHHHHHH
Q 042191 47 KRLQYISKEEAAVLARM 63 (170)
Q Consensus 47 K~L~~Isk~i~~~~~~l 63 (170)
...+.+-++-..+..+|
T Consensus 146 ~~F~~i~~~~~~Ll~kL 162 (336)
T PF05055_consen 146 HQFQSIHDQQSSLLEKL 162 (336)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445544433344433
No 8
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=78.49 E-value=22 Score=34.53 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=18.5
Q ss_pred ccceeeeeeehhhccCCCChHH-HHHhhHHHHHHH
Q 042191 25 KRKGIISRIWNGIFRLKRDDFE-KRLQYISKEEAA 58 (170)
Q Consensus 25 ~~~g~~s~iw~~~f~~~p~~FE-K~L~~Isk~i~~ 58 (170)
-..++.+++|+.+.+-..+-|| +..-++.....+
T Consensus 225 ld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~e 259 (709)
T COG2274 225 LDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRE 259 (709)
T ss_pred HhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHH
Confidence 3345566677766666666666 333344444444
No 9
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=78.08 E-value=23 Score=32.34 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHH
Q 042191 53 SKEEAAVLARMKRRSQTWRRLTRHLIIFSVIF---EVI-AVGYAIM 94 (170)
Q Consensus 53 sk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l---~vl-~v~Y~~~ 94 (170)
+.+.+++++.|++|.+.+=|+|...=-.|+++ |++ .++|..-
T Consensus 337 e~QN~~LL~SM~rRa~lQLrLQqtVEGLSVvAIsYY~vgL~~y~~k 382 (420)
T PF11902_consen 337 EQQNQDLLASMDRRARLQLRLQQTVEGLSVVAISYYVVGLLGYLLK 382 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 34456678888888888888877766555544 333 2556543
No 10
>PRK11677 hypothetical protein; Provisional
Probab=77.73 E-value=9.3 Score=29.61 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcCcHhHHhhh
Q 042191 135 DRKDQKTLERLRAERQAKIDELKERTNYYTTQQLI 169 (170)
Q Consensus 135 ~~r~~~kLe~Lr~e~kkkIEeLKe~TnY~sT~~LI 169 (170)
....++.|++.+.+...-=+||-+ .|..|.+|+
T Consensus 31 q~~le~eLe~~k~ele~YkqeV~~--HFa~TA~Ll 63 (134)
T PRK11677 31 QQALQYELEKNKAELEEYRQELVS--HFARSAELL 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 345556666666666555555544 788888876
No 11
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=76.31 E-value=14 Score=24.20 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=6.5
Q ss_pred HhhhhHHHHHHHHHH
Q 042191 134 CDRKDQKTLERLRAE 148 (170)
Q Consensus 134 ~~~r~~~kLe~Lr~e 148 (170)
..++.+++++++++|
T Consensus 49 ~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 49 RIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 12
>PRK09609 hypothetical protein; Provisional
Probab=75.75 E-value=41 Score=29.71 Aligned_cols=49 Identities=4% Similarity=-0.067 Sum_probs=30.5
Q ss_pred CchhhHhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHH
Q 042191 100 DLDWKMRALRVLPMFLLPALSSLAYSAFVSFT--RICDRKDQKTLERLRAE 148 (170)
Q Consensus 100 ~~~w~~r~~~~lp~~~~P~li~l~r~~l~~~~--~~~~~r~~~kLe~Lr~e 148 (170)
+..+.+.....++-++.-++.+++.+.+..|| ++++.+.+++.+.++++
T Consensus 77 ~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~~~~~~~~~~i~~~~~~ 127 (312)
T PRK09609 77 VYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKESRIKRYDNKIFKQKEQ 127 (312)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344333333333333456677778888887 67788888888777775
No 13
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=74.41 E-value=38 Score=30.08 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=41.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 042191 47 KRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTR 97 (170)
Q Consensus 47 K~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~~~~~~ 97 (170)
-.|-.++-.|.++.-....-|.....|+-.+.++++++.+..+.|.||.-+
T Consensus 22 ~~~~~~~~~i~~~~~~~~~~q~~~~~~~p~l~~~~I~~~~~~~~~~y~~~~ 72 (328)
T KOG2846|consen 22 SDLYIFTSQIHQLDYAPEKSQSILSQWQPNLGFPGIILTVRRLSYTYFEYR 72 (328)
T ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHhcchHHHHHHHHHHHhhhhee
Confidence 356677889999888888888889999999999999988887777777333
No 14
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=74.15 E-value=27 Score=24.45 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042191 112 PMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKER 159 (170)
Q Consensus 112 p~~~~P~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~ 159 (170)
.+++.|++|.... +.+.-..-+++++ +=++.++++++.|.+.++.
T Consensus 27 ll~LtPlfiisa~--lSwkLaK~ie~~e-re~K~k~Kr~~~i~k~rr~ 71 (74)
T PF15086_consen 27 LLILTPLFIISAV--LSWKLAKAIEKEE-REKKKKAKRQANIAKARRT 71 (74)
T ss_pred HHHHhHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 4455666544322 1211223343444 4466788888888887753
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.92 E-value=13 Score=28.25 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--cCcHhHHhhh
Q 042191 139 QKTLERLRAERQAKIDELKER--TNYYTTQQLI 169 (170)
Q Consensus 139 ~~kLe~Lr~e~kkkIEeLKe~--TnY~sT~~LI 169 (170)
+.+|++=..+.+..+++-|.. +.|..|.+|+
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll 59 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELL 59 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333444444444432 3688888775
No 16
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=72.68 E-value=42 Score=25.90 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 042191 137 KDQKTLERLRAERQAKID 154 (170)
Q Consensus 137 r~~~kLe~Lr~e~kkkIE 154 (170)
..-++|++.|++=...++
T Consensus 94 ayG~kl~RIr~eAE~Il~ 111 (131)
T PF10166_consen 94 AYGTKLQRIREEAERILE 111 (131)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 444567777666555444
No 17
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=72.54 E-value=31 Score=24.38 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCChHHHHHhhHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHH
Q 042191 41 KRDDFEKRLQYIS---KEEAAVLARMKRRSQTWRRL-TRHLIIFSVIFEV-IAVGYA 92 (170)
Q Consensus 41 ~p~~FEK~L~~Is---k~i~~~~~~l~~~~~~~rr~-~~~l~lYs~~l~v-l~v~Y~ 92 (170)
+|++|++..+.|+ .++.-+.+.+-+| .-++. +--=++|++++-+ ++++|.
T Consensus 13 ~~~d~~~i~~rLD~iEeKVEftn~Ei~Qr--~GkkvGRDiGIlYG~viGlli~~i~~ 67 (77)
T PRK01026 13 DPKDFKEIQKRLDEIEEKVEFTNAEIFQR--IGKKVGRDIGILYGLVIGLLIVLVYI 67 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4788987766654 4444444444222 22333 3335677765533 334443
No 18
>PF14981 FAM165: FAM165 family
Probab=69.90 E-value=17 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=13.2
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 042191 133 ICDRKDQKTLERLRAERQA 151 (170)
Q Consensus 133 ~~~~r~~~kLe~Lr~e~kk 151 (170)
|..++.+.++.++++++++
T Consensus 30 yQ~krlEak~~k~~aekk~ 48 (51)
T PF14981_consen 30 YQRKRLEAKLKKLEAEKKK 48 (51)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456777788888877654
No 19
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=67.67 E-value=6.9 Score=27.41 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 042191 113 MFLLPALSSLAYSAFV 128 (170)
Q Consensus 113 ~~~~P~li~l~r~~l~ 128 (170)
++++|++++++--+..
T Consensus 5 fl~~Pliif~ifVap~ 20 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPL 20 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666555443333
No 20
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.46 E-value=32 Score=22.47 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 042191 125 SAFVSFTRICDRKDQKTLERLRAERQAKIDEL 156 (170)
Q Consensus 125 ~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeL 156 (170)
.++..+..++.++..+++++=-++.++.+++|
T Consensus 36 ~l~~~~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 36 WLLSLPSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333434555555555555555555555544
No 21
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=66.63 E-value=41 Score=23.37 Aligned_cols=44 Identities=11% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCChHHHHHhhHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 042191 41 KRDDFEKRLQYISK---EEAAVLARMKRRSQTWRRL-TRHLIIFSVIFEV 86 (170)
Q Consensus 41 ~p~~FEK~L~~Isk---~i~~~~~~l~~~~~~~rr~-~~~l~lYs~~l~v 86 (170)
+|++|++..+.|++ +..-+.+.+-+| .-++. +--=++|++++-+
T Consensus 10 ~~~d~~~i~~rLd~iEeKVEf~~~E~~Qr--~Gkk~GRDiGIlYG~viGl 57 (70)
T TIGR01149 10 EPDEFNEVMKRLDEIEEKVEFVNGEVAQR--IGKKVGRDIGILYGLVIGL 57 (70)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHhhhHHHHHHHHHHHH
Confidence 47899877666644 443334444222 22333 3345677766543
No 22
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=66.60 E-value=1.2e+02 Score=28.74 Aligned_cols=7 Identities=43% Similarity=0.434 Sum_probs=2.6
Q ss_pred cCCCChH
Q 042191 39 RLKRDDF 45 (170)
Q Consensus 39 ~~~p~~F 45 (170)
+.+++.|
T Consensus 221 ~~~~~~~ 227 (686)
T TIGR03797 221 RLPVSFF 227 (686)
T ss_pred cCCHHHH
Confidence 3333333
No 23
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=65.49 E-value=43 Score=23.25 Aligned_cols=44 Identities=14% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCChHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 042191 41 KRDDFEKRLQYI---SKEEAAVLARMKRRSQTWRRL-TRHLIIFSVIFEV 86 (170)
Q Consensus 41 ~p~~FEK~L~~I---sk~i~~~~~~l~~~~~~~rr~-~~~l~lYs~~l~v 86 (170)
+|++|++..+.| ++++.-+.+.+-+|. -++. +--=++|++++-+
T Consensus 10 ~~~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~--GkkiGRDiGIlYG~v~Gl 57 (70)
T PF04210_consen 10 DPDDFNEIMKRLDEIEEKVEFTNAEIAQRA--GKKIGRDIGILYGLVIGL 57 (70)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--hHHhhhHHHHHHHHHHHH
Confidence 578887655544 555555555553332 2333 3335677766533
No 24
>PHA02132 hypothetical protein
Probab=65.38 E-value=32 Score=24.18 Aligned_cols=52 Identities=27% Similarity=0.253 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhc-cCCCchhhH-----hhhhhhhHHH---HHHHHHHHHHHHHHHHH
Q 042191 81 SVIFEVIAVGYAIMTT-RSVDLDWKM-----RALRVLPMFL---LPALSSLAYSAFVSFTR 132 (170)
Q Consensus 81 s~~l~vl~v~Y~~~~~-~~~~~~w~~-----r~~~~lp~~~---~P~li~l~r~~l~~~~~ 132 (170)
.++.||++-+|+++-- |.+..+-.+ .+.++-+++. .|++++++.+++.+.|-
T Consensus 18 a~~vyvl~hg~affdewr~~~pdsk~pa~sl~~vqiyg~ia~awlp~~~~l~~kl~ef~yi 78 (86)
T PHA02132 18 AVMVYVLIHGFAFFDEWRQKRPDSKMPARSLCAVQVYGMIAGAWLPLAIYLVCKLCEFTYI 78 (86)
T ss_pred HHHHHHHHhhHHHHHHHHcCCCCccCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHeehh
Confidence 4455777778877510 001111111 2333445554 69999998888776653
No 25
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=61.67 E-value=53 Score=23.25 Aligned_cols=20 Identities=0% Similarity=0.032 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhhHHH
Q 042191 122 LAYSAFVSFTRICDRKDQKT 141 (170)
Q Consensus 122 l~r~~l~~~~~~~~~r~~~k 141 (170)
++.-++..+|.++.++.+++
T Consensus 57 ~~fviLi~~Ya~~mnrlD~~ 76 (81)
T PF13937_consen 57 IVFVILIFVYAWRMNRLDRK 76 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777766554
No 26
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=61.15 E-value=83 Score=30.39 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 042191 112 PMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDEL 156 (170)
Q Consensus 112 p~~~~P~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeL 156 (170)
|++++-+++.++-+....++... +++..+.|..+-..-+++.
