Query 042191
Match_columns 170
No_of_seqs 122 out of 157
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:54:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3teq_A Stromal interaction mol 61.2 3 0.0001 29.9 1.3 53 20-73 38-90 (101)
2 4hkr_A Calcium release-activat 44.2 1.2E+02 0.0042 24.2 12.1 16 113-128 152-167 (214)
3 2cly_A ATP synthase B chain, m 32.7 37 0.0013 27.1 3.6 42 119-160 67-108 (214)
4 1gmj_A ATPase inhibitor; coile 32.3 62 0.0021 22.2 4.2 25 135-159 35-66 (84)
5 3ter_A Mammalian stromal inter 31.5 44 0.0015 25.0 3.6 52 21-73 70-123 (136)
6 2pnv_A Small conductance calci 31.0 46 0.0016 20.0 3.0 22 42-63 18-39 (43)
7 3arc_Y Protein YCF12; PSII, me 30.4 36 0.0012 18.9 2.2 14 111-124 10-23 (29)
8 1oeg_A Apolipoprotein E; siali 30.3 21 0.00073 19.3 1.2 20 142-161 3-22 (26)
9 1txp_A HnRNP C, heterogeneous 30.3 63 0.0021 17.7 3.1 21 45-65 4-24 (28)
10 2ksd_A Aerobic respiration con 30.2 14 0.00047 27.0 0.6 59 99-158 48-110 (115)
11 2v7q_J ATPase inhibitor; ION t 27.3 65 0.0022 21.2 3.4 13 146-158 35-47 (66)
12 2lhr_A Iron-regulated surface 25.5 69 0.0024 21.4 3.3 25 135-159 32-57 (78)
13 3b60_A Lipid A export ATP-bind 24.9 3.5E+02 0.012 23.7 14.3 11 36-46 107-117 (582)
14 2kv5_A FST, putative uncharact 24.7 87 0.003 17.8 3.2 19 112-130 6-24 (33)
15 3lay_A Zinc resistance-associa 23.4 56 0.0019 25.2 3.0 23 135-157 69-91 (175)
16 3b5x_A Lipid A export ATP-bind 23.1 3.8E+02 0.013 23.5 12.4 6 115-120 174-179 (582)
17 1g6u_A Domain swapped dimer; d 22.4 1E+02 0.0034 18.4 3.3 15 46-60 26-40 (48)
18 1ic2_A Tropomyosin alpha chain 21.9 1.8E+02 0.006 19.1 5.0 33 43-75 37-69 (81)
19 3f1i_H Hepatocyte growth facto 20.5 77 0.0026 22.4 2.9 28 46-73 3-30 (98)
20 1kdx_B CREB; complex (transcri 20.4 25 0.00086 19.4 0.3 24 23-55 3-26 (28)
No 1
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=61.16 E-value=3 Score=29.88 Aligned_cols=53 Identities=15% Similarity=0.349 Sum_probs=37.6
Q ss_pred hhhhcccceeeeeeehhhccCCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042191 20 AVVGKKRKGIISRIWNGIFRLKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRL 73 (170)
Q Consensus 20 ~~~~~~~~g~~s~iw~~~f~~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~ 73 (170)
+.-+|||..+||- ++-.|+...|+++..+-..-.-..++...++.+..||.++
T Consensus 38 eKl~KKrsS~~gs-~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qI 90 (101)
T 3teq_A 38 EKIKKKRNTLFGT-FHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQI 90 (101)
T ss_dssp HHHHHHHHHHHCH-HHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhee-eehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888886 6666888899999766655555666666677777666665
No 2
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=44.15 E-value=1.2e+02 Score=24.21 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 042191 113 MFLLPALSSLAYSAFV 128 (170)
Q Consensus 113 ~~~~P~li~l~r~~l~ 128 (170)
+++.|+++.++.-++.
