Query 042191
Match_columns 170
No_of_seqs 122 out of 157
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 05:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hyda2 f.37.1.1 (A:1-323) Put 46.9 43 0.0031 23.6 8.4 17 141-157 195-211 (323)
2 d1vp7a_ a.7.13.1 (A:) Exonucle 34.7 13 0.00092 22.9 2.6 22 40-61 3-24 (68)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 31.2 15 0.0011 27.9 3.1 46 89-138 41-87 (248)
4 d1ivsa1 a.2.7.3 (A:797-862) Va 24.5 53 0.0038 19.2 4.2 25 44-68 1-25 (66)
5 d3b60a2 f.37.1.1 (A:10-328) Mu 23.2 1.1E+02 0.008 21.0 14.3 10 37-46 99-108 (319)
6 d1jb0i_ f.23.17.1 (I:) Subunit 21.2 58 0.0042 17.6 3.4 17 109-125 8-24 (38)
7 d1pzqa_ a.34.3.1 (A:) Erythron 20.1 26 0.0019 20.7 1.8 30 42-74 14-45 (60)
8 d1qr0a1 d.150.1.1 (A:1-101) 4' 19.6 23 0.0017 22.6 1.8 37 42-78 14-50 (101)
9 d1ydla1 d.295.1.1 (A:6-71) Gen 15.8 17 0.0012 22.3 0.2 18 149-166 48-65 (66)
10 d2azeb1 e.63.1.2 (B:201-301) T 13.4 1.3E+02 0.0098 19.2 4.5 29 45-73 6-34 (101)
No 1
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=46.85 E-value=43 Score=23.55 Aligned_cols=17 Identities=6% Similarity=0.251 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042191 141 TLERLRAERQAKIDELK 157 (170)
Q Consensus 141 kLe~Lr~e~kkkIEeLK 157 (170)
..+++.+.-.+.++-.+
T Consensus 195 ~~~~~~~~~~e~~~~~~ 211 (323)
T d2hyda2 195 ALAEVQGFLHERVQGIS 211 (323)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 33333333344443333
No 2
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=34.71 E-value=13 Score=22.88 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=17.4
Q ss_pred CCCChHHHHHhhHHHHHHHHHH
Q 042191 40 LKRDDFEKRLQYISKEEAAVLA 61 (170)
Q Consensus 40 ~~p~~FEK~L~~Isk~i~~~~~ 61 (170)
..|.+||..+..|+.=++.+++
T Consensus 3 ~~p~sfEe~l~~LE~IV~~LE~ 24 (68)
T d1vp7a_ 3 PLPQDFETALAELESLVSAMEN 24 (68)
T ss_dssp CBCCSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 5688999999988887777544
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=31.16 E-value=15 Score=27.89 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHHHHHhccCCCchhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042191 89 VGYAIMTTRSVDLDWKMRALR-VLPMFLLPALSSLAYSAFVSFTRICDRKD 138 (170)
Q Consensus 89 v~Y~~~~~~~~~~~w~~r~~~-~lp~~~~P~li~l~r~~l~~~~~~~~~r~ 138 (170)
+.|.|...|.-|..|-+..+. .+.++++|+ ++++...|++|..-++
T Consensus 41 ~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi----~yT~~iaFTNy~tgh~ 87 (248)
T d2r6gf1 41 GLYIFANRKAYAWRYVYPGMAGMGLFVLFPL----VCTIAIAFTNYSSTNQ 87 (248)
T ss_dssp HHHHHSSSCCTTHHHHHHHHHHHHHHTHHHH----HHHHHGGGBCCSSTTC
T ss_pred eEEEEEccCccceehhhhHHHHHHHHHHHhh----eeEEEEEEEEcCCCcc
Confidence 556676555444444434433 223333555 4555667778765443
No 4
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.53 E-value=53 Score=19.18 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=16.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHH
Q 042191 44 DFEKRLQYISKEEAAVLARMKRRSQ 68 (170)
Q Consensus 44 ~FEK~L~~Isk~i~~~~~~l~~~~~ 68 (170)
|+|++...|++++..++..+.+.+.