T Consensus 39 ~~l~~~~~~i~~l~~~~~~~~~~---~~~~i~~ls~~~~~~~~~a 80 (655)
T COG3887 39 AVLLLVVFLIFLLLAFTLFYQDS---DQNYISYLSYQAEKSLEEA 80 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44444333444444444444433 3446667766666655554
No 27
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=60.78 E-value=19 Score=21.97 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 042191 114 FLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 114 ~~~P~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
++||+++.+ |..-|-|++|++|.+ -|++|++
T Consensus 6 ~GFPi~va~----------yLL~R~E~kld~L~~----~i~~L~~ 36 (38)
T PF12841_consen 6 VGFPIAVAI----------YLLVRIEKKLDELTE----SINELSE 36 (38)
T ss_pred cCcHHHHHH----------HHHHHHHHHHHHHHH----HHHHHHh
Confidence 567887653 222255677777653 3445543
No 28
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=60.03 E-value=38 Score=26.32 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHhhcCcHhHH
Q 042191 110 VLPMFLLPALSSLAYSAFVSFTRICD-RKDQKTLERLRAERQAKIDELKERTNYYTTQ 166 (170)
Q Consensus 110 ~lp~~~~P~li~l~r~~l~~~~~~~~-~r~~~kLe~Lr~e~kkkIEeLKe~TnY~sT~ 166 (170)
.+|+.+.=+++.+++..+..+-++.. .+...+.+...++.++..+++++.-++....
T Consensus 12 ~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 69 (168)
T PF01956_consen 12 LLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPK 69 (168)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHH
Confidence 44554433444444444444443331 1113445555566666666666655544433
No 29
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=58.19 E-value=63 Score=22.76 Aligned_cols=18 Identities=33% Similarity=0.659 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042191 77 LIIFSVIFEVIAVGYAIM 94 (170)
Q Consensus 77 l~lYs~~l~vl~v~Y~~~ 94 (170)
++++++++.+++++|..+
T Consensus 72 li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 72 LIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444456666666677665
No 30
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=56.37 E-value=1e+02 Score=32.53 Aligned_cols=6 Identities=33% Similarity=0.661 Sum_probs=2.1
Q ss_pred eeeeee
Q 042191 29 IISRIW 34 (170)
Q Consensus 29 ~~s~iw 34 (170)
+.+.|+
T Consensus 157 L~~~iy 162 (1490)
T TIGR01271 157 LFSLIY 162 (1490)
T ss_pred HHHHHH
Confidence 333333
No 31
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.33 E-value=79 Score=32.85 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=12.6
Q ss_pred HhhhhHHHHHHHHHHHH
Q 042191 134 CDRKDQKTLERLRAERQ 150 (170)
Q Consensus 134 ~~~r~~~kLe~Lr~e~k 150 (170)
-.+++||+|++|.++++
T Consensus 1400 ArRreEKrLrrlekkrR 1416 (1956)
T KOG2302|consen 1400 ARRREEKRLRRLEKKRR 1416 (1956)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577888888887776
No 32
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=55.19 E-value=43 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=17.8
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHH
Q 042191 43 DDFEKRLQYISKEEAAVLARMKRRSQ 68 (170)
Q Consensus 43 ~~FEK~L~~Isk~i~~~~~~l~~~~~ 68 (170)
.+.|+++..|.+.....+.+|+.-++
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 46788888887777666666655443
No 33
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.21 E-value=1e+02 Score=23.41 Aligned_cols=8 Identities=38% Similarity=0.646 Sum_probs=5.0
Q ss_pred ChHHHHHh
Q 042191 43 DDFEKRLQ 50 (170)
Q Consensus 43 ~~FEK~L~ 50 (170)
+.+||.|+
T Consensus 47 ~NV~KVlE 54 (116)
T KOG0860|consen 47 ENVEKVLE 54 (116)
T ss_pred HhHHHHHH
Confidence 56666665
No 34
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=52.21 E-value=74 Score=28.74 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042191 120 SSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKER 159 (170)
Q Consensus 120 i~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~ 159 (170)
..++|.++.=++ +.-.+...+...+|-+-+++++|++++
T Consensus 35 TIIVRlIL~PLs-ikQ~KS~~KM~~LQPemqkk~~eIqeK 73 (375)
T PRK02654 35 TLVIRFALYPLS-AGSIRNMRRMKIAQPVMQKRQAEIQER 73 (375)
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHHhCchhhhHHHHHHHH
Confidence 334454444333 333455566666666666666777664
No 35
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=51.68 E-value=46 Score=22.20 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=26.2
Q ss_pred CCCChHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042191 40 LKRDDFEKRLQYISKEEAAVLARMKRRSQTWR 71 (170)
Q Consensus 40 ~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~r 71 (170)
..|.+.|.+|..|++..++.+.+.+.-+.+.+
T Consensus 25 a~~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 25 AAPLTIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34779999999999999998888877766544
No 36
>PF08395 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013604 This family includes a number of gustatory and odorant receptors mainly from insect species such as Anopheles gambiae (African malaria mosquito) and Drosophila melanogaster (Fruit fly). They are classified as G-protein-coupled receptors (GPCRs), or seven-transmembrane receptors. They show high sequence divergence, consistent with an ancient origin for the family [, ]. ; GO: 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=50.71 E-value=1.3e+02 Score=23.99 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 042191 142 LERLRAER 149 (170)
Q Consensus 142 Le~Lr~e~ 149 (170)
|++++..|
T Consensus 217 l~~l~~~~ 224 (372)
T PF08395_consen 217 LRKLRRLH 224 (372)
T ss_pred HHHHHHHH
Confidence 33444433
No 37
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=50.24 E-value=81 Score=29.75 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=17.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 042191 129 SFTRICDRKDQKTLERLRAERQA 151 (170)
Q Consensus 129 ~~~~~~~~r~~~kLe~Lr~e~kk 151 (170)
.|+-|......+++++||.+|+-
T Consensus 353 ~f~~wIF~SL~~Tlk~Lr~rRn~ 375 (518)
T KOG2568|consen 353 AFIYWIFISLAKTLKKLRLRRNI 375 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777899999999998764
No 38
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=50.07 E-value=25 Score=27.59 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=10.3
Q ss_pred CChHHH------HHhhHHHHHHHHHHHH
Q 042191 42 RDDFEK------RLQYISKEEAAVLARM 63 (170)
Q Consensus 42 p~~FEK------~L~~Isk~i~~~~~~l 63 (170)
+|+|-| .+..+++|++++.+.+
T Consensus 62 qDeFAkwaKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 62 QDEFAKWAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566653 3334444444433333
No 39
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=49.47 E-value=90 Score=21.95 Aligned_cols=20 Identities=20% Similarity=0.017 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHH-HHH
Q 042191 112 PMFLLPALSSLAYSAFV-SFT 131 (170)
Q Consensus 112 p~~~~P~li~l~r~~l~-~~~ 131 (170)
-.+++|++..++-..+. .+|
T Consensus 49 SCi~~~il~~~l~~~~vk~~F 69 (80)
T PF06196_consen 49 SCIGGPILFIILVWLMVKFFF 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 34556776555444433 444
No 40
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=48.28 E-value=1.7e+02 Score=24.78 Aligned_cols=45 Identities=7% Similarity=0.080 Sum_probs=31.6
Q ss_pred ccCCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 38 FRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIF 84 (170)
Q Consensus 38 f~~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l 84 (170)
|+.+-+-.|.++++++..+...++.+++-+ .|-.+..+.+|.+.+
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~~qs~l~~~~--~r~tv~slAl~~l~~ 57 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKKSQSILSQWQ--SRLTVYSLALTVLAL 57 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHH
Confidence 456667788888888888877777776664 445667777776543
No 41
>COG1422 Predicted membrane protein [Function unknown]
Probab=47.99 E-value=1.6e+02 Score=24.43 Aligned_cols=26 Identities=0% Similarity=0.108 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 042191 72 RLTRHLIIFSVIFEVIAVGYAIMTTR 97 (170)
Q Consensus 72 r~~~~l~lYs~~l~vl~v~Y~~~~~~ 97 (170)
..+.+--+|.+.+.++++.|.++...
T Consensus 119 k~qfkPM~~~~v~tI~~F~Wl~~~~~ 144 (201)
T COG1422 119 KMQFKPMLYISVLTIPFFAWLRWFVG 144 (201)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 33445667777776666666554333
No 42
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=47.49 E-value=40 Score=24.73 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=14.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 042191 130 FTRICDRKDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 130 ~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
||-+.++.++++ +++|++-+++|++
T Consensus 22 fyFli~RPQrKr----~K~~~~ml~sL~k 46 (97)
T COG1862 22 FYFLIIRPQRKR----MKEHQELLNSLKK 46 (97)
T ss_pred HHHhhcCHHHHH----HHHHHHHHHhccC
Confidence 333445444443 5677888888775
No 43
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=47.47 E-value=98 Score=23.12 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHH
Q 042191 116 LPALSSLAYSAFVSFTRIC-DRKDQKTLERLRAERQAKIDEL 156 (170)
Q Consensus 116 ~P~li~l~r~~l~~~~~~~-~~r~~~kLe~Lr~e~kkkIEeL 156 (170)
.|+++.++.++..++.++. .++-.+++++--.++++++|+.
T Consensus 31 vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~ky 72 (121)
T PF06695_consen 31 VPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKY 72 (121)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777666554322 2223334444444466666653
No 44
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=47.25 E-value=67 Score=22.20 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=19.6
Q ss_pred CCchhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042191 99 VDLDWKMRALRVLPMFLLPALSSLAYSAFVSFTRICDRKD 138 (170)
Q Consensus 99 ~~~~w~~r~~~~lp~~~~P~li~l~r~~l~~~~~~~~~r~ 138 (170)
.|.+|. .+. +++-+++.++..+.+.||+.+.+|.
T Consensus 29 sp~qW~--aIG----vi~gi~~~~lt~ltN~YFK~k~drr 62 (68)
T PF04971_consen 29 SPSQWA--AIG----VIGGIFFGLLTYLTNLYFKIKEDRR 62 (68)
T ss_pred Ccccch--hHH----HHHHHHHHHHHHHhHhhhhhhHhhh
Confidence 567786 222 2233555666677777886655443
No 45
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=47.02 E-value=94 Score=26.57 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 042191 109 RVLPMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTN 161 (170)
Q Consensus 109 ~~lp~~~~P~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~Tn 161 (170)
..+.+++++ ++.++++...+-.|.+..+++++..+++-+++.|.++.+..+
T Consensus 100 ~~~s~lgl~--~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id 150 (247)
T KOG3976|consen 100 STLSFLGLT--GLAIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAID 150 (247)
T ss_pred hhhHHHHHH--HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444443 345566666777888889999999999999999888887654
No 46
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=46.63 E-value=43 Score=26.96 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 042191 80 FSVIFEVIAVGYAIM 94 (170)
Q Consensus 80 Ys~~l~vl~v~Y~~~ 94 (170)
.|+.+|++-.+|...