T Consensus 152 ~vliPv~i~F~~Fa~h 167 (214)
T 4hkr_A 152 VVLIPVMIIFMAFAIH 167 (214)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4557888777766555
No 3
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=32.74 E-value=37 Score=27.11 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 042191 119 LSSLAYSAFVSFTRICDRKDQKTLERLRAERQAKIDELKERT 160 (170)
Q Consensus 119 li~l~r~~l~~~~~~~~~r~~~kLe~Lr~e~kkkIEeLKe~T 160 (170)
++++.+.+-..+-.|.+...++.++.|.+-|...++.||++=
T Consensus 67 ~~~~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~~i~~lk~~I 108 (214)
T 2cly_A 67 LVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAI 108 (214)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566688888888888888888887777776653
No 4
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.30 E-value=62 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHH-------HHHHHHHHHHhh
Q 042191 135 DRKDQKTLERLRA-------ERQAKIDELKER 159 (170)
Q Consensus 135 ~~r~~~kLe~Lr~-------e~kkkIEeLKe~ 159 (170)
..+...+|..||+ .|++.|++|-++
T Consensus 35 rqkekEqL~~LKkkl~~el~~h~~ei~~le~~ 66 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENEISHHAKEIERLQKE 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777773 345555554443
No 5
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=31.53 E-value=44 Score=24.97 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=23.5
Q ss_pred hhhcccceeeeeeehhhcc--CCCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042191 21 VVGKKRKGIISRIWNGIFR--LKRDDFEKRLQYISKEEAAVLARMKRRSQTWRRL 73 (170)
Q Consensus 21 ~~~~~~~g~~s~iw~~~f~--~~p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~ 73 (170)
.-+|||.-+|+- +.-.|+ ..-|+++..+-..-.-..++...++.+..+|.++
T Consensus 70 KlkKKrsSv~gs-~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qI 123 (136)
T 3ter_A 70 RLQKKQGSVLSS-LKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQI 123 (136)
T ss_dssp HHHHC------C-CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhee-eeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888875 555555 4445555444333333444445555565555544
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.99 E-value=46 Score=20.00 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=14.1
Q ss_pred CChHHHHHhhHHHHHHHHHHHH
Q 042191 42 RDDFEKRLQYISKEEAAVLARM 63 (170)
Q Consensus 42 p~~FEK~L~~Isk~i~~~~~~l 63 (170)
.+++||++..|+++..++.+.+
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766654443
No 7
>3arc_Y Protein YCF12; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3a0b_Y* 3a0h_Y*
Probab=30.40 E-value=36 Score=18.90 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHH
Q 042191 111 LPMFLLPALSSLAY 124 (170)
Q Consensus 111 lp~~~~P~li~l~r 124 (170)
+.++.+|++|.++.
T Consensus 10 lIv~aGP~VI~lLa 23 (29)
T 3arc_Y 10 MIGIAGPMIIFLLA 23 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhcCChheeehh
Confidence 34566999988764
No 8
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=30.28 E-value=21 Score=19.34 Aligned_cols=20 Identities=5% Similarity=0.288 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 042191 142 LERLRAERQAKIDELKERTN 161 (170)
Q Consensus 142 Le~Lr~e~kkkIEeLKe~Tn 161 (170)
.+++|.|-+.-+|++|++++
T Consensus 3 ~e~mr~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAAVG 22 (26)
T ss_dssp HHHTTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 46788899999999999876
No 9
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=30.25 E-value=63 Score=17.70 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=16.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 042191 45 FEKRLQYISKEEAAVLARMKR 65 (170)
Q Consensus 45 FEK~L~~Isk~i~~~~~~l~~ 65 (170)
.-|+|++|-.++..++.+|.+
T Consensus 4 IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 4 IKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 347888888888888887765
No 10
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=30.22 E-value=14 Score=27.00 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=18.6
Q ss_pred CCchhhHhhhh--hhhHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 042191 99 VDLDWKMRALR--VLPMFLLPALSSLAYSAFVSFT--RICDRKDQKTLERLRAERQAKIDELKE 158 (170)
Q Consensus 99 ~~~~w~~r~~~--~lp~~~~P~li~l~r~~l~~~~--~~~~~r~~~kLe~Lr~e~kkkIEeLKe 158 (170)
+.++|. -..+ .++++..|.++|++.-++...- +.+-.+--.+|+.+|++.+.=-.+|++
T Consensus 48 G~v~~~-Di~rsI~Fgli~aP~viYFls~vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln~~L~~ 110 (115)
T 2ksd_A 48 GQVESI-DVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDLSLNVQLKD 110 (115)
T ss_dssp CCSSSS-SCCSTTTHHHHHHHHHHHHHHHHHHCCCSSCCCCCC---------------------