T Consensus 1 D~~~E~~RL~K~l~kl~~~i~~~~~ 25 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALAERSQR 25 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776666655543
No 5
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=23.23 E-value=1.1e+02 Score=21.04 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=4.6
Q ss_pred hccCCCChHH
Q 042191 37 IFRLKRDDFE 46 (170)
Q Consensus 37 ~f~~~p~~FE 46 (170)
+.+.+.+.|+
T Consensus 99 ll~~~~~~~~ 108 (319)
T d3b60a2 99 MMGMPVAFFD 108 (319)
T ss_dssp HHTCCSTHHH
T ss_pred hcccchhhcc
Confidence 3344445554
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=21.18 E-value=58 Score=17.56 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHHHH
Q 042191 109 RVLPMFLLPALSSLAYS 125 (170)
Q Consensus 109 ~~lp~~~~P~li~l~r~ 125 (170)
..||.++.|++.|+.-.
T Consensus 8 syLPwI~iPvv~wl~p~ 24 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLMPT 24 (38)
T ss_dssp TTHHHHHHHHHHTHHHH
T ss_pred HhcchhHHHHHHHHHHH
Confidence 35677888888776654
No 7
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=20.06 E-value=26 Score=20.74 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=17.5
Q ss_pred CChHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHH
Q 042191 42 RDDFEKRLQYISKE--EAAVLARMKRRSQTWRRLT 74 (170)
Q Consensus 42 p~~FEK~L~~Isk~--i~~~~~~l~~~~~~~rr~~ 74 (170)
-|+.||.|+.|+.+ ...+-++|.. ..|||+
T Consensus 14 ld~le~al~al~~~~gh~dvg~rle~---llrrw~ 45 (60)
T d1pzqa_ 14 LDELEKALEALSAEDGHDDVGQRLES---LLRRWN 45 (60)
T ss_dssp HHHHHHHHHHHTTSSCCHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHhcchhhcccHHHHHHHH---HHHHHh
Confidence 47899999998654 2333344433 345554
No 8
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=19.64 E-value=23 Score=22.56 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=25.5
Q ss_pred CChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042191 42 RDDFEKRLQYISKEEAAVLARMKRRSQTWRRLTRHLI 78 (170)
Q Consensus 42 p~~FEK~L~~Isk~i~~~~~~l~~~~~~~rr~~~~l~ 78 (170)
.+++|+-++-|+.++++-..+.+.-+.+.+.+.++++
T Consensus 14 ~~~~~~~~~~Ls~~e~~r~~r~~~~~dr~~~l~~r~l 50 (101)
T d1qr0a1 14 QEENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVL 50 (101)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 5678888888998888866666655555555555544
No 9
>d1ydla1 d.295.1.1 (A:6-71) General transcription factor IIH polypeptide 5, TFB5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.83 E-value=17 Score=22.33 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhcCcHhHH
Q 042191 149 RQAKIDELKERTNYYTTQ 166 (170)
Q Consensus 149 ~kkkIEeLKe~TnY~sT~ 166 (170)
-|++|++++++..|+.+.
T Consensus 48 lk~~l~~l~d~nsy~~~~ 65 (66)
T d1ydla1 48 LQERVGELMDQNAFSLTQ 65 (66)
T ss_dssp HHHHHHHTSCCCTTTTTT
T ss_pred HHHHHHHHHHhcCCCccc
Confidence 367899999999998765
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.42 E-value=1.3e+02 Score=19.16 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042191 45 FEKRLQYISKEEAAVLARMKRRSQTWRRL 73 (170)
Q Consensus 45 FEK~L~~Isk~i~~~~~~l~~~~~~~rr~ 73 (170)
-.++|+.|+.+++.+...+..-++..+.+
T Consensus 6 L~~El~~L~~~E~~LD~li~~~~~~L~~l 34 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDHLMNICTTQLRLL 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778777777666666665555443
Done!