T Consensus 104 lSv~f~vl~~~~~~~ 118 (175)
T KOG4253|consen 104 LSVAFYVLKIMYGKT 118 (175)
T ss_pred HHHHHHHHHHHHhhc
Confidence 377788887777654
No 47
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=46.59 E-value=42 Score=25.09 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=13.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHh
Q 042191 133 ICDRKDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 133 ~~~~r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
+.++.++++ +++|++-++.||.
T Consensus 20 ~~iRPQkKr----~K~~~~m~~~Lk~ 41 (109)
T PRK05886 20 FASRRQRKA----MQATIDLHESLQP 41 (109)
T ss_pred HHccHHHHH----HHHHHHHHHhcCC
Confidence 344444433 5677777777765
No 48
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=45.58 E-value=87 Score=21.85 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHH
Q 042191 110 VLPMFLLPALSSLAYSAFVSFTRICD-----RKDQKTLERLRA 147 (170)
Q Consensus 110 ~lp~~~~P~li~l~r~~l~~~~~~~~-----~r~~~kLe~Lr~ 147 (170)
.+|+++|-+++..+.-.+++...+.. ..++.+|++|-+
T Consensus 7 ~~Pliif~ifVap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~ 49 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLILHYRSKRKTAASLSTDDQALLQELYA 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Confidence 34666664444444444443333322 224455555543
No 49
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=45.57 E-value=85 Score=28.38 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 042191 68 QTWRRLTRHLIIFSVIFEVIA----VGYAIM 94 (170)
Q Consensus 68 ~~~rr~~~~l~lYs~~l~vl~----v~Y~~~ 94 (170)
...|+.-+++++|++++..++ .+|-|.
T Consensus 211 ~~~Rr~~H~l~~yGF~l~f~aT~va~~yh~~ 241 (372)
T TIGR02484 211 SHRRRILHHLLAGGFGLTFLSTVAAFVYHHL 241 (372)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999886554 355554
No 50
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=45.40 E-value=83 Score=22.00 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=5.8
Q ss_pred hHHHHHHHHH
Q 042191 138 DQKTLERLRA 147 (170)
Q Consensus 138 ~~~kLe~Lr~ 147 (170)
++..|++|-.
T Consensus 40 d~~~L~~L~~ 49 (75)
T PF06667_consen 40 DEQRLQELYE 49 (75)
T ss_pred HHHHHHHHHH
Confidence 4556666644
No 51
>PF14256 YwiC: YwiC-like protein
Probab=45.03 E-value=1.1e+02 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 63 MKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIM 94 (170)
Q Consensus 63 l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~~~ 94 (170)
+++++++.++...-...|+++..++.+.....
T Consensus 48 ~k~r~~~~~~~~~~~~~Yg~~a~~~~l~~l~~ 79 (129)
T PF14256_consen 48 LKQRRRRRPRYLKWALIYGAIALVFGLPALLY 79 (129)
T ss_pred HhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445556888888777666544444
No 52
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=44.37 E-value=1.7e+02 Score=31.02 Aligned_cols=11 Identities=0% Similarity=0.353 Sum_probs=4.2
Q ss_pred ceeeeeeehhh
Q 042191 27 KGIISRIWNGI 37 (170)
Q Consensus 27 ~g~~s~iw~~~ 37 (170)
+++.+.|++..
T Consensus 391 ~~L~~~iy~K~ 401 (1522)
T TIGR00957 391 TAVMGAVYRKA 401 (1522)
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 53
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=44.21 E-value=1.1e+02 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=11.7
Q ss_pred CCChHHHHHh---hHHHHHHHHHH
Q 042191 41 KRDDFEKRLQ---YISKEEAAVLA 61 (170)
Q Consensus 41 ~p~~FEK~L~---~Isk~i~~~~~ 61 (170)
+||+|++.-+ .|+++..-+..
T Consensus 13 ~~~dfne~~kRLdeieekvef~~~ 36 (75)
T COG4064 13 DPDDFNEIHKRLDEIEEKVEFVNG 36 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5899986544 44444433333
No 54
>KOG2895 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.44 E-value=64 Score=28.94 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 042191 120 SSLAYSAFVSFTRICDRKDQKTLERLRAERQAKID 154 (170)
Q Consensus 120 i~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIE 154 (170)
.|.+.-+...+-.-..++-+..+|.||+|.|..=|
T Consensus 353 ~wavwNGasyyidv~grr~~~e~e~l~q~lqp~~~ 387 (408)
T KOG2895|consen 353 SWAVWNGASYYIDVMGRRVIQEEEKLKQELQPIEE 387 (408)
T ss_pred HHhhcCCceeehhhhhHHHHHHHHHHHHhcCCChh
Confidence 34444333344455566777888888888776544
No 55
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.32 E-value=1.6e+02 Score=23.26 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=8.3
Q ss_pred hhhhhhhHHHHHHHHH
Q 042191 106 RALRVLPMFLLPALSS 121 (170)
Q Consensus 106 r~~~~lp~~~~P~li~ 121 (170)
++++-+.+.++-++.+
T Consensus 99 raQRN~YIsGf~LfL~ 114 (192)
T PF05529_consen 99 RAQRNMYISGFALFLS 114 (192)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 6666555555544433
No 56
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=42.87 E-value=9.6 Score=23.82 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=21.1
Q ss_pred CchhhhhcccceeeeeeehhhccCCCChHHHHHhhHHHHHHH
Q 042191 17 ASSAVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAA 58 (170)
Q Consensus 17 ~~~~~~~~~~~g~~s~iw~~~f~~~p~~FEK~L~~Isk~i~~ 58 (170)
.++...-+++.+++|| .| +|-|.|..|+.++..
T Consensus 3 ~~s~~~~~krReiLsR--------RP-SYRKIlndLs~~~~~ 35 (41)
T PF02173_consen 3 SDSEEDSQKRREILSR--------RP-SYRKILNDLSSEDTG 35 (41)
T ss_dssp -----HHHHHHHHHTT--------ST-HHHHHHHHHHHH---
T ss_pred cccccchHHHHHHHhh--------Cc-hHHHHHHHhcccccc
Confidence 3455566778899997 34 999999999887655
No 57
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=42.72 E-value=91 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=26.7
Q ss_pred CChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 42 RDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRH 76 (170)
Q Consensus 42 p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~ 76 (170)
.++++|+|+-|+++|..+++.++..+.-.-..+..
T Consensus 71 r~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~ 105 (120)
T KOG3478|consen 71 RTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREA 105 (120)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998887666544444333
No 58
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism]
Probab=42.46 E-value=89 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCchhhHhhhhhhhHHHHHHHHHHHH
Q 042191 99 VDLDWKMRALRVLPMFLLPALSSLAY 124 (170)
Q Consensus 99 ~~~~w~~r~~~~lp~~~~P~li~l~r 124 (170)
...+|. +..+.+++.|++||+.-
T Consensus 184 ~GVdW~---Q~~L~La~~PvvIWl~~ 206 (326)
T COG4139 184 GGVDWR---QSWLMLALIPVLIWICC 206 (326)
T ss_pred cCccHH---HHHHHHHHHHHHHHhhh
Confidence 355665 34556778899999753
No 59
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=42.42 E-value=3.1e+02 Score=26.07 Aligned_cols=6 Identities=33% Similarity=0.307 Sum_probs=2.1
Q ss_pred CCCChH
Q 042191 40 LKRDDF 45 (170)
Q Consensus 40 ~~p~~F 45 (170)
.+++.|
T Consensus 225 l~~~~f 230 (694)
T TIGR01846 225 LPLGYF 230 (694)
T ss_pred CCHHHc
Confidence 333333
No 60
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=42.19 E-value=87 Score=24.22 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042191 112 PMFLLPALSSLAYSAFVSFTRICDRKD 138 (170)
Q Consensus 112 p~~~~P~li~l~r~~l~~~~~~~~~r~ 138 (170)
|+.+..+++|++-.++-.+|.+..+++
T Consensus 57 ~~~~~~v~~YfiLs~il~~~~~~~ek~ 83 (162)
T PF06703_consen 57 PYLIICVILYFILSGILTLYSYFVEKD 83 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566677778888777777777766543
No 61
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=42.03 E-value=2.8e+02 Score=25.44 Aligned_cols=9 Identities=0% Similarity=-0.149 Sum_probs=3.4
Q ss_pred hhHHHHHHH
Q 042191 50 QYISKEEAA 58 (170)
Q Consensus 50 ~~Isk~i~~ 58 (170)
..+..++++
T Consensus 102 ~~~~~d~~~ 110 (544)
T TIGR01842 102 LQALRDLDQ 110 (544)
T ss_pred HHHHHHHHH
Confidence 333333333
No 62
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=42.00 E-value=87 Score=23.82 Aligned_cols=37 Identities=5% Similarity=0.079 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHhhcC
Q 042191 125 SAFVSFTRICDRKD---QKTLERLRAERQAKIDELKERTN 161 (170)
Q Consensus 125 ~~l~~~~~~~~~r~---~~kLe~Lr~e~kkkIEeLKe~Tn 161 (170)
..+.|.|+|...+. .++++.-|..-+++-+.+++++.
T Consensus 73 s~lsW~~~y~rg~~~~~~~q~d~Ak~ri~d~a~~v~~kak 112 (118)
T PF01277_consen 73 SSLSWMYNYFRGRHPPGPDQLDYAKRRIADTASYVGQKAK 112 (118)
T ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 56678888887666 66899999888988888998875
No 63
>PLN03130 ABC transporter C family member; Provisional
Probab=41.17 E-value=2.6e+02 Score=29.93 Aligned_cols=12 Identities=8% Similarity=0.396 Sum_probs=4.9
Q ss_pred cceeeeeeehhh
Q 042191 26 RKGIISRIWNGI 37 (170)
Q Consensus 26 ~~g~~s~iw~~~ 37 (170)
++++.+.|++..
T Consensus 373 r~~L~~~i~~k~ 384 (1622)
T PLN03130 373 RSTLVAAVFRKS 384 (1622)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 64
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=41.07 E-value=57 Score=24.78 Aligned_cols=38 Identities=24% Similarity=0.436 Sum_probs=28.1
Q ss_pred HHHHHHHHHH-hhhhHHHHHHHHHHH---HHHHHHHHhhcCc
Q 042191 125 SAFVSFTRIC-DRKDQKTLERLRAER---QAKIDELKERTNY 162 (170)
Q Consensus 125 ~~l~~~~~~~-~~r~~~kLe~Lr~e~---kkkIEeLKe~TnY 162 (170)
..+.-||+|. .++..+.|.+|+.+- +++|++||+.-+|
T Consensus 87 k~~~~FYrFQ~RE~kk~~l~eLrkkFeeDK~ki~~mk~~RkF 128 (131)
T PF12923_consen 87 KELEDFYRFQIREKKKNELAELRKKFEEDKKKIEQMKAARKF 128 (131)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4455688775 455666888898765 7899999988766
No 65
>PF15142 INCA1: INCA1
Probab=40.86 E-value=27 Score=27.81 Aligned_cols=19 Identities=53% Similarity=0.656 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 042191 141 TLERLRAERQAKIDELKERT 160 (170)
Q Consensus 141 kLe~Lr~e~kkkIEeLKe~T 160 (170)
+|||||. +|.+|+|||++.