T ss_pred ccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677774 1112 3466667988887765433111 001112223667777665544445544
No 11
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=27.34 E-value=65 Score=21.15 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHh
Q 042191 146 RAERQAKIDELKE 158 (170)
Q Consensus 146 r~e~kkkIEeLKe 158 (170)
+++.+++|++||+
T Consensus 35 rk~ekEQL~~LKk 47 (66)
T 2v7q_J 35 RARAKEQLAALKK 47 (66)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 12
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=25.50 E-value=69 Score=21.36 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=19.4
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHhh
Q 042191 135 DRKDQKTL-ERLRAERQAKIDELKER 159 (170)
Q Consensus 135 ~~r~~~kL-e~Lr~e~kkkIEeLKe~ 159 (170)
.++.+.+| +.|+++-++|+|..|.+
T Consensus 32 L~kiqdkLPeklkaeYk~KL~~tk~~ 57 (78)
T 2lhr_A 32 LEKLQEKLPEKYKAEYKKKLDQTRVE 57 (78)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45556666 78999999999998875
No 13
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=24.94 E-value=3.5e+02 Score=23.69 Aligned_cols=11 Identities=9% Similarity=0.208 Sum_probs=5.2
Q ss_pred hhccCCCChHH
Q 042191 36 GIFRLKRDDFE 46 (170)
Q Consensus 36 ~~f~~~p~~FE 46 (170)
.+.+.+++.|+
T Consensus 107 ~l~~~~~~~~~ 117 (582)
T 3b60_A 107 HMMGMPVAFFD 117 (582)
T ss_dssp HHHTCCSTHHH
T ss_pred HHHcCCHHHHC
Confidence 33444555554
No 14
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=24.72 E-value=87 Score=17.81 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042191 112 PMFLLPALSSLAYSAFVSF 130 (170)
Q Consensus 112 p~~~~P~li~l~r~~l~~~ 130 (170)
-.+++|+++.++-.++..|
T Consensus 6 ~~IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 6 SLVIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567888888777666533
No 15
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.36 E-value=56 Score=25.15 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 042191 135 DRKDQKTLERLRAERQAKIDELK 157 (170)
Q Consensus 135 ~~r~~~kLe~Lr~e~kkkIEeLK 157 (170)
..-++.++++|+++.+++..+|+
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~Lr 91 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSALR 91 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666555555544
No 16
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=23.14 E-value=3.8e+02 Score=23.46 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=2.6
Q ss_pred HHHHHH
Q 042191 115 LLPALS 120 (170)
Q Consensus 115 ~~P~li 120 (170)
++|+++
T Consensus 174 ~~~l~~ 179 (582)
T 3b5x_A 174 VAPVVA 179 (582)
T ss_pred HHHHHH
Confidence 344443
No 17
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.40 E-value=1e+02 Score=18.43 Aligned_cols=15 Identities=40% Similarity=0.395 Sum_probs=6.7
Q ss_pred HHHHhhHHHHHHHHH
Q 042191 46 EKRLQYISKEEAAVL 60 (170)
Q Consensus 46 EK~L~~Isk~i~~~~ 60 (170)
|.+|+.++++.+++.
T Consensus 26 eselqalekklaalk 40 (48)
T 1g6u_A 26 ESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.86 E-value=1.8e+02 Score=19.08 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=23.5
Q ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 43 DDFEKRLQYISKEEAAVLARMKRRSQTWRRLTR 75 (170)
Q Consensus 43 ~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~ 75 (170)
...|.++..+.++|+.++..+++...+......
T Consensus 37 ~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 37 KQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888777666554433
No 19
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.47 E-value=77 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=20.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042191 46 EKRLQYISKEEAAVLARMKRRSQTWRRL 73 (170)
Q Consensus 46 EK~L~~Isk~i~~~~~~l~~~~~~~rr~ 73 (170)
|+-|++|...+.-...|++++..+-|.+
T Consensus 3 ~ef~~~l~~sv~if~NRmksn~~RGrsi 30 (98)
T 3f1i_H 3 EQFLKALQNAVTTFVNRMKSNHMRGRSI 30 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4566777777777778888887766554
No 20
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=20.38 E-value=25 Score=19.38 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=17.8
Q ss_pred hcccceeeeeeehhhccCCCChHHHHHhhHHHH
Q 042191 23 GKKRKGIISRIWNGIFRLKRDDFEKRLQYISKE 55 (170)
Q Consensus 23 ~~~~~g~~s~iw~~~f~~~p~~FEK~L~~Isk~ 55 (170)
++++.++++| .| +|-|.|..|+.+
T Consensus 3 ~~krr~iL~r--------rp-SYrkIlndls~~ 26 (28)
T 1kdx_B 3 SQKRREILSR--------RP-SYRKILNDLSSD 26 (28)
T ss_dssp HHHHHHHHTT--------ST-HHHHHHHHHHHH
T ss_pred hhhhhhhhhc--------Cc-hHHHHHHhhccC
Confidence 4566677776 34 999999999864
Done!