T Consensus 107 HLEDLRR-RQriInElKkAq 125 (178)
T PF15142_consen 107 HLEDLRR-RQRIINELKKAQ 125 (178)
T ss_pred HHHHHHH-HHHHHHHHHHhh
Confidence 7999986 588999999874
No 66
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=40.82 E-value=73 Score=21.57 Aligned_cols=22 Identities=9% Similarity=0.421 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 63 MKRRSQTWRRLTRHLIIFSVIFEV 86 (170)
Q Consensus 63 l~~~~~~~rr~~~~l~lYs~~l~v 86 (170)
|.+.|++.|++ .+++|.+.+.+
T Consensus 33 l~ker~R~r~~--~~~~~li~aLi 54 (64)
T COG4068 33 LNKERKRQRNF--MILMFLILALI 54 (64)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHH
Confidence 44555555655 35566555443
No 67
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=40.62 E-value=46 Score=20.84 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 69 TWRRLTRHLIIFSVIFEVIAVGYAIM 94 (170)
Q Consensus 69 ~~rr~~~~l~lYs~~l~vl~v~Y~~~ 94 (170)
..-++..+-++|.+++.+|+..|.|.
T Consensus 6 ~~~~fi~~T~fYf~Ill~L~ylYgy~ 31 (42)
T PF12459_consen 6 PAVKFIGKTLFYFAILLALIYLYGYS 31 (42)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677788888988888888777764
No 68
>PF14992 TMCO5: TMCO5 family
Probab=40.08 E-value=1.4e+02 Score=26.06 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=15.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 042191 108 LRVLPMFLLPALSSLAYSAFVSFT 131 (170)
Q Consensus 108 ~~~lp~~~~P~li~l~r~~l~~~~ 131 (170)
..+||.+++---.|=+|.++.=|.
T Consensus 248 ~~~LP~~L~R~tlw~LR~~l~PfL 271 (280)
T PF14992_consen 248 EDVLPKMLSRRTLWRLREFLFPFL 271 (280)
T ss_pred HHHhHHhcchhHHHHHHHHHhhhh
Confidence 346677776666777777666554
No 69
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=39.99 E-value=1.8e+02 Score=22.61 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 042191 115 LLPALSSLAYSAFVSFTRICDRKDQKTL 142 (170)
Q Consensus 115 ~~P~li~l~r~~l~~~~~~~~~r~~~kL 142 (170)
.+|++..++..+- ++-+++||+=.
T Consensus 120 ~lp~vaii~~~LA----~r~I~kDEkLV 143 (149)
T PF14126_consen 120 FLPLVAIIFLWLA----NRAIKKDEKLV 143 (149)
T ss_pred HHHHHHHHHHHHH----HHHhHHHHHHH
Confidence 3455544333322 34556666533
No 70
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=39.31 E-value=1.8e+02 Score=22.50 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 042191 135 DRKDQKTLERLRAERQAKIDEL 156 (170)
Q Consensus 135 ~~r~~~kLe~Lr~e~kkkIEeL 156 (170)
-.+.++.=++-.+-|-+.||+=
T Consensus 78 ~kK~eKAEkefhaLRcEiI~kS 99 (130)
T PF10864_consen 78 KKKEEKAEKEFHALRCEIIQKS 99 (130)
T ss_pred HhhHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444445555543
No 71
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=39.27 E-value=1.4e+02 Score=21.35 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 042191 137 KDQKTLERLRAERQAKIDE 155 (170)
Q Consensus 137 r~~~kLe~Lr~e~kkkIEe 155 (170)
+.|..-.+|+.+..+++.+
T Consensus 47 kteS~~~dL~t~k~K~~KK 65 (83)
T PF05814_consen 47 KTESTPQDLQTEKAKSIKK 65 (83)
T ss_pred CCCCcHHHHhhhhhhhHHH
Confidence 7777788888876555543
No 72
>TIGR03782 Bac_Flav_CT_J Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6.
Probab=39.23 E-value=2.7e+02 Score=24.78 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=21.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042191 132 RICDRKDQKTLERLRAERQAKIDELKER 159 (170)
Q Consensus 132 ~~~~~r~~~kLe~Lr~e~kkkIEeLKe~ 159 (170)
+-.-+.++-.++.||+|+++..+|-+.+
T Consensus 91 ~~m~~~q~~dl~~l~~qkd~L~~e~~~r 118 (322)
T TIGR03782 91 HSMLEGQTLDMNRYREQKDKLEYEAMVR 118 (322)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677789999999988877777554
No 73
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=38.83 E-value=98 Score=24.43 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 042191 60 LARMKRRSQTWRRLT 74 (170)
Q Consensus 60 ~~~l~~~~~~~rr~~ 74 (170)
.+++++|.+..||++
T Consensus 2 ~~~lkkR~~~e~rFr 16 (155)
T PF11812_consen 2 DARLKKRYRAERRFR 16 (155)
T ss_pred chHHHHHHHHHHHHH
Confidence 457888888888876
No 74
>PRK11677 hypothetical protein; Provisional
Probab=38.59 E-value=1.3e+02 Score=23.35 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 042191 137 KDQKTLERLRAERQAKIDE 155 (170)
Q Consensus 137 r~~~kLe~Lr~e~kkkIEe 155 (170)
+.++.|+.=..+-+..+|+
T Consensus 29 ~~q~~le~eLe~~k~ele~ 47 (134)
T PRK11677 29 RQQQALQYELEKNKAELEE 47 (134)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 75
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.10 E-value=65 Score=23.75 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=11.7
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 042191 133 ICDRKDQKTLERLRAERQA 151 (170)
Q Consensus 133 ~~~~r~~~kLe~Lr~e~kk 151 (170)
|..+++..+|+.||+++++
T Consensus 65 Y~r~~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 65 YFRKKEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555677777776555
No 76
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.95 E-value=1.8e+02 Score=24.25 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 042191 47 KRLQYISKEEAAVLARMKRRSQTWRRL----TRHLIIFSVIFEVI 87 (170)
Q Consensus 47 K~L~~Isk~i~~~~~~l~~~~~~~rr~----~~~l~lYs~~l~vl 87 (170)
+.|+++...|++=...|+.|....|-. ..+...||+.-.++
T Consensus 144 rrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fSi~Sl~v 188 (210)
T KOG1691|consen 144 RRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFSILSLVV 188 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 566777778877677777777765543 55666666544333
No 77
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=37.87 E-value=57 Score=24.87 Aligned_cols=18 Identities=50% Similarity=0.625 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 042191 143 ERLRAERQAKIDELKERTN 161 (170)
Q Consensus 143 e~Lr~e~kkkIEeLKe~Tn 161 (170)
.+|-+| .+-|||||+.-+
T Consensus 97 rRL~aE-gKdIdeLKKiN~ 114 (128)
T PF15145_consen 97 RRLTAE-GKDIDELKKINS 114 (128)
T ss_pred HHHHhc-cCCHHHHHHHHH
Confidence 445666 456888888643
No 78
>PLN03232 ABC transporter C family member; Provisional
Probab=37.63 E-value=3.2e+02 Score=28.89 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=5.0
Q ss_pred cceeeeeeehhh
Q 042191 26 RKGIISRIWNGI 37 (170)
Q Consensus 26 ~~g~~s~iw~~~ 37 (170)
++.+.+.|++..
T Consensus 373 r~~l~~~i~~k~ 384 (1495)
T PLN03232 373 RSTLVAAIFHKS 384 (1495)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 79
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=37.40 E-value=2.9e+02 Score=24.36 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=11.3
Q ss_pred CCChHHHHHhhHHHHHHH
Q 042191 41 KRDDFEKRLQYISKEEAA 58 (170)
Q Consensus 41 ~p~~FEK~L~~Isk~i~~ 58 (170)
+...|.+.++...+.+.+
T Consensus 360 ~~~~~~~~~~~~~~~i~~ 377 (511)
T PF09972_consen 360 KSKRFYKAFKKWQEAIKK 377 (511)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 346677677666666554
No 80
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=37.39 E-value=2.4e+02 Score=23.48 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Q 042191 59 VLARMKRRSQTWRRLTRHLIIFSV--IFEVIAVGYAIMT 95 (170)
Q Consensus 59 ~~~~l~~~~~~~rr~~~~l~lYs~--~l~vl~v~Y~~~~ 95 (170)
+|++|+.+-..++.-+++-+++.+ ++++..++|..+.
T Consensus 13 lEesLR~q~~~lr~rrrkyt~FL~~L~~~i~~~~y~lf~ 51 (207)
T PF03907_consen 13 LEESLRQQYLQLRARRRKYTFFLSLLCLWIAFFFYALFF 51 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555544444444444444433 3344557776553
No 81
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.77 E-value=1.3e+02 Score=27.11 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 042191 112 PMFLLPALSSLAYSAFVSFTRICDRKDQKTLER 144 (170)
Q Consensus 112 p~~~~P~li~l~r~~l~~~~~~~~~r~~~kLe~ 144 (170)
+.|+||++. .+.|||. +.+.++.|+.
T Consensus 42 ~~f~f~~is-----s~gwff~--i~~re~qlk~ 67 (401)
T PF06785_consen 42 GYFVFSIIS-----SLGWFFA--IGRREKQLKT 67 (401)
T ss_pred ceeehHHHH-----HhHHHHH--hhHHHHHHHH
Confidence 345555543 3344543 3344445543
No 82
>PRK10983 putative inner membrane protein; Provisional
Probab=36.30 E-value=42 Score=29.76 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 042191 109 RVLPMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTN 161 (170)
Q Consensus 109 ~~lp~~~~P~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~Tn 161 (170)
...+++++|++..+++.++..|- .+.. .-..+-++.+|||.|.++
T Consensus 323 G~~G~~lgp~i~a~~~~l~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~ 367 (368)
T PRK10983 323 GMIGLFIGPVVLAVSYRLFSAWV---HEVP-----PPTDQPEEILEELEEIEK 367 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcCC-----CCCCChhHHHHHHHhccC
Confidence 45677788888888877766443 2111 334455678888877653
No 83
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.76 E-value=1e+02 Score=21.64 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=6.1
Q ss_pred hHHHHHHHHH
Q 042191 138 DQKTLERLRA 147 (170)
Q Consensus 138 ~~~kLe~Lr~ 147 (170)
++.+|++|-+
T Consensus 40 d~~~L~~L~~ 49 (75)
T PRK09458 40 EQQRLAQLTE 49 (75)
T ss_pred HHHHHHHHHH
Confidence 5566776654
No 84
>PLN02777 photosystem I P subunit (PSI-P)
Probab=35.67 E-value=2.4e+02 Score=22.80 Aligned_cols=13 Identities=23% Similarity=0.228 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q 042191 146 RAERQAKIDELKE 158 (170)
Q Consensus 146 r~e~kkkIEeLKe 158 (170)
|++.-++|+++|+
T Consensus 149 ReeL~~ki~~lk~ 161 (167)
T PLN02777 149 REALIEKIKDTYK 161 (167)
T ss_pred HHHHHHHHHHHHH
Confidence 3455566666665
No 85
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=35.63 E-value=1.5e+02 Score=20.49 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 042191 135 DRKDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 135 ~~r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
.+..++.+++++.+-....+|..+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ 51 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEIND 51 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345555566665555554444443
No 86
>COG1422 Predicted membrane protein [Function unknown]
Probab=34.90 E-value=2.7e+02 Score=23.16 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042191 138 DQKTLERLRAERQAKID 154 (170)
Q Consensus 138 ~~~kLe~Lr~e~kkkIE 154 (170)
++++++++|++-++-=|
T Consensus 70 D~ekm~~~qk~m~efq~ 86 (201)
T COG1422 70 DQEKMKELQKMMKEFQK 86 (201)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 44555555554443333
No 87
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=34.38 E-value=5.9e+02 Score=27.04 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 042191 113 MFLLPALSSLA 123 (170)
Q Consensus 113 ~~~~P~li~l~ 123 (170)
++++|+++++.
T Consensus 204 l~~~pl~~~~~ 214 (1466)
T PTZ00265 204 TCVFPLIYICG 214 (1466)
T ss_pred HHHHHHHHHHH
Confidence 44456554433
No 88
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=34.31 E-value=57 Score=28.53 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCcHhHHhhh
Q 042191 136 RKDQKTLERLRAERQAKIDELKERTNYYTTQQLI 169 (170)
Q Consensus 136 ~r~~~kLe~Lr~e~kkkIEeLKe~TnY~sT~~LI 169 (170)
+..-++|+.|+++|...+++||++ +.+-+..||
T Consensus 194 r~~l~~l~~lk~eR~~~~~~Lk~~-~dDI~~~ll 226 (339)
T cd09235 194 RQLMEQVETIKAEREVIESELKSA-TFDMKSKFL 226 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccccHHHHH
Confidence 455568999999999999999888 668888876
No 89
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=34.22 E-value=83 Score=20.15 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=18.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHH
Q 042191 131 TRICDRKDQKTLERLRAERQAKIDE 155 (170)
Q Consensus 131 ~~~~~~r~~~kLe~Lr~e~kkkIEe 155 (170)
|.....+.++-|+.|+..|++...-
T Consensus 20 y~Kl~KKq~KEl~~lkKKh~Ke~~~ 44 (47)
T PF06631_consen 20 YVKLLKKQQKELEELKKKHQKERSS 44 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455678888888888888776543
No 90
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=33.59 E-value=2e+02 Score=21.41 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHhhc
Q 042191 136 RKDQKTLERLRA-ERQAKIDELKERT 160 (170)
Q Consensus 136 ~r~~~kLe~Lr~-e~kkkIEeLKe~T 160 (170)
++.++.-+++.. ++++++|+|.+++
T Consensus 69 k~Ye~a~~~~~~~~lqkRle~l~~eE 94 (104)
T PF11460_consen 69 KDYEEAVDQLTNEELQKRLEELSPEE 94 (104)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 344444444443 3588888877654
No 91
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=33.45 E-value=2.6e+02 Score=22.69 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 042191 127 FVSFTRICDRKDQKTLER 144 (170)
Q Consensus 127 l~~~~~~~~~r~~~kLe~ 144 (170)
+..+..-|.+..++.|++
T Consensus 73 i~~~L~~R~~~I~~~L~~ 90 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQ 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444344434433
No 92
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=33.37 E-value=31 Score=24.21 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=4.5
Q ss_pred cceeeee
Q 042191 26 RKGIISR 32 (170)
Q Consensus 26 ~~g~~s~ 32 (170)
|+|+|..
T Consensus 23 ~~GfFd~ 29 (92)
T PF13038_consen 23 QSGFFDG 29 (92)
T ss_pred hcCchHH
Confidence 5667665
No 93
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=33.34 E-value=1.7e+02 Score=26.34 Aligned_cols=43 Identities=30% Similarity=0.206 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 042191 113 MFLLPALSSLAY--SAFVSFTRICDRKDQKTLERLRAERQAKIDE 155 (170)
Q Consensus 113 ~~~~P~li~l~r--~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEe 155 (170)
++++|.+=.++- +++.|=-+-.+.+-+++|.++|.-|-++-+|
T Consensus 62 ~fgF~~~~s~~c~~cl~~wT~~~fi~~f~~~L~~lR~LRv~~n~~ 106 (353)
T PF03268_consen 62 MFGFMAMQSFVCAICLFGWTKNGFIPKFEKKLARLRTLRVEPNQE 106 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhCCcccc
Confidence 556665433322 2222222335667788888888888776665
No 94
>PHA02130 hypothetical protein
Probab=33.30 E-value=18 Score=25.14 Aligned_cols=20 Identities=40% Similarity=0.737 Sum_probs=15.8
Q ss_pred eehhhccCCCChHHHHHhhHHHHH
Q 042191 33 IWNGIFRLKRDDFEKRLQYISKEE 56 (170)
Q Consensus 33 iw~~~f~~~p~~FEK~L~~Isk~i 56 (170)
+|+ ++.+-.||+|+.+..+|
T Consensus 62 vwn----~~k~llekeles~aqei 81 (81)
T PHA02130 62 VWN----TDKDLLEKELESIAQEI 81 (81)
T ss_pred ehh----hhHHHHHHHHHHHhhcC
Confidence 476 78888999999887654
No 95
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=33.09 E-value=1.4e+02 Score=27.79 Aligned_cols=28 Identities=21% Similarity=0.631 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--Cchh
Q 042191 76 HLIIFSVIFEVIAVGYAIMTTRSV--DLDW 103 (170)
Q Consensus 76 ~l~lYs~~l~vl~v~Y~~~~~~~~--~~~w 103 (170)
++++|.+++.++.+++.|..-|.+ .+.|
T Consensus 3 RvlfflilV~alg~gfawLadrPG~lsl~w 32 (531)
T COG3898 3 RVLFFLILVAALGFGFAWLADRPGELSLIW 32 (531)
T ss_pred hHHHHHHHHHHHHhHHHHHcCCCcceeEEe
Confidence 466777777788899999887774 4445
No 96
>PRK08456 flagellar motor protein MotA; Validated
Probab=33.00 E-value=3e+02 Score=23.19 Aligned_cols=51 Identities=6% Similarity=0.100 Sum_probs=29.9
Q ss_pred cCCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 39 RLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYA 92 (170)
Q Consensus 39 ~~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~ 92 (170)
+.+|+++|..|+ .++...+.+...-......+....-.++++..|+.++=.
T Consensus 118 g~~~~~i~~~le---~ei~~~~~~~~~~~~~~~~~a~~AP~lGllGTVlGlI~~ 168 (257)
T PRK08456 118 GKDLEEIKESME---IQIEEMEEYYHGAAHYWITAGETCPTMGLVGAVMGLMLA 168 (257)
T ss_pred CCCHHHHHHHHH---HHHHHHHHHHHhHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356777775544 577776666665555555555555566666666554333
No 97
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=32.78 E-value=63 Score=23.39 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042191 110 VLPMFLLPALSSLAYSAFVSFTRICDR 136 (170)
Q Consensus 110 ~lp~~~~P~li~l~r~~l~~~~~~~~~ 136 (170)
.+|.+++|+|+|+-++.+.-+.-..++
T Consensus 2 CIPCivIPvLLwIykkFlqP~i~~~~s 28 (88)
T PF14975_consen 2 CIPCIVIPVLLWIYKKFLQPYIYPFWS 28 (88)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 368899999999888777755433443
No 98
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=32.50 E-value=2.2e+02 Score=21.42 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhccC-CCchhh
Q 042191 74 TRHLIIFSVIFEVIA-VGYAIMTTRS-VDLDWK 104 (170)
Q Consensus 74 ~~~l~lYs~~l~vl~-v~Y~~~~~~~-~~~~w~ 104 (170)
.+.-.+|++..-+.+ .+.+.++.+. ...+|.
T Consensus 40 fR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwa 72 (118)
T PF12597_consen 40 FRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWA 72 (118)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCccchhhh
Confidence 445667777664443 4444443322 345564
No 99
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=32.45 E-value=1.1e+02 Score=24.92 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhcCcHhHH
Q 042191 148 ERQAKIDELKERTNYYTTQ 166 (170)
Q Consensus 148 e~kkkIEeLKe~TnY~sT~ 166 (170)
+.|+|.|.-+++..+..|.
T Consensus 160 kkq~K~~R~~~r~~~~~t~ 178 (180)
T KOG3269|consen 160 KKQKKMDRQMSRGQVVKTR 178 (180)
T ss_pred hhHHHHHHHHHccccccCC
Confidence 3477777777777766664
No 100
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=32.39 E-value=4.1e+02 Score=24.54 Aligned_cols=8 Identities=0% Similarity=0.165 Sum_probs=3.1
Q ss_pred cCCCChHH
Q 042191 39 RLKRDDFE 46 (170)
Q Consensus 39 ~~~p~~FE 46 (170)
+.++..|+
T Consensus 98 ~~~~~~~~ 105 (555)
T TIGR01194 98 GAPIEEID 105 (555)
T ss_pred cCCHHHHH
Confidence 33343443
No 101
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.98 E-value=2.1e+02 Score=21.15 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=14.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042191 133 ICDRKDQKTLERLRAERQAKIDELKER 159 (170)
Q Consensus 133 ~~~~r~~~kLe~Lr~e~kkkIEeLKe~ 159 (170)
+.-.+.+...+++++++.=++...-|.
T Consensus 54 lmsQNRq~~~dr~ra~~D~~inl~ae~ 80 (108)
T PF06210_consen 54 LMSQNRQAARDRLRAELDYQINLKAEQ 80 (108)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHhHH
Confidence 333444455566666666555554443
No 102
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=31.35 E-value=63 Score=24.94 Aligned_cols=42 Identities=26% Similarity=0.204 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 042191 120 SSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTN 161 (170)
Q Consensus 120 i~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~Tn 161 (170)
+++.+.+-..+..|.+.+.++..+.|.+-+...++.+++.=+
T Consensus 28 ~~~~k~~g~~i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~ 69 (163)
T PF05405_consen 28 IFIYKKFGPSIAEWLDERIQKIEDELNQSRNDHIKALKERIE 69 (163)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555666666666666666666666666655443
No 103
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.05 E-value=3.1e+02 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=16.0
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 43 DDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRH 76 (170)
Q Consensus 43 ~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~ 76 (170)
++.| .+-.|+.++.+++..++..+.+.+.+..+
T Consensus 159 ~~~~-d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 159 KTVE-DLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 34445555555555555555544444333
No 104
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.04 E-value=2.1e+02 Score=20.87 Aligned_cols=9 Identities=56% Similarity=0.697 Sum_probs=4.8
Q ss_pred HHHHHHHHh
Q 042191 150 QAKIDELKE 158 (170)
Q Consensus 150 kkkIEeLKe 158 (170)
+..|+.|+.
T Consensus 54 ~~eI~~L~~ 62 (105)
T PRK00888 54 FAEIDDLKG 62 (105)
T ss_pred HHHHHHhhC
Confidence 445555554
No 105
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.03 E-value=2.3e+02 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=12.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Q 042191 132 RICDRKDQKTLERLRAERQAKIDEL 156 (170)
Q Consensus 132 ~~~~~r~~~kLe~Lr~e~kkkIEeL 156 (170)
.-|+.+-..+|++..+-.+.+-+|+
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455555556655555444444443
No 106
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=30.87 E-value=84 Score=23.63 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=12.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHh
Q 042191 134 CDRKDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 134 ~~~r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
.++.++++ +++|++-++.||.
T Consensus 19 ~iRPQkKr----~Ke~~em~~sLk~ 39 (113)
T PRK06531 19 MQRQQKKQ----AQERQNQLNAIQK 39 (113)
T ss_pred eechHHHH----HHHHHHHHHhcCC
Confidence 35555443 5566777777765
No 107
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=30.65 E-value=4.4e+02 Score=24.37 Aligned_cols=8 Identities=13% Similarity=0.513 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 042191 114 FLLPALSS 121 (170)
Q Consensus 114 ~~~P~li~ 121 (170)
++.|++.+
T Consensus 145 ~~~~l~~~ 152 (569)
T PRK10789 145 LPMPVMAI 152 (569)
T ss_pred HHHHHHHH
Confidence 33444433
No 108
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.51 E-value=98 Score=25.81 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 042191 70 WRRLTRHLIIFSVIF 84 (170)
Q Consensus 70 ~rr~~~~l~lYs~~l 84 (170)
......+++++|+..
T Consensus 168 v~st~~Rv~~~Sl~e 182 (209)
T KOG1693|consen 168 VESTNSRVTWWSLLE 182 (209)
T ss_pred hhcccchhhHHHHHH
Confidence 333444555555443
No 109
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=30.46 E-value=2.5e+02 Score=21.54 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=24.3
Q ss_pred CCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 41 KRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIM 94 (170)
Q Consensus 41 ~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~~~ 94 (170)
+|++.| .|..-+...+++.+.++-. .-||+.-+.++++... +-+|.|+
T Consensus 2 ~~t~ce-DLkaFErRLtEvI~~l~Ps---t~RWRiiL~v~svct~--v~A~~wL 49 (125)
T PF09771_consen 2 EPTACE-DLKAFERRLTEVINSLQPS---TTRWRIILVVVSVCTA--VGAWHWL 49 (125)
T ss_pred CchhHH-HHHHHHHHHHHHHHhcCCc---chhHHHHHHHHHHHHH--HHHHHHh
Confidence 455565 5555555555555555444 3455444554444433 3345555
No 110
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.34 E-value=1.4e+02 Score=19.03 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=16.9
Q ss_pred CCChHHHHHhhHHHHHHHHHHH
Q 042191 41 KRDDFEKRLQYISKEEAAVLAR 62 (170)
Q Consensus 41 ~p~~FEK~L~~Isk~i~~~~~~ 62 (170)
.-|..|...+.|+.+|++++++
T Consensus 13 ~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 13 HYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp --THHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhHHHHHHHHHHHHHH
Confidence 3478898999999999997655
No 111
>PRK12705 hypothetical protein; Provisional
Probab=30.17 E-value=2.1e+02 Score=26.95 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042191 114 FLLPALSSLAYSAFVSFT 131 (170)
Q Consensus 114 ~~~P~li~l~r~~l~~~~ 131 (170)
+++|++..++..++.++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (508)
T PRK12705 9 ILLLLIGLLLGVLVVLLK 26 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 112
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.14 E-value=1.2e+02 Score=19.99 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=16.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHH
Q 042191 44 DFEKRLQYISKEEAAVLARMKRRSQ 68 (170)
Q Consensus 44 ~FEK~L~~Isk~i~~~~~~l~~~~~ 68 (170)
||+++...|++++..++..+.+.+.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777787777776666655543
No 113
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.85 E-value=2e+02 Score=21.64 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHH
Q 042191 136 RKDQKTLERLRAER 149 (170)
Q Consensus 136 ~r~~~kLe~Lr~e~ 149 (170)
+..++.|++.+.+.
T Consensus 28 ~~l~~eL~~~k~el 41 (128)
T PF06295_consen 28 AKLEQELEQAKQEL 41 (128)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 114
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=29.40 E-value=1.8e+02 Score=19.41 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042191 63 MKRRSQTWRRLTRHLIIFSVIFE 85 (170)
Q Consensus 63 l~~~~~~~rr~~~~l~lYs~~l~ 85 (170)
..++|++.++. ++++|++++.
T Consensus 28 ~~k~qk~~~~~--~~i~~~~~i~ 48 (59)
T PF09889_consen 28 YRKRQKRMRKT--QYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHH--HHHHHHHHHH
Confidence 34444444433 4555555544
No 115
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=28.73 E-value=3e+02 Score=21.83 Aligned_cols=24 Identities=13% Similarity=0.343 Sum_probs=15.1
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHH
Q 042191 43 DDFEKRLQYISKEEAAVLARMKRR 66 (170)
Q Consensus 43 ~~FEK~L~~Isk~i~~~~~~l~~~ 66 (170)
+.-+++|+.++++.+.......++
T Consensus 67 ~~~~~el~~le~~k~~id~~A~~~ 90 (180)
T PF04678_consen 67 EELRQELAPLEKIKQEIDEKAEKR 90 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888877766644444433
No 116
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=28.46 E-value=91 Score=19.94 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 042191 111 LPMFLLPALSSLAYSAFVSFTR 132 (170)
Q Consensus 111 lp~~~~P~li~l~r~~l~~~~~ 132 (170)
+..+++|++..++--.+..+++
T Consensus 20 LDyvL~PaLa~fi~lt~yal~r 41 (46)
T PF11431_consen 20 LDYVLLPALAVFIGLTIYALWR 41 (46)
T ss_dssp TTTSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888877766665553
No 117
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.35 E-value=2.1e+02 Score=19.97 Aligned_cols=8 Identities=38% Similarity=0.517 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 042191 142 LERLRAER 149 (170)
Q Consensus 142 Le~Lr~e~ 149 (170)
+++++.++
T Consensus 44 l~~l~~~~ 51 (97)
T PF04999_consen 44 LQQLEKEI 51 (97)
T ss_pred HHHHHHHH
Confidence 44444433
No 118
>COG3686 Predicted membrane protein [Function unknown]
Probab=28.32 E-value=2.8e+02 Score=21.34 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=18.0
Q ss_pred cccceeeeeeehhhccCCCChHHHHHhhHHHH
Q 042191 24 KKRKGIISRIWNGIFRLKRDDFEKRLQYISKE 55 (170)
Q Consensus 24 ~~~~g~~s~iw~~~f~~~p~~FEK~L~~Isk~ 55 (170)
|.++| .| || .+|-||+-.|+.+...
T Consensus 23 ~~~~g--~~-~N----a~PRd~~~kl~G~a~R 47 (125)
T COG3686 23 KFEGG--RR-WN----AGPRDFLAKLQGLAGR 47 (125)
T ss_pred HhhcC--Cc-CC----CCchhhhccCccHHHH
Confidence 34555 66 98 6799999888886543
No 119
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=28.30 E-value=2.2e+02 Score=20.26 Aligned_cols=14 Identities=43% Similarity=0.506 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhh
Q 042191 146 RAERQAKIDELKER 159 (170)
Q Consensus 146 r~e~kkkIEeLKe~ 159 (170)
|++--++++++|++
T Consensus 74 R~el~~~i~~~k~~ 87 (90)
T PF14159_consen 74 RQELLQKIQSLKKE 87 (90)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666676653
No 120
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=28.23 E-value=1.6e+02 Score=22.44 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhhHhhhhhhhHHHHHHHHHHHHHHH
Q 042191 79 IFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPALSSLAYSAF 127 (170)
Q Consensus 79 lYs~~l~vl~v~Y~~~~~~~~~~~w~~r~~~~lp~~~~P~li~l~r~~l 127 (170)
.|..+.+++..+-.|+.+++ |. .++++|+++.+.+..+
T Consensus 78 ~~i~~Aevi~~~v~y~~TkN----~~-------~~~Gf~i~iIft~Vg~ 115 (119)
T PF05513_consen 78 KWIYLAEVIVGVVMYFKTKN----PM-------VFGGFAIVIIFTNVGF 115 (119)
T ss_pred HHHHHHHHHHHHHHHHhccC----hH-------HhhhhHHhHhHHHhhh
Confidence 33444566665556665552 22 3556777777766544
No 121
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=28.05 E-value=4.4e+02 Score=24.02 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042191 68 QTWRRLTRHLIIFSVIFEVIA 88 (170)
Q Consensus 68 ~~~rr~~~~l~lYs~~l~vl~ 88 (170)
...||..+.+++|++++..++
T Consensus 231 ~~~Rr~~H~l~~yGFil~f~a 251 (389)
T PRK15033 231 TLARRRFHHLTFYGFMLCFAA 251 (389)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999887654
No 122
>PRK09109 motC flagellar motor protein; Reviewed
Probab=28.04 E-value=3.6e+02 Score=22.58 Aligned_cols=50 Identities=8% Similarity=0.029 Sum_probs=33.1
Q ss_pred cCCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 39 RLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGY 91 (170)
Q Consensus 39 ~~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y 91 (170)
+.+|+++|.. ++.+++..+.++++.......+....-.++++..|+.++-
T Consensus 118 g~~~~~i~~~---le~~i~~~~~r~~~~~~~l~~~a~~AP~lGllGTVlGlI~ 167 (246)
T PRK09109 118 GAEPESIRSV---LEVEIDTQEHRDLQAAKVFESMGGYAPTIGIIGAVMGLIH 167 (246)
T ss_pred CCCHHHHHHH---HHHHHHHHHHHHHhHhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4577777755 4447777666777777777777666677777766665433
No 123
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=27.99 E-value=2.6e+02 Score=20.99 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=7.9
Q ss_pred ehhhc---cCC-CChHHHH
Q 042191 34 WNGIF---RLK-RDDFEKR 48 (170)
Q Consensus 34 w~~~f---~~~-p~~FEK~ 48 (170)
|+-+| ++. |.++++.
T Consensus 11 w~eF~~~~~fs~P~~~~~~ 29 (153)
T PF03208_consen 11 WREFFDTSRFSVPSSFSEA 29 (153)
T ss_pred HHHHhCccCCCCCCCHHHH
Confidence 55555 222 6677644
No 124
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=27.69 E-value=76 Score=26.50 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042191 76 HLIIFSVIFEVIAVGYAIMT 95 (170)
Q Consensus 76 ~l~lYs~~l~vl~v~Y~~~~ 95 (170)
++++-.++++|++|+|.++.
T Consensus 17 NiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHHhhhhee
Confidence 33333444555666676653
No 125
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.59 E-value=2.4e+02 Score=20.30 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 042191 142 LERLRAERQ 150 (170)
Q Consensus 142 Le~Lr~e~k 150 (170)
-+.|+.|.+
T Consensus 39 n~qlk~Ek~ 47 (87)
T PF10883_consen 39 NEQLKTEKA 47 (87)
T ss_pred HHHHHHHHH
Confidence 334444443
No 126
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=27.58 E-value=2.7e+02 Score=20.97 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 042191 141 TLERLRAERQAKIDELKE 158 (170)
Q Consensus 141 kLe~Lr~e~kkkIEeLKe 158 (170)
+|++.+++.++.+++-++
T Consensus 64 ~l~~a~~ea~~i~~~a~~ 81 (156)
T PRK05759 64 QLAEARAEAAEIIEQAKK 81 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 127
>PF05969 PSII_Ycf12: Photosystem II complex subunit Ycf12; InterPro: IPR010284 This family represents Ycf12, a core subunit of photosystem II; its function is unknown []. ; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3BZ2_y 3PRR_y 3PRQ_y 4FBY_m 3KZI_y 3BZ1_y 3A0B_y 3A0H_y 3ARC_Y.
Probab=27.36 E-value=66 Score=19.15 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHH
Q 042191 111 LPMFLLPALSSLAY 124 (170)
Q Consensus 111 lp~~~~P~li~l~r 124 (170)
+.++.+|++|.++.
T Consensus 14 liv~aGP~VI~lLa 27 (33)
T PF05969_consen 14 LIVLAGPLVIFLLA 27 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHcccHHhhHHH
Confidence 34566999988764
No 128
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.31 E-value=2e+02 Score=19.37 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 042191 150 QAKIDELKE 158 (170)
Q Consensus 150 kkkIEeLKe 158 (170)
+...++|+.
T Consensus 44 ~~en~~L~~ 52 (85)
T TIGR02209 44 QKEWRDLQL 52 (85)
T ss_pred HHHHHHHHH
Confidence 333444443
No 129
>PF14770 TMEM18: Transmembrane protein 18
Probab=26.58 E-value=2.6e+02 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 042191 111 LPMFLLPALSSLAYSAFVSFTRIC 134 (170)
Q Consensus 111 lp~~~~P~li~l~r~~l~~~~~~~ 134 (170)
..++.+|+++..+.-++.++++..
T Consensus 83 svv~s~PlLl~~~ii~~~~l~~~~ 106 (123)
T PF14770_consen 83 SVVFSAPLLLNCLIILVNWLYQLC 106 (123)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345557888776666666665443
No 130
>PHA02690 hypothetical protein; Provisional
Probab=26.35 E-value=2.5e+02 Score=20.14 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 62 RMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIM 94 (170)
Q Consensus 62 ~l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~~~ 94 (170)
.+..++-..|+..+. +|-+.+.++++.|..+
T Consensus 30 hlEgs~plLR~~~Rl--LfDL~lTvfV~myiv~ 60 (90)
T PHA02690 30 HLEGSTPLLRQMWRL--LFDLLLTVFVVMYIVF 60 (90)
T ss_pred HHhcCCHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 344444445555443 4566666666666544
No 131
>PF04631 Baculo_44: Baculovirus hypothetical protein; InterPro: IPR006725 This family includes several hypothetical baculoviral proteins, with predicted molecular weights of approximately 44 kDa.
Probab=26.23 E-value=1.9e+02 Score=26.20 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Q 042191 118 ALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNY 162 (170)
Q Consensus 118 ~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~TnY 162 (170)
+++++++.-+..-| ..|...+......-+++-+.++++....+|
T Consensus 8 i~l~~~y~Ply~a~-~~I~~~q~~y~~~l~dri~~~~~~l~rrry 51 (371)
T PF04631_consen 8 IFLYLLYIPLYYAY-VNIKSEQEEYNNTLDDRIDYIQEVLQRRRY 51 (371)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhcCC
Confidence 34555555554444 445566666666777777888888887766
No 132
>COG4327 Predicted membrane protein [Function unknown]
Probab=26.17 E-value=2.6e+02 Score=20.66 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhhHHH
Q 042191 125 SAFVSFTRICDRKDQKT 141 (170)
Q Consensus 125 ~~l~~~~~~~~~r~~~k 141 (170)
-++...|-|+.++..++
T Consensus 66 Vvlifvya~r~nkld~k 82 (101)
T COG4327 66 VVLIFVYAWRMNKLDDK 82 (101)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 45566677777665543
No 133
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=26.07 E-value=3.1e+02 Score=21.58 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhcCcH
Q 042191 149 RQAKIDELKERTNYY 163 (170)
Q Consensus 149 ~kkkIEeLKe~TnY~ 163 (170)
.++.+.+|-++.+++
T Consensus 52 ~~~e~~~l~k~~~~~ 66 (181)
T TIGR03592 52 LQQEMMKLYKEEGVN 66 (181)
T ss_pred HHHHHHHHHHHhCCC
Confidence 344444555555543
No 134
>PF13974 YebO: YebO-like protein
Probab=25.78 E-value=2.5e+02 Score=19.95 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 042191 137 KDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 137 r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
-+-.=|+.+-.|++...+=|+.
T Consensus 27 EQI~LL~~ileqQKrQn~LL~r 48 (80)
T PF13974_consen 27 EQIELLEEILEQQKRQNALLRR 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566666666666665554
No 135
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=25.71 E-value=2.6e+02 Score=20.13 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 042191 135 DRKDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 135 ~~r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
.++.....++-+++-++-++-+|+
T Consensus 97 l~~~~~~~~~t~~~l~~d~~~lk~ 120 (121)
T PF07332_consen 97 LRRAPPPFEETIAELKEDIAALKE 120 (121)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhhc
Confidence 333455666777777777776665
No 136
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=25.54 E-value=3.7e+02 Score=21.81 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 042191 142 LERLRAERQAKIDELK 157 (170)
Q Consensus 142 Le~Lr~e~kkkIEeLK 157 (170)
+.....+.++=++.+|
T Consensus 111 ~~~~~~Ke~eF~~rIk 126 (173)
T PF08566_consen 111 LKQMDAKEKEFLARIK 126 (173)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344444443
No 137
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=25.38 E-value=2.6e+02 Score=21.89 Aligned_cols=37 Identities=35% Similarity=0.371 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 042191 125 SAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTN 161 (170)
Q Consensus 125 ~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~Tn 161 (170)
++-.+|-.+....+-+-||++-.++.+.++++++..+
T Consensus 27 kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~ 63 (151)
T PF14584_consen 27 KLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELE 63 (151)
T ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4444454454555556788888888888888777654
No 138
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=25.32 E-value=2.4e+02 Score=22.13 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=30.8
Q ss_pred cCCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 39 RLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHL 77 (170)
Q Consensus 39 ~~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l 77 (170)
+.++.+.|..|.....++.++....+..+.+.+.....+
T Consensus 38 g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 38 GKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999998888888877777766665443
No 139
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.24 E-value=3.6e+02 Score=23.09 Aligned_cols=7 Identities=0% Similarity=-0.273 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 042191 115 LLPALSS 121 (170)
Q Consensus 115 ~~P~li~ 121 (170)
..|+..+
T Consensus 44 ~~p~~~~ 50 (283)
T TIGR00219 44 VTLNYYI 50 (283)
T ss_pred eEHHHHH
Confidence 3465444
No 140
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.44 E-value=1.8e+02 Score=25.50 Aligned_cols=15 Identities=13% Similarity=-0.117 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHH
Q 042191 110 VLPMFLLPALSSLAY 124 (170)
Q Consensus 110 ~lp~~~~P~li~l~r 124 (170)
++++++||+.+..+-
T Consensus 18 algLvGGp~Gl~ml~ 32 (301)
T PF06120_consen 18 ALGLVGGPPGLVMLG 32 (301)
T ss_pred HHHhhcchHHHHHHH
Confidence 456777777665443
No 141
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=24.01 E-value=6.3e+02 Score=24.05 Aligned_cols=49 Identities=14% Similarity=-0.052 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCcH
Q 042191 114 FLLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERTNYY 163 (170)
Q Consensus 114 ~~~P~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~TnY~ 163 (170)
+.+|+.+++.+.....+ .....+.++...+++..+.+-++-..+.-.|+
T Consensus 247 ~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~ 295 (659)
T TIGR00954 247 AYLFATGVVLTKLRPPI-GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQ 295 (659)
T ss_pred HHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 34566655555433333 34445666677777777777766555554443
No 142
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=23.95 E-value=4.5e+02 Score=23.71 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHH
Q 042191 54 KEEAAVLARMKRRSQTWRRLTRHLIIFSVI---FEVIA-VGYAI 93 (170)
Q Consensus 54 k~i~~~~~~l~~~~~~~rr~~~~l~lYs~~---l~vl~-v~Y~~ 93 (170)
.+.++++..++++-+.+-+.+...--.|+. -||+. ++|.-
T Consensus 338 rQN~~lL~~Md~ra~lQlrLQqtVEGLSvaAvsYYVvGLiGYl~ 381 (424)
T COG4949 338 RQNQELLNSMDARAQLQLRLQQTVEGLSVAAVSYYVVGLIGYLA 381 (424)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHhccceehhhhHHHHHHHHHHH
Confidence 344556666777766666666554333332 24443 56644
No 143
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=23.93 E-value=1.6e+02 Score=26.32 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=28.4
Q ss_pred ccCCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 38 FRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRH 76 (170)
Q Consensus 38 f~~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~ 76 (170)
|+-||.+|+-.|++....+.+.+..++..++.....+..
T Consensus 82 ~~iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~ 120 (352)
T COG1566 82 FRIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQAL 120 (352)
T ss_pred EEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999998888777666666666555544433
No 144
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=23.37 E-value=1.4e+02 Score=23.96 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=28.0
Q ss_pred cCCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 39 RLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLT 74 (170)
Q Consensus 39 ~~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~ 74 (170)
..||+-|++-+.....+.+.......+|+..|+++-
T Consensus 125 emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le 160 (170)
T PLN00122 125 EMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLE 160 (170)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999888887777776666777877777763
No 145
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=23.28 E-value=1.2e+02 Score=22.39 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 042191 107 ALRVLPMFLLPALSSLAYSAF 127 (170)
Q Consensus 107 ~~~~lp~~~~P~li~l~r~~l 127 (170)
...+++.+++.+++.++|.++
T Consensus 76 ilGlvgTi~gsliia~lr~~f 96 (98)
T PF11166_consen 76 ILGLVGTIFGSLIIALLRTIF 96 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334445556666777777654
No 146
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.17 E-value=1.4e+02 Score=24.97 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 042191 138 DQKTLERLRAERQAKI 153 (170)
Q Consensus 138 ~~~kLe~Lr~e~kkkI 153 (170)
+-.++++|+-+-..-+
T Consensus 124 nId~IedlQDem~Dlm 139 (218)
T KOG1655|consen 124 NIDKIEDLQDEMEDLM 139 (218)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4446666666544433
No 147
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.13 E-value=98 Score=19.60 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 042191 78 IIFSVIFEVIAVGYAIMTTRS 98 (170)
Q Consensus 78 ~lYs~~l~vl~v~Y~~~~~~~ 98 (170)
++|.+++.+.+++|++++.+.
T Consensus 16 l~~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 344556667778899886554
No 148
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=23.01 E-value=4.7e+02 Score=22.20 Aligned_cols=102 Identities=11% Similarity=0.154 Sum_probs=53.6
Q ss_pred CCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHhhhhhhhHHHHHHH
Q 042191 40 LKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLIIFSVIFEVIAVGYAIMTTRSVDLDWKMRALRVLPMFLLPAL 119 (170)
Q Consensus 40 ~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~lYs~~l~vl~v~Y~~~~~~~~~~~w~~r~~~~lp~~~~P~l 119 (170)
.+|++++ +.++.++.....++++.......+....-.++++..|+.++-.+. ...+ |-.++|-+
T Consensus 116 ~~~e~i~---~~le~~~~~~~~~~~~~~~~l~~~a~~AP~lGllGTVlGLI~~~~--~l~~-----------p~~lg~gI 179 (254)
T PRK06743 116 YDEDELK---EVLMKDVETEVYELRKGAALLDKIGDFAPAWGMIGTLIGLIIMLQ--NLQD-----------TSQIGTGM 179 (254)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--ccCC-----------HHHHHHHH
Confidence 4555555 334566666666676666666666666666666666655443322 1011 22233332
Q ss_pred H----HHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 042191 120 S----SLAY--SAFVSFTRICDRKDQKTLERLRAERQAKIDELK 157 (170)
Q Consensus 120 i----~l~r--~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLK 157 (170)
. ..++ .+-+.+|.-.-++.+.+.++.-.+++-.+|-+-
T Consensus 180 a~ALvtT~yGl~~An~~~~Pia~kL~~~~~~e~~~~~~iiegi~ 223 (254)
T PRK06743 180 AVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFVIEAIS 223 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222 222345566666777777777767666666543
No 149
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=23.00 E-value=6e+02 Score=23.42 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 042191 117 PALSSLAYSAFVSF 130 (170)
Q Consensus 117 P~li~l~r~~l~~~ 130 (170)
+++..++|.++.-+
T Consensus 37 i~ltiiVRliLlPL 50 (429)
T PRK00247 37 FGLVITVRAIIAPF 50 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445444433
No 150
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=22.86 E-value=6.8e+02 Score=23.97 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.5
Q ss_pred HHHHHH
Q 042191 114 FLLPAL 119 (170)
Q Consensus 114 ~~~P~l 119 (170)
++.|+.
T Consensus 309 ~~~~l~ 314 (711)
T TIGR00958 309 INLPLV 314 (711)
T ss_pred HHHHHH
Confidence 334443
No 151
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.77 E-value=2.3e+02 Score=20.81 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=17.5
Q ss_pred HHHHHHhhhhHHHHHHH----HHHHHHHHHHHHhh
Q 042191 129 SFTRICDRKDQKTLERL----RAERQAKIDELKER 159 (170)
Q Consensus 129 ~~~~~~~~r~~~kLe~L----r~e~kkkIEeLKe~ 159 (170)
.||.-...-+-++|++- .+.|++.||+|.+.
T Consensus 64 ~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 64 QYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444443333444444 34489999988764
No 152
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.76 E-value=2.7e+02 Score=20.33 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 042191 142 LERLRAE 148 (170)
Q Consensus 142 Le~Lr~e 148 (170)
+++|+++
T Consensus 43 ~~~l~~~ 49 (105)
T PRK00888 43 NAKLKAR 49 (105)
T ss_pred HHHHHHH
Confidence 3333333
No 153
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=22.29 E-value=1.2e+02 Score=25.91 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042191 110 VLPMFLLPALSSLAYSAFVSFTRICDRKD 138 (170)
Q Consensus 110 ~lp~~~~P~li~l~r~~l~~~~~~~~~r~ 138 (170)
++|+++.-++|.++..++..+|++|..++
T Consensus 190 ilpvvIaliVitl~vf~LvgLyr~C~k~d 218 (259)
T PF07010_consen 190 ILPVVIALIVITLSVFTLVGLYRMCWKTD 218 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 35666655555555566667777776543
No 154
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=22.28 E-value=1.5e+02 Score=28.85 Aligned_cols=30 Identities=10% Similarity=0.183 Sum_probs=24.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Q 042191 133 ICDRKDQKTLERLRAERQAKIDELKERTNY 162 (170)
Q Consensus 133 ~~~~r~~~kLe~Lr~e~kkkIEeLKe~TnY 162 (170)
..+...+...|++|++|.++++++|+-+-+
T Consensus 371 ~~ia~~~AEIekmK~~Hak~m~k~k~~s~l 400 (669)
T PF08549_consen 371 KKIADMNAEIEKMKARHAKRMAKFKRNSLL 400 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 455677789999999999999999986543
No 155
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.15 E-value=2.3e+02 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=13.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHh
Q 042191 134 CDRKDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 134 ~~~r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
+..-++..++++..+...+.++|++
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRq 68 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQ 68 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 156
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=22.12 E-value=2e+02 Score=23.75 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 042191 115 LLPALSSLAYSAFVSFTRICDRKDQKTLERLRAERQA 151 (170)
Q Consensus 115 ~~P~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kk 151 (170)
+..+++|-+|.....+.+........|-+++|.+..+
T Consensus 44 ~~lv~~W~~RL~~~l~~R~~~~~eD~R~~~~r~~~~~ 80 (235)
T PF06966_consen 44 AALVIVWGLRLGYFLFRRNLGWGEDWRYDDLRKKWGE 80 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHhcCc
Confidence 3456788888877777665555567788888887643
No 157
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=21.95 E-value=1.2e+02 Score=26.80 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042191 111 LPMFLLPALSSLAY---SAFVSFTRI-CDRKDQKTLERLRAERQAKIDELKER 159 (170)
Q Consensus 111 lp~~~~P~li~l~r---~~l~~~~~~-~~~r~~~kLe~Lr~e~kkkIEeLKe~ 159 (170)
..+++.|+.++++- -++.-++.. ++++..+. .. .+..|+|+++-+
T Consensus 180 ~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~-~~---~~~~Kl~klm~R 228 (328)
T PF01534_consen 180 RGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKH-DG---TKTSKLEKLMIR 228 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcc-cc---cchhhHHHHHHH
Confidence 36677888887543 222223322 23222221 11 566777777643
No 158
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=21.74 E-value=4.3e+02 Score=21.27 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=15.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 042191 107 ALRVLPMFLLPALSSLAYSAFVSFT 131 (170)
Q Consensus 107 ~~~~lp~~~~P~li~l~r~~l~~~~ 131 (170)
..+..|+++.|+++...+.+..+..
T Consensus 125 ~~r~~~~lllpl~~l~~~ai~~RI~ 149 (217)
T PF13687_consen 125 FLRIFPLLLLPLLVLAFYAIWLRIS 149 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777877655554444443
No 159
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=5.8e+02 Score=24.45 Aligned_cols=31 Identities=26% Similarity=0.210 Sum_probs=13.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHH
Q 042191 116 LPALSSLAY----SAFVSFTRICDRKDQKTLERLR 146 (170)
Q Consensus 116 ~P~li~l~r----~~l~~~~~~~~~r~~~kLe~Lr 146 (170)
+|+.++++- ......|....+=...-|+.||
T Consensus 153 IPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~Lr 187 (559)
T COG4988 153 IPLFMILVGLAAKDASEKQFSALARLSGHFLDRLR 187 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 466555543 2233344333333334444443
No 160
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.54 E-value=4.2e+02 Score=21.88 Aligned_cols=6 Identities=50% Similarity=0.573 Sum_probs=2.4
Q ss_pred HHHHHH
Q 042191 116 LPALSS 121 (170)
Q Consensus 116 ~P~li~ 121 (170)
+|++.+
T Consensus 244 ~p~~~~ 249 (262)
T PF14257_consen 244 LPWLPL 249 (262)
T ss_pred HHHHHH
Confidence 344433
No 161
>PRK09848 glucuronide transporter; Provisional
Probab=21.07 E-value=1.2e+02 Score=26.43 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042191 114 FLLPALSSLAYSAFVSFT 131 (170)
Q Consensus 114 ~~~P~li~l~r~~l~~~~ 131 (170)
.+.|++..++-.++.++|
T Consensus 410 ~~~p~~~~~~~~~~~~~y 427 (448)
T PRK09848 410 ALVPCGFMLLAFVIIWFY 427 (448)
T ss_pred HHHHHHHHHHHHHHHHHe
Confidence 345666665555544444
No 162
>PHA02047 phage lambda Rz1-like protein
Probab=21.04 E-value=3.5e+02 Score=20.00 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=25.7
Q ss_pred HHHHhhhhHHHHHHHHHHH---HHHHHHHHhhcCcHhHHhh
Q 042191 131 TRICDRKDQKTLERLRAER---QAKIDELKERTNYYTTQQL 168 (170)
Q Consensus 131 ~~~~~~r~~~kLe~Lr~e~---kkkIEeLKe~TnY~sT~~L 168 (170)
++...++...+||.++.++ |+-.++|..+++ -.|+++
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae-~~t~Ei 71 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEARTN-TQRQEV 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4567788888899888877 556666666655 355554
No 163
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=21.03 E-value=4.6e+02 Score=21.33 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=9.9
Q ss_pred cCCCChHHHHHhhH
Q 042191 39 RLKRDDFEKRLQYI 52 (170)
Q Consensus 39 ~~~p~~FEK~L~~I 52 (170)
++|+.||+|.=..+
T Consensus 34 ~Pd~~D~~kW~nRV 47 (188)
T KOG4050|consen 34 RPDFNDFKKWNNRV 47 (188)
T ss_pred CCCCccHHHHHHHH
Confidence 67788998875443
No 164
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.01 E-value=3.1e+02 Score=22.47 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=11.1
Q ss_pred hhcccceeee-eeehhhccC----CCChHH
Q 042191 22 VGKKRKGIIS-RIWNGIFRL----KRDDFE 46 (170)
Q Consensus 22 ~~~~~~g~~s-~iw~~~f~~----~p~~FE 46 (170)
....+.|+-+ |=|+-+|-. .|.+|-
T Consensus 27 ~~~~~~~lst~RpW~ef~d~~~fs~P~s~s 56 (187)
T KOG3142|consen 27 KQTIQSGLSTRRPWSEFFDRSAFSRPRSLS 56 (187)
T ss_pred HHHHHHHHhccCCHHHHHcccccCCCccHH
Confidence 3334444432 346555421 166665
No 165
>PF14163 SieB: Superinfection exclusion protein B
Probab=20.94 E-value=3.8e+02 Score=20.31 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 042191 119 LSSLAYSAFVSFTRI 133 (170)
Q Consensus 119 li~l~r~~l~~~~~~ 133 (170)
+++++..++.+.++.
T Consensus 44 ~s~li~~~~~~~~~~ 58 (151)
T PF14163_consen 44 VSYLIAQLLSFIYKE 58 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555444
No 166
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=20.36 E-value=1.5e+02 Score=19.82 Aligned_cols=7 Identities=29% Similarity=0.947 Sum_probs=4.9
Q ss_pred CCchhhH
Q 042191 99 VDLDWKM 105 (170)
Q Consensus 99 ~~~~w~~ 105 (170)
|...|.+
T Consensus 28 N~vgWKl 34 (60)
T PF13209_consen 28 NTVGWKL 34 (60)
T ss_pred cccchhh
Confidence 6778874
No 167
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=20.24 E-value=2.1e+02 Score=22.42 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 042191 139 QKTLERLRAERQAK 152 (170)
Q Consensus 139 ~~kLe~Lr~e~kkk 152 (170)
+..|++|+++..++
T Consensus 130 ~~eL~qLq~rL~qT 143 (152)
T PF15361_consen 130 DYELAQLQERLAQT 143 (152)
T ss_pred HHHHHHHHHHHHHH
Confidence 34677777665544
No 168
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.17 E-value=4.6e+02 Score=21.88 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 042191 112 PMFLLPALSSLAYSAFVSFTRICDRKDQKTLERLRA 147 (170)
Q Consensus 112 p~~~~P~li~l~r~~l~~~~~~~~~r~~~kLe~Lr~ 147 (170)
|=+++++++.++.-++.++|-+.. ....|+.+++
T Consensus 23 ~rlv~~lL~~~~V~~lGy~f~~s~--k~eel~~~~~ 56 (211)
T COG3167 23 PRLVFCLLAVAAVLGLGYAFYLSG--KLEELEELEA 56 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHH
Confidence 455666666666666676664332 3334444443
No 169
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.11 E-value=1.9e+02 Score=20.31 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 042191 146 RAERQAKIDELKE 158 (170)
Q Consensus 146 r~e~kkkIEeLKe 158 (170)
+++|++-+++|+.
T Consensus 28 ~k~~~~m~~~L~~ 40 (84)
T TIGR00739 28 RKAHKKLIESLKK 40 (84)
T ss_pred HHHHHHHHHhCCC
Confidence 4555666666654
Done!